AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538570 MtrunA17_Chr4g0013261 87.850 107 12 1 1 107 1 106 1.05e-61 184
Msa0538570 MtrunA17_Chr4g0013251 77.570 107 23 1 1 107 1 106 1.35e-54 166
Msa0538570 MtrunA17_Chr4g0012951 69.159 107 31 1 1 107 1 105 9.03e-46 143
Msa0538570 MtrunA17_Chr4g0013001 65.421 107 35 1 1 107 1 105 4.81e-43 136
Msa0538570 MtrunA17_Chr4g0012991 65.421 107 35 1 1 107 56 160 2.25e-42 136
Msa0538570 MtrunA17_Chr4g0012961 63.551 107 37 1 1 107 1 105 5.29e-42 134
Msa0538570 MtrunA17_Chr4g0013211 48.598 107 53 2 1 107 1 105 8.59e-26 92.8
Msa0538570 MtrunA17_Chr2g0309241 41.667 108 59 3 1 107 1 105 1.04e-22 85.1
Msa0538570 MtrunA17_Chr4g0012891 49.038 104 45 4 11 107 14 116 1.06e-21 82.8
Msa0538570 MtrunA17_Chr7g0244641 36.937 111 64 2 4 108 1 111 2.80e-20 79.0
Msa0538570 MtrunA17_Chr7g0244691 40.909 110 58 3 4 107 1 109 6.66e-20 78.2
Msa0538570 MtrunA17_Chr7g0244671 34.545 110 66 2 4 107 1 110 4.97e-19 76.6
Msa0538570 MtrunA17_Chr4g0012901 38.889 108 64 2 1 107 5 111 5.73e-19 75.9
Msa0538570 MtrunA17_Chr7g0244831 43.396 106 55 4 4 107 7 109 1.42e-18 74.7
Msa0538570 MtrunA17_Chr7g0244841 41.837 98 54 3 11 107 13 108 3.06e-18 73.9
Msa0538570 MtrunA17_Chr4g0012921 37.037 108 67 1 1 107 1 108 7.77e-17 70.1
Msa0538570 MtrunA17_Chr7g0244811 37.500 104 61 2 1 102 5 106 1.13e-16 70.1
Msa0538570 MtrunA17_Chr3g0107481 32.039 103 69 1 5 107 3 104 2.47e-16 68.9
Msa0538570 MtrunA17_Chr3g0095931 33.333 99 62 3 12 107 15 112 2.12e-15 66.6
Msa0538570 MtrunA17_Chr4g0012931 33.636 110 68 3 1 107 1 108 2.27e-14 64.3
Msa0538570 MtrunA17_Chr7g0244741 37.615 109 65 1 2 107 3 111 3.21e-14 63.5
Msa0538570 MtrunA17_Chr7g0244721 33.333 108 70 1 2 107 3 110 1.31e-13 62.0
Msa0538570 MtrunA17_Chr7g0233431 31.313 99 67 1 10 107 23 121 1.81e-13 62.0
Msa0538570 MtrunA17_Chr3g0104951 32.407 108 67 4 4 106 7 113 2.56e-13 61.2
Msa0538570 MtrunA17_Chr3g0104931 32.407 108 67 4 4 106 7 113 2.56e-13 61.2
Msa0538570 MtrunA17_Chr3g0104941 32.407 108 67 4 4 106 7 113 2.56e-13 61.2
Msa0538570 MtrunA17_Chr7g0244821 35.514 107 67 2 2 107 3 108 3.40e-13 61.2
Msa0538570 MtrunA17_Chr3g0105001 31.481 108 68 4 4 106 7 113 5.61e-13 60.5
Msa0538570 MtrunA17_Chr3g0104921 33.654 104 63 4 8 106 1 103 9.04e-13 59.7
Msa0538570 MtrunA17_Chr3g0104911 33.654 104 63 4 8 106 1 103 9.04e-13 59.7
Msa0538570 MtrunA17_Chr3g0105021 36.905 84 48 3 27 106 31 113 9.83e-13 59.7
Msa0538570 MtrunA17_Chr3g0105011 36.905 84 48 3 27 106 31 113 9.83e-13 59.7
Msa0538570 MtrunA17_Chr3g0104981 36.905 84 48 3 27 106 31 113 1.08e-12 59.7
Msa0538570 MtrunA17_Chr3g0105041 32.407 108 67 4 4 106 7 113 1.09e-12 59.7
Msa0538570 MtrunA17_Chr3g0104971 31.481 108 68 4 4 106 7 113 1.11e-12 59.7
Msa0538570 MtrunA17_Chr3g0095991 30.556 108 69 4 4 106 7 113 1.40e-12 59.3
Msa0538570 MtrunA17_Chr3g0104901 32.075 106 66 4 6 106 9 113 1.74e-12 59.3
Msa0538570 MtrunA17_Chr3g0104991 36.905 84 48 3 27 106 31 113 2.42e-12 58.9
Msa0538570 MtrunA17_Chr3g0095951 30.556 108 69 4 4 106 7 113 3.68e-12 58.2
Msa0538570 MtrunA17_Chr1g0165761 36.364 110 63 3 4 107 1 109 3.88e-12 58.2
Msa0538570 MtrunA17_Chr7g0244681 35.514 107 68 1 2 107 3 109 3.92e-12 58.2
Msa0538570 MtrunA17_Chr3g0096021 30.556 108 69 4 4 106 7 113 4.76e-12 58.2
