AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0599690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599690 MtrunA17_Chr4g0024351 93.605 735 13 4 1 702 1 734 0.0 1395
Msa0599690 MtrunA17_Chr2g0322731 81.081 740 95 7 3 702 36 770 0.0 1192
Msa0599690 MtrunA17_Chr8g0350321 54.424 746 270 11 17 701 74 810 0.0 775
Msa0599690 MtrunA17_Chr7g0246631 56.566 693 246 10 60 701 90 778 0.0 770
Msa0599690 MtrunA17_Chr1g0203671 50.614 733 296 11 28 697 60 789 0.0 712
Msa0599690 MtrunA17_Chr5g0394111 52.553 666 267 10 45 697 17 646 0.0 670
Msa0599690 MtrunA17_Chr6g0481041 46.730 734 309 12 44 702 2 728 0.0 662
Msa0599690 MtrunA17_Chr5g0410711 43.329 757 362 16 5 701 33 782 0.0 612
Msa0599690 MtrunA17_Chr2g0331581 45.510 657 330 10 65 700 143 792 0.0 598
Msa0599690 MtrunA17_Chr6g0472471 43.164 746 333 15 28 697 35 765 0.0 580
Msa0599690 MtrunA17_Chr7g0224451 43.133 466 219 12 44 492 2 438 1.56e-121 370
Msa0599690 MtrunA17_Chr2g0292731 36.646 483 295 7 222 697 70 548 3.77e-99 315
Msa0599690 MtrunA17_Chr2g0292741 37.910 488 277 12 222 697 62 535 1.28e-97 311
Msa0599690 MtrunA17_Chr7g0224481 42.222 360 170 10 44 387 2 339 3.59e-83 266
Msa0599690 MtrunA17_Chr7g0224491 45.768 319 138 10 390 698 1 294 2.14e-77 250
Msa0599690 MtrunA17_Chr2g0292761 31.966 585 331 18 140 699 1 543 9.07e-73 246
Msa0599690 MtrunA17_Chr2g0319671 47.647 170 85 2 269 438 103 268 1.85e-48 172
Msa0599690 MtrunA17_Chr5g0419821 48.387 124 63 1 59 181 31 154 7.72e-36 133
Msa0599690 MtrunA17_Chr2g0319691 51.261 119 58 0 330 448 1 119 1.71e-34 128
Msa0599690 MtrunA17_Chr2g0319681 34.335 233 146 3 472 701 1 229 2.90e-34 131
Msa0599690 MtrunA17_Chr2g0319701 36.522 230 135 5 476 701 5 227 2.97e-34 131
Msa0599690 MtrunA17_Chr1g0205981 39.378 193 79 5 116 275 1 188 5.12e-29 114
Msa0599690 MtrunA17_Chr4g0028991 22.764 738 421 24 45 698 9 681 1.79e-28 122
Msa0599690 MtrunA17_Chr7g0224461 47.934 121 47 5 586 697 1 114 7.48e-22 91.3
Msa0599690 MtrunA17_Chr2g0326731 23.256 516 305 17 64 546 23 480 6.58e-21 98.2
Msa0599690 MtrunA17_Chr2g0304191 31.618 136 83 3 224 354 1 131 1.31e-15 74.3
Msa0599690 MtrunA17_Chr7g0224431 34.375 160 64 4 239 397 1 120 1.95e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599690 AT1G05230.8 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.4 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.9 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.10 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.7 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.11 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.2 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.6 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.5 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.1 73.414 741 138 8 1 702 1 721 0.0 1082
Msa0599690 AT1G05230.3 73.144 741 138 9 1 702 1 719 0.0 1073
Msa0599690 AT4G21750.2 68.653 772 162 11 1 702 1 762 0.0 1028
Msa0599690 AT4G21750.1 68.653 772 162 11 1 702 1 762 0.0 1028
Msa0599690 AT4G21750.3 68.653 772 162 11 1 702 1 762 0.0 1028
Msa0599690 AT4G21750.4 68.653 772 162 11 1 702 1 762 0.0 1028
Msa0599690 AT4G04890.2 70.659 743 166 15 1 698 1 736 0.0 1028
Msa0599690 AT4G04890.1 70.659 743 166 15 1 698 1 736 0.0 1028
Msa0599690 AT1G05230.12 71.753 616 122 7 1 577 1 603 0.0 888
Msa0599690 AT3G61150.1 51.934 724 285 8 39 701 86 807 0.0 733
Msa0599690 AT4G00730.1 53.675 721 283 12 20 701 94 802 0.0 720
Msa0599690 AT2G32370.1 52.496 701 286 11 32 702 42 725 0.0 717
Msa0599690 AT1G73360.1 47.406 694 306 9 61 702 32 718 0.0 623
Msa0599690 AT1G17920.2 45.726 702 317 11 43 702 7 686 0.0 590
Msa0599690 AT1G17920.1 45.726 702 317 11 43 702 7 686 0.0 590
Msa0599690 AT5G52170.2 45.677 694 321 13 28 697 22 683 0.0 580
Msa0599690 AT5G52170.3 45.821 694 315 15 28 697 22 678 0.0 575
Msa0599690 AT5G52170.1 45.821 694 315 15 28 697 22 678 0.0 575
Msa0599690 AT5G46880.3 42.318 716 332 15 54 699 104 808 0.0 557
Msa0599690 AT5G46880.1 42.318 716 332 15 54 699 104 808 0.0 557
Msa0599690 AT5G46880.2 42.318 716 332 15 54 699 104 808 0.0 557
Msa0599690 AT1G79840.1 43.239 673 341 11 51 700 91 745 0.0 545
Msa0599690 AT1G79840.3 43.239 673 341 11 51 700 33 687 0.0 543
Msa0599690 AT1G79840.6 43.239 673 341 11 51 700 33 687 0.0 543
Msa0599690 AT1G79840.2 43.239 673 341 11 51 700 120 774 0.0 543
Msa0599690 AT4G17710.1 42.018 664 324 12 54 697 81 703 1.01e-172 511
Msa0599690 AT1G79840.4 44.037 545 268 10 51 573 91 620 1.42e-153 459
Msa0599690 AT3G03260.1 38.601 715 357 19 45 698 2 695 3.54e-150 453
Msa0599690 AT4G00730.2 48.812 463 190 8 28 452 103 556 7.40e-143 430
Msa0599690 AT4G25530.1 38.636 660 365 9 61 697 40 682 2.39e-142 432
Msa0599690 AT5G17320.1 35.484 713 371 19 59 700 24 718 1.36e-128 398
Msa0599690 AT1G34650.1 34.551 712 385 18 55 700 12 708 7.77e-119 372
Msa0599690 AT3G03260.2 38.504 548 279 15 45 545 2 538 1.37e-111 348
Msa0599690 AT1G79840.5 43.396 424 203 9 51 452 91 499 8.17e-108 337
Msa0599690 AT5G07260.1 29.942 521 311 20 128 634 11 491 2.29e-53 193
Msa0599690 AT5G07260.2 29.808 520 308 20 128 634 11 486 7.32e-53 191
Msa0599690 AT4G32880.1 23.856 721 405 25 64 701 15 674 4.50e-32 133
Msa0599690 AT1G52150.3 23.142 713 413 25 64 698 17 672 3.10e-27 118
Msa0599690 AT1G52150.1 23.142 713 413 25 64 698 17 672 4.07e-27 118
Msa0599690 AT1G52150.2 23.109 714 413 25 64 698 17 673 4.53e-27 118
Msa0599690 AT5G60690.1 23.047 512 303 17 64 546 25 474 7.75e-23 104

Find 222 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTTAATCATTCATTTC+TGG 0.119880 4_2:+39819787 Msa0599690:five_prime_UTR
TGATTGCCAAAACCAATTTC+TGG 0.191828 4_2:-39822737 None:intergenic
TCCTTCCTTTGCTTGTCATC+TGG 0.193302 4_2:-39821732 None:intergenic
ACATACTCTTCCTCCCTTCT+TGG 0.195793 4_2:-39824785 None:intergenic
ATTCTTACGATTCCATTTCT+TGG 0.235108 4_2:-39821552 None:intergenic
TACCCTATCAAAATTTCTTT+TGG 0.236014 4_2:+39826800 Msa0599690:three_prime_UTR
CTCCCACCGCGTCCAGAAAT+TGG 0.236347 4_2:+39822725 Msa0599690:CDS
TTCTAAGAGGATTAATTATA+AGG 0.239510 4_2:+39826720 Msa0599690:three_prime_UTR
TTGAGCTTCAAGACTAATAA+TGG 0.252984 4_2:+39825856 Msa0599690:three_prime_UTR
ATGTTGCTCTGGCTTGAATT+TGG 0.258103 4_2:-39825481 None:intergenic
AGGTGGTGAGGAACTTAATT+AGG 0.263635 4_2:+39826647 Msa0599690:three_prime_UTR
CCGCGTCCAGAAATTGGTTT+TGG 0.273136 4_2:+39822731 Msa0599690:CDS
AAGGAGTTAAGCAGAGAGTT+AGG 0.279953 4_2:+39821750 Msa0599690:CDS
CCTTCCTTTGCTTGTCATCT+GGG 0.284990 4_2:-39821731 None:intergenic
GCAGCTATGGAAGAGCTTAT+TGG 0.288607 4_2:+39822963 Msa0599690:CDS
TTAAAGCAATGGTGTGTCTT+AGG 0.291002 4_2:-39826950 None:intergenic
AGCCTTTGCAAGTCAAGTTT+TGG 0.294391 4_2:+39821778 Msa0599690:CDS
CATGAAGGTGGTGCTGCTTC+TGG 0.302796 4_2:+39821469 Msa0599690:CDS
CACAGATGGGTGATCCTCTT+TGG 0.302834 4_2:+39822991 Msa0599690:CDS
GGCAGTTGTGGATGTGTCTT+TGG 0.303977 4_2:+39823751 Msa0599690:CDS
TTTCGAAGCACTCGTCTTCT+CGG 0.304296 4_2:-39821420 None:intergenic
CAGCTATGGAAGAGCTTATT+GGG 0.306565 4_2:+39822964 Msa0599690:CDS
ATCGACTTACATTTACTCTA+AGG 0.323318 4_2:-39825210 None:intergenic
CATTTGAAACCATTAGGTTT+AGG 0.324939 4_2:-39823092 None:intergenic
TAGGCTTAATTTACAAGAAT+GGG 0.331327 4_2:+39826666 Msa0599690:three_prime_UTR
GAGGATTAATTATAAGGTTC+GGG 0.337570 4_2:+39826726 Msa0599690:three_prime_UTR
ACGATTCCATTTCTTGGATC+TGG 0.342668 4_2:-39821546 None:intergenic
GGCGGTGAAACTGGCGGAGG+AGG 0.346393 4_2:+39825670 Msa0599690:CDS
AAAGGGAGCAAAACCCTTGC+AGG 0.353053 4_2:+39820344 Msa0599690:five_prime_UTR
