AlfalfaGEDB | Msa1041120

M. sativa cultivar zhongmu-4 / Msa1041120

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041120	QUD39823.1	86.133	375	18	6	1	368	1	348	0.0	610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041120	sp\|Q9FJ07\|MY111_ARATH	67.052	173	49	1	1	165	1	173	1.69e-75	239

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041120	G7KSR7	86.933	375	22	6	1	368	1	355	0.0	608

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TFs/TRs:

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Gene ID	Type	Classification
Msa1041120	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0538570	Msa1041120	0.801447	8.966718e-49	-8.615850e-47
Msa0599690	Msa1041120	0.802337	5.885893e-49	-8.615850e-47
Msa0843290	Msa1041120	0.803297	3.728849e-49	-8.615850e-47
Msa0867150	Msa1041120	0.923322	3.095112e-89	-8.615850e-47
Msa1041100	Msa1041120	0.991123	5.230828e-186	-8.615850e-47
Msa1041120	Msa1061180	0.804360	2.242040e-49	-8.615850e-47
Msa1041120	Msa1362040	0.987730	2.523207e-171	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041120	MtrunA17_Chr7g0269831	86.933	375	22	6	1	368	1	355	0.0	608
Msa1041120	MtrunA17_Chr1g0194951	47.074	393	159	9	1	368	1	369	2.51e-101	304
Msa1041120	MtrunA17_Chr4g0068061	60.335	179	67	2	1	179	1	175	3.23e-71	226
Msa1041120	MtrunA17_Chr7g0275911	71.552	116	33	0	1	116	1	116	8.23e-61	196
Msa1041120	MtrunA17_Chr8g0346561	71.552	116	33	0	1	116	1	116	1.19e-59	194
Msa1041120	MtrunA17_Chr4g0070641	63.433	134	49	0	1	134	1	134	6.48e-59	188
Msa1041120	MtrunA17_Chr1g0167661	64.394	132	47	0	1	132	1	132	1.17e-58	191
Msa1041120	MtrunA17_Chr4g0070611	63.433	134	49	0	1	134	1	134	2.32e-58	191
Msa1041120	MtrunA17_Chr1g0167691	69.828	116	35	0	1	116	1	116	3.82e-57	186
Msa1041120	MtrunA17_Chr3g0131121	69.492	118	36	0	1	118	1	118	4.15e-57	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041120	AT5G49330.1	67.052	173	49	1	1	165	1	173	1.72e-76	239
Msa1041120	AT2G47460.1	41.162	396	178	17	1	368	1	369	3.26e-74	235
Msa1041120	AT3G62610.1	39.900	401	148	16	1	368	1	341	7.16e-67	215
Msa1041120	AT4G38620.1	65.649	131	45	0	1	131	1	131	3.35e-58	191
Msa1041120	AT4G09460.1	60.284	141	56	0	1	141	1	141	4.27e-58	189
Msa1041120	AT2G16720.1	53.846	169	73	1	1	164	1	169	4.46e-58	190
Msa1041120	AT1G35515.1	71.552	116	33	0	1	116	1	116	5.79e-58	187
Msa1041120	AT3G61250.1	52.903	155	68	1	1	155	1	150	1.13e-56	187
Msa1041120	AT1G22640.1	62.791	129	47	1	1	129	1	128	4.44e-56	184
Msa1041120	AT2G31180.1	57.823	147	58	2	1	143	1	147	2.05e-55	182

