Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050780 | XP_013447667.1 | 98.879 | 446 | 4 | 1 | 1 | 445 | 1 | 446 | 0.0 | 912 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050780 | sp|Q94KT8|COBRA_ARATH | 75.227 | 440 | 96 | 2 | 4 | 430 | 3 | 442 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050780 | A0A072TXZ2 | 98.879 | 446 | 4 | 1 | 1 | 445 | 1 | 446 | 0.0 | 912 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138390 | Msa1050780 | 0.804211 | 2.408497e-49 | -8.615850e-47 |
| Msa1009440 | Msa1050780 | 0.844050 | 9.608360e-59 | -8.615850e-47 |
| Msa1050780 | Msa1098180 | 0.873495 | 1.406718e-67 | -8.615850e-47 |
| Msa1050780 | Msa1351640 | 0.800191 | 1.618446e-48 | -8.615850e-47 |
| Msa1050780 | Msa1375060 | 0.805389 | 1.367017e-49 | -8.615850e-47 |
| Msa1050780 | Msa1392330 | 0.805677 | 1.189251e-49 | -8.615850e-47 |
| Msa1050780 | Msa1460820 | 0.807319 | 5.355771e-50 | -8.615850e-47 |
| Msa0240450 | Msa1050780 | 0.804081 | 2.562950e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050780 | MtrunA17_Chr7g0219921 | 98.879 | 446 | 4 | 1 | 1 | 445 | 1 | 446 | 0.0 | 912 |
| Msa1050780 | MtrunA17_Chr6g0455401 | 81.614 | 446 | 78 | 3 | 1 | 444 | 2 | 445 | 0.0 | 766 |
| Msa1050780 | MtrunA17_Chr2g0308381 | 80.549 | 437 | 80 | 2 | 7 | 439 | 11 | 446 | 0.0 | 746 |
| Msa1050780 | MtrunA17_Chr6g0455391 | 76.485 | 421 | 89 | 4 | 1 | 419 | 1 | 413 | 0.0 | 665 |
| Msa1050780 | MtrunA17_Chr6g0455411 | 67.308 | 416 | 132 | 1 | 15 | 430 | 8 | 419 | 0.0 | 622 |
| Msa1050780 | MtrunA17_Chr2g0333731 | 65.566 | 424 | 145 | 1 | 23 | 445 | 25 | 448 | 0.0 | 621 |
| Msa1050780 | MtrunA17_Chr7g0219931 | 67.447 | 427 | 131 | 2 | 9 | 435 | 6 | 424 | 0.0 | 620 |
| Msa1050780 | MtrunA17_Chr2g0308371 | 60.093 | 431 | 162 | 3 | 16 | 441 | 14 | 439 | 0.0 | 572 |
| Msa1050780 | MtrunA17_Chr3g0145441 | 44.755 | 429 | 224 | 8 | 14 | 433 | 30 | 454 | 1.67e-133 | 392 |
| Msa1050780 | MtrunA17_Chr4g0068011 | 25.983 | 458 | 280 | 19 | 17 | 428 | 189 | 633 | 7.94e-40 | 151 |
| Msa1050780 | MtrunA17_Chr2g0294901 | 27.015 | 459 | 275 | 18 | 33 | 444 | 208 | 653 | 2.78e-39 | 150 |
| Msa1050780 | MtrunA17_Chr5g0394101 | 26.932 | 453 | 268 | 20 | 34 | 441 | 26 | 460 | 3.33e-37 | 141 |
| Msa1050780 | MtrunA17_Chr2g0319581 | 25.828 | 453 | 274 | 18 | 34 | 441 | 226 | 661 | 1.99e-35 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050780 | AT5G60920.1 | 75.227 | 440 | 96 | 2 | 4 | 430 | 3 | 442 | 0.0 | 714 |
| Msa1050780 | AT3G02210.1 | 73.836 | 451 | 109 | 4 | 1 | 443 | 1 | 450 | 0.0 | 699 |
| Msa1050780 | AT3G29810.1 | 72.998 | 437 | 104 | 4 | 15 | 441 | 8 | 440 | 0.0 | 678 |
| Msa1050780 | AT5G60920.2 | 78.228 | 395 | 84 | 1 | 38 | 430 | 1 | 395 | 0.0 | 678 |
| Msa1050780 | AT5G15630.1 | 69.157 | 415 | 122 | 2 | 26 | 438 | 20 | 430 | 0.0 | 624 |
| Msa1050780 | AT5G15630.3 | 68.090 | 398 | 121 | 2 | 43 | 438 | 1 | 394 | 0.0 | 590 |
| Msa1050780 | AT5G15630.4 | 67.792 | 385 | 118 | 2 | 56 | 438 | 1 | 381 | 0.0 | 568 |
| Msa1050780 | AT5G15630.2 | 67.792 | 385 | 118 | 2 | 56 | 438 | 1 | 381 | 0.0 | 568 |
| Msa1050780 | AT5G15630.5 | 72.000 | 325 | 87 | 1 | 26 | 350 | 20 | 340 | 1.84e-180 | 507 |
| Msa1050780 | AT1G09790.1 | 53.071 | 407 | 181 | 4 | 15 | 418 | 24 | 423 | 7.50e-153 | 441 |
| Msa1050780 | AT1G09790.2 | 53.171 | 410 | 181 | 5 | 13 | 418 | 10 | 412 | 2.79e-151 | 437 |
| Msa1050780 | AT5G60950.1 | 55.172 | 203 | 82 | 3 | 13 | 214 | 8 | 202 | 9.16e-76 | 236 |
| Msa1050780 | AT4G16120.1 | 27.488 | 422 | 254 | 16 | 33 | 409 | 216 | 630 | 3.94e-41 | 155 |
| Msa1050780 | AT5G49270.1 | 24.313 | 473 | 305 | 17 | 17 | 445 | 200 | 663 | 1.84e-38 | 148 |
| Msa1050780 | AT3G20580.1 | 27.093 | 454 | 272 | 21 | 34 | 441 | 229 | 669 | 1.98e-34 | 136 |
| Msa1050780 | AT3G16860.1 | 25.439 | 456 | 279 | 17 | 33 | 441 | 209 | 650 | 6.07e-34 | 135 |
| Msa1050780 | AT4G27110.1 | 27.193 | 456 | 273 | 21 | 33 | 443 | 218 | 659 | 6.09e-34 | 135 |
Find 155 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTCTATGCATATGTTTA+AGG | 0.116457 | 7_2:+16718202 | Msa1050780:CDS |
| CATTTGGCATCAGTTGTTTC+TGG | 0.237555 | 7_2:+16717310 | Msa1050780:CDS |
| GGTGATTGTTCAAAATTTAA+AGG | 0.254979 | 7_2:+16716299 | Msa1050780:CDS |
| GATGCCAAATGTGGCGTATT+TGG | 0.260685 | 7_2:-16717298 | None:intergenic |
| TACAAGTCATTAAATCCTTA+TGG | 0.268164 | 7_2:+16717544 | Msa1050780:CDS |
| TCATATTTGTGATGTCAATT+TGG | 0.299272 | 7_2:+16718288 | Msa1050780:three_prime_UTR |
| TTGCTGATTGTAAGGCGTTC+CGG | 0.306156 | 7_2:-16716372 | None:intergenic |
| TTGATTGTGATATTCCCATT+TGG | 0.317355 | 7_2:-16715749 | None:intergenic |
| CACAAATATGACGCCAAAAC+TGG | 0.318545 | 7_2:-16718276 | None:intergenic |
| TGTGGGAGTTATGGGGTTGT+TGG | 0.325152 | 7_2:-16714689 | None:intergenic |
| CTACTTTCTTTCACTTCAAC+AGG | 0.326474 | 7_2:+16714790 | Msa1050780:CDS |
| CAGTCCAAATACGCCACATT+TGG | 0.332811 | 7_2:+16717294 | Msa1050780:intron |
| ACCGTTGTAGATTTACTTCC+CGG | 0.336251 | 7_2:+16716353 | Msa1050780:CDS |
| AAAGAATAATTTATCACCTT+TGG | 0.340712 | 7_2:+16717339 | Msa1050780:CDS |
