Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460820 | AES63128.1 | 98.133 | 375 | 1 | 1 | 130 | 498 | 1 | 375 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460820 | G7IL59 | 98.133 | 375 | 1 | 1 | 130 | 498 | 1 | 375 | 0.0 | 738 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1351640 | Msa1460820 | 0.987280 | 1.083667e-169 | -8.615850e-47 |
| Msa1375060 | Msa1460820 | 0.998744 | 5.042029e-275 | -8.615850e-47 |
| Msa1392330 | Msa1460820 | 0.999423 | 1.760685e-310 | -8.615850e-47 |
| Msa1452090 | Msa1460820 | 0.813831 | 2.097553e-51 | -8.615850e-47 |
| Msa0131050 | Msa1460820 | 0.842611 | 2.326891e-58 | -8.615850e-47 |
| Msa0138390 | Msa1460820 | 0.836494 | 9.058049e-57 | -8.615850e-47 |
| Msa0146990 | Msa1460820 | 0.806243 | 9.043910e-50 | -8.615850e-47 |
| Msa0376450 | Msa1460820 | 0.815945 | 7.125337e-52 | -8.615850e-47 |
| Msa0465800 | Msa1460820 | -0.812212 | 4.748575e-51 | -8.615850e-47 |
| Msa0471720 | Msa1460820 | 0.817451 | 3.276224e-52 | -8.615850e-47 |
| Msa0472740 | Msa1460820 | -0.814345 | 1.615546e-51 | -8.615850e-47 |
| Msa1009440 | Msa1460820 | 0.816114 | 6.533141e-52 | -8.615850e-47 |
| Msa1050780 | Msa1460820 | 0.807319 | 5.355771e-50 | -8.615850e-47 |
| Msa1098180 | Msa1460820 | 0.887366 | 1.520685e-72 | -8.615850e-47 |
| Msa0240450 | Msa1460820 | 0.832588 | 8.677495e-56 | -8.615850e-47 |
| Msa0270030 | Msa1460820 | 0.986310 | 2.314864e-166 | -8.615850e-47 |
| Msa1119250 | Msa1460820 | 0.848392 | 6.312937e-60 | -8.615850e-47 |
| Msa1119300 | Msa1460820 | 0.851904 | 6.547475e-61 | -8.615850e-47 |
| Msa1138240 | Msa1460820 | 0.869760 | 2.432641e-66 | -8.615850e-47 |
| Msa0516510 | Msa1460820 | 0.813900 | 2.025105e-51 | -8.615850e-47 |
| Msa0967650 | Msa1460820 | 0.818007 | 2.453444e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460820 | MtrunA17_Chr2g0276811 | 85.067 | 375 | 2 | 2 | 130 | 498 | 1 | 327 | 0.0 | 594 |
| Msa1460820 | MtrunA17_Chr4g0042531 | 63.784 | 370 | 90 | 3 | 105 | 441 | 4 | 362 | 1.05e-157 | 452 |
| Msa1460820 | MtrunA17_Chr4g0042541 | 65.217 | 368 | 83 | 4 | 105 | 438 | 4 | 360 | 1.74e-157 | 452 |
| Msa1460820 | MtrunA17_Chr2g0276801 | 89.000 | 100 | 9 | 2 | 1 | 99 | 13 | 111 | 1.46e-51 | 171 |
| Msa1460820 | MtrunA17_Chr3g0127551 | 29.431 | 299 | 164 | 7 | 132 | 396 | 7 | 292 | 1.89e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460820 | AT1G57680.3 | 49.429 | 350 | 139 | 4 | 130 | 442 | 1 | 349 | 3.11e-96 | 295 |
| Msa1460820 | AT1G57680.1 | 49.429 | 350 | 139 | 4 | 130 | 442 | 1 | 349 | 3.11e-96 | 295 |
| Msa1460820 | AT1G57680.2 | 49.429 | 350 | 139 | 4 | 130 | 442 | 1 | 349 | 3.11e-96 | 295 |
Find 127 sgRNAs with CRISPR-Local
Find 433 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCACTTGTATGTTGTTC+TGG | 0.136495 | tig0041095:-6188 | Msa1460820:CDS |
| CCATTATTAGTTATTGATAT+TGG | 0.198785 | tig0041095:-7088 | Msa1460820:intron |
| CACAAGCCCCAGAGGATTTC+TGG | 0.199571 | tig0041095:-7057 | Msa1460820:CDS |
| GTTGAATAAAACCTTGATTA+TGG | 0.209985 | tig0041095:+6870 | Msa1460820:intergenic |
| CAAGACAACAACTACGACTA+TGG | 0.236213 | tig0041095:-11778 | Msa1460820:CDS |
| TTACTTAGTACCGTTCTTCT+TGG | 0.246463 | tig0041095:-6419 | Msa1460820:CDS |
| TTTGTGTTTCCTTCCATTAA+GGG | 0.263956 | tig0041095:-6285 | Msa1460820:CDS |
| TGTTTATGGCATTCCGGTTC+TGG | 0.270261 | tig0041095:-11683 | Msa1460820:CDS |
| TCTGTTTCAGAACCTGTTTA+TGG | 0.277422 | tig0041095:-11697 | Msa1460820:CDS |
| GACGTGCCCTTCACTTAAAA+TGG | 0.278233 | tig0041095:-6751 | Msa1460820:CDS |
| ACTTCTTCAAGCCATGAAAA+TGG | 0.296134 | tig0041095:+11805 | Msa1460820:intergenic |
| AGCTGATGGCTGGGTGGTAC+TGG | 0.305412 | tig0041095:+11840 | Msa1460820:intergenic |
| ACCTCAGTTAGACAAGAATA+AGG | 0.305847 | tig0041095:-6519 | Msa1460820:CDS |
| GGGGTCTAGGTGAAATTATT+AGG | 0.311728 | tig0041095:-6787 | Msa1460820:intron |
| CTGGAATTATGAGCAGAAAA+TGG | 0.319368 | tig0041095:-6619 | Msa1460820:CDS |
| GAATGCTTCGGCAGCAAATC+TGG | 0.324517 | tig0041095:+6979 | Msa1460820:intergenic |
| TTGCACTTGTATGTTGTTCT+GGG | 0.341889 | tig0041095:-6187 | Msa1460820:CDS |
| CATGCGTGGAATCTGTATTT+CGG | 0.345778 | tig0041095:-7015 | Msa1460820:CDS |
| CCCGGATCACCGTCACTTCC+AGG | 0.354198 | tig0041095:-5861 | Msa1460820:CDS |
| GTAAGTGTGGAGCTGATGGC+TGG | 0.370131 | tig0041095:+11830 | Msa1460820:intergenic |
| TCAACAAAGGTTTACAGAAA+AGG | 0.373868 | tig0041095:-6331 | Msa1460820:CDS |
| ATGCGTGGAATCTGTATTTC+GGG | 0.375518 | tig0041095:-7014 | Msa1460820:CDS |
| CAACAAAGGTTTACAGAAAA+GGG | 0.378116 | tig0041095:-6330 | Msa1460820:CDS |
| CAAACCAAGAAGAATCAAAA+TGG | 0.383211 | tig0041095:+6931 | Msa1460820:intergenic |
| CTCTCTGTCAGTGCCAGAAC+CGG | 0.384564 | tig0041095:+11670 | Msa1460820:intergenic |
| GGGTGGTGTTGCACTACGGC+TGG | 0.385070 | tig0041095:+5881 | Msa1460820:intergenic |
| ACCTGGAAGTGACGGTGATC+CGG | 0.386511 | tig0041095:+5860 | Msa1460820:intergenic |
| TATCACTAGCCAGAGTCATT+TGG | 0.389755 | tig0041095:-6045 | Msa1460820:CDS |
| AGTTGCAGATTGTTTAGCTC+TGG | 0.392033 | tig0041095:-6135 | Msa1460820:CDS |
| AAGTCAGGATAATGGCAAAA+AGG | 0.395416 | tig0041095:+6396 | Msa1460820:intergenic |
| GAAAAGGGTGTTGCTTCAAC+TGG | 0.400149 | tig0041095:-5933 | Msa1460820:CDS |
| CCTGGAAGTGACGGTGATCC+GGG | 0.407160 | tig0041095:+5861 | Msa1460820:intergenic |