AAAACTTGTGTTGGTGGAAC+AGG 0.354087 4_2:-39824990 None:intergenic
GAGCTGATAACATGAGGTAT+AGG 0.357648 4_2:+39821971 Msa0599690:CDS
GCTATGAATGTAGTTCTAAA+TGG 0.363093 4_2:+39825574 Msa0599690:CDS
ATTGCAAATGGACGCGATAC+TGG 0.363551 4_2:+39825172 Msa0599690:CDS
AGAGGATTAATTATAAGGTT+CGG 0.366136 4_2:+39826725 Msa0599690:three_prime_UTR
AATGGAGTCGGCGGTGAAAC+TGG 0.366633 4_2:+39825661 Msa0599690:CDS
CAGTGGGATATTCTTTCTAA+TGG 0.366838 4_2:+39825124 Msa0599690:intron
GGAAGAAGTGCTACATAATC+TGG 0.371226 4_2:-39825604 None:intergenic
GGTGAAACTGGCGGAGGAGG+GGG 0.372896 4_2:+39825673 Msa0599690:CDS
TTAGGCTTAATTTACAAGAA+TGG 0.378497 4_2:+39826665 Msa0599690:three_prime_UTR
ACAATACCAGGAGGTCTTCC+AGG 0.379421 4_2:-39824939 None:intergenic
CAGAAGCAGCACCACCTTCA+TGG 0.382160 4_2:-39821468 None:intergenic
AATACCTTTGAGTAACCATT+TGG 0.385606 4_2:-39823842 None:intergenic
TGAAGAGGTTGCATTGCTAA+TGG 0.395459 4_2:+39826611 Msa0599690:three_prime_UTR
AACAACATCCTGACGGGACC+TGG 0.395943 4_2:+39823729 Msa0599690:CDS
TGGACTAATTAGATATGGTT+AGG 0.396599 4_2:+39826820 Msa0599690:three_prime_UTR
CTCGTGAGAGTTACTTTGTA+AGG 0.399857 4_2:+39823699 Msa0599690:CDS
AGAGAGTGGGGAACAGATAG+AGG 0.400716 4_2:-39819607 None:intergenic
AGGTCGTTTCCTCGTGGGAT+TGG 0.405874 4_2:+39823068 Msa0599690:CDS
GGTAGTAAGGTCATAGAGTT+AGG 0.409823 4_2:-39826781 None:intergenic
GAAGAGGTTGCATTGCTAAT+GGG 0.410142 4_2:+39826612 Msa0599690:three_prime_UTR
TGTGGTGGTCCAACAGCTAT+AGG 0.411505 4_2:+39822024 Msa0599690:CDS
GTAGTATTAACATGTTGCTC+TGG 0.413248 4_2:-39825492 None:intergenic
CAATTCTATTGCAGTTTACA+AGG 0.413860 4_2:+39826587 Msa0599690:intron
AGAATCAAAGCTTCGCTGTC+TGG 0.414774 4_2:+39825820 Msa0599690:CDS
GGGAACAGATAGAGGAAGAA+AGG 0.415090 4_2:-39819599 None:intergenic
GCTTCGCATTTGAAACCATT+AGG 0.415897 4_2:-39823098 None:intergenic
GTTAGCACTGGACATGCATT+TGG 0.416621 4_2:+39824495 Msa0599690:CDS
AGATGTAGAAGAAGGCCTTC+TGG 0.418212 4_2:+39823800 Msa0599690:CDS
AGCTTAATCCTCAACTGAAA+AGG 0.423530 4_2:+39820326 Msa0599690:five_prime_UTR
GCTATCCTGCCTGATGGAAA+TGG 0.423831 4_2:+39825637 Msa0599690:CDS
CAATGGTCAACGGTGTTTGC+TGG 0.428126 4_2:+39823410 Msa0599690:CDS
TATGTAGCACTTCTTCCATC+AGG 0.428228 4_2:+39825610 Msa0599690:CDS
CTTTGCTTGTCATCTGGGTG+TGG 0.428946 4_2:-39821726 None:intergenic
TTAATGAAGATGAATATGTT+AGG 0.431451 4_2:+39823048 Msa0599690:CDS
AGCTGATAACATGAGGTATA+GGG 0.432619 4_2:+39821972 Msa0599690:CDS
TTTGATTCTAACTCTTTGAC+AGG 0.434394 4_2:+39820449 Msa0599690:five_prime_UTR
GCTGTTGGACCACCACAATT+AGG 0.438343 4_2:-39822018 None:intergenic
CGGTGAAACTGGCGGAGGAG+GGG 0.441966 4_2:+39825672 Msa0599690:CDS
GGGATTGGACCTAAACCTAA+TGG 0.443923 4_2:+39823083 Msa0599690:CDS
CATTTGATGAACATCATTTG+AGG 0.446985 4_2:+39822055 Msa0599690:CDS
GAGGAAGAGTATGTTGAAAC+TGG 0.447997 4_2:+39824794 Msa0599690:CDS
GGTCGGAATGTTTGTTGCCA+TGG 0.448476 4_2:-39824571 None:intergenic
GTGTTGTCAACTGGAGTGGC+AGG 0.448507 4_2:+39823461 Msa0599690:CDS
AATGTTTCAGTCAAACCTCT+TGG 0.448780 4_2:+39821333 Msa0599690:exon
CTGCCTGATGGAAATGGAAA+TGG 0.449683 4_2:+39825643 Msa0599690:CDS
CACACATGGACAACACTGTC+TGG 0.450880 4_2:+39824867 Msa0599690:CDS
CACTCGTCTTCTCGGATTCG+AGG 0.451326 4_2:-39821412 None:intergenic
TATTTGTTGCAGTTTCTTCA+AGG 0.453245 4_2:+39821698 Msa0599690:intron
CCAACCGCTAAACTCTCTCT+TGG 0.459578 4_2:+39825754 Msa0599690:CDS
TGCATTTGGTGCAAAACGTT+GGG 0.460920 4_2:+39824509 Msa0599690:CDS
GAAGGAAGAAAGAGAGAGAG+TGG 0.463579 4_2:-39819621 None:intergenic
GAAATGGCGCACATTGCAAA+TGG 0.463996 4_2:+39825160 Msa0599690:CDS
ACAATCTGCTTGTATAGATT+AGG 0.464761 4_2:-39824474 None:intergenic
CAGTCAAACCTCTTGGAAGC+TGG 0.469434 4_2:+39821340 Msa0599690:CDS
GCTTAATCCTCAACTGAAAA+GGG 0.469470 4_2:+39820327 Msa0599690:five_prime_UTR
TCAGCACCAGATCCAAGAAA+TGG 0.471078 4_2:+39821540 Msa0599690:CDS
CTACATCTAGACGAAGGACT+AGG 0.475265 4_2:-39823785 None:intergenic
TGGACAACACTGTCTGGAAC+AGG 0.477040 4_2:+39824873 Msa0599690:CDS
ATTCTAACTCTTTGACAGGT+TGG 0.477783 4_2:+39820453 Msa0599690:five_prime_UTR
AGGAGTTAAGCAGAGAGTTA+GGG 0.480092 4_2:+39821751 Msa0599690:CDS
CGTAAGAGTGTTGATGATCC+TGG 0.485185 4_2:+39824921 Msa0599690:CDS
GACATTTCACCTATAGCTGT+TGG 0.486224 4_2:-39822033 None:intergenic
CTCTCACGAGTCGGCACAAG+AGG 0.489363 4_2:-39823686 None:intergenic
GGAACAGATAGAGGAAGAAA+GGG 0.490510 4_2:-39819598 None:intergenic
GTTTCAAATGCGAAGCTTCG+AGG 0.490695 4_2:+39823105 Msa0599690:CDS
ACAACTGCCCAGGTCCCGTC+AGG 0.492368 4_2:-39823737 None:intergenic
GCAGACACAACATGAACGTT+CGG 0.496911 4_2:+39821912 Msa0599690:intron
ATGTTTGAATAGTTTACCAC+TGG 0.497257 4_2:-39822692 None:intergenic
GCGGTGAAACTGGCGGAGGA+GGG 0.500439 4_2:+39825671 Msa0599690:CDS
CATTTCCATTTCCATCAGGC+AGG 0.501486 4_2:-39825642 None:intergenic
GTCAACATTTAATATACCTA+GGG 0.503569 4_2:-39826759 None:intergenic
AAGGAAGAAAGAGAGAGAGT+GGG 0.503955 4_2:-39819620 None:intergenic
ACTCCATTTCCATTTCCATC+AGG 0.505159 4_2:-39825646 None:intergenic
ATATATACCGCCAACATCTA+CGG 0.505453 4_2:-39824592 None:intergenic
ATGTTAGGTCGTTTCCTCGT+GGG 0.513468 4_2:+39823063 Msa0599690:CDS
TTTCTTGCGTATAACCTGCA+AGG 0.514789 4_2:-39820358 None:intergenic
GATGATCCTGGAAGACCTCC+TGG 0.514883 4_2:+39824933 Msa0599690:CDS
CATTTAATTGTTACTATGTG+AGG 0.515797 4_2:+39826921 Msa0599690:three_prime_UTR
GCTTATTGGGATGGCACAGA+TGG 0.516003 4_2:+39822977 Msa0599690:CDS
CTCATTTGTTATCTATGCAC+CGG 0.516034 4_2:+39825540 Msa0599690:CDS
GAGAGTGTAACAGATGCAAC+AGG 0.516631 4_2:+39825517 Msa0599690:CDS
TGACGGGACCTGGGCAGTTG+TGG 0.518596 4_2:+39823739 Msa0599690:CDS
TTAATTCAAGAGATGCCAAA+TGG 0.518826 4_2:+39823827 Msa0599690:CDS
ACTGTGGAAGTGTTGTCAAC+TGG 0.520701 4_2:+39823452 Msa0599690:CDS
AACCAAAACTTGACTTGCAA+AGG 0.523378 4_2:-39821780 None:intergenic
AGAACAGTAGCAGCTCCATC+AGG 0.525133 4_2:-39823026 None:intergenic
CAGCAAACACCGTTGACCAT+TGG 0.528564 4_2:-39823409 None:intergenic
TACAAGCAGATTGTTAGCAC+TGG 0.528579 4_2:+39824483 Msa0599690:CDS
AAACAAAAGGACTCAGATGA+AGG 0.533633 4_2:+39821806 Msa0599690:CDS
TTCTTGCGTATAACCTGCAA+GGG 0.534308 4_2:-39820357 None:intergenic
CAAAATACGTCAATATCACT+TGG 0.538257 4_2:-39827030 None:intergenic
GCCTAGGCTAAACAAAAGAC+TGG 0.540458 4_2:-39826882 None:intergenic
GTTGAAACTGGCAGAGAGAA+TGG 0.540573 4_2:+39824806 Msa0599690:CDS
GAAAGGTTAGAAGAAAGAAA+CGG 0.541656 4_2:-39819669 None:intergenic
CCAAAACCAATTTCTGGACG+CGG 0.541993 4_2:-39822731 None:intergenic
TGCAGTTTACAAGGATGAAG+AGG 0.543194 4_2:+39826596 Msa0599690:intron
TGGTGGAGTTGTGCAAGAAA+TGG 0.544913 4_2:+39825144 Msa0599690:CDS
TCTGAAAAGCGACGGTCAGA+AGG 0.545806 4_2:-39825714 None:intergenic
TTTGCATCATCTCTAATGGA+TGG 0.546858 4_2:-39821369 None:intergenic
GAAGACGAGTGCTTCGAAAG+TGG 0.546911 4_2:+39821424 Msa0599690:CDS
TAGTGATAACAAACCAAGAA+GGG 0.547679 4_2:+39824772 Msa0599690:intron
AACATTCCGACCGTAGATGT+TGG 0.548785 4_2:+39824582 Msa0599690:CDS
TCTGGACGCGGTGGGAGAGA+TGG 0.548949 4_2:-39822719 None:intergenic
ATACTTCAAAACTAAAGCCT+AGG 0.549257 4_2:-39826898 None:intergenic
TAACTCTTTGACAGGTTGGT+AGG 0.549333 4_2:+39820457 Msa0599690:five_prime_UTR
AGGAAGAAAGAGAGAGAGTG+GGG 0.550231 4_2:-39819619 None:intergenic
CTTTAGATCGACAATGTGAA+AGG 0.551620 4_2:+39824538 Msa0599690:CDS
TTAGTGATAACAAACCAAGA+AGG 0.552241 4_2:+39824771 Msa0599690:intron
ACATGTAGAAGTGGATGAGA+GGG 0.555176 4_2:+39824446 Msa0599690:CDS
GGTCAACATTTAATATACCT+AGG 0.556594 4_2:-39826760 None:intergenic
TGGTTAAGTACTACACCTGA+TGG 0.558663 4_2:+39823011 Msa0599690:CDS
TACATCTAGACGAAGGACTA+GGG 0.561257 4_2:-39823784 None:intergenic
