Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417110 | sp|P24805|TSJT1_TOBAC | 41.611 | 149 | 85 | 2 | 1 | 148 | 1 | 148 | 1.50e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417110 | G7IP18 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011920 | Msa1417110 | -0.812226 | 4.715636e-51 | -8.615850e-47 |
| Msa0037180 | Msa1417110 | 0.824331 | 8.553313e-54 | -8.615850e-47 |
| Msa0044010 | Msa1417110 | 0.802433 | 5.624036e-49 | -8.615850e-47 |
| Msa0046950 | Msa1417110 | 0.908523 | 1.558233e-81 | -8.615850e-47 |
| Msa0053640 | Msa1417110 | 0.897688 | 1.102694e-76 | -8.615850e-47 |
| Msa0067590 | Msa1417110 | -0.806527 | 7.876836e-50 | -8.615850e-47 |
| Msa0076640 | Msa1417110 | 0.820958 | 5.207977e-53 | -8.615850e-47 |
| Msa0081610 | Msa1417110 | -0.800114 | 1.677438e-48 | -8.615850e-47 |
| Msa0092220 | Msa1417110 | 0.823990 | 1.028710e-53 | -8.615850e-47 |
| Msa0097570 | Msa1417110 | 0.803006 | 4.283467e-49 | -8.615850e-47 |
| Msa0099260 | Msa1417110 | 0.879232 | 1.473787e-69 | -8.615850e-47 |
| Msa1363280 | Msa1417110 | -0.860664 | 1.764512e-63 | -8.615850e-47 |
| Msa1363310 | Msa1417110 | -0.806447 | 8.191328e-50 | -8.615850e-47 |
| Msa1368400 | Msa1417110 | 0.804459 | 2.138252e-49 | -8.615850e-47 |
| Msa1385970 | Msa1417110 | 0.998594 | 6.934245e-270 | -8.615850e-47 |
| Msa1386580 | Msa1417110 | -0.806627 | 7.505044e-50 | -8.615850e-47 |
| Msa1417110 | Msa1441330 | 0.852154 | 5.562092e-61 | -8.615850e-47 |
| Msa1417110 | Msa1443220 | 0.847370 | 1.207077e-59 | -8.615850e-47 |
| Msa1417110 | Msa1453430 | 0.830613 | 2.660818e-55 | -8.615850e-47 |
| Msa0617470 | Msa1417110 | -0.803702 | 3.072627e-49 | -8.615850e-47 |
| Msa0626920 | Msa1417110 | 0.811812 | 5.806700e-51 | -8.615850e-47 |
| Msa0651870 | Msa1417110 | 0.815670 | 8.209355e-52 | -8.615850e-47 |
| Msa0651890 | Msa1417110 | 0.813212 | 2.868860e-51 | -8.615850e-47 |
| Msa0683200 | Msa1417110 | -0.832020 | 1.199523e-55 | -8.615850e-47 |
| Msa0689300 | Msa1417110 | 0.818763 | 1.654097e-52 | -8.615850e-47 |
| Msa0706110 | Msa1417110 | 0.808069 | 3.712196e-50 | -8.615850e-47 |
| Msa0758830 | Msa1417110 | 0.809105 | 2.229870e-50 | -8.615850e-47 |
| Msa0801320 | Msa1417110 | -0.806616 | 7.543932e-50 | -8.615850e-47 |
| Msa0832760 | Msa1417110 | 0.838961 | 2.106895e-57 | -8.615850e-47 |
| Msa0838640 | Msa1417110 | 0.820878 | 5.436098e-53 | -8.615850e-47 |
| Msa0838650 | Msa1417110 | 0.836034 | 1.185447e-56 | -8.615850e-47 |
| Msa0127910 | Msa1417110 | -0.806330 | 8.670554e-50 | -8.615850e-47 |
| Msa0145430 | Msa1417110 | 0.814596 | 1.421509e-51 | -8.615850e-47 |
| Msa0148040 | Msa1417110 | 0.891798 | 2.858555e-74 | -8.615850e-47 |
| Msa0173950 | Msa1417110 | -0.806100 | 9.689941e-50 | -8.615850e-47 |
| Msa0177320 | Msa1417110 | 0.813422 | 2.580997e-51 | -8.615850e-47 |
| Msa0186400 | Msa1417110 | -0.819838 | 9.411157e-53 | -8.615850e-47 |
| Msa0233920 | Msa1417110 | 0.994801 | 2.534703e-210 | -8.615850e-47 |
| Msa1249600 | Msa1417110 | 0.807702 | 4.441962e-50 | -8.615850e-47 |
| Msa1265020 | Msa1417110 | 0.818823 | 1.602700e-52 | -8.615850e-47 |
| Msa1312770 | Msa1417110 | 0.814037 | 1.888735e-51 | -8.615850e-47 |
| Msa1337850 | Msa1417110 | 0.835795 | 1.362450e-56 | -8.615850e-47 |
| Msa0386890 | Msa1417110 | 0.804378 | 2.223057e-49 | -8.615850e-47 |
| Msa0390590 | Msa1417110 | -0.807453 | 5.017797e-50 | -8.615850e-47 |
| Msa0403750 | Msa1417110 | 0.854930 | 8.862865e-62 | -8.615850e-47 |
| Msa0403790 | Msa1417110 | 0.828606 | 8.188810e-55 | -8.615850e-47 |
| Msa0403860 | Msa1417110 | 0.850159 | 2.033715e-60 | -8.615850e-47 |
| Msa0460760 | Msa1417110 | 0.824858 | 6.425540e-54 | -8.615850e-47 |
| Msa0464850 | Msa1417110 | 0.829846 | 4.096678e-55 | -8.615850e-47 |
| Msa0481310 | Msa1417110 | 0.810270 | 1.252942e-50 | -8.615850e-47 |
| Msa0982550 | Msa1417110 | 0.848092 | 7.639371e-60 | -8.615850e-47 |
| Msa1038350 | Msa1417110 | 0.803706 | 3.066559e-49 | -8.615850e-47 |
| Msa1087890 | Msa1417110 | 0.996484 | 4.074740e-228 | -8.615850e-47 |
| Msa0294200 | Msa1417110 | 0.823393 | 1.419360e-53 | -8.615850e-47 |
| Msa0307380 | Msa1417110 | 0.803953 | 2.725303e-49 | -8.615850e-47 |
| Msa0312640 | Msa1417110 | 0.951091 | 4.233270e-109 | -8.615850e-47 |
| Msa0333760 | Msa1417110 | 0.801554 | 8.525660e-49 | -8.615850e-47 |