Msa0538570 MtrunA17_Chr3g0105031 35.714 84 49 3 27 106 21 103 6.83e-12 57.4
Msa0538570 MtrunA17_Chr3g0101431 31.858 113 69 5 1 106 1 112 9.26e-12 57.4
Msa0538570 MtrunA17_Chr3g0096031 30.556 108 69 4 4 106 7 113 9.98e-12 57.0
Msa0538570 MtrunA17_Chr3g0104961 35.714 84 49 3 27 106 31 113 1.65e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538570 AT5G59320.1 45.098 102 55 1 8 109 7 107 1.05e-23 88.2
Msa0538570 AT3G51590.1 43.564 101 54 1 12 109 8 108 4.87e-22 84.0
Msa0538570 AT5G59310.1 45.000 100 51 2 8 107 7 102 8.85e-22 83.2
Msa0538570 AT3G51600.1 48.980 98 47 3 12 107 12 108 1.83e-19 77.4
Msa0538570 AT2G38540.1 46.226 106 53 4 4 107 5 108 6.51e-19 75.9
Msa0538570 AT4G33355.2 43.158 95 50 1 13 103 11 105 1.07e-18 75.5
Msa0538570 AT4G33355.1 43.158 95 50 1 13 103 11 105 1.11e-18 75.5
Msa0538570 AT2G38530.1 43.810 105 57 2 4 107 5 108 5.95e-18 73.6
Msa0538570 AT2G15050.3 41.346 104 55 4 12 109 11 114 1.09e-17 72.8
Msa0538570 AT2G15050.1 41.346 104 55 4 12 109 11 114 1.42e-17 72.8
Msa0538570 AT5G01870.1 41.121 107 58 4 4 107 2 106 1.66e-17 72.4
Msa0538570 AT2G15050.2 39.216 102 58 3 12 109 11 112 2.28e-17 72.0
Msa0538570 AT2G18370.1 37.647 85 51 2 23 106 22 105 3.01e-14 63.9
Msa0538570 AT3G08770.1 40.230 87 48 3 24 107 18 103 7.26e-14 62.8
Msa0538570 AT3G08770.2 40.230 87 48 3 24 107 18 103 8.87e-14 62.8

Find 46 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCAACAACTATAAATAT+AGG 0.321379 4_1:+18016902 None:intergenic
CTTGCGGGCGGGGCCGTTGT+TGG 0.344393 4_1:+18018162 None:intergenic
GCAGTTGCAAGCAGTCTTGC+GGG 0.361401 4_1:+18018147 None:intergenic
GCACTATAGCTGTAGAATAA+AGG 0.369849 4_1:-18017101 Msa0538570:three_prime_UTR
TGCAAGCAGTCTTGCGGGCG+GGG 0.373033 4_1:+18018152 None:intergenic
CCATGCATTACTTATCTTCA+AGG 0.382464 4_1:-18018241 Msa0538570:CDS
TACATGTGCAACAACCAAAC+TGG 0.389230 4_1:+18016990 None:intergenic
GAGCAACAACTATAAATATA+GGG 0.399826 4_1:+18016903 None:intergenic
TTGCAAGCAGTCTTGCGGGC+GGG 0.409587 4_1:+18018151 None:intergenic
ACTTATCTTCAAGGTGGTGC+TGG 0.410647 4_1:-18018232 Msa0538570:CDS
GTGACTGCTGCCTCTGCCAT+TGG 0.435322 4_1:+18018292 None:intergenic
GATAAGTAATGCATGGAGTA+AGG 0.447792 4_1:+18018248 None:intergenic
GCGGGCGGGGCCGTTGTTGG+CGG 0.458612 4_1:+18018165 None:intergenic
TGCAATTATGTGCATGGTGG+TGG 0.466945 4_1:-18018323 Msa0538570:CDS
AACTGCTTGAAAAGTGCTGC+TGG 0.487551 4_1:-18018130 Msa0538570:CDS
ATGTTAACACCACATTTGCC+AGG 0.490963 4_1:+18018067 None:intergenic
GCTGCTCTCCCTGGCAAATG+TGG 0.495611 4_1:-18018076 Msa0538570:CDS
AGCAGTTGCAAGCAGTCTTG+CGG 0.506600 4_1:+18018146 None:intergenic
GTTGTTATTCAAACGAGCAA+TGG 0.508618 4_1:+18018105 None:intergenic
AACCAAGCTGCTGCTCTCCC+TGG 0.514408 4_1:-18018085 Msa0538570:CDS
GGTGGAGTGAGGAGACTTAA+CGG 0.519956 4_1:-18018190 Msa0538570:CDS
TGCCAGGGAGAGCAGCAGCT+TGG 0.525683 4_1:+18018083 None:intergenic
CAAGAGGAAACTCGCAGAAG+TGG 0.528500 4_1:+18017062 None:intergenic
TACAATTGTTAAATGTAGCA+TGG 0.533974 4_1:+18016941 None:intergenic
AGAGAAAGAAGAAGATAGCA+TGG 0.537528 4_1:-18017150 Msa0538570:three_prime_UTR
TTTGGCTGCAATTATGTGCA+TGG 0.538143 4_1:-18018329 Msa0538570:CDS
ACAACCAAACTGGAAAGAAA+AGG 0.538385 4_1:+18017000 None:intergenic
GGTCCATCTGCAGCATGCTG+TGG 0.539612 4_1:-18018211 Msa0538570:CDS
GTTGCAAGCAGTCTTGCGGG+CGG 0.541246 4_1:+18018150 None:intergenic