| TATCCATGGTTACCTAATAC+TGG | 0.349350 | 7_2:+16718124 | Msa1050780:CDS |
| GCATCAGTTGTTTCTGGTAA+TGG | 0.350046 | 7_2:+16717316 | Msa1050780:CDS |
| CCTTAACATGCCAGTGGATT+CGG | 0.353109 | 7_2:-16717390 | None:intergenic |
| AAGAATGTGGAAAATAAATA+TGG | 0.359669 | 7_2:-16714610 | None:intergenic |
| TGATTGTGATATTCCCATTT+GGG | 0.364692 | 7_2:-16715748 | None:intergenic |
| AGATGATACAGCAATGCTTT+GGG | 0.367593 | 7_2:+16717931 | Msa1050780:intron |
| TGCTGATTGTAAGGCGTTCC+GGG | 0.370044 | 7_2:-16716371 | None:intergenic |
| AAATGTGTATGTGGGAGTTA+TGG | 0.370102 | 7_2:-16714698 | None:intergenic |
| TCTTGCCGAGAACCAGTATT+AGG | 0.375676 | 7_2:-16718136 | None:intergenic |
| TGAGTCAGATTGTCGAAGTT+TGG | 0.377001 | 7_2:-16717505 | None:intergenic |
| TAAAGTTACAACTTACAATA+AGG | 0.381272 | 7_2:-16718467 | None:intergenic |
| CACTTACTTATTAAACCATA+AGG | 0.385273 | 7_2:-16717559 | None:intergenic |
| AATGTGTATGTGGGAGTTAT+GGG | 0.388579 | 7_2:-16714697 | None:intergenic |
| ATGGGAATATCACAATCAAA+TGG | 0.394559 | 7_2:+16715753 | Msa1050780:CDS |
| TTCGCAATTTGCTGATTGTA+AGG | 0.399179 | 7_2:-16716380 | None:intergenic |
| CGGGACCTGGTTATACTTGT+GGG | 0.403893 | 7_2:+16716540 | Msa1050780:CDS |
| CAGATGATACAGCAATGCTT+TGG | 0.411116 | 7_2:+16717930 | Msa1050780:intron |
| TGCTTTAGTAATGGCCTCCT+TGG | 0.418302 | 7_2:+16718171 | Msa1050780:CDS |
| TGAAAGTTGATTTATCCTTT+CGG | 0.420310 | 7_2:-16718024 | None:intergenic |
| TTACATAGGATTCAGCATAT+TGG | 0.421072 | 7_2:+16718385 | Msa1050780:three_prime_UTR |
| AAGATCCTACCATGGCAGTT+GGG | 0.422373 | 7_2:+16716438 | Msa1050780:CDS |
| GTGGAAAATAAATATGGAAC+AGG | 0.429508 | 7_2:-16714604 | None:intergenic |
| CCGAATCCACTGGCATGTTA+AGG | 0.429523 | 7_2:+16717390 | Msa1050780:CDS |
| GCCACATGCACATGTTGGGC+AGG | 0.434884 | 7_2:-16717153 | None:intergenic |
| TTCATTGTTTGCTTTAGTAA+TGG | 0.442319 | 7_2:+16718162 | Msa1050780:CDS |
| TGAATCCTATGTAACAATCC+TGG | 0.443066 | 7_2:-16718376 | None:intergenic |
| TATGATCCACTTGACCCAAA+TGG | 0.445643 | 7_2:+16715734 | Msa1050780:CDS |
| ACCGTATGAATTATTCCGAT+TGG | 0.456765 | 7_2:+16717464 | Msa1050780:CDS |
| GGCAGCCACATGCACATGTT+GGG | 0.458842 | 7_2:-16717157 | None:intergenic |
| GAATTATTCCGATTGGAACT+TGG | 0.459690 | 7_2:+16717471 | Msa1050780:CDS |
| GCTTCCCCTGGCTGGTCACT+AGG | 0.460746 | 7_2:+16716215 | Msa1050780:CDS |
| ATGATCCACTTGACCCAAAT+GGG | 0.461090 | 7_2:+16715735 | Msa1050780:CDS |
| GCATCCCAGGATTGTTACAT+AGG | 0.462791 | 7_2:+16718371 | Msa1050780:three_prime_UTR |
| ATACTTACAACATAACCATC+AGG | 0.464286 | 7_2:-16715794 | None:intergenic |
| GGTAACCATGGATAAGCATC+AGG | 0.472380 | 7_2:-16718115 | None:intergenic |
| AAGGTGGTGTGCTTAGTTCA+TGG | 0.474312 | 7_2:+16716411 | Msa1050780:CDS |
| CCGGGACCTGGTTATACTTG+TGG | 0.479248 | 7_2:+16716539 | Msa1050780:CDS |
| CAAATCAGTGTTGGTAGAGC+CGG | 0.480151 | 7_2:+16716467 | Msa1050780:CDS |
| GGAGGTAATCTGGAGTATGA+TGG | 0.483048 | 7_2:+16716256 | Msa1050780:CDS |
| GAGATTTGCTCATGCATCCC+AGG | 0.483177 | 7_2:+16718358 | Msa1050780:three_prime_UTR |
| GTGGAAGTAAAGAGAAGACT+TGG | 0.483578 | 7_2:-16714656 | None:intergenic |
| AGAGAGAGAGTGGAAGAATG+TGG | 0.485162 | 7_2:-16714623 | None:intergenic |
| CACAAGTATAACCAGGTCCC+GGG | 0.494067 | 7_2:-16716538 | None:intergenic |
| AGTTTATTCAACCAGACAAA+AGG | 0.499947 | 7_2:+16716588 | Msa1050780:CDS |
| CCACAAGTATAACCAGGTCC+CGG | 0.502390 | 7_2:-16716539 | None:intergenic |
| CCCCTGGCTGGTCACTAGGA+TGG | 0.506120 | 7_2:+16716219 | Msa1050780:CDS |
| AGGTGGTGTGCTTAGTTCAT+GGG | 0.510178 | 7_2:+16716412 | Msa1050780:CDS |
| GGTTACCTAATACTGGTTCT+CGG | 0.511981 | 7_2:+16718131 | Msa1050780:CDS |
| AAATTTCACCTTGAGTGCCC+CGG | 0.512241 | 7_2:+16716520 | Msa1050780:CDS |
| TGGGAATATCACAATCAAAT+GGG | 0.515468 | 7_2:+16715754 | Msa1050780:CDS |
| AAGCGATGTGACGATATTGT+TGG | 0.517365 | 7_2:-16716196 | None:intergenic |
| CAAGATCCTACCATGGCAGT+TGG | 0.517499 | 7_2:+16716437 | Msa1050780:CDS |
| CGGATTGAACATTGCCACTA+GGG | 0.519794 | 7_2:-16717991 | None:intergenic |
| TGGCAGCCACATGCACATGT+TGG | 0.520435 | 7_2:-16717158 | None:intergenic |
| TTTGATTCATTGCAGTGACA+TGG | 0.521238 | 7_2:+16717039 | Msa1050780:intron |
| ATATATCAACAAACATTACA+TGG | 0.521484 | 7_2:+16718510 | Msa1050780:three_prime_UTR |
| TGGAACAGGAGGAGACTGAC+TGG | 0.524230 | 7_2:-16714590 | None:intergenic |
| ACGGTAATTAAAATTAGTAA+TGG | 0.524317 | 7_2:-16717446 | None:intergenic |
| CAGAGTAACTCATCACAGTC+CGG | 0.525422 | 7_2:+16717179 | Msa1050780:CDS |
| AGGTTAACTACAAGGAATAC+TGG | 0.527274 | 7_2:+16717410 | Msa1050780:CDS |
| CTTAATCATGCTGGCCCTAG+TGG | 0.531245 | 7_2:+16717977 | Msa1050780:CDS |
| AATTTCACCTTGAGTGCCCC+GGG | 0.531568 | 7_2:+16716521 | Msa1050780:CDS |
| TATCGTCACATCGCTTCCCC+TGG | 0.531832 | 7_2:+16716203 | Msa1050780:CDS |
| GTCCATCCTAGTGACCAGCC+AGG | 0.533946 | 7_2:-16716221 | None:intergenic |
| ATATTCCCATTTGGGTCAAG+TGG | 0.535481 | 7_2:-16715740 | None:intergenic |
| AACATACTTAACACAAGTCC+CGG | 0.535871 | 7_2:-16717198 | None:intergenic |
| GGAAGTAAATCTACAACGGT+TGG | 0.536061 | 7_2:-16716350 | None:intergenic |
| GTCGTTATAGAAAGATGAGA+GGG | 0.537245 | 7_2:-16717120 | None:intergenic |