| Msa1129420 | Msa1417110 | 0.914919 | 1.088520e-84 | -8.615850e-47 |
| Msa1173150 | Msa1417110 | 0.800352 | 1.500504e-48 | -8.615850e-47 |
| Msa1221960 | Msa1417110 | 0.819835 | 9.427468e-53 | -8.615850e-47 |
| Msa0484400 | Msa1417110 | 0.850855 | 1.296178e-60 | -8.615850e-47 |
| Msa0502900 | Msa1417110 | -0.805467 | 1.316427e-49 | -8.615850e-47 |
| Msa0510520 | Msa1417110 | 0.811685 | 6.187436e-51 | -8.615850e-47 |
| Msa0523420 | Msa1417110 | -0.829167 | 5.988532e-55 | -8.615850e-47 |
| Msa0526490 | Msa1417110 | -0.810387 | 1.181953e-50 | -8.615850e-47 |
| Msa0526500 | Msa1417110 | -0.859028 | 5.490820e-63 | -8.615850e-47 |
| Msa0526520 | Msa1417110 | -0.803612 | 3.208679e-49 | -8.615850e-47 |
| Msa0548160 | Msa1417110 | -0.829520 | 4.916976e-55 | -8.615850e-47 |
| Msa0563440 | Msa1417110 | 0.843282 | 1.542175e-58 | -8.615850e-47 |
| Msa0577640 | Msa1417110 | 0.800750 | 1.244610e-48 | -8.615850e-47 |
| Msa0577730 | Msa1417110 | 0.820532 | 6.525187e-53 | -8.615850e-47 |
| Msa0602320 | Msa1417110 | -0.804099 | 2.541395e-49 | -8.615850e-47 |
| Msa0969380 | Msa1417110 | 0.841559 | 4.415039e-58 | -8.615850e-47 |
| Msa0969590 | Msa1417110 | 0.837165 | 6.104306e-57 | -8.615850e-47 |
| Msa0969720 | Msa1417110 | 0.836263 | 1.036659e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417110 | MtrunA17_Chr2g0281901 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| Msa1417110 | MtrunA17_Chr4g0047531 | 74.704 | 253 | 62 | 2 | 1 | 251 | 64 | 316 | 3.06e-136 | 386 |
| Msa1417110 | MtrunA17_Chr2g0317901 | 66.800 | 250 | 82 | 1 | 1 | 249 | 1 | 250 | 3.55e-113 | 325 |
| Msa1417110 | MtrunA17_Chr1g0166351 | 46.000 | 250 | 131 | 3 | 1 | 248 | 1 | 248 | 1.99e-81 | 244 |
| Msa1417110 | MtrunA17_Chr1g0204611 | 42.972 | 249 | 138 | 2 | 1 | 247 | 1 | 247 | 6.08e-78 | 235 |
| Msa1417110 | MtrunA17_Chr2g0287871 | 40.870 | 230 | 132 | 3 | 1 | 229 | 1 | 227 | 2.52e-58 | 185 |
| Msa1417110 | MtrunA17_Chr4g0065571 | 38.261 | 230 | 139 | 2 | 1 | 229 | 1 | 228 | 1.05e-57 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417110 | AT4G27450.1 | 65.060 | 249 | 85 | 2 | 1 | 247 | 1 | 249 | 3.31e-117 | 335 |
| Msa1417110 | AT3G15450.1 | 61.847 | 249 | 92 | 3 | 1 | 247 | 1 | 248 | 3.99e-109 | 315 |
| Msa1417110 | AT5G43830.1 | 45.783 | 249 | 132 | 2 | 1 | 247 | 1 | 248 | 8.93e-81 | 243 |
| Msa1417110 | AT3G15450.2 | 59.896 | 192 | 74 | 3 | 1 | 190 | 1 | 191 | 3.09e-76 | 230 |
| Msa1417110 | AT3G22850.1 | 41.700 | 247 | 142 | 1 | 1 | 247 | 1 | 245 | 9.15e-73 | 223 |
| Msa1417110 | AT3G15450.3 | 59.649 | 171 | 66 | 3 | 1 | 169 | 1 | 170 | 5.06e-64 | 198 |
| Msa1417110 | AT5G19140.1 | 42.174 | 230 | 129 | 3 | 1 | 229 | 1 | 227 | 2.46e-60 | 190 |
| Msa1417110 | AT5G19140.2 | 39.056 | 233 | 126 | 4 | 1 | 232 | 1 | 218 | 6.19e-52 | 169 |
| Msa1417110 | AT5G19140.3 | 45.833 | 168 | 88 | 2 | 66 | 232 | 29 | 194 | 1.57e-50 | 164 |
Find 75 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGTTATTTCTGAAAATT+TGG | 0.186131 | tig0024442:-41652 | Msa1417110:CDS |
| GAGCAACTTATTAGTCCTTT+TGG | 0.192738 | tig0024442:-41137 | Msa1417110:three_prime_UTR |
| AGGCATTGCTTTCATCTTCT+TGG | 0.213186 | tig0024442:+41334 | None:intergenic |
| CAACATATACTGTGCTTTCA+TGG | 0.289891 | tig0024442:-42016 | Msa1417110:CDS |
| CTGAGAATCAACATTGAAAT+TGG | 0.290530 | tig0024442:+41280 | None:intergenic |
| TAGGGTTCTGATGGCCATAT+TGG | 0.309694 | tig0024442:-41705 | Msa1417110:CDS |
| GCGTCGGAAGTGAAGCTAAC+TGG | 0.331100 | tig0024442:-41235 | Msa1417110:CDS |
| GGGTTTGTTTGAAGGGGAAT+AGG | 0.347155 | tig0024442:+42526 | None:intergenic |
| TGGCCATATTGGACTCTATT+GGG | 0.347166 | tig0024442:-41694 | Msa1417110:CDS |
| CAAGAAATGGAGATTGAAAA+TGG | 0.365031 | tig0024442:+42867 | None:intergenic |
| AACTGCCTTCAAGTTCTTTG+AGG | 0.369411 | tig0024442:+41866 | None:intergenic |
| GTGAAGCTAACTGGGCTACT+TGG | 0.380329 | tig0024442:-41226 | Msa1417110:CDS |
| AAACTTCGTGTTATTCATAT+CGG | 0.383357 | tig0024442:+41038 | None:intergenic |
| ACACAGGTTGTTTAGTGGTT+TGG | 0.384227 | tig0024442:-42040 | Msa1417110:intron |
| GCTGGACTGTTAAGCTCCTT+TGG | 0.386416 | tig0024442:+42659 | None:intergenic |
| ATGGCCATATTGGACTCTAT+TGG | 0.399544 | tig0024442:-41695 | Msa1417110:CDS |
| GGTCATGTAAAATGCATTAG+AGG | 0.401764 | tig0024442:+42571 | None:intergenic |
| AAAATGAACATGCCAAGAAA+TGG | 0.410585 | tig0024442:+42854 | None:intergenic |