TTATTCTACAGCTATAGTGC+TGG 0.541332 4_1:+18017104 None:intergenic
CCATCTGCAGCATGCTGTGG+TGG 0.550747 4_1:-18018208 Msa0538570:CDS
GTAGAAGTGCTAAACTTGTA+GGG 0.551668 4_1:+18018043 None:intergenic
GTCACATGTGGACAAGTAGT+AGG 0.553840 4_1:-18018274 Msa0538570:CDS
GAATAAAGGAAGAGCAATGA+GGG 0.557023 4_1:-18017087 Msa0538570:three_prime_UTR
GGTTACTGCACCAATGGCAG+AGG 0.568355 4_1:-18018302 Msa0538570:CDS
CCACCACAGCATGCTGCAGA+TGG 0.580113 4_1:+18018208 None:intergenic
GGTGGTGGTTACTGCACCAA+TGG 0.601083 4_1:-18018308 Msa0538570:CDS
CTTAACGGTGCCGCCAACAA+CGG 0.605014 4_1:-18018175 Msa0538570:CDS
CCTTGAAGATAAGTAATGCA+TGG 0.607580 4_1:+18018241 None:intergenic
AATTATAAGTCTGAAACAAG+AGG 0.611485 4_1:+18017046 None:intergenic
GCAGAGGCAGCAGTCACATG+TGG 0.630368 4_1:-18018286 Msa0538570:CDS
AGAATAAAGGAAGAGCAATG+AGG 0.632653 4_1:-18017088 Msa0538570:three_prime_UTR
TGTTAACACCACATTTGCCA+GGG 0.642773 4_1:+18018068 None:intergenic
CAGCATGCTGTGGTGGAGTG+AGG 0.648040 4_1:-18018201 Msa0538570:CDS
TGCATTACTTATCTTCAAGG+TGG 0.657751 4_1:-18018238 Msa0538570:CDS
GGCTGCAATTATGTGCATGG+TGG 0.657959 4_1:-18018326 Msa0538570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACACAAATATATATATATA+GGG + chr4_1:18017381-18017400 None:intergenic 10.0%
!! ATACACAAATATATATATAT+AGG + chr4_1:18017382-18017401 None:intergenic 10.0%
!! TACACAAATATATATATATA+GGG + chr4_1:18017381-18017400 None:intergenic 10.0%
!! ATACACAAATATATATATAT+AGG + chr4_1:18017382-18017401 None:intergenic 10.0%
!! ACAAAAAAAACTATTTACAA+TGG - chr4_1:18017541-18017560 Msa0538570:intron 15.0%
!! TTTATATGGTATAAAATAAG+TGG - chr4_1:18017751-18017770 Msa0538570:intron 15.0%
!! ACAAAAAAAACTATTTACAA+TGG - chr4_1:18017541-18017560 Msa0538570:intron 15.0%
!! TTTATATGGTATAAAATAAG+TGG - chr4_1:18017751-18017770 Msa0538570:intron 15.0%
!! ATTTCTCATATACGTAATTA+AGG + chr4_1:18017204-18017223 None:intergenic 20.0%
!! GGCATATTTAATAAGTTATT+TGG + chr4_1:18017504-18017523 None:intergenic 20.0%
!! TGAGACATTAAAATGATAAT+TGG - chr4_1:18017658-18017677 Msa0538570:intron 20.0%
!! TATACGTGTATAATTGTATT+AGG - chr4_1:18017715-18017734 Msa0538570:intron 20.0%
!! GTATCAAAACAAAGTTTATA+TGG - chr4_1:18017737-18017756 Msa0538570:intron 20.0%
!! ATTTCTCATATACGTAATTA+AGG + chr4_1:18017204-18017223 None:intergenic 20.0%
!! GGCATATTTAATAAGTTATT+TGG + chr4_1:18017504-18017523 None:intergenic 20.0%
!! TGAGACATTAAAATGATAAT+TGG - chr4_1:18017658-18017677 Msa0538570:intron 20.0%
!! TATACGTGTATAATTGTATT+AGG - chr4_1:18017715-18017734 Msa0538570:intron 20.0%
!! GTATCAAAACAAAGTTTATA+TGG - chr4_1:18017737-18017756 Msa0538570:intron 20.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr4_1:18017234-18017253 Msa0538570:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr4_1:18017345-18017364 Msa0538570:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr4_1:18017346-18017365 Msa0538570:intron 25.0%
! ATATGCCTAAAAAAATGAAG+TGG - chr4_1:18017517-18017536 Msa0538570:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr4_1:18017525-18017544 None:intergenic 25.0%
! GACATTAAAATGATAATTGG+AGG - chr4_1:18017661-18017680 Msa0538570:intron 25.0%
! ATTAAAATGATAATTGGAGG+AGG - chr4_1:18017664-18017683 Msa0538570:intron 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr4_1:18018147-18018166 None:intergenic 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr4_1:18018252-18018271 None:intergenic 25.0%