| ATCCTTTCGGAAGAGTAGCT+CGG | 0.537437 | 7_2:-16718011 | None:intergenic |
| TCCATCCTAGTGACCAGCCA+GGG | 0.540729 | 7_2:-16716220 | None:intergenic |
| GAGGTAATCTGGAGTATGAT+GGG | 0.541530 | 7_2:+16716257 | Msa1050780:CDS |
| ACAGGAGGAGACTGACTGGA+TGG | 0.544402 | 7_2:-16714586 | None:intergenic |
| ACCTGGTTATACTTGTGGGC+CGG | 0.548289 | 7_2:+16716544 | Msa1050780:CDS |
| CATAGGATTCAGCATATTGG+TGG | 0.552396 | 7_2:+16718388 | Msa1050780:three_prime_UTR |
| CAAATTGCGAATTGCTGCAA+AGG | 0.552727 | 7_2:+16716392 | Msa1050780:CDS |
| TCTGGTTGAATAAACTGAGT+AGG | 0.553209 | 7_2:-16716581 | None:intergenic |
| GAAAATAAATATGGAACAGG+AGG | 0.553473 | 7_2:-16714601 | None:intergenic |
| CTGAACAACCAAGTTCCAAT+CGG | 0.553717 | 7_2:-16717479 | None:intergenic |
| TGATAGAGAAAATGTGTATG+TGG | 0.554279 | 7_2:-16714707 | None:intergenic |
| CATGGATAAGCATCAGGAGG+TGG | 0.554558 | 7_2:-16718109 | None:intergenic |
| TCCAATCGGAATAATTCATA+CGG | 0.554746 | 7_2:-16717465 | None:intergenic |
| CCGTTGAAGTAGATCCTTCG+AGG | 0.556835 | 7_2:-16718070 | None:intergenic |
| GAATCCTATGTAACAATCCT+GGG | 0.559415 | 7_2:-16718375 | None:intergenic |
| AGAAACAAGAAGAGAATGCA+AGG | 0.560570 | 7_2:-16714769 | None:intergenic |
| TCGGATTGAACATTGCCACT+AGG | 0.564514 | 7_2:-16717992 | None:intergenic |
| TGAACAATCACCTTGTTCTG+TGG | 0.567033 | 7_2:-16716288 | None:intergenic |
| CGGACTGTGATGAGTTACTC+TGG | 0.567048 | 7_2:-16717178 | None:intergenic |
| AGATCCTACCATGGCAGTTG+GGG | 0.567928 | 7_2:+16716439 | Msa1050780:CDS |
| TAATACTGGTTCTCGGCAAG+AGG | 0.576944 | 7_2:+16718138 | Msa1050780:CDS |
| CCCTGCCCAACATGTGCATG+TGG | 0.583543 | 7_2:+16717152 | Msa1050780:CDS |
| AGAGTAACTCATCACAGTCC+GGG | 0.585751 | 7_2:+16717180 | Msa1050780:CDS |
| GGGGCGTTTCAAATCAGTGT+TGG | 0.588523 | 7_2:+16716458 | Msa1050780:CDS |
| GATAAAGTATAATCACAGGT+TGG | 0.588813 | 7_2:-16718227 | None:intergenic |
| AGGGCTGGGCTTTCCCTCGA+AGG | 0.589607 | 7_2:+16718056 | Msa1050780:CDS |
| TGTGTCCGATCCGAATCCAC+TGG | 0.591212 | 7_2:+16717380 | Msa1050780:CDS |
| CACCTCCTGATGCTTATCCA+TGG | 0.592826 | 7_2:+16718110 | Msa1050780:CDS |
| TACTTACAACATAACCATCA+GGG | 0.593553 | 7_2:-16715793 | None:intergenic |
| TTGAAACGCCCCAACTGCCA+TGG | 0.594933 | 7_2:-16716447 | None:intergenic |
| GGATCACAGACCACAGAACA+AGG | 0.595290 | 7_2:+16716278 | Msa1050780:CDS |
| GCTGGTCACTAGGATGGACA+TGG | 0.597573 | 7_2:+16716225 | Msa1050780:CDS |
| GCCGGCCCACAAGTATAACC+AGG | 0.599635 | 7_2:-16716545 | None:intergenic |
| TGTCGTTATAGAAAGATGAG+AGG | 0.599773 | 7_2:-16717121 | None:intergenic |
| CAGGAGGAGACTGACTGGAT+GGG | 0.602149 | 7_2:-16714585 | None:intergenic |
| ATTATACAATGGACCCCTGA+TGG | 0.602448 | 7_2:+16715779 | Msa1050780:CDS |
| TGAGAGGGAGACACAGCAAG+TGG | 0.605441 | 7_2:-16717105 | None:intergenic |
| CAATGATAAAGTATAATCAC+AGG | 0.606313 | 7_2:-16718231 | None:intergenic |
| AGTTAACCTTAACATGCCAG+TGG | 0.609000 | 7_2:-16717396 | None:intergenic |
| GATAGAGAAAATGTGTATGT+GGG | 0.609060 | 7_2:-16714706 | None:intergenic |
| TGACTAGTACATTGAACCAA+AGG | 0.614394 | 7_2:-16717355 | None:intergenic |
| GCATGTTAAGGTTAACTACA+AGG | 0.617139 | 7_2:+16717402 | Msa1050780:CDS |
| CAAGGAATACTGGCGTGTGA+AGG | 0.617910 | 7_2:+16717420 | Msa1050780:CDS |
| GATGATACAGCAATGCTTTG+GGG | 0.620085 | 7_2:+16717932 | Msa1050780:intron |
| ATGTGTATGTGGGAGTTATG+GGG | 0.624679 | 7_2:-16714696 | None:intergenic |
| CCTCGAAGGATCTACTTCAA+CGG | 0.625513 | 7_2:+16718070 | Msa1050780:CDS |
| ACATGCCAGTGGATTCGGAT+CGG | 0.625896 | 7_2:-16717385 | None:intergenic |
| GGTTGTTGGTTCAAGATCTG+TGG | 0.630452 | 7_2:-16714675 | None:intergenic |
| ATTGCGAATTGCTGCAAAGG+TGG | 0.631481 | 7_2:+16716395 | Msa1050780:CDS |
| TCAAATGGGATATTATACAA+TGG | 0.631980 | 7_2:+16715768 | Msa1050780:CDS |
| ATCCGAGCTACTCTTCCGAA+AGG | 0.638631 | 7_2:+16718009 | Msa1050780:CDS |
| GAAGTTGTTCATCGTAACTG+TGG | 0.642636 | 7_2:-16716174 | None:intergenic |
| GAAACAACTGATGCCAAATG+TGG | 0.646724 | 7_2:-16717307 | None:intergenic |
| GAGAGGGAGACACAGCAAGT+GGG | 0.646972 | 7_2:-16717104 | None:intergenic |
| GAACCAGTATTAGGTAACCA+TGG | 0.647950 | 7_2:-16718127 | None:intergenic |
| CCACATGCACATGTTGGGCA+GGG | 0.652900 | 7_2:-16717152 | None:intergenic |
| ATAGAATACTAAGACTGCCA+AGG | 0.656336 | 7_2:-16718188 | None:intergenic |
| TAAGCTTGATGAATCTTGTG+CGG | 0.656744 | 7_2:+16718538 | Msa1050780:three_prime_UTR |
| ACATGTTGGGCAGGGTACAA+TGG | 0.658775 | 7_2:-16717144 | None:intergenic |
| CGTTGAAGTAGATCCTTCGA+GGG | 0.658891 | 7_2:-16718069 | None:intergenic |
| TGGAAGTAAAGAGAAGACTT+GGG | 0.660004 | 7_2:-16714655 | None:intergenic |
| ACAAGTATAACCAGGTCCCG+GGG | 0.665291 | 7_2:-16716537 | None:intergenic |
| AACCATGGATAAGCATCAGG+AGG | 0.668253 | 7_2:-16718112 | None:intergenic |
| GAATACTAAGACTGCCAAGG+AGG | 0.670179 | 7_2:-16718185 | None:intergenic |
| AACGCCCCAACTGCCATGGT+AGG | 0.675826 | 7_2:-16716443 | None:intergenic |
| ACTTACAACATAACCATCAG+GGG | 0.679147 | 7_2:-16715792 | None:intergenic |
| CCATCCTAGTGACCAGCCAG+GGG | 0.683887 | 7_2:-16716219 | None:intergenic |
