AlfalfaGEDB | Msa1041200

M. sativa cultivar zhongmu-4 / Msa1041200

KEGG: -
GO: GO:0000302 GO:0001101 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010150 GO:0022622 GO:0031347 GO:0031668 GO:0032101 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042631 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048366 GO:0048367 GO:0048580 GO:0048583 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080134 GO:0090693 GO:0097305 GO:0099402 GO:0104004 GO:1900055 GO:1900150 GO:1900424 GO:1901700 GO:1901701 GO:1902074 GO:2000024 GO:2000026 GO:2000028 GO:2000241
PFAM: PF03242.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041200	GAU11234.1	83.505	97	11	1	1	92	1	97	3.87e-51	166

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041200	sp\|P32292\|ARG2_VIGRR	55.446	101	34	4	1	92	1	99	3.47e-28	100

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041200	A0A2K3LCK8	83.505	97	11	1	1	92	1	97	2.18e-51	166

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa1041200	0.811769	5.931288e-51	-8.615850e-47
Msa0190250	Msa1041200	0.805777	1.133250e-49	-8.615850e-47
Msa1041200	Msa1165720	0.808036	3.772485e-50	-8.615850e-47
Msa1041200	Msa1190520	0.823089	1.671290e-53	-8.615850e-47
Msa1041200	Msa1277440	0.806233	9.085897e-50	-8.615850e-47
Msa1041200	Msa1325290	0.803102	4.092456e-49	-8.615850e-47
Msa1041200	Msa1366580	0.904521	1.124740e-79	-8.615850e-47
Msa1041200	Msa1448630	0.803211	3.885014e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041200	MtrunA17_Chr7g0269421	83.838	99	9	1	1	92	1	99	2.74e-52	158
Msa1041200	MtrunA17_Chr1g0195391	54.839	93	39	3	1	92	1	91	7.84e-25	89.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041200	AT4G02380.1	44.898	98	43	3	1	89	1	96	2.38e-17	70.5
Msa1041200	AT1G02820.1	47.826	92	43	3	1	89	1	90	2.43e-17	70.5
Msa1041200	AT4G02380.3	44.898	98	43	3	1	89	96	191	2.23e-16	70.5

Find 54 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTATATTATATTATGTATTT+TGG	0.081551	7_1:-78782744	Msa1041200:three_prime_UTR
ACTCTTTCATTCATTCTTTC+GGG	0.201868	7_1:-78783307	Msa1041200:five_prime_UTR
AACTCTTTCATTCATTCTTT+CGG	0.219672	7_1:-78783308	Msa1041200:five_prime_UTR
CGGTGGATCTCATGAGCTTT+TGG	0.249055	7_1:-78782707	Msa1041200:three_prime_UTR
CATTCATTCTTTCGGGCTTA+AGG	0.288947	7_1:-78783300	Msa1041200:five_prime_UTR
AGATGGTGCTTCGACTTATA+AGG	0.290073	7_1:-78782901	Msa1041200:CDS
TACATCTTACACTATTAGTA+TGG	0.328608	7_1:-78783176	Msa1041200:exon
TTCTCTGCTATTGTCCTTGA+AGG	0.342980	7_1:-78783127	Msa1041200:CDS
CTTCGACTTATAAGGTTTCA+TGG	0.345319	7_1:-78782893	Msa1041200:CDS