TTTCAAATGCGAAGCTTCGA+GGG 0.561654 4_2:+39823106 Msa0599690:CDS
TGGGATATTCTTTCTAATGG+TGG 0.562144 4_2:+39825127 Msa0599690:CDS
CTTGGATCTGGTGCTGAGTG+TGG 0.562215 4_2:-39821534 None:intergenic
AGACACATCCACAACTGCCC+AGG 0.563303 4_2:-39823747 None:intergenic
AAGAGGTTGCATTGCTAATG+GGG 0.565195 4_2:+39826613 Msa0599690:three_prime_UTR
TTCATAGCAACTATATCTAC+CGG 0.565561 4_2:-39825559 None:intergenic
GGCAGGATAGCAAATCCTGA+TGG 0.565913 4_2:-39825625 None:intergenic
ATGCATTTGGTGCAAAACGT+TGG 0.567718 4_2:+39824508 Msa0599690:CDS
CAACCTTGTTGAGATTCTCA+TGG 0.570569 4_2:+39823157 Msa0599690:CDS
ATAATGAGAAATTAAAGCAA+TGG 0.575101 4_2:-39826961 None:intergenic
ATTTGAGGCTTGAAAATGCA+AGG 0.576070 4_2:+39822070 Msa0599690:CDS
CCAAGAGAGAGTTTAGCGGT+TGG 0.578033 4_2:-39825754 None:intergenic
TGTTGAGATTCTCATGGATG+TGG 0.578448 4_2:+39823163 Msa0599690:CDS
ACAACATCCTGACGGGACCT+GGG 0.580233 4_2:+39823730 Msa0599690:CDS
ACTCGTCTTCTCGGATTCGA+GGG 0.584124 4_2:-39821411 None:intergenic
AACATGTAGAAGTGGATGAG+AGG 0.585664 4_2:+39824445 Msa0599690:CDS
CATGTAGAAGTGGATGAGAG+GGG 0.587323 4_2:+39824447 Msa0599690:CDS
GCCAACATATATAGGTGACA+TGG 0.588457 4_2:+39824418 Msa0599690:intron
TATGTTAGGTCGTTTCCTCG+TGG 0.589599 4_2:+39823062 Msa0599690:CDS
AATACGTCAATATCACTTGG+AGG 0.592070 4_2:-39827027 None:intergenic
GATGGAAATGGAAATGGAGT+CGG 0.592474 4_2:+39825649 Msa0599690:CDS
CTTATTGGGATGGCACAGAT+GGG 0.593281 4_2:+39822978 Msa0599690:CDS
CTTCGTCTAGATGTAGAAGA+AGG 0.594581 4_2:+39823792 Msa0599690:CDS
GGATTTGCTATCCTGCCTGA+TGG 0.594655 4_2:+39825631 Msa0599690:CDS
CATTTAGAACCAATGGTCAA+CGG 0.597017 4_2:+39823400 Msa0599690:intron
GTGCTTCAACAGCACACACA+TGG 0.598437 4_2:+39824853 Msa0599690:CDS
ACGAGTCGGCACAAGAGGTG+AGG 0.599970 4_2:-39823681 None:intergenic
ATTGTAAACAACATCCTGAC+GGG 0.600101 4_2:+39823723 Msa0599690:CDS
CCCAGATGACAAGCAAAGGA+AGG 0.600252 4_2:+39821731 Msa0599690:CDS
GATGCCAAATGGTTACTCAA+AGG 0.601554 4_2:+39823838 Msa0599690:CDS
CTGAAAAGCGACGGTCAGAA+GGG 0.602407 4_2:-39825713 None:intergenic
TGTTTCAAGAGCTGTGACTG+TGG 0.603466 4_2:+39823436 Msa0599690:CDS
AGGCTTAATTTACAAGAATG+GGG 0.603574 4_2:+39826667 Msa0599690:three_prime_UTR
TGAAAGGCTTGCTAGCTCCA+TGG 0.610773 4_2:+39824554 Msa0599690:CDS
TATGGAAGAGCTTATTGGGA+TGG 0.613912 4_2:+39822968 Msa0599690:CDS
AACCAATATCTGAAAAGCGA+CGG 0.616052 4_2:-39825722 None:intergenic
AAATGCAAGGCTAAGAGAAG+AGG 0.619130 4_2:+39822083 Msa0599690:CDS
CCAACATATATAGGTGACAT+GGG 0.619612 4_2:+39824419 Msa0599690:intron
AAACCAATTTCTGGACGCGG+TGG 0.619643 4_2:-39822728 None:intergenic
TGATCCAAGAGAGAGTTTAG+CGG 0.620008 4_2:-39825758 None:intergenic
CACACCCAGATGACAAGCAA+AGG 0.622325 4_2:+39821727 Msa0599690:CDS
GTCGGCGGTGAAACTGGCGG+AGG 0.626051 4_2:+39825667 Msa0599690:CDS
GCTGCTTCTGGTGAAGAACA+AGG 0.627125 4_2:+39821481 Msa0599690:CDS
TCTTGAATTAAGCAACCAGA+AGG 0.628017 4_2:-39823815 None:intergenic
CGAGTCGGCACAAGAGGTGA+GGG 0.629753 4_2:-39823680 None:intergenic
CGTCATCACTCTCACATCAT+CGG 0.631515 4_2:-39824898 None:intergenic
TCCTGCAGTGAAAACCATGA+AGG 0.632264 4_2:+39821454 Msa0599690:CDS
TTCGGGAATTGACTTCCCCT+AGG 0.632649 4_2:+39826743 Msa0599690:three_prime_UTR
AACCAATTTCTGGACGCGGT+GGG 0.632731 4_2:-39822727 None:intergenic
ATTCCGACCGTAGATGTTGG+CGG 0.634409 4_2:+39824585 Msa0599690:CDS
ATGGGTTGAACATGTAGAAG+TGG 0.635474 4_2:+39824437 Msa0599690:CDS
ATGAATGTAGTTCTAAATGG+AGG 0.639925 4_2:+39825577 Msa0599690:CDS
CTACAATGGTGCATTACAAG+TGG 0.640429 4_2:+39823487 Msa0599690:CDS
TATTGTAAACAACATCCTGA+CGG 0.640849 4_2:+39823722 Msa0599690:CDS
TGTTGTCAACTGGAGTGGCA+GGG 0.641410 4_2:+39823462 Msa0599690:CDS
GGAGTCGGCGGTGAAACTGG+CGG 0.641968 4_2:+39825664 Msa0599690:CDS
GCTTCATGTCCTAATTGTGG+TGG 0.643891 4_2:+39822009 Msa0599690:CDS
GGATCTGGTGCTGAGTGTGG+CGG 0.645442 4_2:-39821531 None:intergenic
ACAAAGTAACTCTCACGAGT+CGG 0.646006 4_2:-39823695 None:intergenic
AGCTTAGAGCTGATAACATG+AGG 0.647699 4_2:+39821965 Msa0599690:CDS
ACGATGGCAGCGAAGTACGT+AGG 0.649514 4_2:+39822665 Msa0599690:CDS
GCAGCACTAAGAACAATACC+AGG 0.650728 4_2:-39824951 None:intergenic
GTGAGAAAGAGTAGCAACGT+TGG 0.653963 4_2:+39820405 Msa0599690:five_prime_UTR
GGTGTAGTACTTAACCAAAG+AGG 0.657817 4_2:-39823005 None:intergenic
AATGCTTCATGTCCTAATTG+TGG 0.661151 4_2:+39822006 Msa0599690:CDS
TGATAACAAACCAAGAAGGG+AGG 0.664902 4_2:+39824775 Msa0599690:CDS
GGAACTGACCAGCTTCCAAG+AGG 0.667277 4_2:-39821348 None:intergenic
GATTGATAGAATTTCAACGA+TGG 0.671483 4_2:+39822649 Msa0599690:intron
GGAAGTGTTGTCAACTGGAG+TGG 0.673358 4_2:+39823457 Msa0599690:CDS
GGAGTGGCAGGGAACTACAA+TGG 0.679417 4_2:+39823473 Msa0599690:CDS
CATCCATGAGAATCTCAACA+AGG 0.687534 4_2:-39823160 None:intergenic
ATACCGCCAACATCTACGGT+CGG 0.690999 4_2:-39824588 None:intergenic
TAATGAGAACTCCAGAACTG+AGG 0.692979 4_2:+39825025 Msa0599690:CDS
GGAAATGGAAATGGAGTCGG+CGG 0.694782 4_2:+39825652 Msa0599690:CDS
TGCAGTGAAAACCATGAAGG+TGG 0.700352 4_2:+39821457 Msa0599690:CDS
TCAACATTTAATATACCTAG+GGG 0.717489 4_2:-39826758 None:intergenic
CTTCTTCTACATCTAGACGA+AGG 0.725595 4_2:-39823791 None:intergenic
GAAGTACGTAGGAAAGCCAG+TGG 0.728972 4_2:+39822676 Msa0599690:CDS
GGTTTAGGTCCAATCCCACG+AGG 0.756148 4_2:-39823077 None:intergenic
GCACTAAGAACAATACCAGG+AGG 0.759585 4_2:-39824948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTATATTTTTA+TGG + chr4_2:39819924-39819943 Msa0599690:intron 0.0%
!!! ATTTTTTTTTATATTTTTAT+GGG + chr4_2:39819925-39819944 Msa0599690:intron 0.0%
!! AAATAATTTATAATATTATA+TGG - chr4_2:39821240-39821259 None:intergenic 0.0%
!! TAACATATTTACTTAAAAAT+AGG + chr4_2:39820059-39820078 Msa0599690:intron 10.0%
!!! TTTTTATTTATGTTGTAATA+AGG - chr4_2:39821084-39821103 None:intergenic 10.0%
!! AAAAATAATGTAAAAGAAAT+GGG - chr4_2:39824628-39824647 None:intergenic 10.0%
!! TAAAAATAATGTAAAAGAAA+TGG - chr4_2:39824629-39824648 None:intergenic 10.0%
!!! TTGATATATCATAAATTTTA+AGG - chr4_2:39824734-39824753 None:intergenic 10.0%
!! TCAAATAGAAAATATAATAA+CGG - chr4_2:39825402-39825421 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAAGAC+TGG - chr4_2:39826847-39826866 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTTTTG+AGG + chr4_2:39826849-39826868 Msa0599690:three_prime_UTR 10.0%
!!! ATTATTTTGTTCTGTAAAAA+AGG + chr4_2:39820142-39820161 Msa0599690:intron 15.0%
!! AGAAAGAAAATATATTGTTT+AGG - chr4_2:39820183-39820202 None:intergenic 15.0%
!!! TATGTATTTATTTTTCTTCT+AGG + chr4_2:39820266-39820285 Msa0599690:intron 15.0%
!! TTCAGTCAAAAATAAATAAA+GGG - chr4_2:39820576-39820595 None:intergenic 15.0%
!! TTTCAGTCAAAAATAAATAA+AGG - chr4_2:39820577-39820596 None:intergenic 15.0%
!! AGAGAAAAATTAAAAAAAGT+TGG + chr4_2:39821193-39821212 Msa0599690:intron 15.0%
!! ATTATAGTAATCAAGATATT+TGG + chr4_2:39824285-39824304 Msa0599690:intron 15.0%
!!! AAATTTGAGATAAATCATTA+TGG + chr4_2:39825948-39825967 Msa0599690:intron 15.0%
!!! TGGTTTTTTGTTTTTTTCTA+GGG + chr4_2:39819993-39820012 Msa0599690:intron 20.0%
!! CATTCATAGAGAAATATATA+TGG + chr4_2:39820211-39820230 Msa0599690:intron 20.0%
!! TCAGTCAAAAATAAATAAAG+GGG - chr4_2:39820575-39820594 None:intergenic 20.0%
!!! TTATTTTAATTGCAAAGTCA+AGG + chr4_2:39820702-39820721 Msa0599690:intron 20.0%
!!! TATTTTAATTGCAAAGTCAA+GGG + chr4_2:39820703-39820722 Msa0599690:intron 20.0%
!!! TTTTTCTTTTTCCTCTTTTA+TGG - chr4_2:39820848-39820867 None:intergenic 20.0%
!! ATATTATATGGTAAACAAAC+TGG - chr4_2:39821228-39821247 None:intergenic 20.0%
!! GAGAAAATACTAGTATAATA+TGG + chr4_2:39821625-39821644 Msa0599690:intron 20.0%
