AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1061180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061180 MtrunA17_Chr7g0238901 91.860 344 13 3 1 344 1 329 0.0 635
Msa1061180 MtrunA17_Chr4g0009941 76.692 266 51 1 79 344 1 255 6.20e-153 429
Msa1061180 MtrunA17_Chr8g0338051 31.140 228 130 8 120 337 108 318 1.23e-22 96.7
Msa1061180 MtrunA17_Chr4g0064601 25.926 270 155 10 84 343 58 292 1.10e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061180 AT2G37660.1 69.231 325 83 4 20 344 18 325 3.64e-158 446
Msa1061180 AT5G02240.1 74.903 259 54 1 86 344 6 253 5.20e-140 397
Msa1061180 AT4G31530.1 33.898 236 128 8 113 337 100 318 1.11e-23 100
Msa1061180 AT4G31530.2 33.790 219 118 7 113 321 100 301 2.49e-21 93.6
Msa1061180 AT2G34460.1 29.818 275 142 13 80 340 40 277 1.65e-15 76.3

Find 89 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCACCAAAGAATATTTA+TGG 0.161293 7_2:+50257296 None:intergenic
TTCACCAACAAAGGACTTTA+AGG 0.161530 7_2:-50253892 Msa1061180:CDS
TTTATTGTTGTTTCTGATTA+TGG 0.163650 7_2:+50257489 None:intergenic
TAACATCATTGTTATTATTA+AGG 0.222978 7_2:+50257404 None:intergenic
TGTTAGTGTAGCACTAAAAT+AGG 0.226572 7_2:+50257525 None:intergenic
AACTACTTTGATGGTTATTA+TGG 0.226847 7_2:-50257374 Msa1061180:exon
TTCTTGTTATTCTACTTCTT+TGG 0.230025 7_2:-50257230 Msa1061180:CDS
CCTTCCAAGTATATGTTTAC+TGG 0.240701 7_2:-50253535 Msa1061180:intron
AGCAAATTTACATTATGTTT+TGG 0.267641 7_2:-50253753 Msa1061180:three_prime_UTR
AAGAGTACTGTGCTTGTTAC+TGG 0.291951 7_2:-50257115 Msa1061180:CDS
TAACCATCCTTTGAACAGTT+TGG 0.300060 7_2:-50254720 Msa1061180:CDS
CAGTTTCTTCTGCATCATTA+AGG 0.304514 7_2:-50257258 Msa1061180:CDS
GAACAATATCTTGCTGATTC+TGG 0.314087 7_2:-50254564 Msa1061180:CDS
TCAATTCAAGGCATTTGATT+TGG 0.316577 7_2:-50253937 Msa1061180:CDS
CCAATGCCATAAATATTCTT+TGG 0.317445 7_2:-50257302 Msa1061180:CDS
GATTGTGTTAGTAGGGTCTA+TGG 0.317597 7_2:-50254756 Msa1061180:CDS
GAGCCTAATAGTACCTGTTC+AGG 0.328614 7_2:+50255176 None:intergenic
AACCATCCTTTGAACAGTTT+GGG 0.329707 7_2:-50254719 Msa1061180:CDS
GTGTACCTTATAATCGTATA+TGG 0.329899 7_2:+50254537 None:intergenic
GAAGAAAGCAAGCAGAAAAT+TGG 0.340025 7_2:-50255371 Msa1061180:CDS
GTATTCCATATACGATTATA+AGG 0.357893 7_2:-50254542 Msa1061180:CDS
TTTGGGTGATGGGAATATAT+TGG 0.358986 7_2:-50254702 Msa1061180:intron
TTTCAAATTAAATTCCTTGC+TGG 0.366516 7_2:-50253451 Msa1061180:three_prime_UTR
TACTGTGTGAACTACTTTGA+TGG 0.375024 7_2:-50257383 Msa1061180:exon
CTTAATGATGCAGAAGAAAC+TGG 0.385666 7_2:+50257259 None:intergenic
GTAAAGCAGATTGTGTTAGT+AGG 0.387562 7_2:-50254764 Msa1061180:CDS
CTTTGAACAGTTTGGGTGAT+GGG 0.397272 7_2:-50254712 Msa1061180:CDS
GGTATCCGAGAACTCGTCAT+AGG 0.398344 7_2:-50254368 Msa1061180:CDS
CCAAAGAATATTTATGGCAT+TGG 0.399375 7_2:+50257302 None:intergenic
CCTTCCCTATGACGAGTTCT+CGG 0.402259 7_2:+50254363 None:intergenic
AAAGCCTTAAAGTCCTTTGT+TGG 0.407444 7_2:+50253888 None:intergenic
GTTAGTGTAGCACTAAAATA+GGG 0.421670 7_2:+50257526 None:intergenic
GTTGGTGAACCTGTTCCCTC+AGG 0.424555 7_2:+50253906 None:intergenic
AGTCTTGTTCCTGCCATTCA+AGG 0.426063 7_2:-50255305 Msa1061180:CDS
CCTTGAGTTGGATCGAATCC+AGG 0.431455 7_2:+50255236 None:intergenic
ATTGTAGGTTTGGAAAAGAA+AGG 0.432611 7_2:-50254589 Msa1061180:intron
TGTTGCAGAAGTCTGTATTC+AGG 0.433542 7_2:-50254294 Msa1061180:intron
GCATCAAAACCTGAGGGAAC+AGG 0.441936 7_2:-50253915 Msa1061180:CDS
ATGATCTAAGATAAGGTAAA+GGG 0.446346 7_2:-50257597 None:intergenic
ACTGGTGCTGCTGGTCGTAC+AGG 0.446496 7_2:-50257097 Msa1061180:intron
TCAGTGGTACTCCACTTGTA+AGG 0.450452 7_2:+50255264 None:intergenic
GAGAGCATCTATACCTTGAA+TGG 0.462991 7_2:+50255292 None:intergenic
TTGTTCAGTGTAATAGAAAC+CGG 0.483014 7_2:+50254515 None:intergenic
AATGGCAGGAACAAGACTTT+CGG 0.485862 7_2:+50255310 None:intergenic