| TATAGCATACCTTTGATGAA+TGG | 0.418351 | tig0024442:+42502 | None:intergenic |
| AGAAGACACTGAAATTGATT+AGG | 0.428037 | tig0024442:+41007 | None:intergenic |
| TTGGATGCTCAAAGTTCAAC+AGG | 0.429617 | tig0024442:+41357 | None:intergenic |
| TGAAGCTAACTGGGCTACTT+GGG | 0.434720 | tig0024442:-41225 | Msa1417110:CDS |
| AGTCAATTAAACAAGCAGTA+TGG | 0.435366 | tig0024442:-41976 | Msa1417110:CDS |
| TTGTCACACAGGTTGTTTAG+TGG | 0.439422 | tig0024442:-42045 | Msa1417110:intron |
| GATCTAGAAGAGAACATGTT+GGG | 0.455955 | tig0024442:-42710 | Msa1417110:exon |
| TACCCCAATAGAGTCCAATA+TGG | 0.456193 | tig0024442:+41691 | None:intergenic |
| ATTGCTTTCATCTTCTTGGT+TGG | 0.456752 | tig0024442:+41338 | None:intergenic |
| AGGACTTGATCAGCAGGGTA+TGG | 0.462918 | tig0024442:+41886 | None:intergenic |
| ATATACATACCAGTTGGAAA+TGG | 0.462995 | tig0024442:+41594 | None:intergenic |
| TCATTTGCACCATTTCCAAC+TGG | 0.471531 | tig0024442:-41603 | Msa1417110:intron |
| ATTTGTGATCTATGATCATA+AGG | 0.473807 | tig0024442:-41839 | Msa1417110:CDS |
| TCTCTAAGAATTTCATGACT+TGG | 0.475577 | tig0024442:+42611 | None:intergenic |
| CAAGTCCTCAAAGAACTTGA+AGG | 0.477517 | tig0024442:-41871 | Msa1417110:CDS |
| TGTTTATCATCGAAGCATAT+CGG | 0.480407 | tig0024442:-41927 | Msa1417110:CDS |
| TGAATGGAGGGTTTGTTTGA+AGG | 0.484201 | tig0024442:+42518 | None:intergenic |
| CATATCGGACACTTCGTGAC+AGG | 0.489174 | tig0024442:-41912 | Msa1417110:CDS |
| CAAGCAGTATGGACTATCAA+AGG | 0.492197 | tig0024442:-41965 | Msa1417110:CDS |
| AAGGACTAATAAGTTGCTCT+TGG | 0.494089 | tig0024442:+41141 | None:intergenic |
| GTGTTTGATTAGGGTTCTGA+TGG | 0.494123 | tig0024442:-41714 | Msa1417110:intron |
| GAATGGAGGGTTTGTTTGAA+GGG | 0.511713 | tig0024442:+42519 | None:intergenic |
| CGTCGGAAGTGAAGCTAACT+GGG | 0.514379 | tig0024442:-41234 | Msa1417110:CDS |
| TGTTTGTTTCATAGTGAGCA+TGG | 0.516434 | tig0024442:-41380 | Msa1417110:CDS |
| AACATATACTGTGCTTTCAT+GGG | 0.516602 | tig0024442:-42015 | Msa1417110:CDS |
| AGCTTCTAATTCACACACTA+AGG | 0.518797 | tig0024442:-42639 | Msa1417110:CDS |
| TCTTTGAGGACTTGATCAGC+AGG | 0.520998 | tig0024442:+41880 | None:intergenic |
| TTAATTGACTAAGATTATGC+AGG | 0.523474 | tig0024442:+41989 | None:intergenic |
| AGCATACCTTTGATGAATGG+AGG | 0.526703 | tig0024442:+42505 | None:intergenic |
| GCATACCTTTGATGAATGGA+GGG | 0.530944 | tig0024442:+42506 | None:intergenic |
| GTGATCTATGATCATAAGGA+TGG | 0.533318 | tig0024442:-41835 | Msa1417110:CDS |
| TATTGCTGCTGATGGTTCTG+TGG | 0.539065 | tig0024442:-41670 | Msa1417110:CDS |
| ACACCCTCACTGTCTATCCT+AGG | 0.539998 | tig0024442:+41314 | None:intergenic |
| TATTGGGGTATTGCTGCTGA+TGG | 0.541579 | tig0024442:-41678 | Msa1417110:CDS |
| AATGGAGGGTTTGTTTGAAG+GGG | 0.545512 | tig0024442:+42520 | None:intergenic |
| TTAGTGTGTGAATTAGAAGC+TGG | 0.552483 | tig0024442:+42641 | None:intergenic |
| AGAAGATGAAAGCAATGCCT+AGG | 0.563928 | tig0024442:-41331 | Msa1417110:CDS |
| AAGCAGTATGGACTATCAAA+GGG | 0.565561 | tig0024442:-41964 | Msa1417110:CDS |
| TGATCTAGAAGAGAACATGT+TGG | 0.582611 | tig0024442:-42711 | Msa1417110:exon |
| GACAGTGAGGGTGTTATGTG+TGG | 0.584626 | tig0024442:-41305 | Msa1417110:CDS |
| ACAAACCCTCCATTCATCAA+AGG | 0.600022 | tig0024442:-42511 | Msa1417110:intron |
| TTAGCTTCACTTCCGACGCG+TGG | 0.602591 | tig0024442:+41239 | None:intergenic |
| AAAGTTGGTTAATGCACCAA+AGG | 0.604581 | tig0024442:-42675 | Msa1417110:CDS |
| TCAATGTTGATTCTCAGTCG+AGG | 0.609359 | tig0024442:-41274 | Msa1417110:CDS |
| AATCAAATGATGCCACGCGT+CGG | 0.614420 | tig0024442:-41251 | Msa1417110:CDS |
| ATATCGGACACTTCGTGACA+GGG | 0.614896 | tig0024442:-41911 | Msa1417110:CDS |
| CTTTGAGGACTTGATCAGCA+GGG | 0.622312 | tig0024442:+41881 | None:intergenic |
| TAATAAAGCATCATTTCCAA+AGG | 0.630341 | tig0024442:+42550 | None:intergenic |
| GAAGCTAACTGGGCTACTTG+GGG | 0.631415 | tig0024442:-41224 | Msa1417110:CDS |
| GGCCATATTGGACTCTATTG+GGG | 0.633432 | tig0024442:-41693 | Msa1417110:CDS |
| ACAGTGAGGGTGTTATGTGT+GGG | 0.635934 | tig0024442:-41304 | Msa1417110:CDS |
| ATGCCTAGGATAGACAGTGA+GGG | 0.675197 | tig0024442:-41317 | Msa1417110:CDS |
| CAGTATGGACTATCAAAGGG+AGG | 0.687799 | tig0024442:-41961 | Msa1417110:CDS |
| CAGTGAGGGTGTTATGTGTG+GGG | 0.693979 | tig0024442:-41303 | Msa1417110:CDS |
