AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0843290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843290 MtrunA17_Chr5g0413971 94.231 156 9 0 1 156 1 156 2.67e-111 312
Msa0843290 MtrunA17_Chr8g0339261 29.139 151 106 1 1 151 1 150 3.05e-19 79.0
Msa0843290 MtrunA17_Chr1g0160371 31.373 153 98 5 3 151 1 150 5.87e-15 67.8
Msa0843290 MtrunA17_Chr1g0160381 30.323 155 97 6 3 151 5 154 1.16e-13 64.7
Msa0843290 MtrunA17_Chr1g0160801 29.630 135 86 5 9 141 7 134 1.26e-12 61.6
Msa0843290 MtrunA17_Chr1g0160391 31.852 135 82 4 3 130 1 132 1.53e-12 61.6
Msa0843290 MtrunA17_Chr8g0355741 26.452 155 110 4 3 155 1 153 1.27e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843290 AT1G24020.1 51.678 149 72 0 3 151 1 149 2.75e-55 171
Msa0843290 AT1G24020.2 51.678 149 72 0 3 151 1 149 2.75e-55 171
Msa0843290 AT1G70830.5 34.868 152 96 2 2 151 19 169 1.43e-22 88.6
Msa0843290 AT1G70840.1 36.667 150 92 2 4 151 19 167 2.41e-22 87.8
Msa0843290 AT1G70830.3 34.868 152 96 2 2 151 19 169 2.74e-22 88.6
Msa0843290 AT1G70830.2 34.868 152 96 2 2 151 19 169 9.27e-22 88.2
Msa0843290 AT1G70850.2 34.416 154 98 2 2 153 6 158 1.47e-21 87.4
Msa0843290 AT1G70830.1 34.868 152 96 2 2 151 19 169 2.30e-21 88.6
Msa0843290 AT1G70830.1 33.333 150 97 2 4 151 183 331 1.35e-19 84.0
Msa0843290 AT1G70850.3 34.416 154 98 2 2 153 6 158 4.38e-21 87.4
Msa0843290 AT1G70850.3 33.813 139 89 2 15 151 175 312 1.60e-17 77.8
Msa0843290 AT1G70850.1 34.416 154 98 2 2 153 6 158 4.38e-21 87.4
Msa0843290 AT1G70850.1 33.813 139 89 2 15 151 175 312 1.60e-17 77.8
Msa0843290 AT1G70890.1 35.526 152 95 3 2 151 4 154 2.35e-20 82.4
Msa0843290 AT5G28010.1 32.237 152 100 2 4 153 14 164 5.38e-20 81.6
Msa0843290 AT5G28010.2 32.237 152 100 2 4 153 14 164 5.38e-20 81.6
Msa0843290 AT1G70830.4 33.333 150 97 2 4 151 136 284 6.66e-20 84.0
Msa0843290 AT5G28000.1 31.579 152 101 2 4 153 12 162 1.60e-17 75.1
Msa0843290 AT1G70880.1 31.169 154 103 3 2 153 5 157 3.58e-17 74.3
Msa0843290 AT1G14930.1 27.815 151 104 3 3 151 1 148 1.24e-13 64.7
Msa0843290 AT1G35260.1 31.081 148 96 4 9 153 6 150 1.63e-13 64.3
Msa0843290 AT1G23120.1 28.571 147 91 5 9 154 7 140 1.22e-11 59.3
Msa0843290 AT1G23120.2 28.571 154 96 5 2 154 50 190 2.61e-11 59.3
Msa0843290 AT3G26460.1 25.333 150 110 2 3 151 1 149 8.31e-11 57.4

Find 43 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATCACATTAAATAAAA+AGG 0.223692 5_4:+20969588 None:intergenic
CTTTGTTCCTTTGTTATTGT+TGG 0.299203 5_4:-20969554 Msa0843290:three_prime_UTR
TAGTCATGTGGGAAGGCCTT+AGG 0.333006 5_4:+20970593 None:intergenic
AATAGTTGTAGAATCCCTTA+TGG 0.338562 5_4:+20970619 None:intergenic