| ATTCATGTTGCCACCAGAAA+TGG | 0.409650 | tig0041095:-11752 | Msa1460820:CDS |
| ATGGCACAATAACTTGGGTT+GGG | 0.415265 | tig0041095:+5823 | Msa1460820:intergenic |
| CAATGGTGGCACGGTGGATG+TGG | 0.426793 | tig0041095:+11877 | Msa1460820:intergenic |
| CACCATCTTGTGCTTGACTT+GGG | 0.429863 | tig0041095:+11722 | Msa1460820:intergenic |
| AGATTTGCTGCCGAAGCATT+CGG | 0.431030 | tig0041095:-6977 | Msa1460820:CDS |
| AACTTGGGTTGGGGATTGCA+TGG | 0.433060 | tig0041095:+5833 | Msa1460820:intergenic |
| AATGACTCTGGCTAGTGATA+AGG | 0.433949 | tig0041095:+6048 | Msa1460820:intergenic |
| ACACCATCTTGTGCTTGACT+TGG | 0.438856 | tig0041095:+11721 | Msa1460820:intergenic |
| ATGACTCTGGCTAGTGATAA+GGG | 0.438994 | tig0041095:+6049 | Msa1460820:intergenic |
| CCGTGCACCCTTGCAGAGGT+TGG | 0.447505 | tig0041095:-6645 | Msa1460820:CDS |
| CGCTCTCGAATCCATAATCA+AGG | 0.454403 | tig0041095:-6881 | Msa1460820:intron |
| GCTGCTATGGCACAATAACT+TGG | 0.457884 | tig0041095:+5817 | Msa1460820:intergenic |
| CCCTTGCAGAGGTTGGAGAC+TGG | 0.459243 | tig0041095:-6638 | Msa1460820:CDS |
| GAAATACAAGTGTGAGGAAG+AGG | 0.466208 | tig0041095:+6672 | Msa1460820:intergenic |
| AGAACCTGTTTATGGCATTC+CGG | 0.468495 | tig0041095:-11689 | Msa1460820:CDS |
| CATGGATACCAGAAATCCTC+TGG | 0.469355 | tig0041095:+7049 | Msa1460820:intergenic |
| GAAGAACGGTACTAAGTAAA+GGG | 0.471576 | tig0041095:+6423 | Msa1460820:intergenic |
| CTTCGGCAGCAAATCTGGAC+AGG | 0.473877 | tig0041095:+6984 | Msa1460820:intergenic |
| AGAGCTAAACAATCTGCAAC+TGG | 0.476529 | tig0041095:+6137 | Msa1460820:intergenic |
| AGAACCGGAATGCCATAAAC+AGG | 0.478656 | tig0041095:+11685 | Msa1460820:intergenic |
| GCACTGACAGAGAGATCAAC+AGG | 0.479490 | tig0041095:-11661 | Msa1460820:intron |
| ACCATCTTGTGCTTGACTTG+GGG | 0.487601 | tig0041095:+11723 | Msa1460820:intergenic |
| GTTGCAGATTGTTTAGCTCT+GGG | 0.488179 | tig0041095:-6134 | Msa1460820:CDS |
| AGAAGAACGGTACTAAGTAA+AGG | 0.495985 | tig0041095:+6422 | Msa1460820:intergenic |
| GGGGATTGCATGGGCCAACC+TGG | 0.496851 | tig0041095:+5843 | Msa1460820:intergenic |
| TATGGCACAATAACTTGGGT+TGG | 0.509350 | tig0041095:+5822 | Msa1460820:intergenic |
| AAGGTAGGAAGTCAGGATAA+TGG | 0.511696 | tig0041095:+6388 | Msa1460820:intergenic |
| TGTCACCACACCGAATGCTT+CGG | 0.512183 | tig0041095:+6967 | Msa1460820:intergenic |
| TGGCACAATAACTTGGGTTG+GGG | 0.518698 | tig0041095:+5824 | Msa1460820:intergenic |
| CCTCAGTTAGACAAGAATAA+GGG | 0.519352 | tig0041095:-6518 | Msa1460820:CDS |
| TAAGTGTGGAGCTGATGGCT+GGG | 0.529852 | tig0041095:+11831 | Msa1460820:intergenic |
| GAAAATGCCCGGCTTAGTCC+TGG | 0.529972 | tig0041095:-6008 | Msa1460820:CDS |
| CATTATCTTCCAAATGACTC+TGG | 0.530554 | tig0041095:+6036 | Msa1460820:intergenic |
| CCAACCTCTGCAAGGGTGCA+CGG | 0.530849 | tig0041095:+6645 | Msa1460820:intergenic |
| GCTTCAAACATAAAATGCTC+AGG | 0.535570 | tig0041095:+6230 | Msa1460820:intergenic |
| AAAAGCTGAAGAAGAAACAT+TGG | 0.535607 | tig0041095:+6557 | Msa1460820:intergenic |
| GGTGGTGTTGCACTACGGCT+GGG | 0.535611 | tig0041095:+5882 | Msa1460820:intergenic |
| TGATGGCTGGGTGGTACTGG+TGG | 0.539099 | tig0041095:+11843 | Msa1460820:intergenic |
| TCCTCCGTGCACCCTTGCAG+AGG | 0.540397 | tig0041095:-6649 | Msa1460820:CDS |
| ACTTGGGTTGGGGATTGCAT+GGG | 0.547759 | tig0041095:+5834 | Msa1460820:intergenic |
| AATACCTACCAGGACTAAGC+CGG | 0.548682 | tig0041095:+6000 | Msa1460820:intergenic |
| TCCAGTCTCCAACCTCTGCA+AGG | 0.553487 | tig0041095:+6637 | Msa1460820:intergenic |
| CACTACGGCTGGGAGAGAAA+AGG | 0.561488 | tig0041095:+5892 | Msa1460820:intergenic |
| ATCTACAAGACTTGGAAGCT+AGG | 0.563095 | tig0041095:-6109 | Msa1460820:CDS |
| ATCCGGGTGGTGTTGCACTA+CGG | 0.565464 | tig0041095:+5877 | Msa1460820:intergenic |
| CCATCTTGTGCTTGACTTGG+GGG | 0.568482 | tig0041095:+11724 | Msa1460820:intergenic |
| AGCCGTAGTGCAACACCACC+CGG | 0.570029 | tig0041095:-5879 | Msa1460820:CDS |
| TGCCCTTCACTTAAAATGGA+AGG | 0.570691 | tig0041095:-6747 | Msa1460820:CDS |
| TAAGTAAAGGGTAAGTACAC+AGG | 0.570980 | tig0041095:+6435 | Msa1460820:intergenic |
| ATGTTATATTGTATCCAACA+TGG | 0.571201 | tig0041095:-6711 | Msa1460820:CDS |
| AAGACAACAACTACGACTAT+GGG | 0.571778 | tig0041095:-11777 | Msa1460820:CDS |
| TCTGGGAAATCTACAAGACT+TGG | 0.572100 | tig0041095:-6117 | Msa1460820:CDS |
| ATGGATACCAGAAATCCTCT+GGG | 0.580053 | tig0041095:+7050 | Msa1460820:intergenic |
| TTCGGCAGCAAATCTGGACA+GGG | 0.581106 | tig0041095:+6985 | Msa1460820:intergenic |
| GATTCATCTGAATACCTACC+AGG | 0.582625 | tig0041095:+5990 | Msa1460820:intergenic |
| TTGAAATTAGTCATCAACAA+AGG | 0.583602 | tig0041095:-6344 | Msa1460820:CDS |
| TGTTATATTGTATCCAACAT+GGG | 0.587232 | tig0041095:-6710 | Msa1460820:CDS |
| ATACCTACCAGGACTAAGCC+GGG | 0.594514 | tig0041095:+6001 | Msa1460820:intergenic |
| GATCACCGTCACTTCCAGGT+TGG | 0.595185 | tig0041095:-5857 | Msa1460820:CDS |
| TCAGATGAATCAACAAAGCG+TGG | 0.595190 | tig0041095:-5978 | Msa1460820:CDS |
| ACGCATGCTCTCTGACAGCA+TGG | 0.601326 | tig0041095:+7031 | Msa1460820:intergenic |
| CCAGTCTCCAACCTCTGCAA+GGG | 0.602446 | tig0041095:+6638 | Msa1460820:intergenic |
| GGAGGTAAGTGTGGAGCTGA+TGG | 0.602790 | tig0041095:+11826 | Msa1460820:intergenic |
| CTGCTATGGCACAATAACTT+GGG | 0.603852 | tig0041095:+5818 | Msa1460820:intergenic |
| TGGTGGAGCAAGAGCAACAA+TGG | 0.604648 | tig0041095:+11860 | Msa1460820:intergenic |