| TATCGGACACTTCGTGACAG+GGG | 0.696194 | tig0024442:-41910 | Msa1417110:CDS |
| AATGCCTAGGATAGACAGTG+AGG | 0.696652 | tig0024442:-41318 | Msa1417110:CDS |
| ACTATCAAAGGGAGGCAACG+AGG | 0.706158 | tig0024442:-41953 | Msa1417110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAAAAAAACTAAA+TGG | + | tig0024442:41450-41469 | None:intergenic | 10.0% |
| !! | AGAAAAAAAAAAAAACTAAA+TGG | + | tig0024442:41450-41469 | None:intergenic | 10.0% |
| !!! | ATCATTAGTTTATAATTAGA+AGG | + | tig0024442:41424-41443 | None:intergenic | 15.0% |
| !!! | TATATAATTTTAGCTTCTAT+AGG | - | tig0024442:41576-41595 | Msa1417110:intron | 15.0% |
| !! | TCAATTAATTAGTCAAAAAA+AGG | + | tig0024442:42151-42170 | None:intergenic | 15.0% |
| !!! | ATCATTAGTTTATAATTAGA+AGG | + | tig0024442:41424-41443 | None:intergenic | 15.0% |
| !!! | TATATAATTTTAGCTTCTAT+AGG | - | tig0024442:41576-41595 | Msa1417110:intron | 15.0% |
| !! | TCAATTAATTAGTCAAAAAA+AGG | + | tig0024442:42151-42170 | None:intergenic | 15.0% |
| !! | AATTATGTTTGTGTTTGATT+AGG | - | tig0024442:42172-42191 | Msa1417110:intron | 20.0% |
| !! | ATTATGTTTGTGTTTGATTA+GGG | - | tig0024442:42173-42192 | Msa1417110:intron | 20.0% |
| !! | AATAACCATTTAGATCAAAT+TGG | - | tig0024442:42419-42438 | Msa1417110:intron | 20.0% |
| !! | TTAAATGTTGTTGAAATTTC+AGG | - | tig0024442:42492-42511 | Msa1417110:intron | 20.0% |
| !! | TAAATGTTGTTGAAATTTCA+GGG | - | tig0024442:42493-42512 | Msa1417110:intron | 20.0% |
| !! | AATTATGTTTGTGTTTGATT+AGG | - | tig0024442:42172-42191 | Msa1417110:intron | 20.0% |
| !! | ATTATGTTTGTGTTTGATTA+GGG | - | tig0024442:42173-42192 | Msa1417110:intron | 20.0% |
| !! | AATAACCATTTAGATCAAAT+TGG | - | tig0024442:42419-42438 | Msa1417110:intron | 20.0% |
| !! | TTAAATGTTGTTGAAATTTC+AGG | - | tig0024442:42492-42511 | Msa1417110:intron | 20.0% |
| !! | TAAATGTTGTTGAAATTTCA+GGG | - | tig0024442:42493-42512 | Msa1417110:intron | 20.0% |
| !! | TAATAAAGCATCATTTCCAA+AGG | + | tig0024442:41349-41368 | None:intergenic | 25.0% |
| ! | CTAATCTTAGACATAAACTT+AGG | + | tig0024442:41631-41650 | None:intergenic | 25.0% |
| ! | ATAATATTAGGTCAAACTAC+TGG | - | tig0024442:41696-41715 | Msa1417110:CDS | 25.0% |
| ! | CTAGATCTAGGTAAATAAAA+AGG | - | tig0024442:41770-41789 | Msa1417110:intron | 25.0% |
| ! | TTAATTGACTAAGATTATGC+AGG | + | tig0024442:41910-41929 | None:intergenic | 25.0% |
| ! | ATTTGTGATCTATGATCATA+AGG | - | tig0024442:42057-42076 | Msa1417110:intron | 25.0% |
| !!! | TAATTTTTTCCAACGTTTAG+AGG | + | tig0024442:42127-42146 | None:intergenic | 25.0% |
| !!! | TGTGGTTATTTCTGAAAATT+TGG | - | tig0024442:42244-42263 | Msa1417110:intron | 25.0% |
| ! | TCATTTATGATCTTTCCATA+GGG | + | tig0024442:42358-42377 | None:intergenic | 25.0% |
| ! | ATCATTTATGATCTTTCCAT+AGG | + | tig0024442:42359-42378 | None:intergenic | 25.0% |
| ! | CAAAAACTAAATATCCCAAA+AGG | + | tig0024442:42777-42796 | None:intergenic | 25.0% |
| !!! | GATATTTAGTTTTTGTCGTT+TGG | - | tig0024442:42782-42801 | Msa1417110:intron | 25.0% |
| !! | AAACTTCGTGTTATTCATAT+CGG | + | tig0024442:42861-42880 | None:intergenic | 25.0% |
| !! | TAATAAAGCATCATTTCCAA+AGG | + | tig0024442:41349-41368 | None:intergenic | 25.0% |
| ! | CTAATCTTAGACATAAACTT+AGG | + | tig0024442:41631-41650 | None:intergenic | 25.0% |
| ! | ATAATATTAGGTCAAACTAC+TGG | - | tig0024442:41696-41715 | Msa1417110:CDS | 25.0% |
| ! | CTAGATCTAGGTAAATAAAA+AGG | - | tig0024442:41770-41789 | Msa1417110:intron | 25.0% |
| ! | TTAATTGACTAAGATTATGC+AGG | + | tig0024442:41910-41929 | None:intergenic | 25.0% |
| ! | ATTTGTGATCTATGATCATA+AGG | - | tig0024442:42057-42076 | Msa1417110:intron | 25.0% |
| !!! | TAATTTTTTCCAACGTTTAG+AGG | + | tig0024442:42127-42146 | None:intergenic | 25.0% |
| !!! | TGTGGTTATTTCTGAAAATT+TGG | - | tig0024442:42244-42263 | Msa1417110:intron | 25.0% |
| ! | TCATTTATGATCTTTCCATA+GGG | + | tig0024442:42358-42377 | None:intergenic | 25.0% |
| ! | ATCATTTATGATCTTTCCAT+AGG | + | tig0024442:42359-42378 | None:intergenic | 25.0% |
| ! | CAAAAACTAAATATCCCAAA+AGG | + | tig0024442:42777-42796 | None:intergenic | 25.0% |
| !!! | GATATTTAGTTTTTGTCGTT+TGG | - | tig0024442:42782-42801 | Msa1417110:intron | 25.0% |
| !! | AAACTTCGTGTTATTCATAT+CGG | + | tig0024442:42861-42880 | None:intergenic | 25.0% |
| CAAGAAATGGAGATTGAAAA+TGG | + | tig0024442:41032-41051 | None:intergenic | 30.0% | |