GCAAAATCTTTGACAATAGT+TGG 0.338740 5_4:+20969753 None:intergenic
CTTTCTAGCTTATTGAATCA+TGG 0.378434 5_4:-20970711 Msa0843290:exon
ATCCCCTTCAATTATACAAT+AGG 0.381348 5_4:+20969890 None:intergenic
ATCTCACATCCTTCTCCAAC+TGG 0.381866 5_4:+20969822 None:intergenic
TGATTTAAATTTAATGAGAA+TGG 0.383658 5_4:-20969493 Msa0843290:three_prime_UTR
CCTTGAATGATTTGTAGTAT+TGG 0.436050 5_4:+20969862 None:intergenic
CCAATACTACAAATCATTCA+AGG 0.446219 5_4:-20969862 Msa0843290:CDS
AGTCTAATGCAGACAAGTAC+TGG 0.454231 5_4:-20970646 Msa0843290:CDS
AGTCATGTGGGAAGGCCTTA+GGG 0.459268 5_4:+20970594 None:intergenic
TTAAATCATAACAATTAAAG+AGG 0.466331 5_4:+20969508 None:intergenic
GAGAAGGATGTGAGATGAAA+TGG 0.470943 5_4:-20969815 Msa0843290:CDS
TGCATTTGATGATGAGTTGA+AGG 0.473972 5_4:-20969668 Msa0843290:three_prime_UTR
ACAAGTACTGGCAAACCATA+AGG 0.476885 5_4:-20970634 Msa0843290:CDS
GAGGGTGATGGTAAAGCTCC+TGG 0.482745 5_4:-20970551 Msa0843290:CDS
TCTTTGACAATAGTTGGATC+AGG 0.487708 5_4:+20969759 None:intergenic
GTGAAGTGGCGGATAGAGCC+AGG 0.488549 5_4:+20970533 None:intergenic
GCAACCTATTGTATAATTGA+AGG 0.505768 5_4:-20969894 Msa0843290:CDS
AAAAGCATTGAGGTCCTTGA+GGG 0.507266 5_4:-20970569 Msa0843290:CDS
CAAGTACTGGCAAACCATAA+GGG 0.509772 5_4:-20970633 Msa0843290:CDS
AAATGTATTGTTACATAATG+TGG 0.517276 5_4:-20969623 Msa0843290:three_prime_UTR
ATCATGGCTGTAGCTCTTCG+TGG 0.517791 5_4:-20970695 Msa0843290:CDS
CAACCTATTGTATAATTGAA+GGG 0.524179 5_4:-20969893 Msa0843290:CDS
TACCTTCAGCATAAGTGAAG+TGG 0.548909 5_4:+20970519 None:intergenic
TGCAGTCAAGAACTTCATTG+AGG 0.557320 5_4:-20969733 Msa0843290:CDS
CAAAAGCATTGAGGTCCTTG+AGG 0.558857 5_4:-20970570 Msa0843290:CDS
CGCCACTTCACTTATGCTGA+AGG 0.559188 5_4:-20970521 Msa0843290:intron
ATTGAGGTCCTTGAGGGTGA+TGG 0.560374 5_4:-20970563 Msa0843290:CDS
CATCTTGCTGTAACACCAGT+TGG 0.560972 5_4:-20969837 Msa0843290:CDS
CAATACTACAAATCATTCAA+GGG 0.584423 5_4:-20969861 Msa0843290:CDS
GCTGTAACACCAGTTGGAGA+AGG 0.585512 5_4:-20969831 Msa0843290:CDS
AACCTATTGTATAATTGAAG+GGG 0.589185 5_4:-20969892 Msa0843290:CDS
CATTAAACCAACAATAACAA+AGG 0.608132 5_4:+20969547 None:intergenic
GAGCTTTACCATCACCCTCA+AGG 0.617751 5_4:+20970555 None:intergenic
ATGCTGCTGATGATGAAAAG+AGG 0.618271 5_4:-20969920 Msa0843290:CDS
AGTCAAGAACTTCATTGAGG+TGG 0.628959 5_4:-20969730 Msa0843290:CDS
ACAACTCGCGAAGTCTTCGA+CGG 0.637947 5_4:-20969952 Msa0843290:CDS
CTTCAGCATAAGTGAAGTGG+CGG 0.638511 5_4:+20970522 None:intergenic
AGCTCTTCGTGGAAAGCTAG+AGG 0.660101 5_4:-20970684 Msa0843290:CDS
ACATGACTACAAAAGCATTG+AGG 0.674108 5_4:-20970579 Msa0843290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATCACATTAAATAAAAA+GGG + chr5_4:20970668-20970687 None:intergenic 15.0%