AAGATGGGACCCACAAAATC+AGG	0.353277	7_1:-78782927	Msa1041200:CDS
CTATAAGCCTGAGAATATTA+AGG	0.363636	7_1:-78782847	Msa1041200:CDS
GAATTGTTTGTGAGAGGAAT+AGG	0.388357	7_1:+78783339	None:intergenic
TAGTAACCAGTGACGGGATC+TGG	0.403824	7_1:+78782867	None:intergenic
AAGATGTATTAAATGAACTA+TGG	0.405251	7_1:+78783191	None:intergenic
TCAACAAAGTTGTCATCAAA+TGG	0.417779	7_1:+78782423	None:intergenic
TCAGTATCCTTAATATTCTC+AGG	0.439065	7_1:+78782840	None:intergenic
TCGTTCTTTCGCTAACGCTA+AGG	0.475487	7_1:-78783152	Msa1041200:CDS
ACGTGGTTACGCTGCGGCAA+GGG	0.477009	7_1:-78782973	Msa1041200:CDS
CCCACAAAATCAGGGGAAGA+TGG	0.498300	7_1:-78782918	Msa1041200:CDS
GCAATTAACAGAATCAATCA+AGG	0.501493	7_1:+78782658	None:intergenic
CGCTGCGGCAAGGGGAGGAG+TGG	0.505897	7_1:-78782964	Msa1041200:CDS
AAAATTGAATTGTTTGTGAG+AGG	0.509614	7_1:+78783333	None:intergenic
TTGCGAAGATCCTACTCTGT+TGG	0.512688	7_1:-78782639	Msa1041200:three_prime_UTR
TGGGTTCCAGATCCCGTCAC+TGG	0.514530	7_1:-78782873	Msa1041200:CDS
TTCGACTTATAAGGTTTCAT+GGG	0.523405	7_1:-78782892	Msa1041200:CDS
GAGTGTTGGAGAATCCTTCA+AGG	0.545395	7_1:+78783113	None:intergenic
AGGGGAGGAGTGGTGTCTGT+TGG	0.549168	7_1:-78782954	Msa1041200:CDS
GAAGATCCTACTCTGTTGGT+TGG	0.557582	7_1:-78782635	Msa1041200:three_prime_UTR
GACGTGGTTACGCTGCGGCA+AGG	0.563935	7_1:-78782974	Msa1041200:CDS
ACGGTACCTTGTGAGAGTGT+TGG	0.566085	7_1:+78783099	None:intergenic
GTGGAGGACTATATATAATG+TGG	0.566119	7_1:+78783365	None:intergenic
AGATGGGACCCACAAAATCA+GGG	0.576868	7_1:-78782926	Msa1041200:CDS
TCATTCTTTCGGGCTTAAGG+TGG	0.577395	7_1:-78783297	Msa1041200:five_prime_UTR
CGTGGTTACGCTGCGGCAAG+GGG	0.578056	7_1:-78782972	Msa1041200:CDS
TGAGAGGAATAGGTGAGTGG+AGG	0.581220	7_1:+78783349	None:intergenic
GGCTTATAGTAACCAGTGAC+GGG	0.583700	7_1:+78782861	None:intergenic
TGGGTTTGTTATTTAAACGG+TGG	0.588214	7_1:-78782724	Msa1041200:three_prime_UTR
TATAATGTGGAGAAAAGAGA+GGG	0.590762	7_1:+78783378	None:intergenic
AGGCTTATAGTAACCAGTGA+CGG	0.594196	7_1:+78782860	None:intergenic
GGTGTCTGTTGGCAACAAGA+TGG	0.594809	7_1:-78782943	Msa1041200:CDS
GTTGCTGATCATAAGTGTAA+TGG	0.599895	7_1:-78782555	Msa1041200:three_prime_UTR
GGTTACGCTGCGGCAAGGGG+AGG	0.607716	7_1:-78782969	Msa1041200:CDS
GTGTCTGTTGGCAACAAGAT+GGG	0.610680	7_1:-78782942	Msa1041200:CDS
TTGTGAGAGGAATAGGTGAG+TGG	0.618295	7_1:+78783346	None:intergenic
GGAGAAAAGAGAGGGCAAAG+AGG	0.637158	7_1:+78783386	None:intergenic
AATGAACCAACCAACAGAGT+AGG	0.638709	7_1:+78782629	None:intergenic
ATATAATGTGGAGAAAAGAG+AGG	0.652732	7_1:+78783377	None:intergenic