| AGAGGGACTGACTATATACA+CGG | 0.699789 | 7_2:+16718325 | Msa1050780:three_prime_UTR |
| TCCGGGAAGTAAATCTACAA+CGG | 0.714386 | 7_2:-16716354 | None:intergenic |
| GGACTGACTATATACACGGG+TGG | 0.715590 | 7_2:+16718329 | Msa1050780:three_prime_UTR |
| ATGGGCTCAAGATCCTACCA+TGG | 0.715689 | 7_2:+16716430 | Msa1050780:CDS |
| GAGGGACTGACTATATACAC+GGG | 0.716252 | 7_2:+16718326 | Msa1050780:three_prime_UTR |
| CTGGTCACTAGGATGGACAT+GGG | 0.718386 | 7_2:+16716226 | Msa1050780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATGATTTATTATATG+AGG | + | chr7_2:16715494-16715513 | Msa1050780:intron | 10.0% |
| !! | TTTATAAAAACCTTATAATA+AGG | + | chr7_2:16715523-16715542 | Msa1050780:intron | 10.0% |
| !! | TTATAAAAACCTTATAATAA+GGG | + | chr7_2:16715524-16715543 | Msa1050780:intron | 10.0% |
| !! | AAATATATCTAAATAACTAA+CGG | - | chr7_2:16716134-16716153 | None:intergenic | 10.0% |
| !!! | ATTTTGCATAATTTTTTTGT+TGG | + | chr7_2:16714882-16714901 | Msa1050780:intron | 15.0% |
| !! | AAAAATGTAATATTTGTTTG+TGG | + | chr7_2:16714942-16714961 | Msa1050780:intron | 15.0% |
| !! | AAAATGTAATATTTGTTTGT+GGG | + | chr7_2:16714943-16714962 | Msa1050780:intron | 15.0% |
| !!! | TTTTTTGGTAAGAAATTATT+TGG | + | chr7_2:16715119-16715138 | Msa1050780:intron | 15.0% |
| !! | TTAAATGTAATCACATATAT+CGG | - | chr7_2:16716882-16716901 | None:intergenic | 15.0% |
| !!! | ACTCATATTTATTTTCTTTT+TGG | + | chr7_2:16717268-16717287 | Msa1050780:intron | 15.0% |
| !! | GTTAATGAATATATAAGTAA+TGG | + | chr7_2:16717744-16717763 | Msa1050780:intron | 15.0% |
| !! | AAGAATGTGGAAAATAAATA+TGG | - | chr7_2:16714613-16714632 | None:intergenic | 20.0% |
| !! | TTGCTATAAAAATTTGCATA+TGG | + | chr7_2:16715048-16715067 | Msa1050780:intron | 20.0% |
| !! | TAAGATCAAAGTTAAATTGT+GGG | - | chr7_2:16717012-16717031 | None:intergenic | 20.0% |
| !! | TTAAGATCAAAGTTAAATTG+TGG | - | chr7_2:16717013-16717032 | None:intergenic | 20.0% |
| !! | AAAGAATAATTTATCACCTT+TGG | + | chr7_2:16717339-16717358 | Msa1050780:CDS | 20.0% |
| !! | ACGGTAATTAAAATTAGTAA+TGG | - | chr7_2:16717449-16717468 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTTTTCTCAGT+TGG | + | chr7_2:16717659-16717678 | Msa1050780:intron | 20.0% |
| !!! | TACTTTTTTTTTTCTCAGTT+GGG | + | chr7_2:16717660-16717679 | Msa1050780:intron | 20.0% |
| !! | GATAACACAATTCAAATAAA+TGG | - | chr7_2:16717817-16717836 | None:intergenic | 20.0% |
| !! | TAAAGTTACAACTTACAATA+AGG | - | chr7_2:16718470-16718489 | None:intergenic | 20.0% |
| !! | ATATATCAACAAACATTACA+TGG | + | chr7_2:16718510-16718529 | Msa1050780:three_prime_UTR | 20.0% |
| ! | TTCTCTATCAAGTACAAAAA+TGG | + | chr7_2:16714720-16714739 | Msa1050780:exon | 25.0% |
| ! | TCTCTATCAAGTACAAAAAT+GGG | + | chr7_2:16714721-16714740 | Msa1050780:exon | 25.0% |
| !!! | TCATTTTTTACATATCGAGA+TGG | - | chr7_2:16715592-16715611 | None:intergenic | 25.0% |
| ! | TCAAATGGGATATTATACAA+TGG | + | chr7_2:16715768-16715787 | Msa1050780:CDS | 25.0% |
| ! | ATACACTTCACAAATGTTTA+TGG | - | chr7_2:16716039-16716058 | None:intergenic | 25.0% |
| ! | GGTGATTGTTCAAAATTTAA+AGG | + | chr7_2:16716299-16716318 | Msa1050780:CDS | 25.0% |
| ! | TTTACAGCATAAAATCTAGA+AGG | - | chr7_2:16717249-16717268 | None:intergenic | 25.0% |
| ! | TACAAGTCATTAAATCCTTA+TGG | + | chr7_2:16717544-16717563 | Msa1050780:CDS | 25.0% |
| ! | CACTTACTTATTAAACCATA+AGG | - | chr7_2:16717562-16717581 | None:intergenic | 25.0% |
| !! | AGTAAGATGTAAAAGTTTTG+AGG | - | chr7_2:16717644-16717663 | None:intergenic | 25.0% |
| ! | GGTTAATTAAGTTCAATACT+TGG | - | chr7_2:16717796-16717815 | None:intergenic | 25.0% |
| !!! | TTTCGTGAAAACTTTTTAAG+TGG | - | chr7_2:16717839-16717858 | None:intergenic | 25.0% |
| ! | TCACGAAAGTTGTTTAAATT+TGG | + | chr7_2:16717851-16717870 | Msa1050780:intron | 25.0% |
| !! | AATGATTTTCTTAATCATGC+TGG | + | chr7_2:16717968-16717987 | Msa1050780:CDS | 25.0% |
| !! | TGAAAGTTGATTTATCCTTT+CGG | - | chr7_2:16718027-16718046 | None:intergenic | 25.0% |
| !!! | ATCAACTTTCACTTTTGATA+AGG | + | chr7_2:16718036-16718055 | Msa1050780:CDS | 25.0% |
| !!! | TCAACTTTCACTTTTGATAA+GGG | + | chr7_2:16718037-16718056 | Msa1050780:CDS | 25.0% |
| ! | TTCATTGTTTGCTTTAGTAA+TGG | + | chr7_2:16718162-16718181 | Msa1050780:CDS | 25.0% |
| ! | GTATTCTATGCATATGTTTA+AGG | + | chr7_2:16718202-16718221 | Msa1050780:CDS | 25.0% |
| ! | CAATGATAAAGTATAATCAC+AGG | - | chr7_2:16718234-16718253 | None:intergenic | 25.0% |
| ! | TCATATTTGTGATGTCAATT+TGG | + | chr7_2:16718288-16718307 | Msa1050780:three_prime_UTR | 25.0% |
| GAAAATAAATATGGAACAGG+AGG | - | chr7_2:16714604-16714623 | None:intergenic | 30.0% | |
| GTGGAAAATAAATATGGAAC+AGG | - | chr7_2:16714607-16714626 | None:intergenic | 30.0% | |
| GATAGAGAAAATGTGTATGT+GGG | - | chr7_2:16714709-16714728 | None:intergenic | 30.0% | |
| TGATAGAGAAAATGTGTATG+TGG | - | chr7_2:16714710-16714729 | None:intergenic | 30.0% | |
| ! | TATGTGTTTATTTCCCCTTT+TGG | + | chr7_2:16715186-16715205 | Msa1050780:intron | 30.0% |
| !!! | GTGTGTTTTAAAGGTATGTT+TGG | + | chr7_2:16715217-16715236 | Msa1050780:intron | 30.0% |