!! ATAGATCACATTAAATAAAA+AGG + chr5_4:20970669-20970688 None:intergenic 15.0%
!! TTAAATCATAACAATTAAAG+AGG + chr5_4:20970749-20970768 None:intergenic 15.0%
!! TGATTTAAATTTAATGAGAA+TGG - chr5_4:20970761-20970780 Msa0843290:five_prime_UTR 15.0%
!! TAGATCACATTAAATAAAAA+GGG + chr5_4:20970668-20970687 None:intergenic 15.0%
!! ATAGATCACATTAAATAAAA+AGG + chr5_4:20970669-20970688 None:intergenic 15.0%
!! TTAAATCATAACAATTAAAG+AGG + chr5_4:20970749-20970768 None:intergenic 15.0%
!! TGATTTAAATTTAATGAGAA+TGG - chr5_4:20970761-20970780 Msa0843290:five_prime_UTR 15.0%
!! ATGATGAAATTCAGTAAATA+AGG - chr5_4:20969936-20969955 Msa0843290:CDS 20.0%
!! TGATGAAATTCAGTAAATAA+GGG - chr5_4:20969937-20969956 Msa0843290:CDS 20.0%
!! ACACAATGTTCAAATAAAAT+TGG + chr5_4:20970090-20970109 None:intergenic 20.0%
!! AAATGTATTGTTACATAATG+TGG - chr5_4:20970631-20970650 Msa0843290:CDS 20.0%
!! ATGATGAAATTCAGTAAATA+AGG - chr5_4:20969936-20969955 Msa0843290:CDS 20.0%
!! TGATGAAATTCAGTAAATAA+GGG - chr5_4:20969937-20969956 Msa0843290:CDS 20.0%
!! ACACAATGTTCAAATAAAAT+TGG + chr5_4:20970090-20970109 None:intergenic 20.0%
!! AAATGTATTGTTACATAATG+TGG - chr5_4:20970631-20970650 Msa0843290:CDS 20.0%
! AATTTAGAGACTTTCTTCTT+TGG - chr5_4:20969759-20969778 Msa0843290:CDS 25.0%
! AAAGTGAGTATTATGTATGT+CGG + chr5_4:20969864-20969883 None:intergenic 25.0%
!! AGTAAATAAGGGTATATCAA+TGG - chr5_4:20969948-20969967 Msa0843290:CDS 25.0%
! GATGATTAAAATGAGACATA+GGG - chr5_4:20970032-20970051 Msa0843290:intron 25.0%
! TGAACATTGTGTATTTATTG+AGG - chr5_4:20970098-20970117 Msa0843290:intron 25.0%
! GAACATTGTGTATTTATTGA+GGG - chr5_4:20970099-20970118 Msa0843290:intron 25.0%
! TCATACATTCTTATCTGATT+TGG - chr5_4:20970260-20970279 Msa0843290:intron 25.0%
! CAACCTATTGTATAATTGAA+GGG - chr5_4:20970361-20970380 Msa0843290:intron 25.0%
! AACCTATTGTATAATTGAAG+GGG - chr5_4:20970362-20970381 Msa0843290:intron 25.0%
! CAATACTACAAATCATTCAA+GGG - chr5_4:20970393-20970412 Msa0843290:intron 25.0%
! CATTAAACCAACAATAACAA+AGG + chr5_4:20970710-20970729 None:intergenic 25.0%
! AATTTAGAGACTTTCTTCTT+TGG - chr5_4:20969759-20969778 Msa0843290:CDS 25.0%
! AAAGTGAGTATTATGTATGT+CGG + chr5_4:20969864-20969883 None:intergenic 25.0%
!! AGTAAATAAGGGTATATCAA+TGG - chr5_4:20969948-20969967 Msa0843290:CDS 25.0%
! GATGATTAAAATGAGACATA+GGG - chr5_4:20970032-20970051 Msa0843290:intron 25.0%
! TGAACATTGTGTATTTATTG+AGG - chr5_4:20970098-20970117 Msa0843290:intron 25.0%
! GAACATTGTGTATTTATTGA+GGG - chr5_4:20970099-20970118 Msa0843290:intron 25.0%
! TCATACATTCTTATCTGATT+TGG - chr5_4:20970260-20970279 Msa0843290:intron 25.0%