| ACTTGGAAGCTAGGACTAGG+AGG | 0.606767 | tig0041095:-6100 | Msa1460820:CDS |
| ATGCTGTCAGAGAGCATGCG+TGG | 0.609403 | tig0041095:-7029 | Msa1460820:CDS |
| CTTGATTATGGATTCGAGAG+CGG | 0.616039 | tig0041095:+6882 | Msa1460820:intergenic |
| TGGTGGCACGGTGGATGTGG+AGG | 0.618087 | tig0041095:+11880 | Msa1460820:intergenic |
| CCCTTATTCTTGTCTAACTG+AGG | 0.619051 | tig0041095:+6518 | Msa1460820:intergenic |
| GCTGAAGAAGAAACATTGGA+AGG | 0.623753 | tig0041095:+6561 | Msa1460820:intergenic |
| AAGTAAAGGGTAAGTACACA+GGG | 0.626323 | tig0041095:+6436 | Msa1460820:intergenic |
| CAAGAGCAACAATGGTGGCA+CGG | 0.627648 | tig0041095:+11868 | Msa1460820:intergenic |
| ATAATGTTGAGGAAAATGCC+CGG | 0.641939 | tig0041095:-6019 | Msa1460820:CDS |
| AAGACTTGGAAGCTAGGACT+AGG | 0.643546 | tig0041095:-6103 | Msa1460820:CDS |
| TCTTCAAGCCATGAAAATGG+AGG | 0.647955 | tig0041095:+11808 | Msa1460820:intergenic |
| AGGTTCTGCAAATCCCATGT+TGG | 0.653113 | tig0041095:+6697 | Msa1460820:intergenic |
| CATGAAAATGGAGGTAAGTG+TGG | 0.654055 | tig0041095:+11817 | Msa1460820:intergenic |
| CTAAACAATCTGCAACTGGA+CGG | 0.656325 | tig0041095:+6141 | Msa1460820:intergenic |
| TCATTTGGAAGATAATGTTG+AGG | 0.658087 | tig0041095:-6030 | Msa1460820:CDS |
| GTGTGGAGCTGATGGCTGGG+TGG | 0.664412 | tig0041095:+11834 | Msa1460820:intergenic |
| CAGATGAATCAACAAAGCGT+GGG | 0.669113 | tig0041095:-5977 | Msa1460820:CDS |
| TCGGCAGCAAATCTGGACAG+GGG | 0.670257 | tig0041095:+6986 | Msa1460820:intergenic |
| ATGGGCCAACCTGGAAGTGA+CGG | 0.673283 | tig0041095:+5852 | Msa1460820:intergenic |
| AAGAAAAGCCAAGAAAACAA+AGG | 0.675305 | tig0041095:+6208 | Msa1460820:intergenic |
| ACAAGTGTGAGGAAGAGGCA+AGG | 0.681559 | tig0041095:+6677 | Msa1460820:intergenic |
| TGGAGCAAGAGCAACAATGG+TGG | 0.690481 | tig0041095:+11863 | Msa1460820:intergenic |
| GCTGTGCTTGTAAAATAATG+CGG | 0.697719 | tig0041095:+6479 | Msa1460820:intergenic |
| GGAGGAGAAATACAAGTGTG+AGG | 0.697754 | tig0041095:+6666 | Msa1460820:intergenic |
| TGCTGCCGAAGCATTCGGTG+TGG | 0.699184 | tig0041095:-6972 | Msa1460820:CDS |
| GAGCAACAATGGTGGCACGG+TGG | 0.703864 | tig0041095:+11871 | Msa1460820:intergenic |
| ACCTCTGCAAGGGTGCACGG+AGG | 0.720964 | tig0041095:+6648 | Msa1460820:intergenic |
| ATGCCCGGCTTAGTCCTGGT+AGG | 0.725216 | tig0041095:-6004 | Msa1460820:CDS |
| GGAAGTGACGGTGATCCGGG+TGG | 0.749090 | tig0041095:+5864 | Msa1460810:intergenic |
| TGGATACCAGAAATCCTCTG+GGG | 0.759997 | tig0041095:+7051 | Msa1460810:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTAGATACATATTT+GGG | + | tig0041095:6562-6581 | Msa1460820:intergenic | 10.0% |
| !!! | AATTTTTTTAGATACATATT+TGG | + | tig0041095:6563-6582 | Msa1460820:intergenic | 10.0% |
| !!! | ATCAATTTTTAAATTTTGAA+AGG | - | tig0041095:8500-8519 | Msa1460820:intron | 10.0% |
| !!! | TCAATTTTTAAATTTTGAAA+GGG | - | tig0041095:8501-8520 | Msa1460820:intron | 10.0% |
| !!! | TTCAAATTTCTAGTAAATAA+CGG | + | tig0041095:6251-6270 | Msa1460820:intergenic | 15.0% |
| !!! | TAAAATTGTTGATTACAAAA+AGG | - | tig0041095:7088-7107 | Msa1460820:intron | 15.0% |
| !!! | TCATAATTTTTTTTCTTTTG+AGG | - | tig0041095:7933-7952 | Msa1460820:intron | 15.0% |
| !! | ATTTAAAAATTGATTATAGG+TGG | + | tig0041095:8494-8513 | Msa1460820:intergenic | 15.0% |
| !!! | TCACAAAAATTTTCTAAAAT+TGG | - | tig0041095:8806-8825 | Msa1460820:intron | 15.0% |
| !! | AAATAAAATATACAGAGAAA+AGG | - | tig0041095:9057-9076 | Msa1460820:intron | 15.0% |
| !! | AATAAAATATACAGAGAAAA+GGG | - | tig0041095:9058-9077 | Msa1460820:intron | 15.0% |
| !! | ATTCATTCATTTAAATTGAT+AGG | + | tig0041095:9551-9570 | Msa1460820:intergenic | 15.0% |
| !! | GAATTCCAAATAATTATATA+GGG | + | tig0041095:10210-10229 | Msa1460820:intergenic | 15.0% |
| !! | TGAATTCCAAATAATTATAT+AGG | + | tig0041095:10211-10230 | Msa1460820:intergenic | 15.0% |
| !!! | TCAAATTTCTAGTAAATAAC+GGG | + | tig0041095:6250-6269 | Msa1460820:intergenic | 20.0% |
| !! | ATGAAGAAAAGAACAATATT+TGG | + | tig0041095:6309-6328 | Msa1460820:intergenic | 20.0% |
| !! | TAAGAACTTAAGTGAAAAAA+AGG | + | tig0041095:6501-6520 | Msa1460820:intergenic | 20.0% |
| !! | TGATTACAAAAAGGTTAATA+TGG | - | tig0041095:7097-7116 | Msa1460820:intron | 20.0% |
| !! | GAAGTCAGAATTTAATAATA+TGG | - | tig0041095:7583-7602 | Msa1460820:intron | 20.0% |
| !! | TTTCAATGCTTATATTATTG+AGG | - | tig0041095:8465-8484 | Msa1460820:intron | 20.0% |
| !! | AGAAGAATAAAAACAAACAT+AGG | - | tig0041095:8623-8642 | Msa1460820:intron | 20.0% |
| !! | GAAGAATAAAAACAAACATA+GGG | - | tig0041095:8624-8643 | Msa1460820:intron | 20.0% |
| !! | TTTCAAAATTTGTCAAAATG+TGG | + | tig0041095:8690-8709 | Msa1460820:intergenic | 20.0% |
| !!! | TTGTTTTTGTCCAATAAAAA+TGG | - | tig0041095:8769-8788 | Msa1460820:intron | 20.0% |
| !! | ATATTAGAATCGTTAAGTTA+CGG | - | tig0041095:9608-9627 | Msa1460820:intron | 20.0% |
| !! | TAATTATATAGGGTTAAGAA+GGG | + | tig0041095:10200-10219 | Msa1460820:intergenic | 20.0% |
| !! | ATAATTATATAGGGTTAAGA+AGG | + | tig0041095:10201-10220 | Msa1460820:intergenic | 20.0% |
| !! | CTTAACCCTATATAATTATT+TGG | - | tig0041095:10202-10221 | Msa1460820:intron | 20.0% |
| !!! | TTGTTTTTAGATGTTTGAAT+TGG | - | tig0041095:10513-10532 | Msa1460820:intron | 20.0% |
| !!! | TGTTTTTAGATGTTTGAATT+GGG | - | tig0041095:10514-10533 | Msa1460820:intron | 20.0% |