! GAGCAACAACTATAAATATA+GGG + chr4_1:18018290-18018309 None:intergenic 25.0%
! TGAGCAACAACTATAAATAT+AGG + chr4_1:18018291-18018310 None:intergenic 25.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr4_1:18017234-18017253 Msa0538570:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr4_1:18017345-18017364 Msa0538570:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr4_1:18017346-18017365 Msa0538570:intron 25.0%
! ATATGCCTAAAAAAATGAAG+TGG - chr4_1:18017517-18017536 Msa0538570:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr4_1:18017525-18017544 None:intergenic 25.0%
! GACATTAAAATGATAATTGG+AGG - chr4_1:18017661-18017680 Msa0538570:intron 25.0%
! ATTAAAATGATAATTGGAGG+AGG - chr4_1:18017664-18017683 Msa0538570:intron 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr4_1:18018147-18018166 None:intergenic 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr4_1:18018252-18018271 None:intergenic 25.0%
! GAGCAACAACTATAAATATA+GGG + chr4_1:18018290-18018309 None:intergenic 25.0%
! TGAGCAACAACTATAAATAT+AGG + chr4_1:18018291-18018310 None:intergenic 25.0%
CTCATATACGTAATTAAGGA+GGG + chr4_1:18017200-18017219 None:intergenic 30.0%
TCTCATATACGTAATTAAGG+AGG + chr4_1:18017201-18017220 None:intergenic 30.0%
!! TACCTGAAGAAGTTTTATGT+AGG - chr4_1:18017449-18017468 Msa0538570:intron 30.0%
! GTCTCACAATCACTTAATTT+TGG + chr4_1:18017644-18017663 None:intergenic 30.0%
! TATGAGTGACTTTGCATTTT+TGG - chr4_1:18017782-18017801 Msa0538570:intron 30.0%
! ATGAGTGACTTTGCATTTTT+GGG - chr4_1:18017783-18017802 Msa0538570:intron 30.0%
ACTATCTATATGCTCATGAA+GGG + chr4_1:18017915-18017934 None:intergenic 30.0%
! TTTTCCTTTTCTTTCCAGTT+TGG - chr4_1:18018186-18018205 Msa0538570:CDS 30.0%
CTCATATACGTAATTAAGGA+GGG + chr4_1:18017200-18017219 None:intergenic 30.0%
TCTCATATACGTAATTAAGG+AGG + chr4_1:18017201-18017220 None:intergenic 30.0%
!! TACCTGAAGAAGTTTTATGT+AGG - chr4_1:18017449-18017468 Msa0538570:intron 30.0%
! GTCTCACAATCACTTAATTT+TGG + chr4_1:18017644-18017663 None:intergenic 30.0%
! TATGAGTGACTTTGCATTTT+TGG - chr4_1:18017782-18017801 Msa0538570:intron 30.0%
! ATGAGTGACTTTGCATTTTT+GGG - chr4_1:18017783-18017802 Msa0538570:intron 30.0%
ACTATCTATATGCTCATGAA+GGG + chr4_1:18017915-18017934 None:intergenic 30.0%
! TTTTCCTTTTCTTTCCAGTT+TGG - chr4_1:18018186-18018205 Msa0538570:CDS 30.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr4_1:18016843-18016862 Msa0538570:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr4_1:18016945-18016964 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_1:18016952-18016971 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_1:18016949-18016968 Msa0538570:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr4_1:18016952-18016971 Msa0538570:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_1:18017088-18017107 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr4_1:18017150-18017169 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr4_1:18017151-18017170 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr4_1:18017160-18017179 Msa0538570:three_prime_UTR 35.0%
CTCCTACATAAAACTTCTTC+AGG + chr4_1:18017454-18017473 None:intergenic 35.0%