| ! | CATTTTCAATCTCCATTTCT+TGG | - | tig0024442:41030-41049 | Msa1417110:three_prime_UTR | 30.0% |
| AAAATGAACATGCCAAGAAA+TGG | + | tig0024442:41045-41064 | None:intergenic | 30.0% | |
| ! | TCTCTAAGAATTTCATGACT+TGG | + | tig0024442:41288-41307 | None:intergenic | 30.0% |
| ! | AATGCATTTTACATGACCTT+TGG | - | tig0024442:41330-41349 | Msa1417110:CDS | 30.0% |
| TATAGCATACCTTTGATGAA+TGG | + | tig0024442:41397-41416 | None:intergenic | 30.0% | |
| ! | GCATATAATCTTTTCTCCTA+CGG | + | tig0024442:41663-41682 | None:intergenic | 30.0% |
| ! | TATTTACCTAGATCTAGTTC+AGG | + | tig0024442:41767-41786 | None:intergenic | 30.0% |
| AACATATACTGTGCTTTCAT+GGG | - | tig0024442:41881-41900 | Msa1417110:CDS | 30.0% | |
| AGTCAATTAAACAAGCAGTA+TGG | - | tig0024442:41920-41939 | Msa1417110:CDS | 30.0% | |
| TGTTTATCATCGAAGCATAT+CGG | - | tig0024442:41969-41988 | Msa1417110:CDS | 30.0% | |
| ATATACATACCAGTTGGAAA+TGG | + | tig0024442:42305-42324 | None:intergenic | 30.0% | |
| TTCCAACTGGTATGTATATT+TGG | - | tig0024442:42306-42325 | Msa1417110:intron | 30.0% | |
| AACCAAATATACATACCAGT+TGG | + | tig0024442:42311-42330 | None:intergenic | 30.0% | |
| !! | ATGAGTTTTTAACTACCCTA+TGG | - | tig0024442:42340-42359 | Msa1417110:intron | 30.0% |
| GTATGCCAATTTGATCTAAA+TGG | + | tig0024442:42427-42446 | None:intergenic | 30.0% | |
| ATAATGTGCGAAATTGTCTA+TGG | - | tig0024442:42451-42470 | Msa1417110:intron | 30.0% | |
| TAATGTGCGAAATTGTCTAT+GGG | - | tig0024442:42452-42471 | Msa1417110:intron | 30.0% | |
| CTGAGAATCAACATTGAAAT+TGG | + | tig0024442:42619-42638 | None:intergenic | 30.0% | |
| ! | AGCAACTTATTAGTCCTTTT+GGG | - | tig0024442:42760-42779 | Msa1417110:intron | 30.0% |
| CAAGAAATGGAGATTGAAAA+TGG | + | tig0024442:41032-41051 | None:intergenic | 30.0% | |
| ! | CATTTTCAATCTCCATTTCT+TGG | - | tig0024442:41030-41049 | Msa1417110:three_prime_UTR | 30.0% |
| AAAATGAACATGCCAAGAAA+TGG | + | tig0024442:41045-41064 | None:intergenic | 30.0% | |
| ! | TCTCTAAGAATTTCATGACT+TGG | + | tig0024442:41288-41307 | None:intergenic | 30.0% |
| ! | AATGCATTTTACATGACCTT+TGG | - | tig0024442:41330-41349 | Msa1417110:CDS | 30.0% |
| TATAGCATACCTTTGATGAA+TGG | + | tig0024442:41397-41416 | None:intergenic | 30.0% | |
| ! | GCATATAATCTTTTCTCCTA+CGG | + | tig0024442:41663-41682 | None:intergenic | 30.0% |
| ! | TATTTACCTAGATCTAGTTC+AGG | + | tig0024442:41767-41786 | None:intergenic | 30.0% |
| AACATATACTGTGCTTTCAT+GGG | - | tig0024442:41881-41900 | Msa1417110:CDS | 30.0% | |
| AGTCAATTAAACAAGCAGTA+TGG | - | tig0024442:41920-41939 | Msa1417110:CDS | 30.0% | |
| TGTTTATCATCGAAGCATAT+CGG | - | tig0024442:41969-41988 | Msa1417110:CDS | 30.0% | |
| ATATACATACCAGTTGGAAA+TGG | + | tig0024442:42305-42324 | None:intergenic | 30.0% | |
| TTCCAACTGGTATGTATATT+TGG | - | tig0024442:42306-42325 | Msa1417110:intron | 30.0% | |
| AACCAAATATACATACCAGT+TGG | + | tig0024442:42311-42330 | None:intergenic | 30.0% | |
| !! | ATGAGTTTTTAACTACCCTA+TGG | - | tig0024442:42340-42359 | Msa1417110:intron | 30.0% |
| GTATGCCAATTTGATCTAAA+TGG | + | tig0024442:42427-42446 | None:intergenic | 30.0% | |
| ATAATGTGCGAAATTGTCTA+TGG | - | tig0024442:42451-42470 | Msa1417110:intron | 30.0% | |
| TAATGTGCGAAATTGTCTAT+GGG | - | tig0024442:42452-42471 | Msa1417110:intron | 30.0% | |
| CTGAGAATCAACATTGAAAT+TGG | + | tig0024442:42619-42638 | None:intergenic | 30.0% | |
| ! | AGCAACTTATTAGTCCTTTT+GGG | - | tig0024442:42760-42779 | Msa1417110:intron | 30.0% |
| TGATCTAGAAGAGAACATGT+TGG | - | tig0024442:41185-41204 | Msa1417110:three_prime_UTR | 35.0% | |
| GATCTAGAAGAGAACATGTT+GGG | - | tig0024442:41186-41205 | Msa1417110:three_prime_UTR | 35.0% | |
| ! | GAACATGTTGGGAATTTTCA+AGG | - | tig0024442:41197-41216 | Msa1417110:three_prime_UTR | 35.0% |
| !! | GGGAATTTTCAAGGAAAAGT+TGG | - | tig0024442:41206-41225 | Msa1417110:exon | 35.0% |
| ! | AAAGTTGGTTAATGCACCAA+AGG | - | tig0024442:41221-41240 | Msa1417110:CDS | 35.0% |
| TTAGTGTGTGAATTAGAAGC+TGG | + | tig0024442:41258-41277 | None:intergenic | 35.0% | |
| AGCTTCTAATTCACACACTA+AGG | - | tig0024442:41257-41276 | Msa1417110:CDS | 35.0% | |
| GGTCATGTAAAATGCATTAG+AGG | + | tig0024442:41328-41347 | None:intergenic | 35.0% | |
| TAGGTTTCAGATCTGATTGT+AGG | - | tig0024442:41595-41614 | Msa1417110:intron | 35.0% | |