ACATGAACAGCTAAGGCTGC+TGG 0.491366 7_2:-50254788 Msa1061180:intron
CCTTTGAACAGTTTGGGTGA+TGG 0.492670 7_2:-50254713 Msa1061180:CDS
GTGCTTGTTACTGGTGCTGC+TGG 0.493811 7_2:-50257106 Msa1061180:CDS
ATAAATATTCTTTGGTGGCA+AGG 0.501043 7_2:-50257294 Msa1061180:CDS
GCATCTATACCTTGAATGGC+AGG 0.502385 7_2:+50255296 None:intergenic
AGATGGTGCATACCCTGAAC+AGG 0.502612 7_2:-50255189 Msa1061180:intron
CTAAATTGAGTCAGGGCTGG+TGG 0.503589 7_2:-50254410 Msa1061180:intron
AACTGTTCAAAGGATGGTTA+AGG 0.503693 7_2:+50254723 None:intergenic
CCTCTAGCGACGTATTCGTT+TGG 0.508421 7_2:+50255407 None:intergenic
GATGATCTAAGATAAGGTAA+AGG 0.513839 7_2:-50257598 None:intergenic
TCTAGCTATGGTTCTGATGT+CGG 0.517693 7_2:+50254322 None:intergenic
ATGCCATAAATATTCTTTGG+TGG 0.518447 7_2:-50257299 Msa1061180:CDS
ATTGTGTTAGTAGGGTCTAT+GGG 0.532454 7_2:-50254755 Msa1061180:CDS
ATACAGACTTCTGCAACATC+AGG 0.535402 7_2:+50254299 None:intergenic
TTCACACCCTCAAAACTCCT+TGG 0.535434 7_2:+50257193 None:intergenic
GTTTACTAGGTTGACTGGAT+CGG 0.535946 7_2:-50254919 Msa1061180:intron
TAAAGCAGATTGTGTTAGTA+GGG 0.541706 7_2:-50254763 Msa1061180:CDS
CCAAACGAATACGTCGCTAG+AGG 0.542415 7_2:-50255407 Msa1061180:CDS
AGCCTAATAGTACCTGTTCA+GGG 0.567506 7_2:+50255177 None:intergenic
ACCATCTTCAAAATAGAACT+CGG 0.567981 7_2:+50255205 None:intergenic
ATTCCTTGCTGGAAGTGAGT+AGG 0.573871 7_2:-50253440 None:intergenic
ACGTGTGATGATCTAAGATA+AGG 0.575230 7_2:-50257604 None:intergenic
CACCCAAACTGTTCAAAGGA+TGG 0.577560 7_2:+50254717 None:intergenic
TGCAACATCAGGTCTAGCTA+TGG 0.582809 7_2:+50254310 None:intergenic
CCTGGATTCGATCCAACTCA+AGG 0.593139 7_2:-50255236 Msa1061180:CDS
GTATCCGAGAACTCGTCATA+GGG 0.593785 7_2:-50254367 Msa1061180:CDS
GCTCTCATAATCCTTACAAG+TGG 0.596395 7_2:-50255275 Msa1061180:CDS
CCATCACCCAAACTGTTCAA+AGG 0.597247 7_2:+50254713 None:intergenic
TGGTTTCACTTGCATTACCA+AGG 0.600082 7_2:-50257210 Msa1061180:CDS
TGATTTGGCATCAAAACCTG+AGG 0.602928 7_2:-50253922 Msa1061180:CDS
GGGAACAGGTTCACCAACAA+AGG 0.603238 7_2:-50253901 Msa1061180:CDS
GGAGTACCACTGATGAAACC+TGG 0.607060 7_2:-50255254 Msa1061180:CDS
CAAACGAATACGTCGCTAGA+GGG 0.612208 7_2:-50255406 Msa1061180:CDS
CCATCTTCAAAATAGAACTC+GGG 0.615847 7_2:+50255206 None:intergenic
TGGTGGTTTGCAAGACAAAG+AGG 0.615970 7_2:-50254393 Msa1061180:CDS
AATGTGGTAGCAGAAACAAA+AGG 0.616882 7_2:+50257334 None:intergenic
CCGAGAACTCGTCATAGGGA+AGG 0.618903 7_2:-50254363 Msa1061180:CDS
GATTTGGCATCAAAACCTGA+GGG 0.627143 7_2:-50253921 Msa1061180:CDS
TAGTGCTACACTAACATCAG+AGG 0.631377 7_2:-50257518 Msa1061180:five_prime_UTR
GGTGGTTTGCAAGACAAAGA+GGG 0.640822 7_2:-50254392 Msa1061180:CDS
GTGTTAGTAGGGTCTATGGG+TGG 0.647322 7_2:-50254752 Msa1061180:CDS
TCGAATCCAGGTTTCATCAG+TGG 0.648497 7_2:+50255248 None:intergenic
TATACGATTATAAGGTACAC+CGG 0.650582 7_2:-50254534 Msa1061180:CDS
ATGCCTACTCACTTCCAGCA+AGG 0.657179 7_2:+50253437 None:intergenic
GGTTTGCAAGACAAAGAGGG+AGG 0.721811 7_2:-50254389 Msa1061180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTACATCTTAAAATTT+GGG + chr7_2:50254814-50254833 None:intergenic 10.0%
!! TTTATAAAAAATTAAAAGAG+AGG - chr7_2:50255603-50255622 Msa1061180:intron 10.0%
!! TACTAAAATATGAATAAAAA+AGG + chr7_2:50256088-50256107 None:intergenic 10.0%
!!! TAACATCATTGTTATTATTA+AGG + chr7_2:50253632-50253651 None:intergenic 15.0%
!!! AGTAATATGAGTTTTAATTA+AGG - chr7_2:50254111-50254130 Msa1061180:intron 15.0%
!! TCATTTGTTCAAATTATTAT+CGG + chr7_2:50254218-50254237 None:intergenic 15.0%
!! TACATATTCAATATAATGTT+GGG + chr7_2:50254327-50254346 None:intergenic 15.0%
!! TTACATATTCAATATAATGT+TGG + chr7_2:50254328-50254347 None:intergenic 15.0%
!! AATTAAGATTGTTAAAATTG+AGG - chr7_2:50254349-50254368 Msa1061180:CDS 15.0%
!!! TTAAAATTGAGGTTTAATTT+AGG - chr7_2:50254360-50254379 Msa1061180:CDS 15.0%