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Find 108 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCTAACTTGGTTGT+TGG	0.455589	7_1:-78618297	Msa1041120:CDS
AAACCCACTTTCTCACAACA+AGG	0.632503	7_1:+78620367	None:intergenic
AAATTACATATTCTTAGATA+TGG	0.236268	7_1:-78620398	Msa1041120:exon
AACTTCAAAGACTTCGGGTT+TGG	0.304668	7_1:-78618396	Msa1041120:CDS
AAGATGAAAACATGCTAACT+TGG	0.500426	7_1:-78618304	Msa1041120:CDS
AAGGTGGTAGAACTAGTCGA+TGG	0.608334	7_1:-78618856	Msa1041120:CDS
AATGTAGACAATAGTAATGT+TGG	0.512394	7_1:+78620474	None:intergenic
AATGTTGGAGATGGCTAAAT+GGG	0.448454	7_1:+78620489	None:intergenic
AATTACATATTCTTAGATAT+GGG	0.440844	7_1:-78620397	Msa1041120:exon
ACACCTCCCAAACGTAAAGG+TGG	0.689755	7_1:-78618872	Msa1041120:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCCCAAAATAAAATGT+CGG	+	chr7_1:78618418-78618437	None:intergenic	30.0%
CTTAGTATGCAGTCAATTTA+AGG	+	chr7_1:78618846-78618865	None:intergenic	30.0%
CTGTCATAATGTCAAACAAA+TGG	-	chr7_1:78619313-78619332	Msa1041120:intron	30.0%
CAATTGAAGCAAAATACACA+AGG	+	chr7_1:78619441-78619460	None:intergenic	30.0%
ACAACGAGATTAAAAACTAC+TGG	-	chr7_1:78619581-78619600	Msa1041120:intron	30.0%
TATTATCATGGATACTTTGG+AGG	-	chr7_1:78620011-78620030	Msa1041120:intron	30.0%
GTTGTGATTAATGAAAGAGT+GGG	-	chr7_1:78620069-78620088	Msa1041120:CDS	30.0%
TTGTGATTAATGAAAGAGTG+GGG	-	chr7_1:78620070-78620089	Msa1041120:CDS	30.0%
TTCTTCAACTTCAAAGACTT+CGG	-	chr7_1:78620176-78620195	Msa1041120:intron	30.0%
TTTGGATGATAACTTGGATT+GGG	-	chr7_1:78620200-78620219	Msa1041120:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	78618032	78620568	78618032	ID=Msa1041120;Name=Msa1041120
chr7_1	mRNA	78618032	78620568	78618032	ID=Msa1041120-mRNA-1;Parent=Msa1041120;Name=Msa1041120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=167\|1\|1\|1\|1\|1\|3\|182\|368
chr7_1	exon	78618032	78619057	78618032	ID=Msa1041120-mRNA-1:exon:21060;Parent=Msa1041120-mRNA-1
chr7_1	exon	78620029	78620158	78620029	ID=Msa1041120-mRNA-1:exon:21059;Parent=Msa1041120-mRNA-1
chr7_1	exon	78620269	78620568	78620269	ID=Msa1041120-mRNA-1:exon:21058;Parent=Msa1041120-mRNA-1
chr7_1	five_prime_UTR	78620402	78620568	78620402	ID=Msa1041120-mRNA-1:five_prime_utr;Parent=Msa1041120-mRNA-1
chr7_1	CDS	78620269	78620401	78620269	ID=Msa1041120-mRNA-1:cds;Parent=Msa1041120-mRNA-1
chr7_1	CDS	78620029	78620158	78620029	ID=Msa1041120-mRNA-1:cds;Parent=Msa1041120-mRNA-1
chr7_1	CDS	78618214	78619057	78618214	ID=Msa1041120-mRNA-1:cds;Parent=Msa1041120-mRNA-1
chr7_1	three_prime_UTR	78618032	78618213	78618032	ID=Msa1041120-mRNA-1:three_prime_utr;Parent=Msa1041120-mRNA-1

Gene Sequence

>Msa1041120

ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGTTTGAAGAAGGGAAGATGGACCGCAGAGGAGGATGAAATTTTGACCCAATATGTTAAGGCAAATGGGGAAGGTTCTTGGAGGTCATTGCCCAAAAATGCAGGTTTGCTTAGATGTGGTAAAAGTTGTAGATTAAGATGGATTAACTATTTGAGAGCTGATCTCAAAAGGGGAAATATTTCTTCTGAAGAGGAAAGTATCATTGTCAAGATGCATGCTTCTTTTGGCAACAGGTGGTCCTTGATTGCAAGTCACTTGCCAGGCAGAACAGACAACGAGATTAAAAACTACTGGAACTCACACTTGAGTAGGAAAGTTTACAGCTTCCGAGGAACATCAACAAATTATAATAATATCAAAGAGATAGAGATTCCATCAGAAGGAATCATAGTTGATACACCTCCCAAACGTAAAGGTGGTAGAACTAGTCGATGGGCTATGAAGAAGAACAAACGATATATATCCCAAAGAAGTGAACCTGCTGCAATTGTTACCCTTCCACCCACCCCTGCACTAGAGAACGAGAAAATGGTTATGGGCTCAGTAAATGGGCCTTGTTCTAGTGGTGAAGATGGCCCAAATAGGTTGCAATTACCGTGCATTGACGGTGAAAATAATAGTAGTATTGAAGTTGATTGTGACCGTATGTTGGGACCAGATCTGAAGGTCATTAATGATGGTGAGTTGTTAGATTTTAATGATATTATCATGGATACTTTGGAGGTGGAAGAAGAAAAAGAAAGTAATGATGAAAATGTGGTTGTGATTAATGAAAGAGTGGGGGACAAAGGCACCAACACAAATGGAACAAAGGGCATAGAGAGAAATAACAATGTGACGAATCAATGTTCGAATGAGGAGTTCAATTCTTCAACTTCAAAGACTTCGGGTTTGGATGATAACTTGGATTGGGAGAGTGTTATGCCATTGTTGAATCAGAAAGGTCAATCGTTGTTGTGGGAGCAAGATGAAAACATGCTAACTTGGTTGTTGGATGATGATCAATGGGAAAAGGATTTTCAGAGATTTCGAGATATTGATCCTCAGAAGCAAAATGCTTTGGTTTCTTGGTTTTAA

Protein sequence

>Msa1041120

MGRAPCCEKVGLKKGRWTAEEDEILTQYVKANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISSEEESIIVKMHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSFRGTSTNYNNIKEIEIPSEGIIVDTPPKRKGGRTSRWAMKKNKRYISQRSEPAAIVTLPPTPALENEKMVMGSVNGPCSSGEDGPNRLQLPCIDGENNSSIEVDCDRMLGPDLKVINDGELLDFNDIIMDTLEVEEEKESNDENVVVINERVGDKGTNTNGTKGIERNNNVTNQCSNEEFNSSTSKTSGLDDNLDWESVMPLLNQKGQSLLWEQDENMLTWLLDDDQWEKDFQRFRDIDPQKQNALVSWF*