| AAATGACCTGAACTAGATCT+AGG | - | tig0024442:41758-41777 | Msa1417110:intron | 35.0% | |
| !! | AAATGTGTCATTTGTCACAC+AGG | - | tig0024442:41840-41859 | Msa1417110:CDS | 35.0% |
| CAACATATACTGTGCTTTCA+TGG | - | tig0024442:41880-41899 | Msa1417110:CDS | 35.0% | |
| ! | AAGCAGTATGGACTATCAAA+GGG | - | tig0024442:41932-41951 | Msa1417110:CDS | 35.0% |
| GTGATCTATGATCATAAGGA+TGG | - | tig0024442:42061-42080 | Msa1417110:intron | 35.0% | |
| ! | CTTAATTAGCCTCTAAACGT+TGG | - | tig0024442:42115-42134 | Msa1417110:intron | 35.0% |
| TGTTTGTTTCATAGTGAGCA+TGG | - | tig0024442:42516-42535 | Msa1417110:CDS | 35.0% | |
| ATTGCTTTCATCTTCTTGGT+TGG | + | tig0024442:42561-42580 | None:intergenic | 35.0% | |
| AAGGACTAATAAGTTGCTCT+TGG | + | tig0024442:42758-42777 | None:intergenic | 35.0% | |
| ! | GAGCAACTTATTAGTCCTTT+TGG | - | tig0024442:42759-42778 | Msa1417110:intron | 35.0% |
| TGATCTAGAAGAGAACATGT+TGG | - | tig0024442:41185-41204 | Msa1417110:three_prime_UTR | 35.0% | |
| GATCTAGAAGAGAACATGTT+GGG | - | tig0024442:41186-41205 | Msa1417110:three_prime_UTR | 35.0% | |
| ! | GAACATGTTGGGAATTTTCA+AGG | - | tig0024442:41197-41216 | Msa1417110:three_prime_UTR | 35.0% |
| !! | GGGAATTTTCAAGGAAAAGT+TGG | - | tig0024442:41206-41225 | Msa1417110:exon | 35.0% |
| ! | AAAGTTGGTTAATGCACCAA+AGG | - | tig0024442:41221-41240 | Msa1417110:CDS | 35.0% |
| TTAGTGTGTGAATTAGAAGC+TGG | + | tig0024442:41258-41277 | None:intergenic | 35.0% | |
| AGCTTCTAATTCACACACTA+AGG | - | tig0024442:41257-41276 | Msa1417110:CDS | 35.0% | |
| GGTCATGTAAAATGCATTAG+AGG | + | tig0024442:41328-41347 | None:intergenic | 35.0% | |
| TAGGTTTCAGATCTGATTGT+AGG | - | tig0024442:41595-41614 | Msa1417110:intron | 35.0% | |
| AAATGACCTGAACTAGATCT+AGG | - | tig0024442:41758-41777 | Msa1417110:intron | 35.0% | |
| !! | AAATGTGTCATTTGTCACAC+AGG | - | tig0024442:41840-41859 | Msa1417110:CDS | 35.0% |
| CAACATATACTGTGCTTTCA+TGG | - | tig0024442:41880-41899 | Msa1417110:CDS | 35.0% | |
| ! | AAGCAGTATGGACTATCAAA+GGG | - | tig0024442:41932-41951 | Msa1417110:CDS | 35.0% |
| GTGATCTATGATCATAAGGA+TGG | - | tig0024442:42061-42080 | Msa1417110:intron | 35.0% | |
| ! | CTTAATTAGCCTCTAAACGT+TGG | - | tig0024442:42115-42134 | Msa1417110:intron | 35.0% |
| TGTTTGTTTCATAGTGAGCA+TGG | - | tig0024442:42516-42535 | Msa1417110:CDS | 35.0% | |
| ATTGCTTTCATCTTCTTGGT+TGG | + | tig0024442:42561-42580 | None:intergenic | 35.0% | |
| AAGGACTAATAAGTTGCTCT+TGG | + | tig0024442:42758-42777 | None:intergenic | 35.0% | |
| ! | GAGCAACTTATTAGTCCTTT+TGG | - | tig0024442:42759-42778 | Msa1417110:intron | 35.0% |
| ! | AATGGAGGGTTTGTTTGAAG+GGG | + | tig0024442:41379-41398 | None:intergenic | 40.0% |
| ! | GAATGGAGGGTTTGTTTGAA+GGG | + | tig0024442:41380-41399 | None:intergenic | 40.0% |
| ! | TGAATGGAGGGTTTGTTTGA+AGG | + | tig0024442:41381-41400 | None:intergenic | 40.0% |
| ACAAACCCTCCATTCATCAA+AGG | - | tig0024442:41385-41404 | Msa1417110:CDS | 40.0% | |
| GCATACCTTTGATGAATGGA+GGG | + | tig0024442:41393-41412 | None:intergenic | 40.0% | |
| AGCATACCTTTGATGAATGG+AGG | + | tig0024442:41394-41413 | None:intergenic | 40.0% | |
| TTGTCACACAGGTTGTTTAG+TGG | - | tig0024442:41851-41870 | Msa1417110:CDS | 40.0% | |
| ACACAGGTTGTTTAGTGGTT+TGG | - | tig0024442:41856-41875 | Msa1417110:CDS | 40.0% | |
| ! | CAAGCAGTATGGACTATCAA+AGG | - | tig0024442:41931-41950 | Msa1417110:CDS | 40.0% |
| CAAGTCCTCAAAGAACTTGA+AGG | - | tig0024442:42025-42044 | Msa1417110:CDS | 40.0% | |
| ! | AACTGCCTTCAAGTTCTTTG+AGG | + | tig0024442:42033-42052 | None:intergenic | 40.0% |
| ! | GTGTTTGATTAGGGTTCTGA+TGG | - | tig0024442:42182-42201 | Msa1417110:intron | 40.0% |
| ATGGCCATATTGGACTCTAT+TGG | - | tig0024442:42201-42220 | Msa1417110:intron | 40.0% | |
| TGGCCATATTGGACTCTATT+GGG | - | tig0024442:42202-42221 | Msa1417110:intron | 40.0% | |
| TACCCCAATAGAGTCCAATA+TGG | + | tig0024442:42208-42227 | None:intergenic | 40.0% | |
| TCATTTGCACCATTTCCAAC+TGG | - | tig0024442:42293-42312 | Msa1417110:intron | 40.0% | |
| TTGGATGCTCAAAGTTCAAC+AGG | + | tig0024442:42542-42561 | None:intergenic | 40.0% | |
| ! | AGGCATTGCTTTCATCTTCT+TGG | + | tig0024442:42565-42584 | None:intergenic | 40.0% |
| AGAAGATGAAAGCAATGCCT+AGG | - | tig0024442:42565-42584 | Msa1417110:CDS | 40.0% | |
| !! | TCAATGTTGATTCTCAGTCG+AGG | - | tig0024442:42622-42641 | Msa1417110:CDS | 40.0% |