| ! | TTAAGTTGTGTAACCAAACA+TGG | + | chr7_2:16715462-16715481 | Msa1050780:intron | 30.0% |
| TGTTCAAGTCAATTGATCAA+TGG | - | chr7_2:16715639-16715658 | None:intergenic | 30.0% | |
| ! | CTCGATGTACTTACTATTTT+TGG | + | chr7_2:16715692-16715711 | Msa1050780:intron | 30.0% |
| TGATTGTGATATTCCCATTT+GGG | - | chr7_2:16715751-16715770 | None:intergenic | 30.0% | |
| TTGATTGTGATATTCCCATT+TGG | - | chr7_2:16715752-16715771 | None:intergenic | 30.0% | |
| ATGGGAATATCACAATCAAA+TGG | + | chr7_2:16715753-16715772 | Msa1050780:CDS | 30.0% | |
| TGGGAATATCACAATCAAAT+GGG | + | chr7_2:16715754-16715773 | Msa1050780:CDS | 30.0% | |
| TACTTACAACATAACCATCA+GGG | - | chr7_2:16715796-16715815 | None:intergenic | 30.0% | |
| ATACTTACAACATAACCATC+AGG | - | chr7_2:16715797-16715816 | None:intergenic | 30.0% | |
| ATCAGTTCTTGCTTGAATAA+GGG | + | chr7_2:16715978-16715997 | Msa1050780:intron | 30.0% | |
| ! | TTTTGAACAATTGAATGTGC+AGG | + | chr7_2:16716151-16716170 | Msa1050780:intron | 30.0% |
| !!! | CACTTTAACAGTTTTGTTTG+TGG | - | chr7_2:16716495-16716514 | None:intergenic | 30.0% |
| AGTTTATTCAACCAGACAAA+AGG | + | chr7_2:16716588-16716607 | Msa1050780:CDS | 30.0% | |
| ! | GTGAAAAGTGTGATATTGAT+AGG | - | chr7_2:16716699-16716718 | None:intergenic | 30.0% |
| ACAAAAACTTCAACTATGGA+TGG | - | chr7_2:16716733-16716752 | None:intergenic | 30.0% | |
| ! | TCCATAGTTGAAGTTTTTGT+TGG | + | chr7_2:16716733-16716752 | Msa1050780:intron | 30.0% |
| ! | TTTTTGTTGGCAACAGAAAA+TGG | + | chr7_2:16716746-16716765 | Msa1050780:intron | 30.0% |
| TCCAATCGGAATAATTCATA+CGG | - | chr7_2:16717468-16717487 | None:intergenic | 30.0% | |
| TTTGTTTGCTTCTTGAGTAA+TGG | + | chr7_2:16717595-16717614 | Msa1050780:intron | 30.0% | |
| TAAGTTCAATACTTGGTCAA+TGG | - | chr7_2:16717789-16717808 | None:intergenic | 30.0% | |
| GATAAAGTATAATCACAGGT+TGG | - | chr7_2:16718230-16718249 | None:intergenic | 30.0% | |
| ! | ATTTTCAGTCTAACCAGTTT+TGG | + | chr7_2:16718263-16718282 | Msa1050780:three_prime_UTR | 30.0% |
| !!! | TGATGTCAATTTGGTTTTCA+AGG | + | chr7_2:16718297-16718316 | Msa1050780:three_prime_UTR | 30.0% |
| TTACATAGGATTCAGCATAT+TGG | + | chr7_2:16718385-16718404 | Msa1050780:three_prime_UTR | 30.0% | |
| TGGAAGTAAAGAGAAGACTT+GGG | - | chr7_2:16714658-16714677 | None:intergenic | 35.0% | |
| AATGTGTATGTGGGAGTTAT+GGG | - | chr7_2:16714700-16714719 | None:intergenic | 35.0% | |
| AAATGTGTATGTGGGAGTTA+TGG | - | chr7_2:16714701-16714720 | None:intergenic | 35.0% | |
| AGAAACAAGAAGAGAATGCA+AGG | - | chr7_2:16714772-16714791 | None:intergenic | 35.0% | |
| CTACTTTCTTTCACTTCAAC+AGG | + | chr7_2:16714790-16714809 | Msa1050780:CDS | 35.0% | |
| !!! | TTATTTCCCCTTTTGGAGTT+TGG | + | chr7_2:16715193-16715212 | Msa1050780:intron | 35.0% |
| !! | GAGTTTGGAGTGTGTTTTAA+AGG | + | chr7_2:16715208-16715227 | Msa1050780:intron | 35.0% |
| ! | GTTTGGATTGACTTATTTGC+TGG | + | chr7_2:16715234-16715253 | Msa1050780:intron | 35.0% |
| ATTTCAACTTCAGCCATGTT+TGG | - | chr7_2:16715478-16715497 | None:intergenic | 35.0% | |
| ACCTTATAATAAGGGAACAC+AGG | + | chr7_2:16715532-16715551 | Msa1050780:intron | 35.0% | |
| ACCTGTGTTCCCTTATTATA+AGG | - | chr7_2:16715536-16715555 | None:intergenic | 35.0% | |
| TAATAAGGGAACACAGGTAT+AGG | + | chr7_2:16715538-16715557 | Msa1050780:intron | 35.0% | |
| GGTATAGGTTGTGTATAAGA+TGG | + | chr7_2:16715553-16715572 | Msa1050780:intron | 35.0% | |
| ACTTACAACATAACCATCAG+GGG | - | chr7_2:16715795-16715814 | None:intergenic | 35.0% | |
| TGTATGTTGTACACTATGCT+TGG | + | chr7_2:16715856-16715875 | Msa1050780:intron | 35.0% | |
| !!! | GCTTGGTGTTCTAATGTTTT+TGG | + | chr7_2:16715873-16715892 | Msa1050780:intron | 35.0% |
| !!! | CTTTTATTTCTGCCTGTGTT+CGG | + | chr7_2:16715899-16715918 | Msa1050780:intron | 35.0% |
| ACAAAAAATGTACCGAACAC+AGG | - | chr7_2:16715914-16715933 | None:intergenic | 35.0% | |
| GATCAGTTCTTGCTTGAATA+AGG | + | chr7_2:16715977-16715996 | Msa1050780:intron | 35.0% | |
| ACGGAACAAAAACAAACACA+AGG | - | chr7_2:16716115-16716134 | None:intergenic | 35.0% | |
| ! | GGATTCTTTTTACAGCAATG+TGG | - | chr7_2:16716332-16716351 | None:intergenic | 35.0% |
| !! | TTCGCAATTTGCTGATTGTA+AGG | - | chr7_2:16716383-16716402 | None:intergenic | 35.0% |
| !!! | AACAGTTTTGTTTGTGGTTC+CGG | - | chr7_2:16716489-16716508 | None:intergenic | 35.0% |
| ! | GCACTCAAGGTGAAATTTTT+CGG | - | chr7_2:16716518-16716537 | None:intergenic | 35.0% |
| TCTGGTTGAATAAACTGAGT+AGG | - | chr7_2:16716584-16716603 | None:intergenic | 35.0% | |
| ! | GTGATATTGATAGGAAGCAT+AGG | - | chr7_2:16716690-16716709 | None:intergenic | 35.0% |
| GCCAACAAAAACTTCAACTA+TGG | - | chr7_2:16716737-16716756 | None:intergenic | 35.0% | |
| TGTCTTTGTCTGTGTTTGAT+AGG | + | chr7_2:16716956-16716975 | Msa1050780:intron | 35.0% | |
| TTTGATTCATTGCAGTGACA+TGG | + | chr7_2:16717039-16717058 | Msa1050780:intron | 35.0% | |
| GTCGTTATAGAAAGATGAGA+GGG | - | chr7_2:16717123-16717142 | None:intergenic | 35.0% | |
| TGTCGTTATAGAAAGATGAG+AGG | - | chr7_2:16717124-16717143 | None:intergenic | 35.0% | |
| AACATACTTAACACAAGTCC+CGG | - | chr7_2:16717201-16717220 | None:intergenic | 35.0% | |