!!! ATAATAAAATGAGAGTACAA+AGG + chr4_2:39822187-39822206 Msa0599690:intron 20.0%
!!! TGATTTTAAGCTACTTTTAT+AGG - chr4_2:39822226-39822245 None:intergenic 20.0%
!! GCTTCTCTTTATAAATTTAA+TGG + chr4_2:39822466-39822485 Msa0599690:intron 20.0%
!! CTCTTTATAAATTTAATGGT+CGG + chr4_2:39822470-39822489 Msa0599690:intron 20.0%
!! AGAAAATGGAAAATAAGAAA+GGG - chr4_2:39822561-39822580 None:intergenic 20.0%
!! AAGAAAATGGAAAATAAGAA+AGG - chr4_2:39822562-39822581 None:intergenic 20.0%
!!! TTTCCATTTTCTTTGTATAA+TGG + chr4_2:39822569-39822588 Msa0599690:intron 20.0%
!! TTAATGAAGATGAATATGTT+AGG + chr4_2:39823048-39823067 Msa0599690:CDS 20.0%
!!! ATATCATGTCATTTATATTG+CGG + chr4_2:39823264-39823283 Msa0599690:intron 20.0%
!! CAATTACAGTTGTAATATAA+AGG - chr4_2:39823319-39823338 None:intergenic 20.0%
!! AAAATTAATGAGAAGAAACA+TGG + chr4_2:39823615-39823634 Msa0599690:intron 20.0%
!!! TTTAACCTTTTAAATAACAG+TGG + chr4_2:39825107-39825126 Msa0599690:intron 20.0%
!!! TTAACCTTTTAAATAACAGT+GGG + chr4_2:39825108-39825127 Msa0599690:intron 20.0%
!! TTTAAATTACTGATGTAGTT+AGG + chr4_2:39825249-39825268 Msa0599690:intron 20.0%
!!! AACTGGAAAATTTTCAATAT+AGG - chr4_2:39825913-39825932 None:intergenic 20.0%
!! TTTCACTAAAAATAACTAAC+TGG - chr4_2:39825930-39825949 None:intergenic 20.0%
!!! ACTTTTATAATCGAGTTATA+GGG + chr4_2:39826353-39826372 Msa0599690:intron 20.0%
!!! TTCTAAGAGGATTAATTATA+AGG + chr4_2:39826720-39826739 Msa0599690:three_prime_UTR 20.0%
!! ATAATGAGAAATTAAAGCAA+TGG - chr4_2:39826964-39826983 None:intergenic 20.0%
! ATGGGAATAAAAAAAGTGAA+AGG - chr4_2:39819689-39819708 None:intergenic 25.0%
! CTTCTTTAATCATTCATTTC+TGG + chr4_2:39819787-39819806 Msa0599690:five_prime_UTR 25.0%
! TGGAAAATAAACTTATCACA+AGG - chr4_2:39819972-39819991 None:intergenic 25.0%
! AGAAAAAAACAAAAAACCAC+TGG - chr4_2:39819992-39820011 None:intergenic 25.0%
!!! GTGGTTTTTTGTTTTTTTCT+AGG + chr4_2:39819992-39820011 Msa0599690:intron 25.0%
!!! TTTTTGTTTTTTTCTAGGGT+TGG + chr4_2:39819997-39820016 Msa0599690:intron 25.0%
! TAGAAAAAGACTTGAAGAAA+AGG - chr4_2:39820508-39820527 None:intergenic 25.0%
!! AATAAAGGGGAATTTAAGAT+GGG - chr4_2:39820562-39820581 None:intergenic 25.0%
! AAATAAAGGGGAATTTAAGA+TGG - chr4_2:39820563-39820582 None:intergenic 25.0%
! TTCTATTTATTGTTCCAATG+AGG + chr4_2:39820750-39820769 Msa0599690:intron 25.0%
!! GTTATCTTTTTCCATAAAAG+AGG + chr4_2:39820834-39820853 Msa0599690:intron 25.0%
! CAGAAATTTATTTACAAAGC+TGG - chr4_2:39820895-39820914 None:intergenic 25.0%
! ATCAAAAAATGTTACTGTCA+TGG - chr4_2:39820933-39820952 None:intergenic 25.0%
!!! AATAAGGCTACTTTTTTTAG+AGG - chr4_2:39821068-39821087 None:intergenic 25.0%
! TAGTTTGAAAAACTACAACA+AGG + chr4_2:39821266-39821285 Msa0599690:intron 25.0%
!! AAAAACTTGATGGTAACATA+GGG - chr4_2:39821584-39821603 None:intergenic 25.0%
!! AAAAAACTTGATGGTAACAT+AGG - chr4_2:39821585-39821604 None:intergenic 25.0%
! ATGAAGGAAAAAAAACTTGA+TGG - chr4_2:39821594-39821613 None:intergenic 25.0%
!!! AGTTTTGGTTTCAAAACAAA+AGG + chr4_2:39821793-39821812 Msa0599690:CDS 25.0%
! ACAAGAAAAGATAGAGAAAA+TGG - chr4_2:39822147-39822166 None:intergenic 25.0%
! TTATTTAACCCTAAGTCTTT+AGG - chr4_2:39822275-39822294 None:intergenic 25.0%
! TCTAAAAGTAATGGTTGTTA+TGG - chr4_2:39822438-39822457 None:intergenic 25.0%
! GTTCCATTATACAAAGAAAA+TGG - chr4_2:39822575-39822594 None:intergenic 25.0%
!!! ATATTCTAAGGTCAATTAGT+GGG + chr4_2:39822798-39822817 Msa0599690:intron 25.0%
! ATGCACACTTAAATTCATAA+GGG - chr4_2:39823246-39823265 None:intergenic 25.0%
! TATGCACACTTAAATTCATA+AGG - chr4_2:39823247-39823266 None:intergenic 25.0%
! TTTATATTGCGGCAAAATTA+TGG + chr4_2:39823275-39823294 Msa0599690:intron 25.0%
!! CATACTGCAATTTAAAATCA+TGG + chr4_2:39823347-39823366 Msa0599690:intron 25.0%
! TTAAAACGAGGTTAAATACA+CGG - chr4_2:39823577-39823596 None:intergenic 25.0%
! CTATTTAACGTATTAAAACG+AGG - chr4_2:39823589-39823608 None:intergenic 25.0%
!! TTTAAAATGTAACCTTCGTT+TGG + chr4_2:39823932-39823951 Msa0599690:intron 25.0%
! CATAAATACCACTATTATGT+CGG - chr4_2:39824163-39824182 None:intergenic 25.0%
! TATCTAAGTGATAAGATGAT+TGG - chr4_2:39824239-39824258 None:intergenic 25.0%
! TAATGTTTGCCAACATATAT+AGG + chr4_2:39824410-39824429 Msa0599690:intron 25.0%
! ATATATCAAGTGTTATCATG+TGG + chr4_2:39824745-39824764 Msa0599690:intron 25.0%
! AGAAATTCAAAAACTTGTGT+TGG - chr4_2:39825002-39825021 None:intergenic 25.0%
!!! TGAGGTAATGTTTTTTACAT+AGG + chr4_2:39825043-39825062 Msa0599690:intron 25.0%
!! ATATCCCACTGTTATTTAAA+AGG - chr4_2:39825115-39825134 None:intergenic 25.0%
!! TTTGACAATCTGAAACTTAT+CGG + chr4_2:39825417-39825436 Msa0599690:intron 25.0%
!!! AAGACTAATAATGGATTTTG+AGG + chr4_2:39825865-39825884 Msa0599690:three_prime_UTR 25.0%
! AGAAACATATGTTAGATACA+TGG + chr4_2:39826012-39826031 Msa0599690:intron 25.0%
!! CTTTTATATTGCACTAAATG+CGG + chr4_2:39826077-39826096 Msa0599690:intron 25.0%
! AAAAACACATACATCTAACA+TGG - chr4_2:39826145-39826164 None:intergenic 25.0%
! GTAGTACTTCTTAAATATCA+AGG - chr4_2:39826173-39826192 None:intergenic 25.0%
!! AGCATTAGTAATTCAACTTT+TGG + chr4_2:39826224-39826243 Msa0599690:intron 25.0%
! TATACTTTCCTCAAATCATT+TGG + chr4_2:39826287-39826306 Msa0599690:intron 25.0%
!! GACTTTTATAATCGAGTTAT+AGG + chr4_2:39826352-39826371 Msa0599690:intron 25.0%
!! CTTTTATAATCGAGTTATAG+GGG + chr4_2:39826354-39826373 Msa0599690:intron 25.0%
! TTAGGCTTAATTTACAAGAA+TGG + chr4_2:39826665-39826684 Msa0599690:three_prime_UTR 25.0%
! TAGGCTTAATTTACAAGAAT+GGG + chr4_2:39826666-39826685 Msa0599690:three_prime_UTR 25.0%
! AGAGGATTAATTATAAGGTT+CGG + chr4_2:39826725-39826744 Msa0599690:three_prime_UTR 25.0%
! TCAACATTTAATATACCTAG+GGG - chr4_2:39826761-39826780 None:intergenic 25.0%
! GTCAACATTTAATATACCTA+GGG - chr4_2:39826762-39826781 None:intergenic 25.0%
!! TACCCTATCAAAATTTCTTT+TGG + chr4_2:39826800-39826819 Msa0599690:three_prime_UTR 25.0%
!!! GTCCAAAAGAAATTTTGATA+GGG - chr4_2:39826805-39826824 None:intergenic 25.0%
!!! AGTCCAAAAGAAATTTTGAT+AGG - chr4_2:39826806-39826825 None:intergenic 25.0%
!! TCTTTTGGACTAATTAGATA+TGG + chr4_2:39826815-39826834 Msa0599690:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAGGGAAGTT+AGG + chr4_2:39826858-39826877 Msa0599690:three_prime_UTR 25.0%
! CATTTAATTGTTACTATGTG+AGG + chr4_2:39826921-39826940 Msa0599690:three_prime_UTR 25.0%
!! TTATAACTCTTTTCTCCTTT+AGG + chr4_2:39826980-39826999 Msa0599690:intron 25.0%
! TATCCATTTCAAAATCCTAA+AGG - chr4_2:39826998-39827017 None:intergenic 25.0%
GAAAGGTTAGAAGAAAGAAA+CGG - chr4_2:39819672-39819691 None:intergenic 30.0%
!!! GGTTTTGAGAAGGTTAAAAT+GGG - chr4_2:39819707-39819726 None:intergenic 30.0%
!!! TGGTTTTGAGAAGGTTAAAA+TGG - chr4_2:39819708-39819727 None:intergenic 30.0%
!! ATTTTAACCTTCTCAAAACC+AGG + chr4_2:39819707-39819726 Msa0599690:five_prime_UTR 30.0%
ATGTAGTATCATAACTCAGA+AGG + chr4_2:39819841-39819860 Msa0599690:intron 30.0%
!! GTGATAAGTTTATTTTCCAG+TGG + chr4_2:39819973-39819992 Msa0599690:intron 30.0%
TGAATGAGAAAGAAAACGTT+AGG + chr4_2:39820021-39820040 Msa0599690:intron 30.0%
TTTGATTCTAACTCTTTGAC+AGG + chr4_2:39820449-39820468 Msa0599690:five_prime_UTR 30.0%
GGATGAAGAATTGAAGAAAA+GGG - chr4_2:39820540-39820559 None:intergenic 30.0%
! ATAAAGGGGAATTTAAGATG+GGG - chr4_2:39820561-39820580 None:intergenic 30.0%
! TCTAATCTCATTTTCTCTCT+GGG + chr4_2:39820650-39820669 Msa0599690:intron 30.0%
AGAAGGATATTAAACCTCAT+TGG - chr4_2:39820767-39820786 None:intergenic 30.0%
ATATTGCAGAAAATTGTGAG+TGG - chr4_2:39820974-39820993 None:intergenic 30.0%