!!! AAAATTTCTGATTTTTTGTA+TGG - chr7_2:50254457-50254476 Msa1061180:intron 15.0%
!!! AAATTTCTGATTTTTTGTAT+GGG - chr7_2:50254458-50254477 Msa1061180:intron 15.0%
!! ATGATACTATCTTAAAATTT+AGG + chr7_2:50254613-50254632 None:intergenic 15.0%
!! CTATATTACATCTTAAAATT+TGG + chr7_2:50254815-50254834 None:intergenic 15.0%
!!! CAAATTTTAAGATGTAATAT+AGG - chr7_2:50254813-50254832 Msa1061180:intron 15.0%
!!! TTTAGTAATTTTTGTTTACT+AGG - chr7_2:50256101-50256120 Msa1061180:intron 15.0%
!!! TTTATTGTTGTTTCTGATTA+TGG + chr7_2:50253547-50253566 None:intergenic 20.0%
!! AAATATAGGAATATAAATGC+AGG - chr7_2:50254069-50254088 Msa1061180:intron 20.0%
!! AATATAGGAATATAAATGCA+GGG - chr7_2:50254070-50254089 Msa1061180:intron 20.0%
!! TAAAATTAAGATTTCTGACT+TGG - chr7_2:50254403-50254422 Msa1061180:intron 20.0%
!! AAAATTAAGATTTCTGACTT+GGG - chr7_2:50254404-50254423 Msa1061180:intron 20.0%
!! TACTATCTTAAAATTTAGGT+TGG + chr7_2:50254609-50254628 None:intergenic 20.0%
!!! TAAGAAAATGAGTTTTTAAG+TGG - chr7_2:50254737-50254756 Msa1061180:CDS 20.0%
!!! AAGAAAATGAGTTTTTAAGT+GGG - chr7_2:50254738-50254757 Msa1061180:CDS 20.0%
!! CTTCAACTTTATAATATAGA+TGG + chr7_2:50255494-50255513 None:intergenic 20.0%
!! TAAATCAGAAAGTGATAAAA+AGG + chr7_2:50255556-50255575 None:intergenic 20.0%
!! TATAAACTTATAAATTCCTG+CGG - chr7_2:50256201-50256220 Msa1061180:intron 20.0%
!! TAAGCAACAATATAAGAAAA+TGG + chr7_2:50257014-50257033 None:intergenic 20.0%
!! TGTTAAACAAATTGAATCAA+GGG + chr7_2:50257055-50257074 None:intergenic 20.0%
!!! AGCAAATTTACATTATGTTT+TGG - chr7_2:50257280-50257299 Msa1061180:CDS 20.0%
!! AACTACTTTGATGGTTATTA+TGG - chr7_2:50253659-50253678 Msa1061180:intron 25.0%
!!! TTCTTGTTATTCTACTTCTT+TGG - chr7_2:50253803-50253822 Msa1061180:three_prime_UTR 25.0%
! ACTGAAATGTGTGAAAATAT+AGG - chr7_2:50254055-50254074 Msa1061180:intron 25.0%
!! AAATTAAGATTTCTGACTTG+GGG - chr7_2:50254405-50254424 Msa1061180:intron 25.0%
! CATCAAAATGAGTTTATAGT+GGG - chr7_2:50254537-50254556 Msa1061180:CDS 25.0%
!!! TATCTTAAAATTTAGGTTGG+AGG + chr7_2:50254606-50254625 None:intergenic 25.0%
! CAGAAAATTAATGCATATAC+CGG - chr7_2:50254883-50254902 Msa1061180:intron 25.0%
! AGAAAATTAATGCATATACC+GGG - chr7_2:50254884-50254903 Msa1061180:intron 25.0%
! CAATTTAAACCACAACATTA+AGG - chr7_2:50254930-50254949 Msa1061180:intron 25.0%
! ATTTCTTGTTAATGACACAA+TGG - chr7_2:50255047-50255066 Msa1061180:intron 25.0%
! TAGTATACATTTCCAATTAG+AGG + chr7_2:50255157-50255176 None:intergenic 25.0%
!!! GTTTTTGTTTGCAATATAGA+AGG - chr7_2:50255204-50255223 Msa1061180:CDS 25.0%
!! TGATGAAAATTTGTTCAAAC+CGG + chr7_2:50255272-50255291 None:intergenic 25.0%
! ATGAATCATAATCTACCTTT+CGG + chr7_2:50255366-50255385 None:intergenic 25.0%
! AATAATGCTATACTTGTCTT+TGG + chr7_2:50255432-50255451 None:intergenic 25.0%
! TTCTATGATTAATGCAGAAA+AGG + chr7_2:50256176-50256195 None:intergenic 25.0%
! AAAATTAATTTCAATACCGC+AGG + chr7_2:50256220-50256239 None:intergenic 25.0%
! GTATTCCATATACGATTATA+AGG - chr7_2:50256491-50256510 Msa1061180:intron 25.0%
!!! GTATGATTCCTACTTTTATT+TGG - chr7_2:50256546-50256565 Msa1061180:intron 25.0%
! CTGACTCAATTTAGAAAAAT+GGG + chr7_2:50256617-50256636 None:intergenic 25.0%
!! CATTTTTCTAAATTGAGTCA+GGG - chr7_2:50256616-50256635 Msa1061180:intron 25.0%
!!! TACGAAGTTTTGTCAAATAA+TGG + chr7_2:50256866-50256885 None:intergenic 25.0%
! CTATAACAATGTTATATTGC+TGG + chr7_2:50256942-50256961 None:intergenic 25.0%
! CTGTTAAACAAATTGAATCA+AGG + chr7_2:50257056-50257075 None:intergenic 25.0%
!! CTTGATTCAATTTGTTTAAC+AGG - chr7_2:50257054-50257073 Msa1061180:intron 25.0%
!!! AAGCACTAATAGTTGTTTTA+TGG + chr7_2:50257255-50257274 None:intergenic 25.0%
! AACATCTAGATTCATATACT+TGG + chr7_2:50257445-50257464 None:intergenic 25.0%
!! TTATCAGTAGTGTATTTTCT+AGG + chr7_2:50257547-50257566 None:intergenic 25.0%