| !! | CCAATATCAATAACTAATAA+TGG | + | tig0041095:10673-10692 | Msa1460820:intergenic | 20.0% |
| !! | CCATTATTAGTTATTGATAT+TGG | - | tig0041095:10670-10689 | Msa1460820:intron | 20.0% |
| !! | AGTTATTGATATTGGAAAAA+AGG | - | tig0041095:10678-10697 | Msa1460820:intron | 20.0% |
| !!! | ATTCAACTCAATTATTTTAG+TGG | - | tig0041095:10904-10923 | Msa1460820:intron | 20.0% |
| !!! | TTTGGATGTGTTTTTAGTTT+TGG | - | tig0041095:6124-6143 | Msa1460820:CDS | 25.0% |
| !!! | GACATAATTTGTCCATTTTA+AGG | - | tig0041095:6989-7008 | Msa1460820:CDS | 25.0% |
| !!! | ATTTGTCCATTTTAAGGATT+TGG | - | tig0041095:6995-7014 | Msa1460820:CDS | 25.0% |
| ! | TCATTTCCAAATCCTTAAAA+TGG | + | tig0041095:7004-7023 | Msa1460820:intergenic | 25.0% |
| !!! | ACAATTTTAAGAATCTCTTC+AGG | + | tig0041095:7077-7096 | Msa1460820:intergenic | 25.0% |
| !! | ATGTCGTTTAATAATACTAG+AGG | - | tig0041095:7192-7211 | Msa1460820:intron | 25.0% |
| ! | AAACAAACAAAGAACTTCAA+TGG | + | tig0041095:7259-7278 | Msa1460820:intergenic | 25.0% |
| !! | CTTTTTGTTGATCTTTAATC+AGG | - | tig0041095:7459-7478 | Msa1460820:intron | 25.0% |
| !! | TGACTTCAAAGTCATATTTT+TGG | + | tig0041095:7570-7589 | Msa1460820:intergenic | 25.0% |
| ! | ATAATGCATGAAAGAACAAT+TGG | + | tig0041095:7639-7658 | Msa1460820:intergenic | 25.0% |
| !!! | TCTTCAGTTTAGTTTTAGAT+AGG | - | tig0041095:7725-7744 | Msa1460820:intron | 25.0% |
| ! | TTTCAACTATAGACTACTAT+TGG | + | tig0041095:7912-7931 | Msa1460820:intergenic | 25.0% |
| ! | TTACATGAAGAACAAAAGAT+TGG | + | tig0041095:8000-8019 | Msa1460820:intergenic | 25.0% |
| !!! | GACAATAAAGACTTGTTTTT+CGG | + | tig0041095:8104-8123 | Msa1460820:intergenic | 25.0% |
| !!! | CACTATTTTCTTTTAACTGT+GGG | + | tig0041095:8247-8266 | Msa1460820:intergenic | 25.0% |
| ! | ATTCCTAAATTCGTGATTAA+AGG | - | tig0041095:8371-8390 | Msa1460820:intron | 25.0% |
| !!! | ACAAGTTTCCTTTAAAACTT+GGG | + | tig0041095:8446-8465 | Msa1460820:intergenic | 25.0% |
| !!! | AACAAGTTTCCTTTAAAACT+TGG | + | tig0041095:8447-8466 | Msa1460820:intergenic | 25.0% |
| !!! | TTAAATTTTGAAAGGGAGTT+TGG | - | tig0041095:8508-8527 | Msa1460820:intron | 25.0% |
| !!! | CACTTTTTCTCCATTTTTAT+TGG | + | tig0041095:8782-8801 | Msa1460820:intergenic | 25.0% |
| ! | CAATAAAAATGGAGAAAAAG+TGG | - | tig0041095:8780-8799 | Msa1460820:intron | 25.0% |
| !!! | TGTTTGGGTATTTTTTTTGA+TGG | + | tig0041095:8848-8867 | Msa1460820:intergenic | 25.0% |
| ! | CAAATTCGCTAAAAACAAAA+AGG | + | tig0041095:9506-9525 | Msa1460820:intergenic | 25.0% |
| !!! | CTTTTTGTTTTTAGCGAATT+TGG | - | tig0041095:9504-9523 | Msa1460820:intron | 25.0% |
| ! | TATTAGAATCGTTAAGTTAC+GGG | - | tig0041095:9609-9628 | Msa1460820:intron | 25.0% |
| ! | GTTGAATGATATGAATTGTT+TGG | - | tig0041095:9642-9661 | Msa1460820:intron | 25.0% |
| ! | ATATGAATTGTTTGGAAGTT+GGG | - | tig0041095:9650-9669 | Msa1460820:intron | 25.0% |
| ! | GTAAATAACACGTTTGATTA+GGG | + | tig0041095:10080-10099 | Msa1460820:intergenic | 25.0% |
| ! | AGTAAATAACACGTTTGATT+AGG | + | tig0041095:10081-10100 | Msa1460820:intergenic | 25.0% |
| !! | TGATGATGATGATTATGAAT+CGG | + | tig0041095:10131-10150 | Msa1460820:intergenic | 25.0% |
| !! | TAATAAAGAGAAAGCATGTA+TGG | + | tig0041095:10263-10282 | Msa1460820:intergenic | 25.0% |
| ! | ACAAATCTCATTGAACAAAA+TGG | + | tig0041095:10467-10486 | Msa1460820:intergenic | 25.0% |
| ! | GTTGAATAAAACCTTGATTA+TGG | + | tig0041095:10891-10910 | Msa1460820:intergenic | 25.0% |
| ! | AATGCAATTCTAATAATCCA+AGG | + | tig0041095:10931-10950 | Msa1460820:intergenic | 25.0% |
| !! | CATTCATCTTATTTGTAATC+TGG | - | tig0041095:10947-10966 | Msa1460820:intron | 25.0% |
| ! | ATGTTATATTGTATCCAACA+TGG | - | tig0041095:11047-11066 | Msa1460820:intron | 25.0% |
| ! | TGTTATATTGTATCCAACAT+GGG | - | tig0041095:11048-11067 | Msa1460820:intron | 25.0% |
| ! | TTGAAATTAGTCATCAACAA+AGG | - | tig0041095:11414-11433 | Msa1460820:intron | 25.0% |
| ! | ATTTGAAATTGTCAAGAGCT+TGG | - | tig0041095:6264-6283 | Msa1460820:CDS | 30.0% |
| !!! | ATTGTTTTAGCATGTGTGAT+TGG | - | tig0041095:6631-6650 | Msa1460820:CDS | 30.0% |
| ATGTTAGACCTTTAACATGA+AGG | - | tig0041095:6656-6675 | Msa1460820:CDS | 30.0% | |
| ATGAAGGAAACTGAGAAAAT+TGG | - | tig0041095:6672-6691 | Msa1460820:CDS | 30.0% | |
| CAAGATCAAACTTATGGTTA+TGG | - | tig0041095:6698-6717 | Msa1460820:CDS | 30.0% | |
| CATGCAAATTAAATCTCTCA+TGG | + | tig0041095:6872-6891 | Msa1460820:intergenic | 30.0% | |
| !! | TTAATTTGCATGAGACATAG+TGG | - | tig0041095:6880-6899 | Msa1460820:intron | 30.0% |
| !! | TATGGATTGGAAAGTGTTTA+TGG | - | tig0041095:6908-6927 | Msa1460820:CDS | 30.0% |
| !! | ATGGATTGGAAAGTGTTTAT+GGG | - | tig0041095:6909-6928 | Msa1460820:CDS | 30.0% |
| ! | TTGATAGTAGATGAATGTGA+TGG | + | tig0041095:6954-6973 | Msa1460820:intergenic | 30.0% |
| ! | GATCATGTCTGATTTTCTAA+TGG | - | tig0041095:7166-7185 | Msa1460820:intron | 30.0% |
| !! | AGAGGAATAATTTGCTTCTT+TGG | - | tig0041095:7210-7229 | Msa1460820:intron | 30.0% |
| !! | GAGGAATAATTTGCTTCTTT+GGG | - | tig0041095:7211-7230 | Msa1460820:intron | 30.0% |
| ! | AAAGTCAAAGCTCTAATTAG+AGG | + | tig0041095:7443-7462 | Msa1460820:intergenic | 30.0% |
| !! | CATTGTTCTAAAACTCACTT+TGG | - | tig0041095:7679-7698 | Msa1460820:intron | 30.0% |
| GAATTTGGATCATTTATGGA+AGG | + | tig0041095:7877-7896 | Msa1460820:intergenic | 30.0% | |