| TGACTAGTACATTGAACCAA+AGG | - | chr7_2:16717358-16717377 | None:intergenic | 35.0% | |
| GCATGTTAAGGTTAACTACA+AGG | + | chr7_2:16717402-16717421 | Msa1050780:CDS | 35.0% | |
| AGGTTAACTACAAGGAATAC+TGG | + | chr7_2:16717410-16717429 | Msa1050780:CDS | 35.0% | |
| ACCGTATGAATTATTCCGAT+TGG | + | chr7_2:16717464-16717483 | Msa1050780:CDS | 35.0% | |
| GAATTATTCCGATTGGAACT+TGG | + | chr7_2:16717471-16717490 | Msa1050780:CDS | 35.0% | |
| AAGAAGCAAACAAACAAGGT+GGG | - | chr7_2:16717589-16717608 | None:intergenic | 35.0% | |
| ACTCAAGAAGCAAACAAACA+AGG | - | chr7_2:16717593-16717612 | None:intergenic | 35.0% | |
| GTGGTTAACACAGTTCAAAT+AGG | + | chr7_2:16717698-16717717 | Msa1050780:intron | 35.0% | |
| GTTAACACAGTTCAAATAGG+TGG | + | chr7_2:16717701-16717720 | Msa1050780:intron | 35.0% | |
| GGTTGATTGCTTTCATTAGA+TGG | + | chr7_2:16717722-16717741 | Msa1050780:intron | 35.0% | |
| AGATGATACAGCAATGCTTT+GGG | + | chr7_2:16717931-16717950 | Msa1050780:intron | 35.0% | |
| !! | TTTCACTTTTGATAAGGGCT+GGG | + | chr7_2:16718042-16718061 | Msa1050780:CDS | 35.0% |
| TATCCATGGTTACCTAATAC+TGG | + | chr7_2:16718124-16718143 | Msa1050780:CDS | 35.0% | |
| ATAGAATACTAAGACTGCCA+AGG | - | chr7_2:16718191-16718210 | None:intergenic | 35.0% | |
| GAATCCTATGTAACAATCCT+GGG | - | chr7_2:16718378-16718397 | None:intergenic | 35.0% | |
| TGAATCCTATGTAACAATCC+TGG | - | chr7_2:16718379-16718398 | None:intergenic | 35.0% | |
| TAAGCTTGATGAATCTTGTG+CGG | + | chr7_2:16718538-16718557 | Msa1050780:three_prime_UTR | 35.0% | |
| GTGGAAGTAAAGAGAAGACT+TGG | - | chr7_2:16714659-16714678 | None:intergenic | 40.0% | |
| ATGTGTATGTGGGAGTTATG+GGG | - | chr7_2:16714699-16714718 | None:intergenic | 40.0% | |
| ACACACTCCAAACTCCAAAA+GGG | - | chr7_2:16715203-16715222 | None:intergenic | 40.0% | |
| AACACACTCCAAACTCCAAA+AGG | - | chr7_2:16715204-16715223 | None:intergenic | 40.0% | |
| ! | AGCAATTGTGAGCTTGTTTG+AGG | + | chr7_2:16715261-16715280 | Msa1050780:intron | 40.0% |
| ! | GCAATTGTGAGCTTGTTTGA+GGG | + | chr7_2:16715262-16715281 | Msa1050780:intron | 40.0% |
| TATGATCCACTTGACCCAAA+TGG | + | chr7_2:16715734-16715753 | Msa1050780:CDS | 40.0% | |
| ATGATCCACTTGACCCAAAT+GGG | + | chr7_2:16715735-16715754 | Msa1050780:CDS | 40.0% | |
| ATATTCCCATTTGGGTCAAG+TGG | - | chr7_2:16715743-16715762 | None:intergenic | 40.0% | |
| ATTATACAATGGACCCCTGA+TGG | + | chr7_2:16715779-16715798 | Msa1050780:CDS | 40.0% | |
| GAAGTTGTTCATCGTAACTG+TGG | - | chr7_2:16716177-16716196 | None:intergenic | 40.0% | |
| AAGCGATGTGACGATATTGT+TGG | - | chr7_2:16716199-16716218 | None:intergenic | 40.0% | |
| ! | GAGGTAATCTGGAGTATGAT+GGG | + | chr7_2:16716257-16716276 | Msa1050780:CDS | 40.0% |
| TGAACAATCACCTTGTTCTG+TGG | - | chr7_2:16716291-16716310 | None:intergenic | 40.0% | |
| GGAAGTAAATCTACAACGGT+TGG | - | chr7_2:16716353-16716372 | None:intergenic | 40.0% | |
| ACCGTTGTAGATTTACTTCC+CGG | + | chr7_2:16716353-16716372 | Msa1050780:CDS | 40.0% | |
| TCCGGGAAGTAAATCTACAA+CGG | - | chr7_2:16716357-16716376 | None:intergenic | 40.0% | |
| CAAATTGCGAATTGCTGCAA+AGG | + | chr7_2:16716392-16716411 | Msa1050780:CDS | 40.0% | |
| ! | GTAGGTCTCACAATTTTTGC+CGG | - | chr7_2:16716566-16716585 | None:intergenic | 40.0% |
| ! | GCACTGATACTTCAGATTGA+AGG | + | chr7_2:16716827-16716846 | Msa1050780:intron | 40.0% |
| !! | TATCGGTGTTTTGTCAGTGT+TGG | - | chr7_2:16716865-16716884 | None:intergenic | 40.0% |
| TCAAACACAGACAAAGACAC+CGG | - | chr7_2:16716955-16716974 | None:intergenic | 40.0% | |
| AGTGATGAGTAGATATCAGC+AGG | + | chr7_2:16716984-16717003 | Msa1050780:intron | 40.0% | |
| GAAACAACTGATGCCAAATG+TGG | - | chr7_2:16717310-16717329 | None:intergenic | 40.0% | |
| ! | CATTTGGCATCAGTTGTTTC+TGG | + | chr7_2:16717310-16717329 | Msa1050780:CDS | 40.0% |
| !! | GCATCAGTTGTTTCTGGTAA+TGG | + | chr7_2:16717316-16717335 | Msa1050780:CDS | 40.0% |
| AGTTAACCTTAACATGCCAG+TGG | - | chr7_2:16717399-16717418 | None:intergenic | 40.0% | |
| CTGAACAACCAAGTTCCAAT+CGG | - | chr7_2:16717482-16717501 | None:intergenic | 40.0% | |
| TGAGTCAGATTGTCGAAGTT+TGG | - | chr7_2:16717508-16717527 | None:intergenic | 40.0% | |
| CAAGAAGCAAACAAACAAGG+TGG | - | chr7_2:16717590-16717609 | None:intergenic | 40.0% | |
| !! | AAGTAATGGATTTCGACACC+TGG | + | chr7_2:16717758-16717777 | Msa1050780:intron | 40.0% |
| ACTTGGTCAATGGATATACC+AGG | - | chr7_2:16717779-16717798 | None:intergenic | 40.0% | |
| CAGATGATACAGCAATGCTT+TGG | + | chr7_2:16717930-16717949 | Msa1050780:intron | 40.0% | |
| GATGATACAGCAATGCTTTG+GGG | + | chr7_2:16717932-16717951 | Msa1050780:intron | 40.0% | |
| !! | CTTTCACTTTTGATAAGGGC+TGG | + | chr7_2:16718041-16718060 | Msa1050780:CDS | 40.0% |
| GAACCAGTATTAGGTAACCA+TGG | - | chr7_2:16718130-16718149 | None:intergenic | 40.0% | |
| !! | GGTTACCTAATACTGGTTCT+CGG | + | chr7_2:16718131-16718150 | Msa1050780:CDS | 40.0% |
| CACAAATATGACGCCAAAAC+TGG | - | chr7_2:16718279-16718298 | None:intergenic | 40.0% | |
| AGAGGGACTGACTATATACA+CGG | + | chr7_2:16718325-16718344 | Msa1050780:three_prime_UTR | 40.0% | |