!! CTGAAGAAGTTTTATGTAGG+AGG - chr4_1:18017452-18017471 Msa0538570:intron 35.0%
!! TTGGTCATCATCTTTTAGCT+TGG + chr4_1:18017625-18017644 None:intergenic 35.0%
!! TTTTTGGGCAGTCATCAAAA+TGG - chr4_1:18017798-18017817 Msa0538570:intron 35.0%
CACTATCTATATGCTCATGA+AGG + chr4_1:18017916-18017935 None:intergenic 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr4_1:18018040-18018059 Msa0538570:intron 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr4_1:18018089-18018108 None:intergenic 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr4_1:18018089-18018108 Msa0538570:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr4_1:18018102-18018121 Msa0538570:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr4_1:18018103-18018122 Msa0538570:CDS 35.0%
ACAACCAAACTGGAAAGAAA+AGG + chr4_1:18018193-18018212 None:intergenic 35.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr4_1:18016843-18016862 Msa0538570:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr4_1:18016945-18016964 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_1:18016952-18016971 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_1:18016949-18016968 Msa0538570:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr4_1:18016952-18016971 Msa0538570:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_1:18017088-18017107 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr4_1:18017150-18017169 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr4_1:18017151-18017170 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr4_1:18017160-18017179 Msa0538570:three_prime_UTR 35.0%
CTCCTACATAAAACTTCTTC+AGG + chr4_1:18017454-18017473 None:intergenic 35.0%
!! CTGAAGAAGTTTTATGTAGG+AGG - chr4_1:18017452-18017471 Msa0538570:intron 35.0%
!! TTGGTCATCATCTTTTAGCT+TGG + chr4_1:18017625-18017644 None:intergenic 35.0%
!! TTTTTGGGCAGTCATCAAAA+TGG - chr4_1:18017798-18017817 Msa0538570:intron 35.0%
CACTATCTATATGCTCATGA+AGG + chr4_1:18017916-18017935 None:intergenic 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr4_1:18018040-18018059 Msa0538570:intron 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr4_1:18018089-18018108 None:intergenic 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr4_1:18018089-18018108 Msa0538570:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr4_1:18018102-18018121 Msa0538570:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr4_1:18018103-18018122 Msa0538570:CDS 35.0%
ACAACCAAACTGGAAAGAAA+AGG + chr4_1:18018193-18018212 None:intergenic 35.0%
TTTGGCTGCAATTATGTGCA+TGG - chr4_1:18016861-18016880 Msa0538570:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr4_1:18017125-18017144 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr4_1:18017126-18017145 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr4_1:18017248-18017267 Msa0538570:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr4_1:18017363-18017382 None:intergenic 40.0%
!!! GTCATCATCTTTTAGCTTGG+AGG + chr4_1:18017622-18017641 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr4_1:18017995-18018014 Msa0538570:intron 40.0%
TACATGTGCAACAACCAAAC+TGG + chr4_1:18018203-18018222 None:intergenic 40.0%