! TTTAGAGGAATTAGAGTACT+TGG - chr4_2:39821053-39821072 None:intergenic 30.0%
ATTCTTACGATTCCATTTCT+TGG - chr4_2:39821555-39821574 None:intergenic 30.0%
TTCTCTCAAAGAAAAGATGA+AGG - chr4_2:39821610-39821629 None:intergenic 30.0%
! TATTTGTTGCAGTTTCTTCA+AGG + chr4_2:39821698-39821717 Msa0599690:intron 30.0%
!!! GTTTTGTTTTGCTGTGTTTT+TGG + chr4_2:39821867-39821886 Msa0599690:intron 30.0%
!!! TTTTGCTGTGTTTTTGGTAA+AGG + chr4_2:39821873-39821892 Msa0599690:intron 30.0%
CATTTGATGAACATCATTTG+AGG + chr4_2:39822055-39822074 Msa0599690:CDS 30.0%
!!! TAAGTCTTTAGGTTTTGTTG+TGG - chr4_2:39822264-39822283 None:intergenic 30.0%
ACAACAAAACCTAAAGACTT+AGG + chr4_2:39822263-39822282 Msa0599690:intron 30.0%
CAACAAAACCTAAAGACTTA+GGG + chr4_2:39822264-39822283 Msa0599690:intron 30.0%
! CTTTCTCTCTCTAAAAGTAA+TGG - chr4_2:39822447-39822466 None:intergenic 30.0%
AATGGAAAATAAGAAAGGGT+TGG - chr4_2:39822557-39822576 None:intergenic 30.0%
GATTGATAGAATTTCAACGA+TGG + chr4_2:39822649-39822668 Msa0599690:intron 30.0%
ATGTTTGAATAGTTTACCAC+TGG - chr4_2:39822695-39822714 None:intergenic 30.0%
!!! AAATTGGTTTTGGCAATCAA+GGG + chr4_2:39822741-39822760 Msa0599690:CDS 30.0%
!! GATATTCTAAGGTCAATTAG+TGG + chr4_2:39822797-39822816 Msa0599690:intron 30.0%
!! TATTATTGGTTTGTCTGCTT+CGG - chr4_2:39822828-39822847 None:intergenic 30.0%
! CATTTGAAACCATTAGGTTT+AGG - chr4_2:39823095-39823114 None:intergenic 30.0%
!! TTTTTGCCATTTAGAACCAA+TGG + chr4_2:39823393-39823412 Msa0599690:intron 30.0%
TATTGTAAACAACATCCTGA+CGG + chr4_2:39823722-39823741 Msa0599690:CDS 30.0%
TTAATTCAAGAGATGCCAAA+TGG + chr4_2:39823827-39823846 Msa0599690:CDS 30.0%
AATACCTTTGAGTAACCATT+TGG - chr4_2:39823845-39823864 None:intergenic 30.0%
!!! TACATTTTAAAGCGATGATG+TGG - chr4_2:39823923-39823942 None:intergenic 30.0%
TTTGCAAACTTGCATTTGAA+TGG - chr4_2:39824048-39824067 None:intergenic 30.0%
GCAAGTTTGCAAAGTAAAAA+TGG + chr4_2:39824055-39824074 Msa0599690:intron 30.0%
! ACAATCTTAGTGATGATGTT+TGG - chr4_2:39824083-39824102 None:intergenic 30.0%
! TCAACCACAATTTAGAACTA+CGG + chr4_2:39824212-39824231 Msa0599690:intron 30.0%
ACAATCTGCTTGTATAGATT+AGG - chr4_2:39824477-39824496 None:intergenic 30.0%
TTAGTGATAACAAACCAAGA+AGG + chr4_2:39824771-39824790 Msa0599690:intron 30.0%
TAGTGATAACAAACCAAGAA+GGG + chr4_2:39824772-39824791 Msa0599690:intron 30.0%
! AGAATGGTGATAAGTTTTTG+TGG + chr4_2:39824822-39824841 Msa0599690:CDS 30.0%
AATTCAAAAACTTGTGTTGG+TGG - chr4_2:39824999-39825018 None:intergenic 30.0%
AAAAAACATTACCTCAGTTC+TGG - chr4_2:39825039-39825058 None:intergenic 30.0%
! ATCGACTTACATTTACTCTA+AGG - chr4_2:39825213-39825232 None:intergenic 30.0%
AATGCAATGTAAAGATCTTG+AGG - chr4_2:39825348-39825367 None:intergenic 30.0%
TTCATAGCAACTATATCTAC+CGG - chr4_2:39825562-39825581 None:intergenic 30.0%
!! GCTATGAATGTAGTTCTAAA+TGG + chr4_2:39825574-39825593 Msa0599690:CDS 30.0%
!! ATGAATGTAGTTCTAAATGG+AGG + chr4_2:39825577-39825596 Msa0599690:CDS 30.0%
TTGAGCTTCAAGACTAATAA+TGG + chr4_2:39825856-39825875 Msa0599690:three_prime_UTR 30.0%
! CATCAAATCATTTCGAGTAT+AGG + chr4_2:39826196-39826215 Msa0599690:intron 30.0%
! TCCTTTTATAGTCGAGTTAT+AGG + chr4_2:39826253-39826272 Msa0599690:intron 30.0%
! CCTTTTATAGTCGAGTTATA+GGG + chr4_2:39826254-39826273 Msa0599690:intron 30.0%
! CTCAAATCATTTGGAGTATA+GGG + chr4_2:39826296-39826315 Msa0599690:intron 30.0%
! AAAACAGGAGTACAAAAGAT+AGG - chr4_2:39826412-39826431 None:intergenic 30.0%
CAATTCTATTGCAGTTTACA+AGG + chr4_2:39826587-39826606 Msa0599690:intron 30.0%
CTAATGGGGAAAAAATCAAA+AGG + chr4_2:39826627-39826646 Msa0599690:three_prime_UTR 30.0%
AGGCTTAATTTACAAGAATG+GGG + chr4_2:39826667-39826686 Msa0599690:three_prime_UTR 30.0%
GAGGATTAATTATAAGGTTC+GGG + chr4_2:39826726-39826745 Msa0599690:three_prime_UTR 30.0%
GGTCAACATTTAATATACCT+AGG - chr4_2:39826763-39826782 None:intergenic 30.0%
!! GAAATTTTGATAGGGTAGTA+AGG - chr4_2:39826797-39826816 None:intergenic 30.0%
TGGACTAATTAGATATGGTT+AGG + chr4_2:39826820-39826839 Msa0599690:three_prime_UTR 30.0%
ATACTTCAAAACTAAAGCCT+AGG - chr4_2:39826901-39826920 None:intergenic 30.0%
!!! TCTCCTTTAGGATTTTGAAA+TGG + chr4_2:39826992-39827011 Msa0599690:intron 30.0%
CAAAATACGTCAATATCACT+TGG - chr4_2:39827033-39827052 None:intergenic 30.0%
TGAAAAAAGAAGAGAGATCC+TGG - chr4_2:39819728-39819747 None:intergenic 35.0%
TTGCAAAATGAGACTAAGCT+AGG + chr4_2:39819888-39819907 Msa0599690:intron 35.0%
TGCAAAATGAGACTAAGCTA+GGG + chr4_2:39819889-39819908 Msa0599690:intron 35.0%
AGCTTAATCCTCAACTGAAA+AGG + chr4_2:39820326-39820345 Msa0599690:five_prime_UTR 35.0%
GCTTAATCCTCAACTGAAAA+GGG + chr4_2:39820327-39820346 Msa0599690:five_prime_UTR 35.0%
ATTCTAACTCTTTGACAGGT+TGG + chr4_2:39820453-39820472 Msa0599690:five_prime_UTR 35.0%
GGGATGAAGAATTGAAGAAA+AGG - chr4_2:39820541-39820560 None:intergenic 35.0%
GAGAAAATGAGATTAGAGAG+TGG - chr4_2:39820647-39820666 None:intergenic 35.0%
! CTCTAATCTCATTTTCTCTC+TGG + chr4_2:39820649-39820668 Msa0599690:intron 35.0%
!! GTGTATTTAGAGTATCGAGA+AGG - chr4_2:39820784-39820803 None:intergenic 35.0%
TGAAAAACTACAACAAGGCT+TGG + chr4_2:39821271-39821290 Msa0599690:five_prime_UTR 35.0%
GAAAAACTACAACAAGGCTT+GGG + chr4_2:39821272-39821291 Msa0599690:five_prime_UTR 35.0%
AATGTTTCAGTCAAACCTCT+TGG + chr4_2:39821333-39821352 Msa0599690:exon 35.0%
TTTGCATCATCTCTAATGGA+TGG - chr4_2:39821372-39821391 None:intergenic 35.0%
! GTGTTTTGCATCATCTCTAA+TGG - chr4_2:39821376-39821395 None:intergenic 35.0%
!! CGGTGATAACGTTTTCTTTT+GGG - chr4_2:39821514-39821533 None:intergenic 35.0%
!! AACCAAAACTTGACTTGCAA+AGG - chr4_2:39821783-39821802 None:intergenic 35.0%
AAACAAAAGGACTCAGATGA+AGG + chr4_2:39821806-39821825 Msa0599690:CDS 35.0%
!!! TGTGTTTTTGGTAAAGGAGT+TGG + chr4_2:39821879-39821898 Msa0599690:intron 35.0%
AGCTGATAACATGAGGTATA+GGG + chr4_2:39821972-39821991 Msa0599690:CDS 35.0%
AATGCTTCATGTCCTAATTG+TGG + chr4_2:39822006-39822025 Msa0599690:CDS 35.0%
! ATTTGAGGCTTGAAAATGCA+AGG + chr4_2:39822070-39822089 Msa0599690:CDS 35.0%
! GCAGTTTCTTTAGAAGGATA+TGG - chr4_2:39822350-39822369 None:intergenic 35.0%
ATGAGTGCAGTTTCTTTAGA+AGG - chr4_2:39822356-39822375 None:intergenic 35.0%
CATAGAACTCAGATACTCTA+CGG + chr4_2:39822395-39822414 Msa0599690:intron 35.0%
!! AAAGGGTTGGTATTCATTTG+TGG - chr4_2:39822544-39822563 None:intergenic 35.0%
TGATTGCCAAAACCAATTTC+TGG - chr4_2:39822740-39822759 None:intergenic 35.0%
!!! GAAATTGGTTTTGGCAATCA+AGG + chr4_2:39822740-39822759 Msa0599690:CDS 35.0%
ATTGGTACTATGGACATGTA+TGG + chr4_2:39822764-39822783 Msa0599690:intron 35.0%
! AGGGTGAACAAAGTACTATA+TGG - chr4_2:39823227-39823246 None:intergenic 35.0%
! CATTTAGAACCAATGGTCAA+CGG + chr4_2:39823400-39823419 Msa0599690:intron 35.0%
! ATTTCCGTCGCTAATTTTGT+TGG + chr4_2:39823545-39823564 Msa0599690:intron 35.0%
AGAACCAACAAAATTAGCGA+CGG - chr4_2:39823552-39823571 None:intergenic 35.0%
ATTGTAAACAACATCCTGAC+GGG + chr4_2:39823723-39823742 Msa0599690:CDS 35.0%
TCTTGAATTAAGCAACCAGA+AGG - chr4_2:39823818-39823837 None:intergenic 35.0%
CTTATGTTGCGAACATATTG+CGG + chr4_2:39824122-39824141 Msa0599690:intron 35.0%
TGAGTTATCCGACATAATAG+TGG + chr4_2:39824152-39824171 Msa0599690:intron 35.0%
CCAACATATATAGGTGACAT+GGG + chr4_2:39824419-39824438 Msa0599690:intron 35.0%
CTTTAGATCGACAATGTGAA+AGG + chr4_2:39824538-39824557 Msa0599690:CDS 35.0%
! ATGGTGATAAGTTTTTGTGG+TGG + chr4_2:39824825-39824844 Msa0599690:CDS 35.0%
!! TTAGTGCTGCTACTTCTTTT+TGG + chr4_2:39824964-39824983 Msa0599690:CDS 35.0%