CATAACGATAGTTTAAACTG+TGG	0.657037	7_1:-78783265	Msa1041200:five_prime_UTR
AAGCTTAGCACGTAAATCAG+CGG	0.682540	7_1:+78782815	None:intergenic
GATTCTCCAACACTCTCACA+AGG	0.700768	7_1:-78783105	Msa1041200:intron
GATGGGACCCACAAAATCAG+GGG	0.703081	7_1:-78782925	Msa1041200:CDS
TGATCATAAGTGTAATGGTG+TGG	0.712483	7_1:-78782550	Msa1041200:three_prime_UTR
CTAACAAAGTAAATAAACAG+AGG	0.722024	7_1:+78782606	None:intergenic
AAACAGACGTGGTTACGCTG+CGG	0.738749	7_1:-78782979	Msa1041200:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTATTTTTAATTAATAAT+TGG	-	chr7_1:78783322-78783341	Msa1041200:five_prime_UTR	0.0%
!!!	TTTTATTTTTAATTAATAAT+TGG	-	chr7_1:78783322-78783341	Msa1041200:five_prime_UTR	0.0%
!!!	TTTTAATTAATAATTGGTTT+AGG	-	chr7_1:78783328-78783347	Msa1041200:five_prime_UTR	10.0%
!!!	TTTTAATTAATAATTGGTTT+AGG	-	chr7_1:78783328-78783347	Msa1041200:five_prime_UTR	10.0%
!!!	TTATTTACTTTGTTAGTTTT+TGG	-	chr7_1:78783221-78783240	Msa1041200:five_prime_UTR	15.0%
!!!	TATTTACTTTGTTAGTTTTT+GGG	-	chr7_1:78783222-78783241	Msa1041200:five_prime_UTR	15.0%
!!!	TTATTTACTTTGTTAGTTTT+TGG	-	chr7_1:78783221-78783240	Msa1041200:five_prime_UTR	15.0%
!!!	TATTTACTTTGTTAGTTTTT+GGG	-	chr7_1:78783222-78783241	Msa1041200:five_prime_UTR	15.0%
!!	AAGATGTATTAAATGAACTA+TGG	+	chr7_1:78782632-78782651	None:intergenic	20.0%
!!	AATAACAATTAGAAACGTTA+CGG	+	chr7_1:78782743-78782762	None:intergenic	20.0%
!!!	ATATCTGAGATTTTAACATA+TGG	-	chr7_1:78782803-78782822	Msa1041200:CDS	20.0%
!!	TTAAAATAATTAAACAGACG+TGG	-	chr7_1:78782830-78782849	Msa1041200:CDS	20.0%
!!!	ATTAGTTGTTGAATTTTTTG+CGG	+	chr7_1:78783033-78783052	None:intergenic	20.0%
!!!	TTTTGGGTTTGTTATTTAAA+CGG	-	chr7_1:78783093-78783112	Msa1041200:intron	20.0%
!!	AAGATGTATTAAATGAACTA+TGG	+	chr7_1:78782632-78782651	None:intergenic	20.0%
!!	AATAACAATTAGAAACGTTA+CGG	+	chr7_1:78782743-78782762	None:intergenic	20.0%
!!!	ATATCTGAGATTTTAACATA+TGG	-	chr7_1:78782803-78782822	Msa1041200:CDS	20.0%
!!	TTAAAATAATTAAACAGACG+TGG	-	chr7_1:78782830-78782849	Msa1041200:CDS	20.0%
!!!	ATTAGTTGTTGAATTTTTTG+CGG	+	chr7_1:78783033-78783052	None:intergenic	20.0%
!!!	TTTTGGGTTTGTTATTTAAA+CGG	-	chr7_1:78783093-78783112	Msa1041200:intron	20.0%
!	AAAATTGAATTGTTTGTGAG+AGG	+	chr7_1:78782490-78782509	None:intergenic	25.0%
!	AACTCTTTCATTCATTCTTT+CGG	-	chr7_1:78782512-78782531	Msa1041200:three_prime_UTR	25.0%
!	TACATCTTACACTATTAGTA+TGG	-	chr7_1:78782644-78782663	Msa1041200:three_prime_UTR	25.0%
!	CTAACAAAGTAAATAAACAG+AGG	+	chr7_1:78783217-78783236	None:intergenic	25.0%
!	AAAATTGAATTGTTTGTGAG+AGG	+	chr7_1:78782490-78782509	None:intergenic	25.0%