| CTACTATTGGTCAAATTACT+CGG | + | tig0041095:7899-7918 | Msa1460820:intergenic | 30.0% | |
| TACGAAAATGCTAGTAATGA+TGG | + | tig0041095:8034-8053 | Msa1460820:intergenic | 30.0% | |
| TCGTAGAGATAAGACTTAAT+TGG | - | tig0041095:8049-8068 | Msa1460820:intron | 30.0% | |
| !! | AATAAAGACTTGTTTTTCGG+CGG | + | tig0041095:8101-8120 | Msa1460820:intergenic | 30.0% |
| GGTTGTAAGATAAATCCTAA+AGG | + | tig0041095:8167-8186 | Msa1460820:intergenic | 30.0% | |
| GGTTTAAGGGTAAACTTTAA+TGG | + | tig0041095:8188-8207 | Msa1460820:intergenic | 30.0% | |
| !! | CCACTATTTTCTTTTAACTG+TGG | + | tig0041095:8248-8267 | Msa1460820:intergenic | 30.0% |
| CCACAGTTAAAAGAAAATAG+TGG | - | tig0041095:8245-8264 | Msa1460820:intron | 30.0% | |
| ! | AAATAGTGGCAAGTTTTCAT+AGG | - | tig0041095:8259-8278 | Msa1460820:intron | 30.0% |
| ATGCCTTTAATCACGAATTT+AGG | + | tig0041095:8377-8396 | Msa1460820:intergenic | 30.0% | |
| TTCAGAACTAATCGTAGTTA+TGG | + | tig0041095:8419-8438 | Msa1460820:intergenic | 30.0% | |
| !! | TGAAAGATCCCAAGTTTTAA+AGG | - | tig0041095:8435-8454 | Msa1460820:intron | 30.0% |
| ! | TATTTCCTTCATTCACCTTT+TGG | + | tig0041095:8953-8972 | Msa1460820:intergenic | 30.0% |
| TGAATGAAGGAAATAAGCAA+CGG | - | tig0041095:8958-8977 | Msa1460820:intron | 30.0% | |
| AAGAACAAACAAAAGAGACA+AGG | - | tig0041095:9014-9033 | Msa1460820:intron | 30.0% | |
| TATGACTATATTCAAGTCTC+CGG | + | tig0041095:9404-9423 | Msa1460820:intergenic | 30.0% | |
| GTCATAGTAGTCATATTTGT+AGG | - | tig0041095:9418-9437 | Msa1460820:intron | 30.0% | |
| !! | GTCGTTTTATGCTATTAACA+TGG | - | tig0041095:9453-9472 | Msa1460820:intron | 30.0% |
| TGAATTTGTGAACAAACTCA+CGG | + | tig0041095:9482-9501 | Msa1460820:intergenic | 30.0% | |
| GATATGAATTGTTTGGAAGT+TGG | - | tig0041095:9649-9668 | Msa1460820:intron | 30.0% | |
| ! | AATCAATCTTAGAGCATTTC+TGG | - | tig0041095:10538-10557 | Msa1460820:intron | 30.0% |
| CAAACCAAGAAGAATCAAAA+TGG | + | tig0041095:10830-10849 | Msa1460820:intergenic | 30.0% | |
| !!! | TCAATTATTTTAGTGGTCCT+TGG | - | tig0041095:10911-10930 | Msa1460820:intron | 30.0% |
| ! | TCATCTTATTTGTAATCTGG+TGG | - | tig0041095:10950-10969 | Msa1460820:intron | 30.0% |
| ! | CATCTTATTTGTAATCTGGT+GGG | - | tig0041095:10951-10970 | Msa1460820:intron | 30.0% |
| ! | ATCTTATTTGTAATCTGGTG+GGG | - | tig0041095:10952-10971 | Msa1460820:intron | 30.0% |
| !! | TTCCTTCCATTTTAAGTGAA+GGG | + | tig0041095:11016-11035 | Msa1460820:intergenic | 30.0% |
| !! | TTTCCTTCCATTTTAAGTGA+AGG | + | tig0041095:11017-11036 | Msa1460820:intergenic | 30.0% |
| AAAAGCTGAAGAAGAAACAT+TGG | + | tig0041095:11204-11223 | Msa1460820:intergenic | 30.0% | |
| !! | TCTTCAGCTTTTTGTCATTT+TGG | - | tig0041095:11212-11231 | Msa1460820:intron | 30.0% |
| !! | ATTATTTTACAAGCACAGCA+AGG | - | tig0041095:11283-11302 | Msa1460820:intron | 30.0% |
| !! | TTATTTTACAAGCACAGCAA+GGG | - | tig0041095:11284-11303 | Msa1460820:intron | 30.0% |
| TCAACAAAGGTTTACAGAAA+AGG | - | tig0041095:11427-11446 | Msa1460820:intron | 30.0% | |
| CAACAAAGGTTTACAGAAAA+GGG | - | tig0041095:11428-11447 | Msa1460820:intron | 30.0% | |
| ! | TTTTGTGTTTCCTTCCATTA+AGG | - | tig0041095:11472-11491 | Msa1460820:intron | 30.0% |
| TTTGTGTTTCCTTCCATTAA+GGG | - | tig0041095:11473-11492 | Msa1460820:intron | 30.0% | |
| ! | CTTGGTTTATCTGTTTTATC+TGG | - | tig0041095:11504-11523 | Msa1460820:intron | 30.0% |
| AAGAAAAGCCAAGAAAACAA+AGG | + | tig0041095:11553-11572 | Msa1460820:intergenic | 30.0% | |
| TCATTTGGAAGATAATGTTG+AGG | - | tig0041095:11728-11747 | Msa1460820:CDS | 30.0% | |
| ! | CTTCTTCTTCCTGTTCTTTT+TGG | + | tig0041095:5831-5850 | Msa0158910:intergenic | 35.0% |
| ACTTCTTCAAGCCATGAAAA+TGG | + | tig0041095:5956-5975 | Msa1460820:intergenic | 35.0% | |
| AAGACAACAACTACGACTAT+GGG | - | tig0041095:5981-6000 | Msa1460820:CDS | 35.0% | |
| TCTGTTTCAGAACCTGTTTA+TGG | - | tig0041095:6061-6080 | Msa1460820:CDS | 35.0% | |
| ! | TGAAAAAAAGGCAAGAGTGT+GGG | + | tig0041095:6489-6508 | Msa1460820:intergenic | 35.0% |
| CTCAGTTTCCTTCATGTTAA+AGG | + | tig0041095:6667-6686 | Msa1460820:intergenic | 35.0% | |
| TGGCATCAAGATCAAACTTA+TGG | - | tig0041095:6692-6711 | Msa1460820:CDS | 35.0% | |
| TAGTAGATGAATGTGATGGT+CGG | + | tig0041095:6950-6969 | Msa1460820:intergenic | 35.0% | |
| !! | CTGAAGGAAACATGTTTTGA+TGG | + | tig0041095:7394-7413 | Msa1460820:intergenic | 35.0% |
| TTAGATAGGAAGACCACATA+TGG | - | tig0041095:7739-7758 | Msa1460820:intron | 35.0% | |
| TAGATAGGAAGACCACATAT+GGG | - | tig0041095:7740-7759 | Msa1460820:intron | 35.0% | |
| !! | ATGGGCAAGTTTTATGGATA+AGG | - | tig0041095:7758-7777 | Msa1460820:intron | 35.0% |
| !! | GCAAGTTTTATGGATAAGGA+AGG | - | tig0041095:7762-7781 | Msa1460820:intron | 35.0% |
| GAAAGAAACTTCATCGATCT+TGG | - | tig0041095:7833-7852 | Msa1460820:intron | 35.0% | |
| CTCGGAATTTGGATCATTTA+TGG | + | tig0041095:7881-7900 | Msa1460820:intergenic | 35.0% | |
| TGGTCAAATTACTCGGAATT+TGG | + | tig0041095:7892-7911 | Msa1460820:intergenic | 35.0% | |
| GATCATAAAGTTCAAGGTTG+GGG | + | tig0041095:7964-7983 | Msa1460820:intergenic | 35.0% | |
| CGATCATAAAGTTCAAGGTT+GGG | + | tig0041095:7965-7984 | Msa1460820:intergenic | 35.0% | |
| TCGATCATAAAGTTCAAGGT+TGG | + | tig0041095:7966-7985 | Msa1460820:intergenic | 35.0% | |