CAGTGGGATATTCTTTCTAA+TGG + chr4_2:39825124-39825143 Msa0599690:intron 35.0%
TGGGATATTCTTTCTAATGG+TGG + chr4_2:39825127-39825146 Msa0599690:CDS 35.0%
TAGAAAAATGCAAGAGAGTG+CGG + chr4_2:39825290-39825309 Msa0599690:intron 35.0%
GTAGTATTAACATGTTGCTC+TGG - chr4_2:39825495-39825514 None:intergenic 35.0%
!! CTCATTTGTTATCTATGCAC+CGG + chr4_2:39825540-39825559 Msa0599690:CDS 35.0%
AACCAATATCTGAAAAGCGA+CGG - chr4_2:39825725-39825744 None:intergenic 35.0%
CCCTATAACTCGACTATAAA+AGG - chr4_2:39826257-39826276 None:intergenic 35.0%
CCTATACTCCAAATGATTTG+AGG - chr4_2:39826298-39826317 None:intergenic 35.0%
! CCTCAAATCATTTGGAGTAT+AGG + chr4_2:39826295-39826314 Msa0599690:intron 35.0%
GTTAGTGTTTCGTCTATTGA+CGG + chr4_2:39826384-39826403 Msa0599690:intron 35.0%
AGAACACAAGAATGCAAAAC+AGG - chr4_2:39826427-39826446 None:intergenic 35.0%
ATGGGGAAAAAATCAAAAGG+TGG + chr4_2:39826630-39826649 Msa0599690:three_prime_UTR 35.0%
GAAAAAATCAAAAGGTGGTG+AGG + chr4_2:39826635-39826654 Msa0599690:three_prime_UTR 35.0%
! CTTGCAAGATCTTTTCTAAG+AGG + chr4_2:39826707-39826726 Msa0599690:three_prime_UTR 35.0%
TTAAAGCAATGGTGTGTCTT+AGG - chr4_2:39826953-39826972 None:intergenic 35.0%
AATACGTCAATATCACTTGG+AGG - chr4_2:39827030-39827049 None:intergenic 35.0%
AAGGAAGAAAGAGAGAGAGT+GGG - chr4_2:39819623-39819642 None:intergenic 40.0%
!! TTAGAGAGAGAGAGCATTGA+AGG - chr4_2:39819642-39819661 None:intergenic 40.0%
! TTTTGCTCCCTTTTCAGTTG+AGG - chr4_2:39820337-39820356 None:intergenic 40.0%
TTCTTGCGTATAACCTGCAA+GGG - chr4_2:39820360-39820379 None:intergenic 40.0%
TTTCTTGCGTATAACCTGCA+AGG - chr4_2:39820361-39820380 None:intergenic 40.0%
!! TAACTCTTTGACAGGTTGGT+AGG + chr4_2:39820457-39820476 Msa0599690:five_prime_UTR 40.0%
! ATGGTTTTCACTGCAGGATT+TGG - chr4_2:39821452-39821471 None:intergenic 40.0%
!!! TAACGTTTTCTTTTGGGACG+TGG - chr4_2:39821508-39821527 None:intergenic 40.0%
!! GCGGTGATAACGTTTTCTTT+TGG - chr4_2:39821515-39821534 None:intergenic 40.0%
ACGATTCCATTTCTTGGATC+TGG - chr4_2:39821549-39821568 None:intergenic 40.0%
AAGGAGTTAAGCAGAGAGTT+AGG + chr4_2:39821750-39821769 Msa0599690:CDS 40.0%
AGGAGTTAAGCAGAGAGTTA+GGG + chr4_2:39821751-39821770 Msa0599690:CDS 40.0%
! AGCCTTTGCAAGTCAAGTTT+TGG + chr4_2:39821778-39821797 Msa0599690:CDS 40.0%
AGCTTAGAGCTGATAACATG+AGG + chr4_2:39821965-39821984 Msa0599690:CDS 40.0%
GAGCTGATAACATGAGGTAT+AGG + chr4_2:39821971-39821990 Msa0599690:CDS 40.0%
GACATTTCACCTATAGCTGT+TGG - chr4_2:39822036-39822055 None:intergenic 40.0%
AAATGCAAGGCTAAGAGAAG+AGG + chr4_2:39822083-39822102 Msa0599690:CDS 40.0%
! CAATCAAGGGATTGGTACTA+TGG + chr4_2:39822754-39822773 Msa0599690:intron 40.0%
TGACCTTAGAATATCTCCAC+TGG - chr4_2:39822792-39822811 None:intergenic 40.0%
CAGCTATGGAAGAGCTTATT+GGG + chr4_2:39822964-39822983 Msa0599690:CDS 40.0%
TATGGAAGAGCTTATTGGGA+TGG + chr4_2:39822968-39822987 Msa0599690:CDS 40.0%
GGTGTAGTACTTAACCAAAG+AGG - chr4_2:39823008-39823027 None:intergenic 40.0%
TGGTTAAGTACTACACCTGA+TGG + chr4_2:39823011-39823030 Msa0599690:CDS 40.0%
! GCTTCGCATTTGAAACCATT+AGG - chr4_2:39823101-39823120 None:intergenic 40.0%
TTTCAAATGCGAAGCTTCGA+GGG + chr4_2:39823106-39823125 Msa0599690:CDS 40.0%
CAACCTTGTTGAGATTCTCA+TGG + chr4_2:39823157-39823176 Msa0599690:CDS 40.0%
CATCCATGAGAATCTCAACA+AGG - chr4_2:39823163-39823182 None:intergenic 40.0%
TGTTGAGATTCTCATGGATG+TGG + chr4_2:39823163-39823182 Msa0599690:CDS 40.0%
!! CGTTGACCATTGGTTCTAAA+TGG - chr4_2:39823402-39823421 None:intergenic 40.0%
CTACAATGGTGCATTACAAG+TGG + chr4_2:39823487-39823506 Msa0599690:CDS 40.0%
ACAAAGTAACTCTCACGAGT+CGG - chr4_2:39823698-39823717 None:intergenic 40.0%
! CTCGTGAGAGTTACTTTGTA+AGG + chr4_2:39823699-39823718 Msa0599690:CDS 40.0%
TACATCTAGACGAAGGACTA+GGG - chr4_2:39823787-39823806 None:intergenic 40.0%
CTTCTTCTACATCTAGACGA+AGG - chr4_2:39823794-39823813 None:intergenic 40.0%
CTTCGTCTAGATGTAGAAGA+AGG + chr4_2:39823792-39823811 Msa0599690:CDS 40.0%
GATGCCAAATGGTTACTCAA+AGG + chr4_2:39823838-39823857 Msa0599690:CDS 40.0%
TTACATTTGACGCAGAAGCT+AGG + chr4_2:39823990-39824009 Msa0599690:intron 40.0%
!! TTTGTTGCTTCTGAAACGCA+CGG + chr4_2:39824014-39824033 Msa0599690:intron 40.0%
!! TGGACCGTAGTTCTAAATTG+TGG - chr4_2:39824219-39824238 None:intergenic 40.0%
GCCAACATATATAGGTGACA+TGG + chr4_2:39824418-39824437 Msa0599690:intron 40.0%
CCCATGTCACCTATATATGT+TGG - chr4_2:39824422-39824441 None:intergenic 40.0%
! ATGGGTTGAACATGTAGAAG+TGG + chr4_2:39824437-39824456 Msa0599690:CDS 40.0%
AACATGTAGAAGTGGATGAG+AGG + chr4_2:39824445-39824464 Msa0599690:CDS 40.0%
ACATGTAGAAGTGGATGAGA+GGG + chr4_2:39824446-39824465 Msa0599690:CDS 40.0%
TACAAGCAGATTGTTAGCAC+TGG + chr4_2:39824483-39824502 Msa0599690:CDS 40.0%
!! ATGCATTTGGTGCAAAACGT+TGG + chr4_2:39824508-39824527 Msa0599690:CDS 40.0%
!! TGCATTTGGTGCAAAACGTT+GGG + chr4_2:39824509-39824528 Msa0599690:CDS 40.0%
TGATAACAAACCAAGAAGGG+AGG + chr4_2:39824775-39824794 Msa0599690:CDS 40.0%
! GAGGAAGAGTATGTTGAAAC+TGG + chr4_2:39824794-39824813 Msa0599690:CDS 40.0%
! AAAACTTGTGTTGGTGGAAC+AGG - chr4_2:39824993-39825012 None:intergenic 40.0%
TAATGAGAACTCCAGAACTG+AGG + chr4_2:39825025-39825044 Msa0599690:CDS 40.0%
! ATGTTGCTCTGGCTTGAATT+TGG - chr4_2:39825484-39825503 None:intergenic 40.0%
!! GGAAGAAGTGCTACATAATC+TGG - chr4_2:39825607-39825626 None:intergenic 40.0%
TATGTAGCACTTCTTCCATC+AGG + chr4_2:39825610-39825629 Msa0599690:CDS 40.0%
ACTCCATTTCCATTTCCATC+AGG - chr4_2:39825649-39825668 None:intergenic 40.0%
GATGGAAATGGAAATGGAGT+CGG + chr4_2:39825649-39825668 Msa0599690:CDS 40.0%
TGATCCAAGAGAGAGTTTAG+CGG - chr4_2:39825761-39825780 None:intergenic 40.0%
TATAGTCGAGTTATAGGGCA+AGG + chr4_2:39826259-39826278 Msa0599690:intron 40.0%
TGCAGTTTACAAGGATGAAG+AGG + chr4_2:39826596-39826615 Msa0599690:intron 40.0%
TGAAGAGGTTGCATTGCTAA+TGG + chr4_2:39826611-39826630 Msa0599690:three_prime_UTR 40.0%
GAAGAGGTTGCATTGCTAAT+GGG + chr4_2:39826612-39826631 Msa0599690:three_prime_UTR 40.0%
AAGAGGTTGCATTGCTAATG+GGG + chr4_2:39826613-39826632 Msa0599690:three_prime_UTR 40.0%
AGGTGGTGAGGAACTTAATT+AGG + chr4_2:39826647-39826666 Msa0599690:three_prime_UTR 40.0%
GGTAGTAAGGTCATAGAGTT+AGG - chr4_2:39826784-39826803 None:intergenic 40.0%
!! ACCAGTCTTTTGTTTAGCCT+AGG + chr4_2:39826881-39826900 Msa0599690:three_prime_UTR 40.0%
AGGAAGAAAGAGAGAGAGTG+GGG - chr4_2:39819622-39819641 None:intergenic 45.0%
GAAGGAAGAAAGAGAGAGAG+TGG - chr4_2:39819624-39819643 None:intergenic 45.0%
!!! GAGAGATCCTGGTTTTGAGA+AGG - chr4_2:39819717-39819736 None:intergenic 45.0%
GTGAGAAAGAGTAGCAACGT+TGG + chr4_2:39820405-39820424 Msa0599690:five_prime_UTR 45.0%
!! TTGTGAGTGGTGTTGCAGTT+TGG - chr4_2:39820961-39820980 None:intergenic 45.0%
! TTTCGAAGCACTCGTCTTCT+CGG - chr4_2:39821423-39821442 None:intergenic 45.0%
TCCTGCAGTGAAAACCATGA+AGG + chr4_2:39821454-39821473 Msa0599690:CDS 45.0%
! ACCTTCATGGTTTTCACTGC+AGG - chr4_2:39821458-39821477 None:intergenic 45.0%
TGCAGTGAAAACCATGAAGG+TGG + chr4_2:39821457-39821476 Msa0599690:CDS 45.0%
TCAGCACCAGATCCAAGAAA+TGG + chr4_2:39821540-39821559 Msa0599690:CDS 45.0%
CCTTCCTTTGCTTGTCATCT+GGG - chr4_2:39821734-39821753 None:intergenic 45.0%
TCCTTCCTTTGCTTGTCATC+TGG - chr4_2:39821735-39821754 None:intergenic 45.0%
GCAGACACAACATGAACGTT+CGG + chr4_2:39821912-39821931 Msa0599690:intron 45.0%
GCTTCATGTCCTAATTGTGG+TGG + chr4_2:39822009-39822028 Msa0599690:CDS 45.0%
GTTATGGCTGTTGCACCATA+GGG - chr4_2:39822422-39822441 None:intergenic 45.0%
TGTTATGGCTGTTGCACCAT+AGG - chr4_2:39822423-39822442 None:intergenic 45.0%