!	AACTCTTTCATTCATTCTTT+CGG	-	chr7_1:78782512-78782531	Msa1041200:three_prime_UTR	25.0%
!	TACATCTTACACTATTAGTA+TGG	-	chr7_1:78782644-78782663	Msa1041200:three_prime_UTR	25.0%
!	CTAACAAAGTAAATAAACAG+AGG	+	chr7_1:78783217-78783236	None:intergenic	25.0%
	TATAATGTGGAGAAAAGAGA+GGG	+	chr7_1:78782445-78782464	None:intergenic	30.0%
	ATATAATGTGGAGAAAAGAG+AGG	+	chr7_1:78782446-78782465	None:intergenic	30.0%
	ACTCTTTCATTCATTCTTTC+GGG	-	chr7_1:78782513-78782532	Msa1041200:three_prime_UTR	30.0%
	CATAACGATAGTTTAAACTG+TGG	-	chr7_1:78782555-78782574	Msa1041200:three_prime_UTR	30.0%
	TTCGACTTATAAGGTTTCAT+GGG	-	chr7_1:78782928-78782947	Msa1041200:CDS	30.0%
	CTATAAGCCTGAGAATATTA+AGG	-	chr7_1:78782973-78782992	Msa1041200:CDS	30.0%
	TCAGTATCCTTAATATTCTC+AGG	+	chr7_1:78782983-78783002	None:intergenic	30.0%
	GCAATTAACAGAATCAATCA+AGG	+	chr7_1:78783165-78783184	None:intergenic	30.0%
!!	GCAACTAATCATCATTTTTC+TGG	+	chr7_1:78783250-78783269	None:intergenic	30.0%
	TATAATGTGGAGAAAAGAGA+GGG	+	chr7_1:78782445-78782464	None:intergenic	30.0%
	ATATAATGTGGAGAAAAGAG+AGG	+	chr7_1:78782446-78782465	None:intergenic	30.0%
	ACTCTTTCATTCATTCTTTC+GGG	-	chr7_1:78782513-78782532	Msa1041200:three_prime_UTR	30.0%
	CATAACGATAGTTTAAACTG+TGG	-	chr7_1:78782555-78782574	Msa1041200:three_prime_UTR	30.0%
	TTCGACTTATAAGGTTTCAT+GGG	-	chr7_1:78782928-78782947	Msa1041200:CDS	30.0%
	CTATAAGCCTGAGAATATTA+AGG	-	chr7_1:78782973-78782992	Msa1041200:CDS	30.0%
	TCAGTATCCTTAATATTCTC+AGG	+	chr7_1:78782983-78783002	None:intergenic	30.0%
	GCAATTAACAGAATCAATCA+AGG	+	chr7_1:78783165-78783184	None:intergenic	30.0%
!!	GCAACTAATCATCATTTTTC+TGG	+	chr7_1:78783250-78783269	None:intergenic	30.0%
	GTGGAGGACTATATATAATG+TGG	+	chr7_1:78782458-78782477	None:intergenic	35.0%
	GAATTGTTTGTGAGAGGAAT+AGG	+	chr7_1:78782484-78782503	None:intergenic	35.0%
	CTTCGACTTATAAGGTTTCA+TGG	-	chr7_1:78782927-78782946	Msa1041200:CDS	35.0%
!!	TGGGTTTGTTATTTAAACGG+TGG	-	chr7_1:78783096-78783115	Msa1041200:intron	35.0%
!!!	CTTTTGGGATCGATTTTAGA+TGG	-	chr7_1:78783129-78783148	Msa1041200:CDS	35.0%
	GTTGCTGATCATAAGTGTAA+TGG	-	chr7_1:78783265-78783284	Msa1041200:five_prime_UTR	35.0%
	TGATCATAAGTGTAATGGTG+TGG	-	chr7_1:78783270-78783289	Msa1041200:five_prime_UTR	35.0%
!	CATCCATTTGATGACAACTT+TGG	-	chr7_1:78783394-78783413	Msa1041200:five_prime_UTR	35.0%
	GTGGAGGACTATATATAATG+TGG	+	chr7_1:78782458-78782477	None:intergenic	35.0%
	GAATTGTTTGTGAGAGGAAT+AGG	+	chr7_1:78782484-78782503	None:intergenic	35.0%