! TTTCAAATTAAATTCCTTGC+TGG - chr7_2:50257582-50257601 Msa1061180:five_prime_UTR 25.0%
GTTAGTGTAGCACTAAAATA+GGG + chr7_2:50253510-50253529 None:intergenic 30.0%
TGTTAGTGTAGCACTAAAAT+AGG + chr7_2:50253511-50253530 None:intergenic 30.0%
CCAAAGAATATTTATGGCAT+TGG + chr7_2:50253734-50253753 None:intergenic 30.0%
CCAATGCCATAAATATTCTT+TGG - chr7_2:50253731-50253750 Msa1061180:three_prime_UTR 30.0%
ATGCCATAAATATTCTTTGG+TGG - chr7_2:50253734-50253753 Msa1061180:three_prime_UTR 30.0%
TTGCCACCAAAGAATATTTA+TGG + chr7_2:50253740-50253759 None:intergenic 30.0%
! ATAAATATTCTTTGGTGGCA+AGG - chr7_2:50253739-50253758 Msa1061180:three_prime_UTR 30.0%
! AGAGAGAGAGAAAGAATTTT+TGG - chr7_2:50253985-50254004 Msa1061180:intron 30.0%
!! AATTAAGATTTCTGACTTGG+GGG - chr7_2:50254406-50254425 Msa1061180:intron 30.0%
TAAGATTCTCACATGAGATT+AGG - chr7_2:50254514-50254533 Msa1061180:CDS 30.0%
GCATCAAAATGAGTTTATAG+TGG - chr7_2:50254536-50254555 Msa1061180:CDS 30.0%
GTAATTGAATCCTACAAAAC+CGG + chr7_2:50254584-50254603 None:intergenic 30.0%
AAAGTCAGACTCATAAAATC+AGG - chr7_2:50254714-50254733 Msa1061180:CDS 30.0%
!! ACATCTTAAAATTTGGGTTG+AGG + chr7_2:50254808-50254827 None:intergenic 30.0%
TGCTTCCTAAACCAAAAATT+AGG - chr7_2:50254852-50254871 Msa1061180:intron 30.0%
!!! GTAGACCTAATTTTTGGTTT+AGG + chr7_2:50254860-50254879 None:intergenic 30.0%
! CTGTTTGTAGACCTAATTTT+TGG + chr7_2:50254866-50254885 None:intergenic 30.0%
CATCAAAAACCTTAATGTTG+TGG + chr7_2:50254942-50254961 None:intergenic 30.0%
! ATTAAGGTTTTTGATGTCTG+TGG - chr7_2:50254946-50254965 Msa1061180:intron 30.0%
CAGTAAATTTACAGTTACAG+AGG - chr7_2:50255103-50255122 Msa1061180:intron 30.0%
!!! TTTTTAAGTAGCATTCAGAC+CGG - chr7_2:50255250-50255269 Msa1061180:CDS 30.0%
CAAAGGTTGGATCATATAAT+CGG - chr7_2:50255315-50255334 Msa1061180:CDS 30.0%
AAAGGTTGGATCATATAATC+GGG - chr7_2:50255316-50255335 Msa1061180:CDS 30.0%
TGAATCATAATCTACCTTTC+GGG + chr7_2:50255365-50255384 None:intergenic 30.0%
GAAGAAAGATTCATAGATTG+TGG + chr7_2:50255396-50255415 None:intergenic 30.0%
CTTTATAATATAGATGGACC+AGG + chr7_2:50255488-50255507 None:intergenic 30.0%
! TTTAATTGCTGTTACTTCTC+AGG - chr7_2:50255572-50255591 Msa1061180:intron 30.0%
ACCATCTTCAAAATAGAACT+CGG + chr7_2:50255831-50255850 None:intergenic 30.0%
! ATTGTTTTCATAAGTTGTCC+TGG - chr7_2:50255897-50255916 Msa1061180:intron 30.0%
AATAAGCTGAAAACAGCATA+TGG - chr7_2:50255932-50255951 Msa1061180:intron 30.0%
CATATGGGAAATGTATTATG+CGG + chr7_2:50256041-50256060 None:intergenic 30.0%
TCAACTTAAGCATGACATAT+GGG + chr7_2:50256056-50256075 None:intergenic 30.0%
!! TTTTTGTTTACTAGGTTGAC+TGG - chr7_2:50256109-50256128 Msa1061180:intron 30.0%
CAGAAAAATCAAATAGATGC+TGG - chr7_2:50256138-50256157 Msa1061180:intron 30.0%
TTTATCTACATGAACAGCTA+AGG - chr7_2:50256238-50256257 Msa1061180:intron 30.0%
TAAAGCAGATTGTGTTAGTA+GGG - chr7_2:50256270-50256289 Msa1061180:intron 30.0%
TGATGAGAAAAATGCAAGTT+CGG - chr7_2:50256398-50256417 Msa1061180:intron 30.0%
!!! GTTGTTTTCGTATTGATTGT+AGG - chr7_2:50256429-50256448 Msa1061180:intron 30.0%
!! TTTCGTATTGATTGTAGGTT+TGG - chr7_2:50256434-50256453 Msa1061180:intron 30.0%
ATTGTAGGTTTGGAAAAGAA+AGG - chr7_2:50256444-50256463 Msa1061180:intron 30.0%
GTGTACCTTATAATCGTATA+TGG + chr7_2:50256499-50256518 None:intergenic 30.0%
TATACGATTATAAGGTACAC+CGG - chr7_2:50256499-50256518 Msa1061180:intron 30.0%
TTGTTCAGTGTAATAGAAAC+CGG + chr7_2:50256521-50256540 None:intergenic 30.0%
GTTAGATGCCAAATAAAAGT+AGG + chr7_2:50256557-50256576 None:intergenic 30.0%
!! ACTTTTATTTGGCATCTAAC+TGG - chr7_2:50256557-50256576 Msa1061180:intron 30.0%
CCTGACTCAATTTAGAAAAA+TGG + chr7_2:50256618-50256637 None:intergenic 30.0%
!! CCATTTTTCTAAATTGAGTC+AGG - chr7_2:50256615-50256634 Msa1061180:intron 30.0%