| CATAGGATTCAGCATATTGG+TGG | + | chr7_2:16718388-16718407 | Msa1050780:three_prime_UTR | 40.0% | |
| AGAGAGAGAGTGGAAGAATG+TGG | - | chr7_2:16714626-16714645 | None:intergenic | 45.0% | |
| !! | GGTTGTTGGTTCAAGATCTG+TGG | - | chr7_2:16714678-16714697 | None:intergenic | 45.0% |
| CACACTCCAAACTCCAAAAG+GGG | - | chr7_2:16715202-16715221 | None:intergenic | 45.0% | |
| AGGATGGACATGGGCAAAAA+AGG | + | chr7_2:16716235-16716254 | Msa1050780:CDS | 45.0% | |
| ATGGACATGGGCAAAAAAGG+AGG | + | chr7_2:16716238-16716257 | Msa1050780:CDS | 45.0% | |
| GGGCAAAAAAGGAGGTAATC+TGG | + | chr7_2:16716246-16716265 | Msa1050780:CDS | 45.0% | |
| ! | GGAGGTAATCTGGAGTATGA+TGG | + | chr7_2:16716256-16716275 | Msa1050780:CDS | 45.0% |
| ! | TTGCTGATTGTAAGGCGTTC+CGG | - | chr7_2:16716375-16716394 | None:intergenic | 45.0% |
| ATTGCGAATTGCTGCAAAGG+TGG | + | chr7_2:16716395-16716414 | Msa1050780:CDS | 45.0% | |
| AAGGTGGTGTGCTTAGTTCA+TGG | + | chr7_2:16716411-16716430 | Msa1050780:CDS | 45.0% | |
| AGGTGGTGTGCTTAGTTCAT+GGG | + | chr7_2:16716412-16716431 | Msa1050780:CDS | 45.0% | |
| AAGATCCTACCATGGCAGTT+GGG | + | chr7_2:16716438-16716457 | Msa1050780:CDS | 45.0% | |
| !! | CAAATCAGTGTTGGTAGAGC+CGG | + | chr7_2:16716467-16716486 | Msa1050780:CDS | 45.0% |
| AAATTTCACCTTGAGTGCCC+CGG | + | chr7_2:16716520-16716539 | Msa1050780:CDS | 45.0% | |
| ! | TGAGTCACTCTCCTTTTGTC+TGG | - | chr7_2:16716602-16716621 | None:intergenic | 45.0% |
| CAGAGTAACTCATCACAGTC+CGG | + | chr7_2:16717179-16717198 | Msa1050780:CDS | 45.0% | |
| AGAGTAACTCATCACAGTCC+GGG | + | chr7_2:16717180-16717199 | Msa1050780:CDS | 45.0% | |
| CAGTCCAAATACGCCACATT+TGG | + | chr7_2:16717294-16717313 | Msa1050780:intron | 45.0% | |
| GATGCCAAATGTGGCGTATT+TGG | - | chr7_2:16717301-16717320 | None:intergenic | 45.0% | |
| ! | CCTTAACATGCCAGTGGATT+CGG | - | chr7_2:16717393-16717412 | None:intergenic | 45.0% |
| ! | TGGGTTGACGACAATCTAAG+TGG | + | chr7_2:16717679-16717698 | Msa1050780:intron | 45.0% |
| CGGATTGAACATTGCCACTA+GGG | - | chr7_2:16717994-16718013 | None:intergenic | 45.0% | |
| TCGGATTGAACATTGCCACT+AGG | - | chr7_2:16717995-16718014 | None:intergenic | 45.0% | |
| ATCCTTTCGGAAGAGTAGCT+CGG | - | chr7_2:16718014-16718033 | None:intergenic | 45.0% | |
| CGTTGAAGTAGATCCTTCGA+GGG | - | chr7_2:16718072-16718091 | None:intergenic | 45.0% | |
| CCTCGAAGGATCTACTTCAA+CGG | + | chr7_2:16718070-16718089 | Msa1050780:CDS | 45.0% | |
| AACCATGGATAAGCATCAGG+AGG | - | chr7_2:16718115-16718134 | None:intergenic | 45.0% | |
| GGTAACCATGGATAAGCATC+AGG | - | chr7_2:16718118-16718137 | None:intergenic | 45.0% | |
| TCTTGCCGAGAACCAGTATT+AGG | - | chr7_2:16718139-16718158 | None:intergenic | 45.0% | |
| !! | TAATACTGGTTCTCGGCAAG+AGG | + | chr7_2:16718138-16718157 | Msa1050780:CDS | 45.0% |
| TGCTTTAGTAATGGCCTCCT+TGG | + | chr7_2:16718171-16718190 | Msa1050780:CDS | 45.0% | |
| GAATACTAAGACTGCCAAGG+AGG | - | chr7_2:16718188-16718207 | None:intergenic | 45.0% | |
| !! | TTGGTTTTCAAGGCGATCAG+AGG | + | chr7_2:16718307-16718326 | Msa1050780:three_prime_UTR | 45.0% |
| !! | TGGTTTTCAAGGCGATCAGA+GGG | + | chr7_2:16718308-16718327 | Msa1050780:three_prime_UTR | 45.0% |
| GAGGGACTGACTATATACAC+GGG | + | chr7_2:16718326-16718345 | Msa1050780:three_prime_UTR | 45.0% | |
| GCATCCCAGGATTGTTACAT+AGG | + | chr7_2:16718371-16718390 | Msa1050780:three_prime_UTR | 45.0% | |
| !!! | CTTTTTTTTTTTTTTTTTTT+TGG | + | chr7_2:16715104-16715123 | Msa1050780:intron | 5.0% |
| GAAGAGAGAGAGAGAGAGAG+TGG | - | chr7_2:16714636-16714655 | None:intergenic | 50.0% | |
| TGTGGGAGTTATGGGGTTGT+TGG | - | chr7_2:16714692-16714711 | None:intergenic | 50.0% | |
| CTGGTCACTAGGATGGACAT+GGG | + | chr7_2:16716226-16716245 | Msa1050780:CDS | 50.0% | |
| GGATCACAGACCACAGAACA+AGG | + | chr7_2:16716278-16716297 | Msa1050780:CDS | 50.0% | |
| ! | TGCTGATTGTAAGGCGTTCC+GGG | - | chr7_2:16716374-16716393 | None:intergenic | 50.0% |
| ATGGGCTCAAGATCCTACCA+TGG | + | chr7_2:16716430-16716449 | Msa1050780:CDS | 50.0% | |
| CAAGATCCTACCATGGCAGT+TGG | + | chr7_2:16716437-16716456 | Msa1050780:CDS | 50.0% | |
| AGATCCTACCATGGCAGTTG+GGG | + | chr7_2:16716439-16716458 | Msa1050780:CDS | 50.0% | |
| ! | GGGGCGTTTCAAATCAGTGT+TGG | + | chr7_2:16716458-16716477 | Msa1050780:CDS | 50.0% |
| AATTTCACCTTGAGTGCCCC+GGG | + | chr7_2:16716521-16716540 | Msa1050780:CDS | 50.0% | |
| ACAAGTATAACCAGGTCCCG+GGG | - | chr7_2:16716540-16716559 | None:intergenic | 50.0% | |
| CACAAGTATAACCAGGTCCC+GGG | - | chr7_2:16716541-16716560 | None:intergenic | 50.0% | |
| CCACAAGTATAACCAGGTCC+CGG | - | chr7_2:16716542-16716561 | None:intergenic | 50.0% | |
| CGGGACCTGGTTATACTTGT+GGG | + | chr7_2:16716540-16716559 | Msa1050780:CDS | 50.0% | |
| ACCTGGTTATACTTGTGGGC+CGG | + | chr7_2:16716544-16716563 | Msa1050780:CDS | 50.0% | |
| ACATGTTGGGCAGGGTACAA+TGG | - | chr7_2:16717147-16717166 | None:intergenic | 50.0% | |
| CGGACTGTGATGAGTTACTC+TGG | - | chr7_2:16717181-16717200 | None:intergenic | 50.0% | |
| ! | ACATGCCAGTGGATTCGGAT+CGG | - | chr7_2:16717388-16717407 | None:intergenic | 50.0% |