	CTTCGACTTATAAGGTTTCA+TGG	-	chr7_1:78782927-78782946	Msa1041200:CDS	35.0%
!!	TGGGTTTGTTATTTAAACGG+TGG	-	chr7_1:78783096-78783115	Msa1041200:intron	35.0%
!!!	CTTTTGGGATCGATTTTAGA+TGG	-	chr7_1:78783129-78783148	Msa1041200:CDS	35.0%
	GTTGCTGATCATAAGTGTAA+TGG	-	chr7_1:78783265-78783284	Msa1041200:five_prime_UTR	35.0%
	TGATCATAAGTGTAATGGTG+TGG	-	chr7_1:78783270-78783289	Msa1041200:five_prime_UTR	35.0%
	CATTCATTCTTTCGGGCTTA+AGG	-	chr7_1:78782520-78782539	Msa1041200:three_prime_UTR	40.0%
	TTCTCTGCTATTGTCCTTGA+AGG	-	chr7_1:78782693-78782712	Msa1041200:three_prime_UTR	40.0%
	AGATGGTGCTTCGACTTATA+AGG	-	chr7_1:78782919-78782938	Msa1041200:CDS	40.0%
	AGGCTTATAGTAACCAGTGA+CGG	+	chr7_1:78782963-78782982	None:intergenic	40.0%
	AAGCTTAGCACGTAAATCAG+CGG	+	chr7_1:78783008-78783027	None:intergenic	40.0%
	AATGAACCAACCAACAGAGT+AGG	+	chr7_1:78783194-78783213	None:intergenic	40.0%
	CATTCATTCTTTCGGGCTTA+AGG	-	chr7_1:78782520-78782539	Msa1041200:three_prime_UTR	40.0%
	TTCTCTGCTATTGTCCTTGA+AGG	-	chr7_1:78782693-78782712	Msa1041200:three_prime_UTR	40.0%
	AGATGGTGCTTCGACTTATA+AGG	-	chr7_1:78782919-78782938	Msa1041200:CDS	40.0%
	AGGCTTATAGTAACCAGTGA+CGG	+	chr7_1:78782963-78782982	None:intergenic	40.0%
	AAGCTTAGCACGTAAATCAG+CGG	+	chr7_1:78783008-78783027	None:intergenic	40.0%
	AATGAACCAACCAACAGAGT+AGG	+	chr7_1:78783194-78783213	None:intergenic	40.0%
	TTGTGAGAGGAATAGGTGAG+TGG	+	chr7_1:78782477-78782496	None:intergenic	45.0%
	TCATTCTTTCGGGCTTAAGG+TGG	-	chr7_1:78782523-78782542	Msa1041200:three_prime_UTR	45.0%
	TCGTTCTTTCGCTAACGCTA+AGG	-	chr7_1:78782668-78782687	Msa1041200:three_prime_UTR	45.0%
!!	GAGTGTTGGAGAATCCTTCA+AGG	+	chr7_1:78782710-78782729	None:intergenic	45.0%
	GATTCTCCAACACTCTCACA+AGG	-	chr7_1:78782715-78782734	Msa1041200:three_prime_UTR	45.0%
	GTGTCTGTTGGCAACAAGAT+GGG	-	chr7_1:78782878-78782897	Msa1041200:CDS	45.0%
	AAGATGGGACCCACAAAATC+AGG	-	chr7_1:78782893-78782912	Msa1041200:CDS	45.0%
	AGATGGGACCCACAAAATCA+GGG	-	chr7_1:78782894-78782913	Msa1041200:CDS	45.0%
!	CCATCTTCCCCTGATTTTGT+GGG	+	chr7_1:78782905-78782924	None:intergenic	45.0%
!	ACCATCTTCCCCTGATTTTG+TGG	+	chr7_1:78782906-78782925	None:intergenic	45.0%
	GGCTTATAGTAACCAGTGAC+GGG	+	chr7_1:78782962-78782981	None:intergenic	45.0%
!	GGTGGATCTCATGAGCTTTT+GGG	-	chr7_1:78783114-78783133	Msa1041200:CDS	45.0%
	TTGCGAAGATCCTACTCTGT+TGG	-	chr7_1:78783181-78783200	Msa1041200:five_prime_UTR	45.0%
	GAAGATCCTACTCTGTTGGT+TGG	-	chr7_1:78783185-78783204	Msa1041200:five_prime_UTR	45.0%
	TTGTGAGAGGAATAGGTGAG+TGG	+	chr7_1:78782477-78782496	None:intergenic	45.0%