! CAACCTATTGTATAATTGAA+GGG - chr5_4:20970361-20970380 Msa0843290:intron 25.0%
! AACCTATTGTATAATTGAAG+GGG - chr5_4:20970362-20970381 Msa0843290:intron 25.0%
! CAATACTACAAATCATTCAA+GGG - chr5_4:20970393-20970412 Msa0843290:intron 25.0%
! CATTAAACCAACAATAACAA+AGG + chr5_4:20970710-20970729 None:intergenic 25.0%
!! CTTTCTAGCTTATTGAATCA+TGG - chr5_4:20969543-20969562 Msa0843290:three_prime_UTR 30.0%
AATAGTTGTAGAATCCCTTA+TGG + chr5_4:20969638-20969657 None:intergenic 30.0%
! TTCTACAACTATTTTCCCTA+AGG - chr5_4:20969645-20969664 Msa0843290:three_prime_UTR 30.0%
CGATGATTAAAATGAGACAT+AGG - chr5_4:20970031-20970050 Msa0843290:intron 30.0%
!! TACATTCTTATCTGATTTGG+TGG - chr5_4:20970263-20970282 Msa0843290:intron 30.0%
!! ACATTCTTATCTGATTTGGT+GGG - chr5_4:20970264-20970283 Msa0843290:intron 30.0%
GCAACCTATTGTATAATTGA+AGG - chr5_4:20970360-20970379 Msa0843290:intron 30.0%
ATCCCCTTCAATTATACAAT+AGG + chr5_4:20970367-20970386 None:intergenic 30.0%
! CCTTGAATGATTTGTAGTAT+TGG + chr5_4:20970395-20970414 None:intergenic 30.0%
CCAATACTACAAATCATTCA+AGG - chr5_4:20970392-20970411 Msa0843290:intron 30.0%
GCAAAATCTTTGACAATAGT+TGG + chr5_4:20970504-20970523 None:intergenic 30.0%
!! CTTTGTTCCTTTGTTATTGT+TGG - chr5_4:20970700-20970719 Msa0843290:exon 30.0%
!! CTTTCTAGCTTATTGAATCA+TGG - chr5_4:20969543-20969562 Msa0843290:three_prime_UTR 30.0%
AATAGTTGTAGAATCCCTTA+TGG + chr5_4:20969638-20969657 None:intergenic 30.0%
! TTCTACAACTATTTTCCCTA+AGG - chr5_4:20969645-20969664 Msa0843290:three_prime_UTR 30.0%
CGATGATTAAAATGAGACAT+AGG - chr5_4:20970031-20970050 Msa0843290:intron 30.0%
!! TACATTCTTATCTGATTTGG+TGG - chr5_4:20970263-20970282 Msa0843290:intron 30.0%
!! ACATTCTTATCTGATTTGGT+GGG - chr5_4:20970264-20970283 Msa0843290:intron 30.0%
GCAACCTATTGTATAATTGA+AGG - chr5_4:20970360-20970379 Msa0843290:intron 30.0%
ATCCCCTTCAATTATACAAT+AGG + chr5_4:20970367-20970386 None:intergenic 30.0%
! CCTTGAATGATTTGTAGTAT+TGG + chr5_4:20970395-20970414 None:intergenic 30.0%
CCAATACTACAAATCATTCA+AGG - chr5_4:20970392-20970411 Msa0843290:intron 30.0%
GCAAAATCTTTGACAATAGT+TGG + chr5_4:20970504-20970523 None:intergenic 30.0%
!! CTTTGTTCCTTTGTTATTGT+TGG - chr5_4:20970700-20970719 Msa0843290:exon 30.0%
! CAATGCTTTTGTAGTCATGT+GGG + chr5_4:20969675-20969694 None:intergenic 35.0%
! TCAATGCTTTTGTAGTCATG+TGG + chr5_4:20969676-20969695 None:intergenic 35.0%
!! ACATGACTACAAAAGCATTG+AGG - chr5_4:20969675-20969694 Msa0843290:three_prime_UTR 35.0%
TCTTCTTTGGTAGAGAATGA+AGG - chr5_4:20969772-20969791 Msa0843290:CDS 35.0%
CTTCTTTGGTAGAGAATGAA+GGG - chr5_4:20969773-20969792 Msa0843290:CDS 35.0%