!! AAAATGGTGGAATTGTGTTT+TGG + chr7_2:50256998-50257017 None:intergenic 30.0%
GCAACAATATAAGAAAATGG+TGG + chr7_2:50257011-50257030 None:intergenic 30.0%
! TGTTGCTTAACTATGTGATT+TGG - chr7_2:50257025-50257044 Msa1061180:intron 30.0%
! TTAACAGGCACTAAATTTTG+AGG - chr7_2:50257069-50257088 Msa1061180:intron 30.0%
! TCAATTCAAGGCATTTGATT+TGG - chr7_2:50257096-50257115 Msa1061180:intron 30.0%
TTTCTCAAGTTTACAGAACT+GGG + chr7_2:50257348-50257367 None:intergenic 30.0%
TCTAGATTCATATACTTGGA+AGG + chr7_2:50257441-50257460 None:intergenic 30.0%
CAAACCAGTAAACATATACT+TGG + chr7_2:50257505-50257524 None:intergenic 30.0%
TACTGTGTGAACTACTTTGA+TGG - chr7_2:50253650-50253669 Msa1061180:intron 35.0%
AATGTGGTAGCAGAAACAAA+AGG + chr7_2:50253702-50253721 None:intergenic 35.0%
!! GCATTGGTTAGCAAAAAATG+TGG + chr7_2:50253718-50253737 None:intergenic 35.0%
CTTAATGATGCAGAAGAAAC+TGG + chr7_2:50253777-50253796 None:intergenic 35.0%
CAGTTTCTTCTGCATCATTA+AGG - chr7_2:50253775-50253794 Msa1061180:three_prime_UTR 35.0%
! TGTTGTTGTTGTTGTTGCTA+TGG - chr7_2:50253884-50253903 Msa1061180:CDS 35.0%
!! CAGGGTTTTGTAGATTTCAT+TGG - chr7_2:50254088-50254107 Msa1061180:intron 35.0%
TATGGGTTCTATTAGTGACT+TGG - chr7_2:50254475-50254494 Msa1061180:intron 35.0%
! CAAAATGAGTTTATAGTGGG+AGG - chr7_2:50254540-50254559 Msa1061180:CDS 35.0%
! CTATGCAAGGTGATTTTGTA+GGG - chr7_2:50254773-50254792 Msa1061180:CDS 35.0%
! GTTCACATTAGTCTCTCTTT+CGG - chr7_2:50255131-50255150 Msa1061180:intron 35.0%
ACAAAAACCTCTGTATGTGT+AGG + chr7_2:50255192-50255211 None:intergenic 35.0%
! CAAATTTTCATCACATTGCG+AGG - chr7_2:50255279-50255298 Msa1061180:CDS 35.0%
ATCTGTGTAGTTTCAAAGGT+TGG - chr7_2:50255302-50255321 Msa1061180:CDS 35.0%
TTCTTACTAACTTACCCGAA+AGG - chr7_2:50255348-50255367 Msa1061180:CDS 35.0%
GAAGAAAGCAAGCAGAAAAT+TGG - chr7_2:50255662-50255681 Msa1061180:intron 35.0%
!! GCTGCAGATGATGTTTTTAT+TGG - chr7_2:50255686-50255705 Msa1061180:intron 35.0%
CCATCTTCAAAATAGAACTC+GGG + chr7_2:50255830-50255849 None:intergenic 35.0%
AAATGTATTATGCGGCTGTT+TGG + chr7_2:50256033-50256052 None:intergenic 35.0%
GTCAACTTAAGCATGACATA+TGG + chr7_2:50256057-50256076 None:intergenic 35.0%
GTAAAGCAGATTGTGTTAGT+AGG - chr7_2:50256269-50256288 Msa1061180:intron 35.0%
ATTGTGTTAGTAGGGTCTAT+GGG - chr7_2:50256278-50256297 Msa1061180:intron 35.0%
AACTGTTCAAAGGATGGTTA+AGG + chr7_2:50256313-50256332 None:intergenic 35.0%
TAACCATCCTTTGAACAGTT+TGG - chr7_2:50256313-50256332 Msa1061180:intron 35.0%
AACCATCCTTTGAACAGTTT+GGG - chr7_2:50256314-50256333 Msa1061180:intron 35.0%
!! TTTGGGTGATGGGAATATAT+TGG - chr7_2:50256331-50256350 Msa1061180:intron 35.0%
TGTTTCCTTCAACAAAAGTC+TGG - chr7_2:50256368-50256387 Msa1061180:intron 35.0%
! TTGTACCAGACTTTTGTTGA+AGG + chr7_2:50256376-50256395 None:intergenic 35.0%
!! GAACAATATCTTGCTGATTC+TGG - chr7_2:50256469-50256488 Msa1061180:intron 35.0%
! TAGATGCTATTTGACAAACC+TGG - chr7_2:50256959-50256978 Msa1061180:intron 35.0%
TTCACCAACAAAGGACTTTA+AGG - chr7_2:50257141-50257160 Msa1061180:CDS 35.0%
AAAGCCTTAAAGTCCTTTGT+TGG + chr7_2:50257148-50257167 None:intergenic 35.0%
TCAAAAACGAGTAGTGATCT+GGG + chr7_2:50257176-50257195 None:intergenic 35.0%
ATCAAAAACGAGTAGTGATC+TGG + chr7_2:50257177-50257196 None:intergenic 35.0%
GTTTCTCAAGTTTACAGAAC+TGG + chr7_2:50257349-50257368 None:intergenic 35.0%
CCAGTAAACATATACTTGGA+AGG + chr7_2:50257501-50257520 None:intergenic 35.0%
CCTTCCAAGTATATGTTTAC+TGG - chr7_2:50257498-50257517 Msa1061180:five_prime_UTR 35.0%
TAGTGCTACACTAACATCAG+AGG - chr7_2:50253515-50253534 Msa1061180:three_prime_UTR 40.0%
TGGTTTCACTTGCATTACCA+AGG - chr7_2:50253823-50253842 Msa1061180:three_prime_UTR 40.0%
! TGCATTACCAAGGAGTTTTG+AGG - chr7_2:50253833-50253852 Msa1061180:three_prime_UTR 40.0%