| ! | AATGGAGGGTTTGTTTGAAG+GGG | + | tig0024442:41379-41398 | None:intergenic | 40.0% |
| ! | GAATGGAGGGTTTGTTTGAA+GGG | + | tig0024442:41380-41399 | None:intergenic | 40.0% |
| ! | TGAATGGAGGGTTTGTTTGA+AGG | + | tig0024442:41381-41400 | None:intergenic | 40.0% |
| ACAAACCCTCCATTCATCAA+AGG | - | tig0024442:41385-41404 | Msa1417110:CDS | 40.0% | |
| GCATACCTTTGATGAATGGA+GGG | + | tig0024442:41393-41412 | None:intergenic | 40.0% | |
| AGCATACCTTTGATGAATGG+AGG | + | tig0024442:41394-41413 | None:intergenic | 40.0% | |
| TTGTCACACAGGTTGTTTAG+TGG | - | tig0024442:41851-41870 | Msa1417110:CDS | 40.0% | |
| ACACAGGTTGTTTAGTGGTT+TGG | - | tig0024442:41856-41875 | Msa1417110:CDS | 40.0% | |
| ! | CAAGCAGTATGGACTATCAA+AGG | - | tig0024442:41931-41950 | Msa1417110:CDS | 40.0% |
| CAAGTCCTCAAAGAACTTGA+AGG | - | tig0024442:42025-42044 | Msa1417110:CDS | 40.0% | |
| ! | AACTGCCTTCAAGTTCTTTG+AGG | + | tig0024442:42033-42052 | None:intergenic | 40.0% |
| ! | GTGTTTGATTAGGGTTCTGA+TGG | - | tig0024442:42182-42201 | Msa1417110:intron | 40.0% |
| ATGGCCATATTGGACTCTAT+TGG | - | tig0024442:42201-42220 | Msa1417110:intron | 40.0% | |
| TGGCCATATTGGACTCTATT+GGG | - | tig0024442:42202-42221 | Msa1417110:intron | 40.0% | |
| TACCCCAATAGAGTCCAATA+TGG | + | tig0024442:42208-42227 | None:intergenic | 40.0% | |
| TCATTTGCACCATTTCCAAC+TGG | - | tig0024442:42293-42312 | Msa1417110:intron | 40.0% | |
| TTGGATGCTCAAAGTTCAAC+AGG | + | tig0024442:42542-42561 | None:intergenic | 40.0% | |
| ! | AGGCATTGCTTTCATCTTCT+TGG | + | tig0024442:42565-42584 | None:intergenic | 40.0% |
| AGAAGATGAAAGCAATGCCT+AGG | - | tig0024442:42565-42584 | Msa1417110:CDS | 40.0% | |
| !! | TCAATGTTGATTCTCAGTCG+AGG | - | tig0024442:42622-42641 | Msa1417110:CDS | 40.0% |
| ! | GGGTTTGTTTGAAGGGGAAT+AGG | + | tig0024442:41373-41392 | None:intergenic | 45.0% |
| AGATTAGACCTGCAAACCGT+AGG | - | tig0024442:41644-41663 | Msa1417110:CDS | 45.0% | |
| ! | TCTTTTCTCCTACGGTTTGC+AGG | + | tig0024442:41655-41674 | None:intergenic | 45.0% |
| ! | CAGTATGGACTATCAAAGGG+AGG | - | tig0024442:41935-41954 | Msa1417110:CDS | 45.0% |
| ATATCGGACACTTCGTGACA+GGG | - | tig0024442:41985-42004 | Msa1417110:CDS | 45.0% | |
| ! | CTTTGAGGACTTGATCAGCA+GGG | + | tig0024442:42018-42037 | None:intergenic | 45.0% |
| ! | TCTTTGAGGACTTGATCAGC+AGG | + | tig0024442:42019-42038 | None:intergenic | 45.0% |
| ! | TAGGGTTCTGATGGCCATAT+TGG | - | tig0024442:42191-42210 | Msa1417110:intron | 45.0% |
| GGCCATATTGGACTCTATTG+GGG | - | tig0024442:42203-42222 | Msa1417110:intron | 45.0% | |
| !! | TATTGGGGTATTGCTGCTGA+TGG | - | tig0024442:42218-42237 | Msa1417110:intron | 45.0% |
| ! | TATTGCTGCTGATGGTTCTG+TGG | - | tig0024442:42226-42245 | Msa1417110:intron | 45.0% |
| AATGCCTAGGATAGACAGTG+AGG | - | tig0024442:42578-42597 | Msa1417110:CDS | 45.0% | |
| ATGCCTAGGATAGACAGTGA+GGG | - | tig0024442:42579-42598 | Msa1417110:CDS | 45.0% | |
| !! | ACAGTGAGGGTGTTATGTGT+GGG | - | tig0024442:42592-42611 | Msa1417110:CDS | 45.0% |
| AATCAAATGATGCCACGCGT+CGG | - | tig0024442:42645-42664 | Msa1417110:CDS | 45.0% | |
| TGAAGCTAACTGGGCTACTT+GGG | - | tig0024442:42671-42690 | Msa1417110:CDS | 45.0% | |
| ! | GGGTTTGTTTGAAGGGGAAT+AGG | + | tig0024442:41373-41392 | None:intergenic | 45.0% |
| AGATTAGACCTGCAAACCGT+AGG | - | tig0024442:41644-41663 | Msa1417110:CDS | 45.0% | |
| ! | TCTTTTCTCCTACGGTTTGC+AGG | + | tig0024442:41655-41674 | None:intergenic | 45.0% |
| ! | CAGTATGGACTATCAAAGGG+AGG | - | tig0024442:41935-41954 | Msa1417110:CDS | 45.0% |
| ATATCGGACACTTCGTGACA+GGG | - | tig0024442:41985-42004 | Msa1417110:CDS | 45.0% | |
| ! | CTTTGAGGACTTGATCAGCA+GGG | + | tig0024442:42018-42037 | None:intergenic | 45.0% |
| ! | TCTTTGAGGACTTGATCAGC+AGG | + | tig0024442:42019-42038 | None:intergenic | 45.0% |
| ! | TAGGGTTCTGATGGCCATAT+TGG | - | tig0024442:42191-42210 | Msa1417110:intron | 45.0% |
| GGCCATATTGGACTCTATTG+GGG | - | tig0024442:42203-42222 | Msa1417110:intron | 45.0% | |
| !! | TATTGGGGTATTGCTGCTGA+TGG | - | tig0024442:42218-42237 | Msa1417110:intron | 45.0% |
| ! | TATTGCTGCTGATGGTTCTG+TGG | - | tig0024442:42226-42245 | Msa1417110:intron | 45.0% |
| AATGCCTAGGATAGACAGTG+AGG | - | tig0024442:42578-42597 | Msa1417110:CDS | 45.0% | |
| ATGCCTAGGATAGACAGTGA+GGG | - | tig0024442:42579-42598 | Msa1417110:CDS | 45.0% | |