| CAGTTCGATCATAAAGTTCA+AGG | + | tig0041095:7970-7989 | Msa1460820:intergenic | 35.0% | |
| ATGAAGAACAAAAGATTGGC+AGG | + | tig0041095:7996-8015 | Msa1460820:intergenic | 35.0% | |
| AGATAAATCCTAAAGGAGCA+TGG | + | tig0041095:8160-8179 | Msa1460820:intergenic | 35.0% | |
| GTGTGAAGTTGAAGGTTTAA+GGG | + | tig0041095:8201-8220 | Msa1460820:intergenic | 35.0% | |
| TGTGTGAAGTTGAAGGTTTA+AGG | + | tig0041095:8202-8221 | Msa1460820:intergenic | 35.0% | |
| !! | CTTTTAACTGTGGGCTAATA+GGG | + | tig0041095:8238-8257 | Msa1460820:intergenic | 35.0% |
| !! | TCTTTTAACTGTGGGCTAAT+AGG | + | tig0041095:8239-8258 | Msa1460820:intergenic | 35.0% |
| ! | CATTAGCAATTCTTGGTTCT+TGG | + | tig0041095:8308-8327 | Msa1460820:intergenic | 35.0% |
| CAAGAACCAAGAATTGCTAA+TGG | - | tig0041095:8306-8325 | Msa1460820:intron | 35.0% | |
| CTTGAACCATTAGCAATTCT+TGG | + | tig0041095:8315-8334 | Msa1460820:intergenic | 35.0% | |
| CAAGAATTGCTAATGGTTCA+AGG | - | tig0041095:8313-8332 | Msa1460820:intron | 35.0% | |
| CTGGAAAAAATCTTGAAAGG+CGG | + | tig0041095:8340-8359 | Msa1460820:intergenic | 35.0% | |
| !!! | GCCTTTCAAGATTTTTTCCA+GGG | - | tig0041095:8339-8358 | Msa1460820:intron | 35.0% |
| ACCCTGGAAAAAATCTTGAA+AGG | + | tig0041095:8343-8362 | Msa1460820:intergenic | 35.0% | |
| !!! | TGTTTTCTTGTTTTGCTCCT+TGG | + | tig0041095:8597-8616 | Msa1460820:intergenic | 35.0% |
| ! | TCCTTTCTCTCTAGGTTTTT+GGG | + | tig0041095:8888-8907 | Msa1460820:intergenic | 35.0% |
| TAACACCAAAAGGTGAATGA+AGG | - | tig0041095:8945-8964 | Msa1460820:intron | 35.0% | |
| AACAAAAGAGACAAGGACAA+AGG | - | tig0041095:9021-9040 | Msa1460820:intron | 35.0% | |
| ACAAAAGAGACAAGGACAAA+GGG | - | tig0041095:9022-9041 | Msa1460820:intron | 35.0% | |
| GAGAAGAGAAAGGAAGAAAT+GGG | + | tig0041095:9170-9189 | Msa1460820:intergenic | 35.0% | |
| TGAGAAGAGAAAGGAAGAAA+TGG | + | tig0041095:9171-9190 | Msa1460820:intergenic | 35.0% | |
| TCAGAGACAAGAAGAAGAAA+GGG | + | tig0041095:9209-9228 | Msa1460820:intergenic | 35.0% | |
| TTCAGAGACAAGAAGAAGAA+AGG | + | tig0041095:9210-9229 | Msa1460820:intergenic | 35.0% | |
| AAATAAACACCGCACTAAGA+CGG | + | tig0041095:9284-9303 | Msa1460820:intergenic | 35.0% | |
| CCAAAGTCATTGTCATTGAT+CGG | + | tig0041095:9345-9364 | Msa1460820:intergenic | 35.0% | |
| TGAATGAATGTGTGATGAGT+GGG | + | tig0041095:9790-9809 | Msa1460820:intergenic | 35.0% | |
| ATGAATGAATGTGTGATGAG+TGG | + | tig0041095:9791-9810 | Msa1460820:intergenic | 35.0% | |
| TTGCTCCATTCTCTGAATTA+GGG | - | tig0041095:9877-9896 | Msa1460820:intron | 35.0% | |
| GAAAACCCTAATTCAGAGAA+TGG | + | tig0041095:9885-9904 | Msa1460820:intergenic | 35.0% | |
| TAACACGTTTGATTAGGGTA+GGG | + | tig0041095:10075-10094 | Msa1460820:intergenic | 35.0% | |
| ATAACACGTTTGATTAGGGT+AGG | + | tig0041095:10076-10095 | Msa1460820:intergenic | 35.0% | |
| CGGTACTTATAGAATAGAAG+AGG | + | tig0041095:10111-10130 | Msa1460820:intergenic | 35.0% | |
| TGATTCTGATTCTTAGTGGA+TGG | + | tig0041095:10338-10357 | Msa1460820:intergenic | 35.0% | |
| !! | CTACTGATTCTGATTCTTAG+TGG | + | tig0041095:10342-10361 | Msa1460820:intergenic | 35.0% |
| ! | ACGAAGTAAGCATGGATTAT+GGG | + | tig0041095:10436-10455 | Msa1460820:intergenic | 35.0% |
| ATGTAATCATCTACCCTTGA+TGG | - | tig0041095:10604-10623 | Msa1460820:intron | 35.0% | |
| !!! | GTAGCCATTTTGATTCTTCT+TGG | - | tig0041095:10823-10842 | Msa1460820:intron | 35.0% |
| CTGGAATTATGAGCAGAAAA+TGG | - | tig0041095:11139-11158 | Msa1460820:intron | 35.0% | |
| !!! | CAGCTTTTTGTCATTTTGGT+TGG | - | tig0041095:11216-11235 | Msa1460820:intron | 35.0% |
| ACCTCAGTTAGACAAGAATA+AGG | - | tig0041095:11239-11258 | Msa1460820:intron | 35.0% | |
| CCTCAGTTAGACAAGAATAA+GGG | - | tig0041095:11240-11259 | Msa1460820:intron | 35.0% | |
| GCTGTGCTTGTAAAATAATG+CGG | + | tig0041095:11282-11301 | Msa1460820:intergenic | 35.0% | |
| ! | TATTTTACAAGCACAGCAAG+GGG | - | tig0041095:11285-11304 | Msa1460820:intron | 35.0% |
| AAGTAAAGGGTAAGTACACA+GGG | + | tig0041095:11325-11344 | Msa1460820:intergenic | 35.0% | |
| TAAGTAAAGGGTAAGTACAC+AGG | + | tig0041095:11326-11345 | Msa1460820:intergenic | 35.0% | |
| GAAGAACGGTACTAAGTAAA+GGG | + | tig0041095:11338-11357 | Msa1460820:intergenic | 35.0% | |
| AGAAGAACGGTACTAAGTAA+AGG | + | tig0041095:11339-11358 | Msa1460820:intergenic | 35.0% | |
| TTACTTAGTACCGTTCTTCT+TGG | - | tig0041095:11339-11358 | Msa1460820:intron | 35.0% | |
| ! | AAGTCAGGATAATGGCAAAA+AGG | + | tig0041095:11365-11384 | Msa1460820:intergenic | 35.0% |
| GAAAAAGAACCCTTAATGGA+AGG | + | tig0041095:11485-11504 | Msa1460820:intergenic | 35.0% | |
| CCAAGAAAAAGAACCCTTAA+TGG | + | tig0041095:11489-11508 | Msa1460820:intergenic | 35.0% | |
| ! | CCATTAAGGGTTCTTTTTCT+TGG | - | tig0041095:11486-11505 | Msa1460820:intron | 35.0% |
| GCTTCAAACATAAAATGCTC+AGG | + | tig0041095:11531-11550 | Msa1460820:intergenic | 35.0% | |
| !!! | GTTTGAAGCCTTTGTTTTCT+TGG | - | tig0041095:11542-11561 | Msa1460820:intron | 35.0% |
| TTGCACTTGTATGTTGTTCT+GGG | - | tig0041095:11571-11590 | Msa1460820:intron | 35.0% | |
| CATTATCTTCCAAATGACTC+TGG | + | tig0041095:11725-11744 | Msa1460820:intergenic | 35.0% | |
| ATAATGTTGAGGAAAATGCC+CGG | - | tig0041095:11739-11758 | Msa1460820:CDS | 35.0% | |
| ! | GTCAATTTCTTTTCGGACAA+TGG | - | tig0041095:11803-11822 | Msa1460820:CDS | 35.0% |