ACTCGTACTTGGATCCCTTA+CGG - chr4_2:39822520-39822539 None:intergenic 45.0%
TCATTTGTGGCACTCGTACT+TGG - chr4_2:39822531-39822550 None:intergenic 45.0%
! CCAAAACCAATTTCTGGACG+CGG - chr4_2:39822734-39822753 None:intergenic 45.0%
!! GGTTTTGGCAATCAAGGGAT+TGG + chr4_2:39822746-39822765 Msa0599690:CDS 45.0%
GAGCCAGTGGAGATATTCTA+AGG + chr4_2:39822786-39822805 Msa0599690:intron 45.0%
!! ATTGGTTTGTCTGCTTCGGT+CGG - chr4_2:39822824-39822843 None:intergenic 45.0%
GCAGCTATGGAAGAGCTTAT+TGG + chr4_2:39822963-39822982 Msa0599690:CDS 45.0%
CTTATTGGGATGGCACAGAT+GGG + chr4_2:39822978-39822997 Msa0599690:CDS 45.0%
TATGTTAGGTCGTTTCCTCG+TGG + chr4_2:39823062-39823081 Msa0599690:CDS 45.0%
ATGTTAGGTCGTTTCCTCGT+GGG + chr4_2:39823063-39823082 Msa0599690:CDS 45.0%
GGGATTGGACCTAAACCTAA+TGG + chr4_2:39823083-39823102 Msa0599690:CDS 45.0%
GTTTCAAATGCGAAGCTTCG+AGG + chr4_2:39823105-39823124 Msa0599690:CDS 45.0%
TGTTTCAAGAGCTGTGACTG+TGG + chr4_2:39823436-39823455 Msa0599690:CDS 45.0%
!! ACTGTGGAAGTGTTGTCAAC+TGG + chr4_2:39823452-39823471 Msa0599690:CDS 45.0%
CTACATCTAGACGAAGGACT+AGG - chr4_2:39823788-39823807 None:intergenic 45.0%
AGATGTAGAAGAAGGCCTTC+TGG + chr4_2:39823800-39823819 Msa0599690:CDS 45.0%
CATGTAGAAGTGGATGAGAG+GGG + chr4_2:39824447-39824466 Msa0599690:CDS 45.0%
! GTTAGCACTGGACATGCATT+TGG + chr4_2:39824495-39824514 Msa0599690:CDS 45.0%
ACATACTCTTCCTCCCTTCT+TGG - chr4_2:39824788-39824807 None:intergenic 45.0%
GTTGAAACTGGCAGAGAGAA+TGG + chr4_2:39824806-39824825 Msa0599690:CDS 45.0%
CGTCATCACTCTCACATCAT+CGG - chr4_2:39824901-39824920 None:intergenic 45.0%
!! CGTAAGAGTGTTGATGATCC+TGG + chr4_2:39824921-39824940 Msa0599690:CDS 45.0%
GCACTAAGAACAATACCAGG+AGG - chr4_2:39824951-39824970 None:intergenic 45.0%
GCAGCACTAAGAACAATACC+AGG - chr4_2:39824954-39824973 None:intergenic 45.0%
TGGTGGAGTTGTGCAAGAAA+TGG + chr4_2:39825144-39825163 Msa0599690:CDS 45.0%
GAAATGGCGCACATTGCAAA+TGG + chr4_2:39825160-39825179 Msa0599690:CDS 45.0%
ATTGCAAATGGACGCGATAC+TGG + chr4_2:39825172-39825191 Msa0599690:CDS 45.0%
! GAGAGTGTAACAGATGCAAC+AGG + chr4_2:39825517-39825536 Msa0599690:CDS 45.0%
CATTTCCATTTCCATCAGGC+AGG - chr4_2:39825645-39825664 None:intergenic 45.0%
CTGCCTGATGGAAATGGAAA+TGG + chr4_2:39825643-39825662 Msa0599690:CDS 45.0%
!!! GACCGTCGCTTTTCAGATAT+TGG + chr4_2:39825720-39825739 Msa0599690:CDS 45.0%
AGAATCAAAGCTTCGCTGTC+TGG + chr4_2:39825820-39825839 Msa0599690:CDS 45.0%
GCACTAAATGCGGACAAATG+TGG + chr4_2:39826087-39826106 Msa0599690:intron 45.0%
TGTGGCTGCAATCGTGAATT+CGG + chr4_2:39826105-39826124 Msa0599690:intron 45.0%
GCCTAGGCTAAACAAAAGAC+TGG - chr4_2:39826885-39826904 None:intergenic 45.0%
!!! TTTTTTTTTATATTTTTATG+GGG + chr4_2:39819926-39819945 Msa0599690:intron 5.0%
!!! AACTTTTTATAATTATTATT+TGG - chr4_2:39821116-39821135 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG + chr4_2:39826850-39826869 Msa0599690:three_prime_UTR 5.0%
AGAGAGTGGGGAACAGATAG+AGG - chr4_2:39819610-39819629 None:intergenic 50.0%
AAAGGGAGCAAAACCCTTGC+AGG + chr4_2:39820344-39820363 Msa0599690:five_prime_UTR 50.0%
CAGTCAAACCTCTTGGAAGC+TGG + chr4_2:39821340-39821359 Msa0599690:CDS 50.0%
ACTCGTCTTCTCGGATTCGA+GGG - chr4_2:39821414-39821433 None:intergenic 50.0%
GAAGACGAGTGCTTCGAAAG+TGG + chr4_2:39821424-39821443 Msa0599690:CDS 50.0%
GCTGCTTCTGGTGAAGAACA+AGG + chr4_2:39821481-39821500 Msa0599690:CDS 50.0%
CTTTGCTTGTCATCTGGGTG+TGG - chr4_2:39821729-39821748 None:intergenic 50.0%
CACACCCAGATGACAAGCAA+AGG + chr4_2:39821727-39821746 Msa0599690:CDS 50.0%
CCCAGATGACAAGCAAAGGA+AGG + chr4_2:39821731-39821750 Msa0599690:CDS 50.0%
GCTGTTGGACCACCACAATT+AGG - chr4_2:39822021-39822040 None:intergenic 50.0%
TGTGGTGGTCCAACAGCTAT+AGG + chr4_2:39822024-39822043 Msa0599690:CDS 50.0%
CAGATACTCTACGGTCCCTA+TGG + chr4_2:39822404-39822423 Msa0599690:intron 50.0%
AGCACCATACAATCGCCGTA+AGG + chr4_2:39822502-39822521 Msa0599690:intron 50.0%
GCACCATACAATCGCCGTAA+GGG + chr4_2:39822503-39822522 Msa0599690:intron 50.0%
GATCCCTTACGGCGATTGTA+TGG - chr4_2:39822509-39822528 None:intergenic 50.0%
GAAGTACGTAGGAAAGCCAG+TGG + chr4_2:39822676-39822695 Msa0599690:CDS 50.0%
! AACCAATTTCTGGACGCGGT+GGG - chr4_2:39822730-39822749 None:intergenic 50.0%
! AAACCAATTTCTGGACGCGG+TGG - chr4_2:39822731-39822750 None:intergenic 50.0%
!! CCGCGTCCAGAAATTGGTTT+TGG + chr4_2:39822731-39822750 Msa0599690:CDS 50.0%
ATGGACATGTATGGAGCCAG+TGG + chr4_2:39822773-39822792 Msa0599690:intron 50.0%
GCTTATTGGGATGGCACAGA+TGG + chr4_2:39822977-39822996 Msa0599690:CDS 50.0%
CACAGATGGGTGATCCTCTT+TGG + chr4_2:39822991-39823010 Msa0599690:CDS 50.0%
AGAACAGTAGCAGCTCCATC+AGG - chr4_2:39823029-39823048 None:intergenic 50.0%
CAGCAAACACCGTTGACCAT+TGG - chr4_2:39823412-39823431 None:intergenic 50.0%
CAATGGTCAACGGTGTTTGC+TGG + chr4_2:39823410-39823429 Msa0599690:CDS 50.0%
!! GGAAGTGTTGTCAACTGGAG+TGG + chr4_2:39823457-39823476 Msa0599690:CDS 50.0%
TGTTGTCAACTGGAGTGGCA+GGG + chr4_2:39823462-39823481 Msa0599690:CDS 50.0%
GGCAGTTGTGGATGTGTCTT+TGG + chr4_2:39823751-39823770 Msa0599690:CDS 50.0%
CATGACGCAGAACCAAACGA+AGG - chr4_2:39823947-39823966 None:intergenic 50.0%
!! TGAAAGGCTTGCTAGCTCCA+TGG + chr4_2:39824554-39824573 Msa0599690:CDS 50.0%
! GGTCGGAATGTTTGTTGCCA+TGG - chr4_2:39824574-39824593 None:intergenic 50.0%
GTGCTTCAACAGCACACACA+TGG + chr4_2:39824853-39824872 Msa0599690:CDS 50.0%
CACACATGGACAACACTGTC+TGG + chr4_2:39824867-39824886 Msa0599690:CDS 50.0%
! TGGACAACACTGTCTGGAAC+AGG + chr4_2:39824873-39824892 Msa0599690:CDS 50.0%
ACAATACCAGGAGGTCTTCC+AGG - chr4_2:39824942-39824961 None:intergenic 50.0%
GGCAGGATAGCAAATCCTGA+TGG - chr4_2:39825628-39825647 None:intergenic 50.0%
!! GGATTTGCTATCCTGCCTGA+TGG + chr4_2:39825631-39825650 Msa0599690:CDS 50.0%
GCTATCCTGCCTGATGGAAA+TGG + chr4_2:39825637-39825656 Msa0599690:CDS 50.0%
GGAAATGGAAATGGAGTCGG+CGG + chr4_2:39825652-39825671 Msa0599690:CDS 50.0%
CTGAAAAGCGACGGTCAGAA+GGG - chr4_2:39825716-39825735 None:intergenic 50.0%
TCTGAAAAGCGACGGTCAGA+AGG - chr4_2:39825717-39825736 None:intergenic 50.0%
CCAAGAGAGAGTTTAGCGGT+TGG - chr4_2:39825757-39825776 None:intergenic 50.0%
CCAACCGCTAAACTCTCTCT+TGG + chr4_2:39825754-39825773 Msa0599690:CDS 50.0%
! TTCGGGAATTGACTTCCCCT+AGG + chr4_2:39826743-39826762 Msa0599690:three_prime_UTR 50.0%
GGAACTGACCAGCTTCCAAG+AGG - chr4_2:39821351-39821370 None:intergenic 55.0%
CACTCGTCTTCTCGGATTCG+AGG - chr4_2:39821415-39821434 None:intergenic 55.0%
CAGAAGCAGCACCACCTTCA+TGG - chr4_2:39821471-39821490 None:intergenic 55.0%
!! CATGAAGGTGGTGCTGCTTC+TGG + chr4_2:39821469-39821488 Msa0599690:CDS 55.0%
! CTTGGATCTGGTGCTGAGTG+TGG - chr4_2:39821537-39821556 None:intergenic 55.0%
ACGATGGCAGCGAAGTACGT+AGG + chr4_2:39822665-39822684 Msa0599690:CDS 55.0%
AGGTCGTTTCCTCGTGGGAT+TGG + chr4_2:39823068-39823087 Msa0599690:CDS 55.0%
GGTTTAGGTCCAATCCCACG+AGG - chr4_2:39823080-39823099 None:intergenic 55.0%
GTGTTGTCAACTGGAGTGGC+AGG + chr4_2:39823461-39823480 Msa0599690:CDS 55.0%
GGAGTGGCAGGGAACTACAA+TGG + chr4_2:39823473-39823492 Msa0599690:CDS 55.0%
AACAACATCCTGACGGGACC+TGG + chr4_2:39823729-39823748 Msa0599690:CDS 55.0%
ACAACATCCTGACGGGACCT+GGG + chr4_2:39823730-39823749 Msa0599690:CDS 55.0%
AGACACATCCACAACTGCCC+AGG - chr4_2:39823750-39823769 None:intergenic 55.0%
GATGATCCTGGAAGACCTCC+TGG + chr4_2:39824933-39824952 Msa0599690:CDS 55.0%
AATGGAGTCGGCGGTGAAAC+TGG + chr4_2:39825661-39825680 Msa0599690:CDS 55.0%
! GGATCTGGTGCTGAGTGTGG+CGG - chr4_2:39821534-39821553 None:intergenic 60.0%