!! GCATTACCAAGGAGTTTTGA+GGG - chr7_2:50253834-50253853 Msa1061180:three_prime_UTR 40.0%
!! AAGAGTACTGTGCTTGTTAC+TGG - chr7_2:50253918-50253937 Msa1061180:CDS 40.0%
TGCTACACACCACACAAAAT+CGG + chr7_2:50254278-50254297 None:intergenic 40.0%
TATAATGTTGGGACACTCCT+CGG + chr7_2:50254316-50254335 None:intergenic 40.0%
! TAGATGTTGTCTTCGACTTG+AGG - chr7_2:50254681-50254700 Msa1061180:intron 40.0%
! AGATGTTGTCTTCGACTTGA+GGG - chr7_2:50254682-50254701 Msa1061180:intron 40.0%
AAATCACCTTGCATAGGTAG+AGG + chr7_2:50254769-50254788 None:intergenic 40.0%
CCTACAAAATCACCTTGCAT+AGG + chr7_2:50254775-50254794 None:intergenic 40.0%
! CCTATGCAAGGTGATTTTGT+AGG - chr7_2:50254772-50254791 Msa1061180:CDS 40.0%
!!! CGATACTGTTTTTTCGAACC+CGG + chr7_2:50254905-50254924 None:intergenic 40.0%
CGGGTTCGAAAAAACAGTAT+CGG - chr7_2:50254903-50254922 Msa1061180:CDS 40.0%
GGGTTCGAAAAAACAGTATC+GGG - chr7_2:50254904-50254923 Msa1061180:CDS 40.0%
CTCTGTATGTGTAGGTTCTT+AGG + chr7_2:50255184-50255203 None:intergenic 40.0%
CTAAGAACCTACACATACAG+AGG - chr7_2:50255182-50255201 Msa1061180:intron 40.0%
GAGGATCTGTGTAGTTTCAA+AGG - chr7_2:50255298-50255317 Msa1061180:CDS 40.0%
AATGGCAGGAACAAGACTTT+CGG + chr7_2:50255726-50255745 None:intergenic 40.0%
!! GAGAGCATCTATACCTTGAA+TGG + chr7_2:50255744-50255763 None:intergenic 40.0%
GCTCTCATAATCCTTACAAG+TGG - chr7_2:50255758-50255777 Msa1061180:intron 40.0%
!! CCCGAGTTCTATTTTGAAGA+TGG - chr7_2:50255827-50255846 Msa1061180:intron 40.0%
TACCCTGAACAGGTACTATT+AGG - chr7_2:50255854-50255873 Msa1061180:intron 40.0%
AGCCTAATAGTACCTGTTCA+GGG + chr7_2:50255859-50255878 None:intergenic 40.0%
AGGTACTATTAGGCTCTGTT+TGG - chr7_2:50255864-50255883 Msa1061180:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG + chr7_2:50255918-50255937 None:intergenic 40.0%
AACAGTCACAAGTGCTTATG+TGG - chr7_2:50255988-50256007 Msa1061180:intron 40.0%
! GTTTACTAGGTTGACTGGAT+CGG - chr7_2:50256114-50256133 Msa1061180:intron 40.0%
GATTGTGTTAGTAGGGTCTA+TGG - chr7_2:50256277-50256296 Msa1061180:intron 40.0%
CTTTGAACAGTTTGGGTGAT+GGG - chr7_2:50256321-50256340 Msa1061180:intron 40.0%
TTTCTAAATTGAGTCAGGGC+TGG - chr7_2:50256620-50256639 Msa1061180:intron 40.0%
!! TCTAGCTATGGTTCTGATGT+CGG + chr7_2:50256714-50256733 None:intergenic 40.0%
ATACAGACTTCTGCAACATC+AGG + chr7_2:50256737-50256756 None:intergenic 40.0%
TGTTGCAGAAGTCTGTATTC+AGG - chr7_2:50256739-50256758 Msa1061180:intron 40.0%
TAATTACCGCGATCTACCAT+TGG + chr7_2:50256818-50256837 None:intergenic 40.0%
! GGTAATTAGCGGTTTGTTCA+AGG - chr7_2:50256830-50256849 Msa1061180:intron 40.0%
TTTGGTAGAGATAAAGAGCC+AGG + chr7_2:50256980-50256999 None:intergenic 40.0%
!! ACAGGCACTAAATTTTGAGG+AGG - chr7_2:50257072-50257091 Msa1061180:intron 40.0%
!! TTTTGAGGAGGCTCAATTCA+AGG - chr7_2:50257084-50257103 Msa1061180:intron 40.0%
! TGATTTGGCATCAAAACCTG+AGG - chr7_2:50257111-50257130 Msa1061180:CDS 40.0%
GATTTGGCATCAAAACCTGA+GGG - chr7_2:50257112-50257131 Msa1061180:CDS 40.0%
TTCACACCCTCAAAACTCCT+TGG + chr7_2:50253843-50253862 None:intergenic 45.0%
!!! AGTTTTGAGGGTGTGAAGAG+AGG - chr7_2:50253846-50253865 Msa1061180:exon 45.0%
!!! TGTCGAACACCGATTTTGTG+TGG - chr7_2:50254266-50254285 Msa1061180:intron 45.0%
! TTTTGTGTGGTGTGTAGCAC+AGG - chr7_2:50254279-50254298 Msa1061180:intron 45.0%
TTGAATCCTACAAAACCGGC+TGG + chr7_2:50254580-50254599 None:intergenic 45.0%
GATAGTATCATAGCCTGTCC+AGG - chr7_2:50254622-50254641 Msa1061180:intron 45.0%
TGAATGACTCCCACTATAGC+AGG + chr7_2:50254651-50254670 None:intergenic 45.0%
GAAAGACCTCTACCTATGCA+AGG - chr7_2:50254760-50254779 Msa1061180:CDS 45.0%
CAGTCAAGTGAGACTAATCG+CGG + chr7_2:50254990-50255009 None:intergenic 45.0%
TCTCTCTTTCGGCCTCTAAT+TGG - chr7_2:50255142-50255161 Msa1061180:intron 45.0%
CAAACGAATACGTCGCTAGA+GGG - chr7_2:50255627-50255646 Msa1061180:intron 45.0%