	TCATTCTTTCGGGCTTAAGG+TGG	-	chr7_1:78782523-78782542	Msa1041200:three_prime_UTR	45.0%
	TCGTTCTTTCGCTAACGCTA+AGG	-	chr7_1:78782668-78782687	Msa1041200:three_prime_UTR	45.0%
!!	GAGTGTTGGAGAATCCTTCA+AGG	+	chr7_1:78782710-78782729	None:intergenic	45.0%
	GATTCTCCAACACTCTCACA+AGG	-	chr7_1:78782715-78782734	Msa1041200:three_prime_UTR	45.0%
	GTGTCTGTTGGCAACAAGAT+GGG	-	chr7_1:78782878-78782897	Msa1041200:CDS	45.0%
	AAGATGGGACCCACAAAATC+AGG	-	chr7_1:78782893-78782912	Msa1041200:CDS	45.0%
	AGATGGGACCCACAAAATCA+GGG	-	chr7_1:78782894-78782913	Msa1041200:CDS	45.0%
!	CCATCTTCCCCTGATTTTGT+GGG	+	chr7_1:78782905-78782924	None:intergenic	45.0%
!	ACCATCTTCCCCTGATTTTG+TGG	+	chr7_1:78782906-78782925	None:intergenic	45.0%
	GGCTTATAGTAACCAGTGAC+GGG	+	chr7_1:78782962-78782981	None:intergenic	45.0%
!	GGTGGATCTCATGAGCTTTT+GGG	-	chr7_1:78783114-78783133	Msa1041200:CDS	45.0%
	TTGCGAAGATCCTACTCTGT+TGG	-	chr7_1:78783181-78783200	Msa1041200:five_prime_UTR	45.0%
	GAAGATCCTACTCTGTTGGT+TGG	-	chr7_1:78783185-78783204	Msa1041200:five_prime_UTR	45.0%
!!!	TTATATTATATTATGTATTT+TGG	-	chr7_1:78783076-78783095	Msa1041200:intron	5.0%
!!!	TATATTATATTATGTATTTT+GGG	-	chr7_1:78783077-78783096	Msa1041200:intron	5.0%
!!!	TTATATTATATTATGTATTT+TGG	-	chr7_1:78783076-78783095	Msa1041200:intron	5.0%
!!!	TATATTATATTATGTATTTT+GGG	-	chr7_1:78783077-78783096	Msa1041200:intron	5.0%
	GGAGAAAAGAGAGGGCAAAG+AGG	+	chr7_1:78782437-78782456	None:intergenic	50.0%
	TGAGAGGAATAGGTGAGTGG+AGG	+	chr7_1:78782474-78782493	None:intergenic	50.0%
!	ACGGTACCTTGTGAGAGTGT+TGG	+	chr7_1:78782724-78782743	None:intergenic	50.0%
	AAACAGACGTGGTTACGCTG+CGG	-	chr7_1:78782841-78782860	Msa1041200:CDS	50.0%
	GGTGTCTGTTGGCAACAAGA+TGG	-	chr7_1:78782877-78782896	Msa1041200:CDS	50.0%
	GATGGGACCCACAAAATCAG+GGG	-	chr7_1:78782895-78782914	Msa1041200:CDS	50.0%
	CCCACAAAATCAGGGGAAGA+TGG	-	chr7_1:78782902-78782921	Msa1041200:CDS	50.0%
!	TAGTAACCAGTGACGGGATC+TGG	+	chr7_1:78782956-78782975	None:intergenic	50.0%
!	CGGTGGATCTCATGAGCTTT+TGG	-	chr7_1:78783113-78783132	Msa1041200:CDS	50.0%
	GGAGAAAAGAGAGGGCAAAG+AGG	+	chr7_1:78782437-78782456	None:intergenic	50.0%
	TGAGAGGAATAGGTGAGTGG+AGG	+	chr7_1:78782474-78782493	None:intergenic	50.0%
!	ACGGTACCTTGTGAGAGTGT+TGG	+	chr7_1:78782724-78782743	None:intergenic	50.0%
	AAACAGACGTGGTTACGCTG+CGG	-	chr7_1:78782841-78782860	Msa1041200:CDS	50.0%
	GGTGTCTGTTGGCAACAAGA+TGG	-	chr7_1:78782877-78782896	Msa1041200:CDS	50.0%
	GATGGGACCCACAAAATCAG+GGG	-	chr7_1:78782895-78782914	Msa1041200:CDS	50.0%
	CCCACAAAATCAGGGGAAGA+TGG	-	chr7_1:78782902-78782921	Msa1041200:CDS	50.0%