!!! TAGAGAATGAAGGGCATTTT+GGG - chr5_4:20969782-20969801 Msa0843290:CDS 35.0%
GTCAAATGCAACGAATATTG+TGG + chr5_4:20969890-20969909 None:intergenic 35.0%
AAAATGAGACATAGGGAGTA+TGG - chr5_4:20970039-20970058 Msa0843290:intron 35.0%
TTGTGTATTTATTGAGGGAG+AGG - chr5_4:20970104-20970123 Msa0843290:intron 35.0%
AAAGCGATACATGAATCTCT+TGG + chr5_4:20970197-20970216 None:intergenic 35.0%
TCTTTGACAATAGTTGGATC+AGG + chr5_4:20970498-20970517 None:intergenic 35.0%
!! TGCATTTGATGATGAGTTGA+AGG - chr5_4:20970586-20970605 Msa0843290:CDS 35.0%
! CAATGCTTTTGTAGTCATGT+GGG + chr5_4:20969675-20969694 None:intergenic 35.0%
! TCAATGCTTTTGTAGTCATG+TGG + chr5_4:20969676-20969695 None:intergenic 35.0%
!! ACATGACTACAAAAGCATTG+AGG - chr5_4:20969675-20969694 Msa0843290:three_prime_UTR 35.0%
TCTTCTTTGGTAGAGAATGA+AGG - chr5_4:20969772-20969791 Msa0843290:CDS 35.0%
CTTCTTTGGTAGAGAATGAA+GGG - chr5_4:20969773-20969792 Msa0843290:CDS 35.0%
!!! TAGAGAATGAAGGGCATTTT+GGG - chr5_4:20969782-20969801 Msa0843290:CDS 35.0%
GTCAAATGCAACGAATATTG+TGG + chr5_4:20969890-20969909 None:intergenic 35.0%
AAAATGAGACATAGGGAGTA+TGG - chr5_4:20970039-20970058 Msa0843290:intron 35.0%
TTGTGTATTTATTGAGGGAG+AGG - chr5_4:20970104-20970123 Msa0843290:intron 35.0%
AAAGCGATACATGAATCTCT+TGG + chr5_4:20970197-20970216 None:intergenic 35.0%
TCTTTGACAATAGTTGGATC+AGG + chr5_4:20970498-20970517 None:intergenic 35.0%
!! TGCATTTGATGATGAGTTGA+AGG - chr5_4:20970586-20970605 Msa0843290:CDS 35.0%
AGTCTAATGCAGACAAGTAC+TGG - chr5_4:20969608-20969627 Msa0843290:three_prime_UTR 40.0%
!! ACAAGTACTGGCAAACCATA+AGG - chr5_4:20969620-20969639 Msa0843290:three_prime_UTR 40.0%
!! CAAGTACTGGCAAACCATAA+GGG - chr5_4:20969621-20969640 Msa0843290:three_prime_UTR 40.0%
!! AAAAGCATTGAGGTCCTTGA+GGG - chr5_4:20969685-20969704 Msa0843290:exon 40.0%
TACCTTCAGCATAAGTGAAG+TGG + chr5_4:20969738-20969757 None:intergenic 40.0%
!!! GTAGAGAATGAAGGGCATTT+TGG - chr5_4:20969781-20969800 Msa0843290:CDS 40.0%
AGAGACACTAGGTCATACAT+TGG - chr5_4:20970128-20970147 Msa0843290:intron 40.0%
!! GATTTGGTGGGCTATATTGT+AGG - chr5_4:20970276-20970295 Msa0843290:intron 40.0%
! ATGCTGCTGATGATGAAAAG+AGG - chr5_4:20970334-20970353 Msa0843290:intron 40.0%
GAGAAGGATGTGAGATGAAA+TGG - chr5_4:20970439-20970458 Msa0843290:intron 40.0%
TGCAGTCAAGAACTTCATTG+AGG - chr5_4:20970521-20970540 Msa0843290:intron 40.0%
AGTCAAGAACTTCATTGAGG+TGG - chr5_4:20970524-20970543 Msa0843290:CDS 40.0%
AGTCTAATGCAGACAAGTAC+TGG - chr5_4:20969608-20969627 Msa0843290:three_prime_UTR 40.0%
!! ACAAGTACTGGCAAACCATA+AGG - chr5_4:20969620-20969639 Msa0843290:three_prime_UTR 40.0%