TTTGGCTGCAATTATGTGCA+TGG - chr4_1:18016861-18016880 Msa0538570:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr4_1:18017125-18017144 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr4_1:18017126-18017145 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr4_1:18017248-18017267 Msa0538570:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr4_1:18017363-18017382 None:intergenic 40.0%
!!! GTCATCATCTTTTAGCTTGG+AGG + chr4_1:18017622-18017641 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr4_1:18017995-18018014 Msa0538570:intron 40.0%
TACATGTGCAACAACCAAAC+TGG + chr4_1:18018203-18018222 None:intergenic 40.0%
TGCAATTATGTGCATGGTGG+TGG - chr4_1:18016867-18016886 Msa0538570:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr4_1:18016916-18016935 Msa0538570:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr4_1:18016958-18016977 Msa0538570:three_prime_UTR 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_1:18017060-18017079 Msa0538570:three_prime_UTR 45.0%
TGCAATTATGTGCATGGTGG+TGG - chr4_1:18016867-18016886 Msa0538570:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr4_1:18016916-18016935 Msa0538570:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr4_1:18016958-18016977 Msa0538570:three_prime_UTR 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_1:18017060-18017079 Msa0538570:three_prime_UTR 45.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr4_1:18018342-18018361 Msa0538570:CDS 5.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr4_1:18018342-18018361 Msa0538570:CDS 5.0%
GGCTGCAATTATGTGCATGG+TGG - chr4_1:18016864-18016883 Msa0538570:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr4_1:18017000-18017019 Msa0538570:three_prime_UTR 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr4_1:18017047-18017066 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr4_1:18018131-18018150 None:intergenic 50.0%
GGCTGCAATTATGTGCATGG+TGG - chr4_1:18016864-18016883 Msa0538570:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr4_1:18017000-18017019 Msa0538570:three_prime_UTR 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr4_1:18017047-18017066 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr4_1:18018131-18018150 None:intergenic 50.0%
! GGTGGTGGTTACTGCACCAA+TGG - chr4_1:18016882-18016901 Msa0538570:three_prime_UTR 55.0%
GGTTACTGCACCAATGGCAG+AGG - chr4_1:18016888-18016907 Msa0538570:three_prime_UTR 55.0%
!! CTTAACGGTGCCGCCAACAA+CGG - chr4_1:18017015-18017034 Msa0538570:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr4_1:18017046-18017065 None:intergenic 55.0%
! GGTGGTGGTTACTGCACCAA+TGG - chr4_1:18016882-18016901 Msa0538570:three_prime_UTR 55.0%
GGTTACTGCACCAATGGCAG+AGG - chr4_1:18016888-18016907 Msa0538570:three_prime_UTR 55.0%
!! CTTAACGGTGCCGCCAACAA+CGG - chr4_1:18017015-18017034 Msa0538570:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr4_1:18017046-18017065 None:intergenic 55.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr4_1:18016901-18016920 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr4_1:18016904-18016923 Msa0538570:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr4_1:18016979-18016998 Msa0538570:three_prime_UTR 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr4_1:18016985-18017004 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr4_1:18016982-18017001 Msa0538570:three_prime_UTR 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr4_1:18016989-18017008 Msa0538570:three_prime_UTR 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr4_1:18017042-18017061 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr4_1:18017043-18017062 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_1:18017105-18017124 Msa0538570:three_prime_UTR 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_1:18017114-18017133 Msa0538570:three_prime_UTR 60.