!	TAGTAACCAGTGACGGGATC+TGG	+	chr7_1:78782956-78782975	None:intergenic	50.0%
!	CGGTGGATCTCATGAGCTTT+TGG	-	chr7_1:78783113-78783132	Msa1041200:CDS	50.0%
	ACGTGGTTACGCTGCGGCAA+GGG	-	chr7_1:78782847-78782866	Msa1041200:CDS	60.0%
	AGGGGAGGAGTGGTGTCTGT+TGG	-	chr7_1:78782866-78782885	Msa1041200:CDS	60.0%
	TGGGTTCCAGATCCCGTCAC+TGG	-	chr7_1:78782947-78782966	Msa1041200:CDS	60.0%
	ACGTGGTTACGCTGCGGCAA+GGG	-	chr7_1:78782847-78782866	Msa1041200:CDS	60.0%
	AGGGGAGGAGTGGTGTCTGT+TGG	-	chr7_1:78782866-78782885	Msa1041200:CDS	60.0%
	TGGGTTCCAGATCCCGTCAC+TGG	-	chr7_1:78782947-78782966	Msa1041200:CDS	60.0%
	GACGTGGTTACGCTGCGGCA+AGG	-	chr7_1:78782846-78782865	Msa1041200:CDS	65.0%
	CGTGGTTACGCTGCGGCAAG+GGG	-	chr7_1:78782848-78782867	Msa1041200:CDS	65.0%
	GACGTGGTTACGCTGCGGCA+AGG	-	chr7_1:78782846-78782865	Msa1041200:CDS	65.0%
	CGTGGTTACGCTGCGGCAAG+GGG	-	chr7_1:78782848-78782867	Msa1041200:CDS	65.0%
	GGTTACGCTGCGGCAAGGGG+AGG	-	chr7_1:78782851-78782870	Msa1041200:CDS	70.0%
	GGTTACGCTGCGGCAAGGGG+AGG	-	chr7_1:78782851-78782870	Msa1041200:CDS	70.0%
	CGCTGCGGCAAGGGGAGGAG+TGG	-	chr7_1:78782856-78782875	Msa1041200:CDS	75.0%
	CGCTGCGGCAAGGGGAGGAG+TGG	-	chr7_1:78782856-78782875	Msa1041200:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	78782427	78783415	78782427	ID=Msa1041200;Name=Msa1041200
chr7_1	mRNA	78782427	78783415	78782427	ID=Msa1041200-mRNA-1;Parent=Msa1041200;Name=Msa1041200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=236\|1\|1\|1\|1\|1\|2\|364\|92
chr7_1	exon	78782427	78782995	78782427	ID=Msa1041200-mRNA-1:exon:21072;Parent=Msa1041200-mRNA-1
chr7_1	exon	78783106	78783415	78783106	ID=Msa1041200-mRNA-1:exon:21071;Parent=Msa1041200-mRNA-1
chr7_1	five_prime_UTR	78783180	78783415	78783180	ID=Msa1041200-mRNA-1:five_prime_utr;Parent=Msa1041200-mRNA-1
chr7_1	CDS	78783106	78783179	78783106	ID=Msa1041200-mRNA-1:cds;Parent=Msa1041200-mRNA-1
chr7_1	CDS	78782791	78782995	78782791	ID=Msa1041200-mRNA-1:cds;Parent=Msa1041200-mRNA-1
chr7_1	three_prime_UTR	78782427	78782790	78782427	ID=Msa1041200-mRNA-1:three_prime_utr;Parent=Msa1041200-mRNA-1

Gene Sequence	>Msa1041200 ATGGCTCGTTCTTTCGCTAACGCTAAGGCTTTCTCTGCTATTGTCCTTGAAGGATTCTCCAACACTCTCACAAGACGTGGTTACGCTGCGGCAAGGGGAGGAGTGGTGTCTGTTGGCAACAAGATGGGACCCACAAAATCAGGGGAAGATGGTGCTTCGACTTATAAGGTTTCATGGGTTCCAGATCCCGTCACTGGTTACTATAAGCCTGAGAATATTAAGGATACTGATGCCGCTGATTTACGTGCTAAGCTTCTCCGCAAAAAATTCAACAACTAA
Protein sequence	>Msa1041200 MARSFANAKAFSAIVLEGFSNTLTRRGYAAARGGVVSVGNKMGPTKSGEDGASTYKVSWVPDPVTGYYKPENIKDTDAADLRAKLLRKKFNN*