!! CAAGTACTGGCAAACCATAA+GGG - chr5_4:20969621-20969640 Msa0843290:three_prime_UTR 40.0%
!! AAAAGCATTGAGGTCCTTGA+GGG - chr5_4:20969685-20969704 Msa0843290:exon 40.0%
TACCTTCAGCATAAGTGAAG+TGG + chr5_4:20969738-20969757 None:intergenic 40.0%
!!! GTAGAGAATGAAGGGCATTT+TGG - chr5_4:20969781-20969800 Msa0843290:CDS 40.0%
AGAGACACTAGGTCATACAT+TGG - chr5_4:20970128-20970147 Msa0843290:intron 40.0%
!! GATTTGGTGGGCTATATTGT+AGG - chr5_4:20970276-20970295 Msa0843290:intron 40.0%
! ATGCTGCTGATGATGAAAAG+AGG - chr5_4:20970334-20970353 Msa0843290:intron 40.0%
GAGAAGGATGTGAGATGAAA+TGG - chr5_4:20970439-20970458 Msa0843290:intron 40.0%
TGCAGTCAAGAACTTCATTG+AGG - chr5_4:20970521-20970540 Msa0843290:intron 40.0%
AGTCAAGAACTTCATTGAGG+TGG - chr5_4:20970524-20970543 Msa0843290:CDS 40.0%
! GCTTTTGTAGTCATGTGGGA+AGG + chr5_4:20969671-20969690 None:intergenic 45.0%
!! CAAAAGCATTGAGGTCCTTG+AGG - chr5_4:20969684-20969703 Msa0843290:exon 45.0%
CTTCAGCATAAGTGAAGTGG+CGG + chr5_4:20969735-20969754 None:intergenic 45.0%
CATGAATCTCTTGGAACGCT+AGG + chr5_4:20970188-20970207 None:intergenic 45.0%
! CATCTTGCTGTAACACCAGT+TGG - chr5_4:20970417-20970436 Msa0843290:intron 45.0%
ATCTCACATCCTTCTCCAAC+TGG + chr5_4:20970435-20970454 None:intergenic 45.0%
! GCTTTTGTAGTCATGTGGGA+AGG + chr5_4:20969671-20969690 None:intergenic 45.0%
!! CAAAAGCATTGAGGTCCTTG+AGG - chr5_4:20969684-20969703 Msa0843290:exon 45.0%
CTTCAGCATAAGTGAAGTGG+CGG + chr5_4:20969735-20969754 None:intergenic 45.0%
CATGAATCTCTTGGAACGCT+AGG + chr5_4:20970188-20970207 None:intergenic 45.0%
! CATCTTGCTGTAACACCAGT+TGG - chr5_4:20970417-20970436 Msa0843290:intron 45.0%
ATCTCACATCCTTCTCCAAC+TGG + chr5_4:20970435-20970454 None:intergenic 45.0%
ATCATGGCTGTAGCTCTTCG+TGG - chr5_4:20969559-20969578 Msa0843290:three_prime_UTR 50.0%
AGCTCTTCGTGGAAAGCTAG+AGG - chr5_4:20969570-20969589 Msa0843290:three_prime_UTR 50.0%
AGTCATGTGGGAAGGCCTTA+GGG + chr5_4:20969663-20969682 None:intergenic 50.0%
TAGTCATGTGGGAAGGCCTT+AGG + chr5_4:20969664-20969683 None:intergenic 50.0%
ATTGAGGTCCTTGAGGGTGA+TGG - chr5_4:20969691-20969710 Msa0843290:exon 50.0%
GAGCTTTACCATCACCCTCA+AGG + chr5_4:20969702-20969721 None:intergenic 50.0%
CGCCACTTCACTTATGCTGA+AGG - chr5_4:20969733-20969752 Msa0843290:CDS 50.0%
ACAACTCGCGAAGTCTTCGA+CGG - chr5_4:20970302-20970321 Msa0843290:intron 50.0%
GCTGTAACACCAGTTGGAGA+AGG - chr5_4:20970423-20970442 Msa0843290:intron 50.0%
ATCATGGCTGTAGCTCTTCG+TGG - chr5_4:20969559-20969578 Msa0843290:three_prime_UTR 50.0%
AGCTCTTCGTGGAAAGCTAG+AGG - chr5_4:20969570-20969589 Msa0843290:three_prime_UTR 50.0%
AGTCATGTGGGAAGGCCTTA+GGG + chr5_4:20969663-20969682 None:intergenic 50.0%