| !! | ACAGTGAGGGTGTTATGTGT+GGG | - | tig0024442:42592-42611 | Msa1417110:CDS | 45.0% |
| AATCAAATGATGCCACGCGT+CGG | - | tig0024442:42645-42664 | Msa1417110:CDS | 45.0% | |
| TGAAGCTAACTGGGCTACTT+GGG | - | tig0024442:42671-42690 | Msa1417110:CDS | 45.0% | |
| !! | ATTATATTTCAAATAATATT+AGG | - | tig0024442:41684-41703 | Msa1417110:CDS | 5.0% |
| !! | ATTATATTTCAAATAATATT+AGG | - | tig0024442:41684-41703 | Msa1417110:CDS | 5.0% |
| GCTGGACTGTTAAGCTCCTT+TGG | + | tig0024442:41240-41259 | None:intergenic | 50.0% | |
| ACTATCAAAGGGAGGCAACG+AGG | - | tig0024442:41943-41962 | Msa1417110:CDS | 50.0% | |
| CATATCGGACACTTCGTGAC+AGG | - | tig0024442:41984-42003 | Msa1417110:CDS | 50.0% | |
| TATCGGACACTTCGTGACAG+GGG | - | tig0024442:41986-42005 | Msa1417110:CDS | 50.0% | |
| AGGACTTGATCAGCAGGGTA+TGG | + | tig0024442:42013-42032 | None:intergenic | 50.0% | |
| ACACCCTCACTGTCTATCCT+AGG | + | tig0024442:42585-42604 | None:intergenic | 50.0% | |
| !! | GACAGTGAGGGTGTTATGTG+TGG | - | tig0024442:42591-42610 | Msa1417110:CDS | 50.0% |
| !! | CAGTGAGGGTGTTATGTGTG+GGG | - | tig0024442:42593-42612 | Msa1417110:CDS | 50.0% |
| CGTCGGAAGTGAAGCTAACT+GGG | - | tig0024442:42662-42681 | Msa1417110:CDS | 50.0% | |
| GTGAAGCTAACTGGGCTACT+TGG | - | tig0024442:42670-42689 | Msa1417110:CDS | 50.0% | |
| GAAGCTAACTGGGCTACTTG+GGG | - | tig0024442:42672-42691 | Msa1417110:CDS | 50.0% | |
| GCTGGACTGTTAAGCTCCTT+TGG | + | tig0024442:41240-41259 | None:intergenic | 50.0% | |
| ACTATCAAAGGGAGGCAACG+AGG | - | tig0024442:41943-41962 | Msa1417110:CDS | 50.0% | |
| CATATCGGACACTTCGTGAC+AGG | - | tig0024442:41984-42003 | Msa1417110:CDS | 50.0% | |
| TATCGGACACTTCGTGACAG+GGG | - | tig0024442:41986-42005 | Msa1417110:CDS | 50.0% | |
| AGGACTTGATCAGCAGGGTA+TGG | + | tig0024442:42013-42032 | None:intergenic | 50.0% | |
| ACACCCTCACTGTCTATCCT+AGG | + | tig0024442:42585-42604 | None:intergenic | 50.0% | |
| !! | GACAGTGAGGGTGTTATGTG+TGG | - | tig0024442:42591-42610 | Msa1417110:CDS | 50.0% |
| !! | CAGTGAGGGTGTTATGTGTG+GGG | - | tig0024442:42593-42612 | Msa1417110:CDS | 50.0% |
| CGTCGGAAGTGAAGCTAACT+GGG | - | tig0024442:42662-42681 | Msa1417110:CDS | 50.0% | |
| GTGAAGCTAACTGGGCTACT+TGG | - | tig0024442:42670-42689 | Msa1417110:CDS | 50.0% | |
| GAAGCTAACTGGGCTACTTG+GGG | - | tig0024442:42672-42691 | Msa1417110:CDS | 50.0% | |
| TTAGCTTCACTTCCGACGCG+TGG | + | tig0024442:42660-42679 | None:intergenic | 55.0% | |
| GCGTCGGAAGTGAAGCTAAC+TGG | - | tig0024442:42661-42680 | Msa1417110:CDS | 55.0% | |
| TTAGCTTCACTTCCGACGCG+TGG | + | tig0024442:42660-42679 | None:intergenic | 55.0% | |
| GCGTCGGAAGTGAAGCTAAC+TGG | - | tig0024442:42661-42680 | Msa1417110:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024442 | gene | 41021 | 42897 | 41021 | ID=Msa1417110;Name=Msa1417110 |
| tig0024442 | mRNA | 41021 | 42897 | 41021 | ID=Msa1417110-mRNA-1;Parent=Msa1417110;Name=Msa1417110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=86|1|1|1|0.75|0.6|5|196|251 |
| tig0024442 | exon | 41021 | 41404 | 41021 | ID=Msa1417110-mRNA-1:exon:23237;Parent=Msa1417110-mRNA-1 |
| tig0024442 | exon | 41604 | 41724 | 41604 | ID=Msa1417110-mRNA-1:exon:23236;Parent=Msa1417110-mRNA-1 |
| tig0024442 | exon | 41816 | 42056 | 41816 | ID=Msa1417110-mRNA-1:exon:23235;Parent=Msa1417110-mRNA-1 |
| tig0024442 | exon | 42512 | 42772 | 42512 | ID=Msa1417110-mRNA-1:exon:23234;Parent=Msa1417110-mRNA-1 |
| tig0024442 | exon | 42867 | 42897 | 42867 | ID=Msa1417110-mRNA-1:exon:23233;Parent=Msa1417110-mRNA-1 |
| tig0024442 | five_prime_UTR | 42867 | 42897 | 42867 | ID=Msa1417110-mRNA-1:five_prime_utr;Parent=Msa1417110-mRNA-1 |
| tig0024442 | five_prime_UTR | 42718 | 42772 | 42718 | ID=Msa1417110-mRNA-1:five_prime_utr;Parent=Msa1417110-mRNA-1 |
| tig0024442 | CDS | 42512 | 42717 | 42512 | ID=Msa1417110-mRNA-1:cds;Parent=Msa1417110-mRNA-1 |
| tig0024442 | CDS | 41816 | 42056 | 41816 | ID=Msa1417110-mRNA-1:cds;Parent=Msa1417110-mRNA-1 |
| tig0024442 | CDS | 41604 | 41724 | 41604 | ID=Msa1417110-mRNA-1:cds;Parent=Msa1417110-mRNA-1 |
| tig0024442 | CDS | 41217 | 41404 | 41217 | ID=Msa1417110-mRNA-1:cds;Parent=Msa1417110-mRNA-1 |
| tig0024442 | three_prime_UTR | 41021 | 41216 | 41021 | ID=Msa1417110-mRNA-1:three_prime_utr;Parent=Msa1417110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