| CCGAATCCACTGGCATGTTA+AGG | + | chr7_2:16717390-16717409 | Msa1050780:CDS | 50.0% | |
| CAAGGAATACTGGCGTGTGA+AGG | + | chr7_2:16717420-16717439 | Msa1050780:CDS | 50.0% | |
| CTTAATCATGCTGGCCCTAG+TGG | + | chr7_2:16717977-16717996 | Msa1050780:CDS | 50.0% | |
| ATCCGAGCTACTCTTCCGAA+AGG | + | chr7_2:16718009-16718028 | Msa1050780:CDS | 50.0% | |
| CCGTTGAAGTAGATCCTTCG+AGG | - | chr7_2:16718073-16718092 | None:intergenic | 50.0% | |
| CATGGATAAGCATCAGGAGG+TGG | - | chr7_2:16718112-16718131 | None:intergenic | 50.0% | |
| CACCTCCTGATGCTTATCCA+TGG | + | chr7_2:16718110-16718129 | Msa1050780:CDS | 50.0% | |
| GGACTGACTATATACACGGG+TGG | + | chr7_2:16718329-16718348 | Msa1050780:three_prime_UTR | 50.0% | |
| ! | GAGATTTGCTCATGCATCCC+AGG | + | chr7_2:16718358-16718377 | Msa1050780:three_prime_UTR | 50.0% |
| CAGGAGGAGACTGACTGGAT+GGG | - | chr7_2:16714588-16714607 | None:intergenic | 55.0% | |
| ACAGGAGGAGACTGACTGGA+TGG | - | chr7_2:16714589-16714608 | None:intergenic | 55.0% | |
| TGGAACAGGAGGAGACTGAC+TGG | - | chr7_2:16714593-16714612 | None:intergenic | 55.0% | |
| TATCGTCACATCGCTTCCCC+TGG | + | chr7_2:16716203-16716222 | Msa1050780:CDS | 55.0% | |
| TCCATCCTAGTGACCAGCCA+GGG | - | chr7_2:16716223-16716242 | None:intergenic | 55.0% | |
| GCTGGTCACTAGGATGGACA+TGG | + | chr7_2:16716225-16716244 | Msa1050780:CDS | 55.0% | |
| TTGAAACGCCCCAACTGCCA+TGG | - | chr7_2:16716450-16716469 | None:intergenic | 55.0% | |
| CCGGGACCTGGTTATACTTG+TGG | + | chr7_2:16716539-16716558 | Msa1050780:CDS | 55.0% | |
| CGACGTGTCAGTGTTGTGTC+CGG | + | chr7_2:16716933-16716952 | Msa1050780:intron | 55.0% | |
| GAGAGGGAGACACAGCAAGT+GGG | - | chr7_2:16717107-16717126 | None:intergenic | 55.0% | |
| TGAGAGGGAGACACAGCAAG+TGG | - | chr7_2:16717108-16717127 | None:intergenic | 55.0% | |
| CCACATGCACATGTTGGGCA+GGG | - | chr7_2:16717155-16717174 | None:intergenic | 55.0% | |
| GGCAGCCACATGCACATGTT+GGG | - | chr7_2:16717160-16717179 | None:intergenic | 55.0% | |
| TGGCAGCCACATGCACATGT+TGG | - | chr7_2:16717161-16717180 | None:intergenic | 55.0% | |
| TGTGTCCGATCCGAATCCAC+TGG | + | chr7_2:16717380-16717399 | Msa1050780:CDS | 55.0% | |
| CCATCCTAGTGACCAGCCAG+GGG | - | chr7_2:16716222-16716241 | None:intergenic | 60.0% | |
| GTCCATCCTAGTGACCAGCC+AGG | - | chr7_2:16716224-16716243 | None:intergenic | 60.0% | |
| AACGCCCCAACTGCCATGGT+AGG | - | chr7_2:16716446-16716465 | None:intergenic | 60.0% | |
| GCCGGCCCACAAGTATAACC+AGG | - | chr7_2:16716548-16716567 | None:intergenic | 60.0% | |
| CCCTGCCCAACATGTGCATG+TGG | + | chr7_2:16717152-16717171 | Msa1050780:CDS | 60.0% | |
| GCCACATGCACATGTTGGGC+AGG | - | chr7_2:16717156-16717175 | None:intergenic | 60.0% | |
| GTCACATCGCTTCCCCTGGC+TGG | + | chr7_2:16716207-16716226 | Msa1050780:CDS | 65.0% | |
| ! | GCTTCCCCTGGCTGGTCACT+AGG | + | chr7_2:16716215-16716234 | Msa1050780:CDS | 65.0% |
| ! | CCCCTGGCTGGTCACTAGGA+TGG | + | chr7_2:16716219-16716238 | Msa1050780:CDS | 65.0% |
| AGGGCTGGGCTTTCCCTCGA+AGG | + | chr7_2:16718056-16718075 | Msa1050780:CDS | 65.0% | |
| ACCTTGAGTGCCCCGGGACC+TGG | + | chr7_2:16716527-16716546 | Msa1050780:CDS | 70.0% | |
| ! | ACCAGGTCCCGGGGCACTCA+AGG | - | chr7_2:16716531-16716550 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 16714560 | 16718566 | 16714560 | ID=Msa1050780;Name=Msa1050780 |
| chr7_2 | mRNA | 16714560 | 16718566 | 16714560 | ID=Msa1050780-mRNA-1;Parent=Msa1050780;Name=Msa1050780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|1|1|6|344|445 |
| chr7_2 | exon | 16714560 | 16714811 | 16714560 | ID=Msa1050780-mRNA-1:exon:3744;Parent=Msa1050780-mRNA-1 |
| chr7_2 | exon | 16715729 | 16715808 | 16715729 | ID=Msa1050780-mRNA-1:exon:3745;Parent=Msa1050780-mRNA-1 |
| chr7_2 | exon | 16716173 | 16716629 | 16716173 | ID=Msa1050780-mRNA-1:exon:3746;Parent=Msa1050780-mRNA-1 |
| chr7_2 | exon | 16717054 | 16717213 | 16717054 | ID=Msa1050780-mRNA-1:exon:3747;Parent=Msa1050780-mRNA-1 |
| chr7_2 | exon | 16717297 | 16717574 | 16717297 | ID=Msa1050780-mRNA-1:exon:3748;Parent=Msa1050780-mRNA-1 |
| chr7_2 | exon | 16717933 | 16718566 | 16717933 | ID=Msa1050780-mRNA-1:exon:3749;Parent=Msa1050780-mRNA-1 |
| chr7_2 | five_prime_UTR | 16714560 | 16714738 | 16714560 | ID=Msa1050780-mRNA-1:five_prime_utr;Parent=Msa1050780-mRNA-1 |
| chr7_2 | CDS | 16714739 | 16714811 | 16714739 | ID=Msa1050780-mRNA-1:cds;Parent=Msa1050780-mRNA-1 |
| chr7_2 | CDS | 16715729 | 16715808 | 16715729 | ID=Msa1050780-mRNA-1:cds;Parent=Msa1050780-mRNA-1 |
| chr7_2 | CDS | 16716173 | 16716629 | 16716173 | ID=Msa1050780-mRNA-1:cds;Parent=Msa1050780-mRNA-1 |
| chr7_2 | CDS | 16717054 | 16717213 | 16717054 | ID=Msa1050780-mRNA-1:cds;Parent=Msa1050780-mRNA-1 |
| chr7_2 | CDS | 16717297 | 16717574 | 16717297 | ID=Msa1050780-mRNA-1:cds;Parent=Msa1050780-mRNA-1 |
| chr7_2 | CDS | 16717933 | 16718222 | 16717933 | ID=Msa1050780-mRNA-1:cds;Parent=Msa1050780-mRNA-1 |
| chr7_2 | three_prime_UTR | 16718223 | 16718566 | 16718223 | ID=Msa1050780-mRNA-1:three_prime_utr;Parent=Msa1050780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