!! AGTCTTGTTCCTGCCATTCA+AGG - chr7_2:50255728-50255747 Msa1061180:intron 45.0%
GCATCTATACCTTGAATGGC+AGG + chr7_2:50255740-50255759 None:intergenic 45.0%
TCAGTGGTACTCCACTTGTA+AGG + chr7_2:50255772-50255791 None:intergenic 45.0%
TCGAATCCAGGTTTCATCAG+TGG + chr7_2:50255788-50255807 None:intergenic 45.0%
! TCGGGTCTTTTTCCTTGAGT+TGG + chr7_2:50255812-50255831 None:intergenic 45.0%
GAGCCTAATAGTACCTGTTC+AGG + chr7_2:50255860-50255879 None:intergenic 45.0%
AAGTTGTCCTGGAGAGCTTA+TGG - chr7_2:50255908-50255927 Msa1061180:intron 45.0%
CACCCAAACTGTTCAAAGGA+TGG + chr7_2:50256319-50256338 None:intergenic 45.0%
CCATCACCCAAACTGTTCAA+AGG + chr7_2:50256323-50256342 None:intergenic 45.0%
CCTTTGAACAGTTTGGGTGA+TGG - chr7_2:50256320-50256339 Msa1061180:intron 45.0%
! TGGTGGTTTGCAAGACAAAG+AGG - chr7_2:50256640-50256659 Msa1061180:intron 45.0%
! GGTGGTTTGCAAGACAAAGA+GGG - chr7_2:50256641-50256660 Msa1061180:intron 45.0%
GTATCCGAGAACTCGTCATA+GGG - chr7_2:50256666-50256685 Msa1061180:intron 45.0%
TGCAACATCAGGTCTAGCTA+TGG + chr7_2:50256726-50256745 None:intergenic 45.0%
TGGTAGATCGCGGTAATTAG+CGG - chr7_2:50256819-50256838 Msa1061180:intron 45.0%
!! ATTATTATATTTATATTTCA+AGG - chr7_2:50255446-50255465 Msa1061180:intron 5.0%
ATCAGTGTCTGTGTCGTGTC+TGG + chr7_2:50254186-50254205 None:intergenic 50.0%
TCCAGGTCACCTGCTATAGT+GGG - chr7_2:50254639-50254658 Msa1061180:intron 50.0%
GACTAATCGCGGTTTGTGGT+GGG + chr7_2:50254979-50254998 None:intergenic 50.0%
AGACTAATCGCGGTTTGTGG+TGG + chr7_2:50254980-50254999 None:intergenic 50.0%
GTGAGACTAATCGCGGTTTG+TGG + chr7_2:50254983-50255002 None:intergenic 50.0%
GGCTCAAAAAGTTCTACGCC+TGG - chr7_2:50255467-50255486 Msa1061180:intron 50.0%
CCTCTAGCGACGTATTCGTT+TGG + chr7_2:50255629-50255648 None:intergenic 50.0%
CCAAACGAATACGTCGCTAG+AGG - chr7_2:50255626-50255645 Msa1061180:intron 50.0%
! GGAGTACCACTGATGAAACC+TGG - chr7_2:50255779-50255798 Msa1061180:intron 50.0%
!! CCTTGAGTTGGATCGAATCC+AGG + chr7_2:50255800-50255819 None:intergenic 50.0%
CCTGGATTCGATCCAACTCA+AGG - chr7_2:50255797-50255816 Msa1061180:intron 50.0%
AGATGGTGCATACCCTGAAC+AGG - chr7_2:50255844-50255863 Msa1061180:intron 50.0%
ACATGAACAGCTAAGGCTGC+TGG - chr7_2:50256245-50256264 Msa1061180:intron 50.0%
GTGTTAGTAGGGTCTATGGG+TGG - chr7_2:50256281-50256300 Msa1061180:intron 50.0%
CTAAATTGAGTCAGGGCTGG+TGG - chr7_2:50256623-50256642 Msa1061180:intron 50.0%
GGTTTGCAAGACAAAGAGGG+AGG - chr7_2:50256644-50256663 Msa1061180:intron 50.0%
GGTATCCGAGAACTCGTCAT+AGG - chr7_2:50256665-50256684 Msa1061180:intron 50.0%
CCTTCCCTATGACGAGTTCT+CGG + chr7_2:50256673-50256692 None:intergenic 50.0%
AGTAAGCTCTCTCCAGCCAA+TGG - chr7_2:50256799-50256818 Msa1061180:intron 50.0%
GCATCAAAACCTGAGGGAAC+AGG - chr7_2:50257118-50257137 Msa1061180:CDS 50.0%
GGGAACAGGTTCACCAACAA+AGG - chr7_2:50257132-50257151 Msa1061180:CDS 50.0%
!! GTGCTTGTTACTGGTGCTGC+TGG - chr7_2:50253927-50253946 Msa1061180:CDS 55.0%
TGCTGCTGGTCGTACAGGTT+TGG - chr7_2:50253941-50253960 Msa1061180:CDS 55.0%
GTTGGGACACTCCTCGGATT+AGG + chr7_2:50254310-50254329 None:intergenic 55.0%
GAATCTCTCGCTCTACCAGC+CGG - chr7_2:50254562-50254581 Msa1061180:CDS 55.0%
!! GCTCTACCAGCCGGTTTTGT+AGG - chr7_2:50254571-50254590 Msa1061180:CDS 55.0%
CTATAGCAGGTGACCTGGAC+AGG + chr7_2:50254638-50254657 None:intergenic 55.0%
GTCCAGGTCACCTGCTATAG+TGG - chr7_2:50254638-50254657 Msa1061180:intron 55.0%
TCCCACTATAGCAGGTGACC+TGG + chr7_2:50254643-50254662 None:intergenic 55.0%
CCGAGAACTCGTCATAGGGA+AGG - chr7_2:50256670-50256689 Msa1061180:intron 55.0%
CTCCAGCCAATGGTAGATCG+CGG - chr7_2:50256809-50256828 Msa1061180:intron 55.0%
TACCGCGATCTACCATTGGC+TGG + chr7_2:50256814-50256833 None:intergenic 55.0%
! GTTGGTGAACCTGTTCCCTC+AGG + chr7_2:50257130-50257149 None:intergenic 55.0%