TAGTCATGTGGGAAGGCCTT+AGG + chr5_4:20969664-20969683 None:intergenic 50.0%
ATTGAGGTCCTTGAGGGTGA+TGG - chr5_4:20969691-20969710 Msa0843290:exon 50.0%
GAGCTTTACCATCACCCTCA+AGG + chr5_4:20969702-20969721 None:intergenic 50.0%
CGCCACTTCACTTATGCTGA+AGG - chr5_4:20969733-20969752 Msa0843290:CDS 50.0%
ACAACTCGCGAAGTCTTCGA+CGG - chr5_4:20970302-20970321 Msa0843290:intron 50.0%
GCTGTAACACCAGTTGGAGA+AGG - chr5_4:20970423-20970442 Msa0843290:intron 50.0%
! GAGGGTGATGGTAAAGCTCC+TGG - chr5_4:20969703-20969722 Msa0843290:CDS 55.0%
GAGGGAGAGGTAGAGACACT+AGG - chr5_4:20970117-20970136 Msa0843290:intron 55.0%
AACGCTAGGCACTAGTGCAG+TGG + chr5_4:20970174-20970193 None:intergenic 55.0%
! GAGGGTGATGGTAAAGCTCC+TGG - chr5_4:20969703-20969722 Msa0843290:CDS 55.0%
GAGGGAGAGGTAGAGACACT+AGG - chr5_4:20970117-20970136 Msa0843290:intron 55.0%
AACGCTAGGCACTAGTGCAG+TGG + chr5_4:20970174-20970193 None:intergenic 55.0%
!! GTGAAGTGGCGGATAGAGCC+AGG + chr5_4:20969724-20969743 None:intergenic 60.0%
!! GTGAAGTGGCGGATAGAGCC+AGG + chr5_4:20969724-20969743 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20969474 20970802 20969474 ID=Msa0843290;Name=Msa0843290
chr5_4 mRNA 20969474 20970802 20969474 ID=Msa0843290-mRNA-1;Parent=Msa0843290;Name=Msa0843290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=88|1|1|1|1|1|2|227|156
chr5_4 exon 20969474 20969978 20969474 ID=Msa0843290-mRNA-1:exon:8685;Parent=Msa0843290-mRNA-1
chr5_4 exon 20970522 20970802 20970522 ID=Msa0843290-mRNA-1:exon:8684;Parent=Msa0843290-mRNA-1
chr5_4 five_prime_UTR 20970715 20970802 20970715 ID=Msa0843290-mRNA-1:five_prime_utr;Parent=Msa0843290-mRNA-1
chr5_4 CDS 20970522 20970714 20970522 ID=Msa0843290-mRNA-1:cds;Parent=Msa0843290-mRNA-1
chr5_4 CDS 20969701 20969978 20969701 ID=Msa0843290-mRNA-1:cds;Parent=Msa0843290-mRNA-1
chr5_4 three_prime_UTR 20969474 20969700 20969474 ID=Msa0843290-mRNA-1:three_prime_utr;Parent=Msa0843290-mRNA-1
Gene Sequence

>Msa0843290

ATGGCTGTAGCTCTTCGTGGAAAGCTAGAGGTAGACATTGAACTCAAGTCTAATGCAGACAAGTACTGGCAAACCATAAGGGATTCTACAACTATTTTCCCTAAGGCCTTCCCACATGACTACAAAAGCATTGAGGTCCTTGAGGGTGATGGTAAAGCTCCTGGCTCTATCCGCCACTTCACTTATGCTGAAGGATCACAACTCGCGAAGTCTTCGACGGAGAAGATTGATGCTGCTGATGATGAAAAGAGGACAGCAACCTATTGTATAATTGAAGGGGATCTTCTCCAATACTACAAATCATTCAAGGGACATCTTGCTGTAACACCAGTTGGAGAAGGATGTGAGATGAAATGGTGTGCTGAGTATATTAAAGTTAGTAATGATATTCCTGATCCAACTATTGTCAAAGATTTTGCAGTCAAGAACTTCATTGAGGTGGATGACTATGTTCAATCACTTGCTGCATAG

Protein sequence

>Msa0843290

MAVALRGKLEVDIELKSNADKYWQTIRDSTTIFPKAFPHDYKSIEVLEGDGKAPGSIRHFTYAEGSQLAKSSTEKIDAADDEKRTATYCIIEGDLLQYYKSFKGHLAVTPVGEGCEMKWCAEYIKVSNDIPDPTIVKDFAVKNFIEVDDYVQSLAA*