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr4_1:18016901-18016920 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr4_1:18016904-18016923 Msa0538570:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr4_1:18016979-18016998 Msa0538570:three_prime_UTR 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr4_1:18016985-18017004 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr4_1:18016982-18017001 Msa0538570:three_prime_UTR 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr4_1:18016989-18017008 Msa0538570:three_prime_UTR 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr4_1:18017042-18017061 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr4_1:18017043-18017062 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_1:18017105-18017124 Msa0538570:three_prime_UTR 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_1:18017114-18017133 Msa0538570:three_prime_UTR 60.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr4_1:18017041-18017060 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_1:18017110-18017129 None:intergenic 65.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr4_1:18017041-18017060 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_1:18017110-18017129 None:intergenic 65.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr4_1:18017031-18017050 None:intergenic 75.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr4_1:18017031-18017050 None:intergenic 75.0%
! GCGGGCGGGGCCGTTGTTGG+CGG + chr4_1:18017028-18017047 None:intergenic 80.0%
! GCGGGCGGGGCCGTTGTTGG+CGG + chr4_1:18017028-18017047 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 18016838 18018374 18016838 ID=Msa0538570;Name=Msa0538570
chr4_1 mRNA 18016838 18018374 18016838 ID=Msa0538570-mRNA-1;Parent=Msa0538570;Name=Msa0538570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0.5|1|1|1|2|351|109
chr4_1 exon 18016838 18017201 18016838 ID=Msa0538570-mRNA-1:exon:5354;Parent=Msa0538570-mRNA-1
chr4_1 exon 18018058 18018374 18018058 ID=Msa0538570-mRNA-1:exon:5353;Parent=Msa0538570-mRNA-1
chr4_1 CDS 18018058 18018374 18018058 ID=Msa0538570-mRNA-1:cds;Parent=Msa0538570-mRNA-1
chr4_1 CDS 18017189 18017201 18017189 ID=Msa0538570-mRNA-1:cds;Parent=Msa0538570-mRNA-1
chr4_1 three_prime_UTR 18016838 18017188 18016838 ID=Msa0538570-mRNA-1:three_prime_utr;Parent=Msa0538570-mRNA-1
Gene Sequence

>Msa0538570

ATGGCAAGCATGAGAGTTGCATTTTTGGCTGCAATTATGTGCATGGTGGTGGTTACTGCACCAATGGCAGAGGCAGCAGTCACATGTGGACAAGTAGTAGGTTTCCTTACTCCATGCATTACTTATCTTCAAGGTGGTGCTGGTCCATCTGCAGCATGCTGTGGTGGAGTGAGGAGACTTAACGGTGCCGCCAACAACGGCCCCGCCCGCAAGACTGCTTGCAACTGCTTGAAAAGTGCTGCTGGTTCCATTGCTCGTTTGAATAACAACCAAGCTGCTGCTCTCCCTGGCAAATGTGGTGTTAACATTCCCTACAACATCAGGTTCTAA

Protein sequence

>Msa0538570

MASMRVAFLAAIMCMVVVTAPMAEAAVTCGQVVGFLTPCITYLQGGAGPSAACCGGVRRLNGAANNGPARKTACNCLKSAAGSIARLNNNQAAALPGKCGVNIPYNIRF*