CTCCCACCGCGTCCAGAAAT+TGG + chr4_2:39822725-39822744 Msa0599690:CDS 60.0%
CGAGTCGGCACAAGAGGTGA+GGG - chr4_2:39823683-39823702 None:intergenic 60.0%
ACGAGTCGGCACAAGAGGTG+AGG - chr4_2:39823684-39823703 None:intergenic 60.0%
CTCTCACGAGTCGGCACAAG+AGG - chr4_2:39823689-39823708 None:intergenic 60.0%
TCTGGACGCGGTGGGAGAGA+TGG - chr4_2:39822722-39822741 None:intergenic 65.0%
ACAACTGCCCAGGTCCCGTC+AGG - chr4_2:39823740-39823759 None:intergenic 65.0%
TGACGGGACCTGGGCAGTTG+TGG + chr4_2:39823739-39823758 Msa0599690:CDS 65.0%
GGAGTCGGCGGTGAAACTGG+CGG + chr4_2:39825664-39825683 Msa0599690:CDS 65.0%
GCGGTGAAACTGGCGGAGGA+GGG + chr4_2:39825671-39825690 Msa0599690:CDS 65.0%
CGGTGAAACTGGCGGAGGAG+GGG + chr4_2:39825672-39825691 Msa0599690:CDS 65.0%
GGTGAAACTGGCGGAGGAGG+GGG + chr4_2:39825673-39825692 Msa0599690:CDS 65.0%
GTCGGCGGTGAAACTGGCGG+AGG + chr4_2:39825667-39825686 Msa0599690:CDS 70.0%
GGCGGTGAAACTGGCGGAGG+AGG + chr4_2:39825670-39825689 Msa0599690:CDS 70.0%
ACTGGCGGAGGAGGGGGAGC+TGG + chr4_2:39825679-39825698 Msa0599690:CDS 75.0%
GGAGGAGGGGGAGCTGGTGC+TGG + chr4_2:39825685-39825704 Msa0599690:CDS 75.0%
! GGAGGGGGAGCTGGTGCTGG+TGG + chr4_2:39825688-39825707 Msa0599690:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 39819600 39827079 39819600 ID=Msa0599690;Name=Msa0599690
chr4_2 mRNA 39819600 39827079 39819600 ID=Msa0599690-mRNA-1;Parent=Msa0599690;Name=Msa0599690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=465|0.92|0.86|1|0.71|0.6|15|489|702
chr4_2 exon 39819600 39819808 39819600 ID=Msa0599690-mRNA-1:exon:8668;Parent=Msa0599690-mRNA-1
chr4_2 exon 39820288 39820478 39820288 ID=Msa0599690-mRNA-1:exon:8669;Parent=Msa0599690-mRNA-1
chr4_2 exon 39821269 39821566 39821269 ID=Msa0599690-mRNA-1:exon:8670;Parent=Msa0599690-mRNA-1
chr4_2 exon 39821710 39821827 39821710 ID=Msa0599690-mRNA-1:exon:8671;Parent=Msa0599690-mRNA-1
chr4_2 exon 39821916 39822104 39821916 ID=Msa0599690-mRNA-1:exon:8672;Parent=Msa0599690-mRNA-1
chr4_2 exon 39822650 39822767 39822650 ID=Msa0599690-mRNA-1:exon:8673;Parent=Msa0599690-mRNA-1
chr4_2 exon 39822958 39823184 39822958 ID=Msa0599690-mRNA-1:exon:8674;Parent=Msa0599690-mRNA-1
chr4_2 exon 39823407 39823508 39823407 ID=Msa0599690-mRNA-1:exon:8675;Parent=Msa0599690-mRNA-1
chr4_2 exon 39823659 39823859 39823659 ID=Msa0599690-mRNA-1:exon:8676;Parent=Msa0599690-mRNA-1
chr4_2 exon 39824432 39824606 39824432 ID=Msa0599690-mRNA-1:exon:8677;Parent=Msa0599690-mRNA-1
chr4_2 exon 39824775 39825046 39824775 ID=Msa0599690-mRNA-1:exon:8678;Parent=Msa0599690-mRNA-1
chr4_2 exon 39825127 39825222 39825127 ID=Msa0599690-mRNA-1:exon:8679;Parent=Msa0599690-mRNA-1
chr4_2 exon 39825478 39825886 39825478 ID=Msa0599690-mRNA-1:exon:8680;Parent=Msa0599690-mRNA-1
chr4_2 exon 39826601 39826981 39826601 ID=Msa0599690-mRNA-1:exon:8681;Parent=Msa0599690-mRNA-1
chr4_2 exon 39827003 39827079 39827003 ID=Msa0599690-mRNA-1:exon:8682;Parent=Msa0599690-mRNA-1
chr4_2 five_prime_UTR 39819600 39819808 39819600 ID=Msa0599690-mRNA-1:five_prime_utr;Parent=Msa0599690-mRNA-1
chr4_2 five_prime_UTR 39820288 39820478 39820288 ID=Msa0599690-mRNA-1:five_prime_utr;Parent=Msa0599690-mRNA-1
chr4_2 five_prime_UTR 39821269 39821333 39821269 ID=Msa0599690-mRNA-1:five_prime_utr;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39821334 39821566 39821334 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39821710 39821827 39821710 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39821916 39822104 39821916 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39822650 39822767 39822650 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39822958 39823184 39822958 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39823407 39823508 39823407 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39823659 39823859 39823659 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39824432 39824606 39824432 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39824775 39825046 39824775 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39825127 39825222 39825127 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 CDS 39825478 39825855 39825478 ID=Msa0599690-mRNA-1:cds;Parent=Msa0599690-mRNA-1
chr4_2 three_prime_UTR 39825856 39825886 39825856 ID=Msa0599690-mRNA-1:three_prime_utr;Parent=Msa0599690-mRNA-1
chr4_2 three_prime_UTR 39826601 39826981 39826601 ID=Msa0599690-mRNA-1:three_prime_utr;Parent=Msa0599690-mRNA-1
chr4_2 three_prime_UTR 39827003 39827079 39827003 ID=Msa0599690-mRNA-1:three_prime_utr;Parent=Msa0599690-mRNA-1
Gene Sequence

>Msa0599690

ATGTTTCAGTCAAACCTCTTGGAAGCTGGTCAGTTCCATCCATTAGAGATGATGCAAAACACTTCAGAAAGCGATGTCCCTCGAATCCGAGAAGACGAGTGCTTCGAAAGTGGCACCAAATCCTGCAGTGAAAACCATGAAGGTGGTGCTGCTTCTGGTGAAGAACAAGGACCACGTCCCAAAAGAAAACGTTATCACCGCCACACTCAGCACCAGATCCAAGAAATGGAATCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGTTAAGCAGAGAGTTAGGGCTTGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAAAGGACTCAGATGAAGACACAACATGAACGTTCGGAGAATTCTCAGCTAAGAGCAGAAAATGAAAAGCTTAGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCAACAGCTATAGGTGAAATGTCATTTGATGAACATCATTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATAGAATTTCAACGATGGCAGCGAAGTACGTAGGAAAGCCAGTGGTAAACTATTCAAACATTTCACCATCTCTCCCACCGCGTCCAGAAATTGGTTTTGGCAATCAAGGGATTGCTGTTGCAGCTATGGAAGAGCTTATTGGGATGGCACAGATGGGTGATCCTCTTTGGTTAAGTACTACACCTGATGGAGCTGCTACTGTTCTTAATGAAGATGAATATGTTAGGTCGTTTCCTCGTGGGATTGGACCTAAACCTAATGGTTTCAAATGCGAAGCTTCGAGGGAATCTAGCGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAACGGTGTTTGCTGGTATTGTTTCAAGAGCTGTGACTGTGGAAGTGTTGTCAACTGGAGTGGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCAGAGTTTCAAGTACCCTCACCTCTTGTGCCGACTCGTGAGAGTTACTTTGTAAGGTATTGTAAACAACATCCTGACGGGACCTGGGCAGTTGTGGATGTGTCTTTGGATAATCTGCGCCCTAGTCCTTCGTCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAGATGCCAAATGGTTACTCAAAGGTGACATGGGTTGAACATGTAGAAGTGGATGAGAGGGGTATTCCTAATCTATACAAGCAGATTGTTAGCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGACAATGTGAAAGGCTTGCTAGCTCCATGGCAACAAACATTCCGACCGTAGATGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGTATGTTGAAACTGGCAGAGAGAATGGTGATAAGTTTTTGTGGTGGAGTGAGTGCTTCAACAGCACACACATGGACAACACTGTCTGGAACAGGAGCCGATGATGTGAGAGTGATGACGCGTAAGAGTGTTGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCACCAACACAAGTTTTTGAATTTCTTCGTAATGAGAACTCCAGAACTGAGTGGGATATTCTTTCTAATGGTGGAGTTGTGCAAGAAATGGCGCACATTGCAAATGGACGCGATACTGGAAACAGTGTCTCTCTCCTTAGAGTAAATAGTCCAAATTCAAGCCAGAGCAACATGTTAATACTACAAGAGAGTGTAACAGATGCAACAGGCTCATTTGTTATCTATGCACCGGTAGATATAGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCAGGATTTGCTATCCTGCCTGATGGAAATGGAAATGGAGTCGGCGGTGAAACTGGCGGAGGAGGGGGAGCTGGTGCTGGTGGATCCCTTCTGACCGTCGCTTTTCAGATATTGGTTGATTCTACTCCAACCGCTAAACTCTCTCTTGGATCAGTTGCTACTGTTAATAGTCTTATTGCTTGTACTGTTGAGAGAATCAAAGCTTCGCTGTCTGGTGAAAGTGCTTAG

Protein sequence

>Msa0599690

MFQSNLLEAGQFHPLEMMQNTSESDVPRIREDECFESGTKSCSENHEGGAASGEEQGPRPKRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISTMAAKYVGKPVVNYSNISPSLPPRPEIGFGNQGIAVAAMEELIGMAQMGDPLWLSTTPDGAATVLNEDEYVRSFPRGIGPKPNGFKCEASRESSVVIMNHVNLVEILMDVNQWSTVFAGIVSRAVTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHPDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDERGIPNLYKQIVSTGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPTQVFEFLRNENSRTEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSPNSSQSNMLILQESVTDATGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNGNGVGGETGGGGGAGAGGSLLTVAFQILVDSTPTAKLSLGSVATVNSLIACTVERIKASLSGESA*