| ! | TTCTTTTCGGACAATGGAAA+AGG | - | tig0041095:11809-11828 | Msa1460820:CDS | 35.0% |
| ! | TCTTTTCGGACAATGGAAAA+GGG | - | tig0041095:11810-11829 | Msa1460820:CDS | 35.0% |
| CATGAAAATGGAGGTAAGTG+TGG | + | tig0041095:5944-5963 | Msa0158910:intergenic | 40.0% | |
| ! | CACACTTACCTCCATTTTCA+TGG | - | tig0041095:5942-5961 | Msa1460820:CDS | 40.0% |
| TCTTCAAGCCATGAAAATGG+AGG | + | tig0041095:5953-5972 | Msa1460820:intergenic | 40.0% | |
| CAAGACAACAACTACGACTA+TGG | - | tig0041095:5980-5999 | Msa1460820:CDS | 40.0% | |
| ATTCATGTTGCCACCAGAAA+TGG | - | tig0041095:6006-6025 | Msa1460820:CDS | 40.0% | |
| AGAACCTGTTTATGGCATTC+CGG | - | tig0041095:6069-6088 | Msa1460820:CDS | 40.0% | |
| GAGAGATCAACAGGTCAATT+TGG | - | tig0041095:6106-6125 | Msa1460820:CDS | 40.0% | |
| GTTCGTCGAATGTGAAAACA+TGG | + | tig0041095:6175-6194 | Msa1460820:intergenic | 40.0% | |
| ! | TAGTAAATAACGGGAGACAG+GGG | + | tig0041095:6241-6260 | Msa1460820:intergenic | 40.0% |
| ! | CTAGTAAATAACGGGAGACA+GGG | + | tig0041095:6242-6261 | Msa1460820:intergenic | 40.0% |
| ! | TCTAGTAAATAACGGGAGAC+AGG | + | tig0041095:6243-6262 | Msa1460820:intergenic | 40.0% |
| !! | TTTTGAGTGAAACGCACGTA+AGG | + | tig0041095:6391-6410 | Msa1460820:intergenic | 40.0% |
| ! | GAAAAAAAGGCAAGAGTGTG+GGG | + | tig0041095:6488-6507 | Msa1460820:intergenic | 40.0% |
| GTGAAAAAAAGGCAAGAGTG+TGG | + | tig0041095:6490-6509 | Msa1460820:intergenic | 40.0% | |
| ATGCTTTGCTTGCGATGATT+TGG | + | tig0041095:6733-6752 | Msa1460820:intergenic | 40.0% | |
| ! | TGAGACATAGTGGAAACGTA+TGG | - | tig0041095:6890-6909 | Msa1460820:CDS | 40.0% |
| ! | CATAGTGGAAACGTATGGAT+TGG | - | tig0041095:6895-6914 | Msa1460820:CDS | 40.0% |
| ! | CTGATGAAAGCAAGTTCTGA+AGG | + | tig0041095:7410-7429 | Msa1460820:intergenic | 40.0% |
| CCATAAAACTTGCCCATATG+TGG | + | tig0041095:7755-7774 | Msa1460820:intergenic | 40.0% | |
| ! | CCACATATGGGCAAGTTTTA+TGG | - | tig0041095:7752-7771 | Msa1460820:intron | 40.0% |
| GATAAGGAAGGTAGAGTAAG+TGG | - | tig0041095:7774-7793 | Msa1460820:intron | 40.0% | |
| TTCTTTCCAGGAACTGCAAA+GGG | + | tig0041095:7820-7839 | Msa1460820:intergenic | 40.0% | |
| TTTCTTTCCAGGAACTGCAA+AGG | + | tig0041095:7821-7840 | Msa1460820:intergenic | 40.0% | |
| GATCGATGAAGTTTCTTTCC+AGG | + | tig0041095:7832-7851 | Msa1460820:intergenic | 40.0% | |
| GAAACTTCATCGATCTTGGT+CGG | - | tig0041095:7837-7856 | Msa1460820:intron | 40.0% | |
| !! | TATGGAAGGCATTGATGACA+AGG | + | tig0041095:7863-7882 | Msa1460820:intergenic | 40.0% |
| ACCCCATGAAATCTCTTAGT+GGG | + | tig0041095:8076-8095 | Msa1460820:intergenic | 40.0% | |
| AACCCCATGAAATCTCTTAG+TGG | + | tig0041095:8077-8096 | Msa1460820:intergenic | 40.0% | |
| TACAGTCTATAGTAGGAGAG+TGG | + | tig0041095:8129-8148 | Msa1460820:intergenic | 40.0% | |
| GAAGGTTTGTGTGAAGTTGA+AGG | + | tig0041095:8209-8228 | Msa1460820:intergenic | 40.0% | |
| !!! | CGCCTTTCAAGATTTTTTCC+AGG | - | tig0041095:8338-8357 | Msa1460820:intron | 40.0% |
| TTAGGAATCAACAACTACCC+TGG | + | tig0041095:8359-8378 | Msa1460820:intergenic | 40.0% | |
| AGCATAAGACCTTTACCATG+AGG | - | tig0041095:8551-8570 | Msa1460820:intron | 40.0% | |
| TAAGACCTTTACCATGAGGA+TGG | - | tig0041095:8555-8574 | Msa1460820:intron | 40.0% | |
| ACCCAAAAACCTAGAGAGAA+AGG | - | tig0041095:8884-8903 | Msa1460820:intron | 40.0% | |
| ! | GTCCTTTCTCTCTAGGTTTT+TGG | + | tig0041095:8889-8908 | Msa1460820:intergenic | 40.0% |
| TCTTGATGTCCTTTCTCTCT+AGG | + | tig0041095:8896-8915 | Msa1460820:intergenic | 40.0% | |
| AGAGAGAAAGGACATCAAGA+AGG | - | tig0041095:8896-8915 | Msa1460820:intron | 40.0% | |
| CAGCACAAACTAACACCAAA+AGG | - | tig0041095:8935-8954 | Msa1460820:intron | 40.0% | |
| AAGGAAATAAGCAACGGAGA+AGG | - | tig0041095:8964-8983 | Msa1460820:intron | 40.0% | |
| CAGAGACAAGAAGAAGAAAG+GGG | + | tig0041095:9208-9227 | Msa1460820:intergenic | 40.0% | |
| ! | TTTGATTTCCCGTCTTTGTG+CGG | - | tig0041095:9243-9262 | Msa1460820:intron | 40.0% |
| AAAAACACACCGCACAAAGA+CGG | + | tig0041095:9255-9274 | Msa1460820:intergenic | 40.0% | |
| ! | TTTGATTTCCCGTCTTAGTG+CGG | - | tig0041095:9272-9291 | Msa1460820:intron | 40.0% |
| AATAAACACCGCACTAAGAC+GGG | + | tig0041095:9283-9302 | Msa1460820:intergenic | 40.0% | |
| GTGCGGTGTTTATTTGATTC+AGG | - | tig0041095:9289-9308 | Msa1460820:intron | 40.0% | |
| CCGATCAATGACAATGACTT+TGG | - | tig0041095:9342-9361 | Msa1460820:intron | 40.0% | |
| ATCCGGAGATATGAGTATTC+CGG | - | tig0041095:9382-9401 | Msa1460820:intron | 40.0% | |
| GGATGAGAGGAAGAAAGAAA+AGG | - | tig0041095:9671-9690 | Msa1460820:intron | 40.0% | |
| GTTGCTCCATTCTCTGAATT+AGG | - | tig0041095:9876-9895 | Msa1460820:intron | 40.0% | |
| AAGGAAAAGAGAGCTTACAG+TGG | + | tig0041095:9966-9985 | Msa1460820:intergenic | 40.0% | |
| AACACGTTTGATTAGGGTAG+GGG | + | tig0041095:10074-10093 | Msa1460820:intergenic | 40.0% | |
| AGGGTTAAGAAGGGTTTGAT+GGG | + | tig0041095:10191-10210 | Msa1460820:intergenic | 40.0% | |
| TAGGGTTAAGAAGGGTTTGA+TGG | + | tig0041095:10192-10211 | Msa1460820:intergenic | 40.0% | |
| ! | GACGAAGTAAGCATGGATTA+TGG | + | tig0041095:10437-10456 | Msa1460820:intergenic | 40.0% |
| TATCAAGCATCTAGCACTCT+TGG | + | tig0041095:10575-10594 | Msa1460820:intergenic | 40.0% | |
| ! | AATCATCTACCCTTGATGGT+TGG | - | tig0041095:10608-10627 | Msa1460820:intron | 40.0% |