!! ACTGGTGCTGCTGGTCGTAC+AGG - chr7_2:50253936-50253955 Msa1061180:CDS 60.0%
CACAGGACACGCCTAATCCG+AGG - chr7_2:50254296-50254315 Msa1061180:CDS 60.0%
!! CGCGGTTTGTGGTGGGCTTG+TGG + chr7_2:50254972-50254991 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 50253441 50257614 50253441 ID=Msa1061180;Name=Msa1061180
chr7_2 mRNA 50253441 50257614 50253441 ID=Msa1061180-mRNA-1;Parent=Msa1061180;Name=Msa1061180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=228|0.85|0.87|1|0.85|0.75|8|241|344
chr7_2 exon 50253441 50253548 50253441 ID=Msa1061180-mRNA-1:exon:9097;Parent=Msa1061180-mRNA-1
chr7_2 exon 50253727 50253979 50253727 ID=Msa1061180-mRNA-1:exon:9096;Parent=Msa1061180-mRNA-1
chr7_2 exon 50254295 50254418 50254295 ID=Msa1061180-mRNA-1:exon:9095;Parent=Msa1061180-mRNA-1
chr7_2 exon 50254510 50254604 50254510 ID=Msa1061180-mRNA-1:exon:9094;Parent=Msa1061180-mRNA-1
chr7_2 exon 50254703 50254800 50254703 ID=Msa1061180-mRNA-1:exon:9093;Parent=Msa1061180-mRNA-1
chr7_2 exon 50254896 50254932 50254896 ID=Msa1061180-mRNA-1:exon:9092;Parent=Msa1061180-mRNA-1
chr7_2 exon 50255190 50255461 50255190 ID=Msa1061180-mRNA-1:exon:9091;Parent=Msa1061180-mRNA-1
chr7_2 exon 50257098 50257614 50257098 ID=Msa1061180-mRNA-1:exon:9090;Parent=Msa1061180-mRNA-1
chr7_2 five_prime_UTR 50257387 50257614 50257387 ID=Msa1061180-mRNA-1:five_prime_utr;Parent=Msa1061180-mRNA-1
chr7_2 CDS 50257098 50257386 50257098 ID=Msa1061180-mRNA-1:cds;Parent=Msa1061180-mRNA-1
chr7_2 CDS 50255190 50255461 50255190 ID=Msa1061180-mRNA-1:cds;Parent=Msa1061180-mRNA-1
chr7_2 CDS 50254896 50254932 50254896 ID=Msa1061180-mRNA-1:cds;Parent=Msa1061180-mRNA-1
chr7_2 CDS 50254703 50254800 50254703 ID=Msa1061180-mRNA-1:cds;Parent=Msa1061180-mRNA-1
chr7_2 CDS 50254510 50254604 50254510 ID=Msa1061180-mRNA-1:cds;Parent=Msa1061180-mRNA-1
chr7_2 CDS 50254295 50254418 50254295 ID=Msa1061180-mRNA-1:cds;Parent=Msa1061180-mRNA-1
chr7_2 CDS 50253860 50253979 50253860 ID=Msa1061180-mRNA-1:cds;Parent=Msa1061180-mRNA-1
chr7_2 three_prime_UTR 50253727 50253859 50253727 ID=Msa1061180-mRNA-1:three_prime_utr;Parent=Msa1061180-mRNA-1
chr7_2 three_prime_UTR 50253441 50253548 50253441 ID=Msa1061180-mRNA-1:three_prime_utr;Parent=Msa1061180-mRNA-1
Gene Sequence

>Msa1061180

ATGGTTATTATGGCTACTAATACACGTGTTCCTTTTGTTTCTGCTACCACATTTTTTGCTAACCAATGCCATAAATATTCTTTGGTGGCAAGGACAGTTCATGTACCAGTTTCTTCTGCATCATTAAGGCTTTCTTCTTGTTATTCTACTTCTTTGGTTTCACTTGCATTACCAAGGAGTTTTGAGGGTGTGAAGAGAGGTGCAAATAGAAGAAGTGTTGTTGTTGTTGTTGCTATGGCTGAGAATTCAAAGAGTACTGTGCTTGTTACTGGTGCTGCTGGTCGTACAGGTCAAATAGTTTATAAAAAATTAAAAGAGAGGCCAAACGAATACGTCGCTAGAGGGCTAGTTAGATCAGAAGAAAGCAAGCAGAAAATTGGTGCTGCAGATGATGTTTTTATTGGTGATATAAGAGATACCGAAAGTCTTGTTCCTGCCATTCAAGGTATAGATGCTCTCATAATCCTTACAAGTGGAGTACCACTGATGAAACCTGGATTCGATCCAACTCAAGGAAAAAGACCCGAGTTCTATTTTGAAGATGGTGCATACCCTGAACAGGTTGACTGGATCGGACAGAAAAATCAAATAGATGCTGCTAAGGCTGCTGGAGTAAAGCAGATTGTGTTAGTAGGGTCTATGGGTGGAACAGACCTTAACCATCCTTTGAACAGTTTGGGTGATGGGAATATATTGGTTTGGAAAAGAAAGGCTGAACAATATCTTGCTGATTCTGGTATTCCATATACGATTATAAGGTACACCGGTTTCTATTACACTGAACAACATCTGGCTGGTGGTTTGCAAGACAAAGAGGGAGGTATCCGAGAACTCGTCATAGGGAAGGATGATGAGCTTCTAAAGACCGACATCAGAACCATAGCTAGACCTGATGTTGCAGAAGTCTGTATTCAGGCACTAAATTTTGAGGAGGCTCAATTCAAGGCATTTGATTTGGCATCAAAACCTGAGGGAACAGGTTCACCAACAAAGGACTTTAAGGCTTTATTTTCCCAGATCACTACTCGTTTTTGA

Protein sequence

>Msa1061180

MVIMATNTRVPFVSATTFFANQCHKYSLVARTVHVPVSSASLRLSSCYSTSLVSLALPRSFEGVKRGANRRSVVVVVAMAENSKSTVLVTGAAGRTGQIVYKKLKERPNEYVARGLVRSEESKQKIGAADDVFIGDIRDTESLVPAIQGIDALIILTSGVPLMKPGFDPTQGKRPEFYFEDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTDLNHPLNSLGDGNILVWKRKAEQYLADSGIPYTIIRYTGFYYTEQHLAGGLQDKEGGIRELVIGKDDELLKTDIRTIARPDVAEVCIQALNFEEAQFKAFDLASKPEGTGSPTKDFKALFSQITTRF*