| TACGCATAACCAACCATCAA+GGG | + | tig0041095:10620-10639 | Msa1460820:intergenic | 40.0% | |
| ATACGCATAACCAACCATCA+AGG | + | tig0041095:10621-10640 | Msa1460820:intergenic | 40.0% | |
| ATGGATACCAGAAATCCTCT+GGG | + | tig0041095:10711-10730 | Msa1460820:intergenic | 40.0% | |
| CATGCGTGGAATCTGTATTT+CGG | - | tig0041095:10743-10762 | Msa1460820:intron | 40.0% | |
| ATGCGTGGAATCTGTATTTC+GGG | - | tig0041095:10744-10763 | Msa1460820:intron | 40.0% | |
| CTTGATTATGGATTCGAGAG+CGG | + | tig0041095:10879-10898 | Msa1460820:intergenic | 40.0% | |
| GGGGTCTAGGTGAAATTATT+AGG | - | tig0041095:10971-10990 | Msa1460820:intron | 40.0% | |
| TGCCCTTCACTTAAAATGGA+AGG | - | tig0041095:11011-11030 | Msa1460820:intron | 40.0% | |
| GAAATACAAGTGTGAGGAAG+AGG | + | tig0041095:11089-11108 | Msa1460820:intergenic | 40.0% | |
| GCTGAAGAAGAAACATTGGA+AGG | + | tig0041095:11200-11219 | Msa1460820:intergenic | 40.0% | |
| CCCTTATTCTTGTCTAACTG+AGG | + | tig0041095:11243-11262 | Msa1460820:intergenic | 40.0% | |
| ! | ATTTTACAAGCACAGCAAGG+GGG | - | tig0041095:11286-11305 | Msa1460820:intron | 40.0% |
| AAGGTAGGAAGTCAGGATAA+TGG | + | tig0041095:11373-11392 | Msa1460820:intergenic | 40.0% | |
| !!! | TCCTGACTTCCTACCTTTTT+TGG | - | tig0041095:11376-11395 | Msa1460820:intron | 40.0% |
| !!! | ACTTCCTACCTTTTTTGGCT+TGG | - | tig0041095:11381-11400 | Msa1460820:intron | 40.0% |
| ACTACCAAGCCAAAAAAGGT+AGG | + | tig0041095:11388-11407 | Msa1460820:intergenic | 40.0% | |
| !!! | ACCTTTTTTGGCTTGGTAGT+CGG | - | tig0041095:11388-11407 | Msa1460820:intron | 40.0% |
| CTTGCACTTGTATGTTGTTC+TGG | - | tig0041095:11570-11589 | Msa1460820:intron | 40.0% | |
| CTAAACAATCTGCAACTGGA+CGG | + | tig0041095:11620-11639 | Msa1460820:intergenic | 40.0% | |
| AGAGCTAAACAATCTGCAAC+TGG | + | tig0041095:11624-11643 | Msa1460820:intergenic | 40.0% | |
| ! | AGTTGCAGATTGTTTAGCTC+TGG | - | tig0041095:11623-11642 | Msa1460820:intron | 40.0% |
| !! | GTTGCAGATTGTTTAGCTCT+GGG | - | tig0041095:11624-11643 | Msa1460820:intron | 40.0% |
| TCTGGGAAATCTACAAGACT+TGG | - | tig0041095:11641-11660 | Msa1460820:intron | 40.0% | |
| ATCTACAAGACTTGGAAGCT+AGG | - | tig0041095:11649-11668 | Msa1460820:intron | 40.0% | |
| ATGACTCTGGCTAGTGATAA+GGG | + | tig0041095:11712-11731 | Msa1460820:intergenic | 40.0% | |
| AATGACTCTGGCTAGTGATA+AGG | + | tig0041095:11713-11732 | Msa1460820:intergenic | 40.0% | |
| TATCACTAGCCAGAGTCATT+TGG | - | tig0041095:11713-11732 | Msa1460820:CDS | 40.0% | |
| GATTCATCTGAATACCTACC+AGG | + | tig0041095:11771-11790 | Msa1460820:intergenic | 40.0% | |
| TCAGATGAATCAACAAAGCG+TGG | - | tig0041095:11780-11799 | Msa1460820:CDS | 40.0% | |
| CAGATGAATCAACAAAGCGT+GGG | - | tig0041095:11781-11800 | Msa1460820:CDS | 40.0% | |
| ! | AGCGTGGGTCAATTTCTTTT+CGG | - | tig0041095:11796-11815 | Msa1460820:CDS | 40.0% |
| ATGGCACAATAACTTGGGTT+GGG | + | tig0041095:11938-11957 | Msa1460820:intergenic | 40.0% | |
| TATGGCACAATAACTTGGGT+TGG | + | tig0041095:11939-11958 | Msa1460820:intergenic | 40.0% | |
| ! | ACCATCTTGTGCTTGACTTG+GGG | + | tig0041095:6038-6057 | Msa1460820:intergenic | 45.0% |
| CACCATCTTGTGCTTGACTT+GGG | + | tig0041095:6039-6058 | Msa1460820:intergenic | 45.0% | |
| ACACCATCTTGTGCTTGACT+TGG | + | tig0041095:6040-6059 | Msa1460820:intergenic | 45.0% | |
| AGAACCGGAATGCCATAAAC+AGG | + | tig0041095:6076-6095 | Msa1460820:intergenic | 45.0% | |
| TGTTTATGGCATTCCGGTTC+TGG | - | tig0041095:6075-6094 | Msa1460820:CDS | 45.0% | |
| ATCGCAAGCAAAGCATGATC+TGG | - | tig0041095:6737-6756 | Msa1460820:CDS | 45.0% | |
| CCAGGTTTGTCTTCTTCTGA+AGG | + | tig0041095:7336-7355 | Msa1460820:intergenic | 45.0% | |
| CCTTCAGAAGAAGACAAACC+TGG | - | tig0041095:7333-7352 | Msa1460820:intron | 45.0% | |
| ! | ACTCTAAAGAGACTCTGACC+AGG | + | tig0041095:7354-7373 | Msa1460820:intergenic | 45.0% |
| ! | ACATCATGCTCTGAACGCAA+AGG | + | tig0041095:7540-7559 | Msa1460820:intergenic | 45.0% |
| GCCCCACTAAGAGATTTCAT+GGG | - | tig0041095:8071-8090 | Msa1460820:intron | 45.0% | |
| CCCCATGAAATCTCTTAGTG+GGG | + | tig0041095:8075-8094 | Msa1460820:intergenic | 45.0% | |
| CCCCACTAAGAGATTTCATG+GGG | - | tig0041095:8072-8091 | Msa1460820:intron | 45.0% | |
| AGTCTATAGTAGGAGAGTGG+TGG | + | tig0041095:8126-8145 | Msa1460820:intergenic | 45.0% | |
| TGAGGGCTACAGTCTATAGT+AGG | + | tig0041095:8136-8155 | Msa1460820:intergenic | 45.0% | |
| ! | TCCTAAAGGAGCATGGTTGA+GGG | + | tig0041095:8153-8172 | Msa1460820:intergenic | 45.0% |
| ! | ATCCTAAAGGAGCATGGTTG+AGG | + | tig0041095:8154-8173 | Msa1460820:intergenic | 45.0% |
| GCACATTCATTTCCCAAGCA+TGG | - | tig0041095:8281-8300 | Msa1460820:intron | 45.0% | |
| ! | TTGGTTCTTGGTCCATGCTT+GGG | + | tig0041095:8296-8315 | Msa1460820:intergenic | 45.0% |
| ATGGACCATCCTCATGGTAA+AGG | + | tig0041095:8563-8582 | Msa1460820:intergenic | 45.0% | |
| !!! | CTAGGTTTTTGGGTGTCTCT+GGG | + | tig0041095:8878-8897 | Msa1460820:intergenic | 45.0% |
| !!! | TCTAGGTTTTTGGGTGTCTC+TGG | + | tig0041095:8879-8898 | Msa1460820:intergenic | 45.0% |
| GCTAGGGTTTGAGAAGAGAA+AGG | + | tig0041095:9180-9199 | Msa1460820:intergenic | 45.0% | |
| CAAGAAGAAGAAAGGGGTGA+CGG | + | tig0041095:9202-9221 | Msa1460820:intergenic | 45.0% | |
| AAAACACACCGCACAAAGAC+GGG | + | tig0041095:9254-9273 | Msa1460820:intergenic | 45.0% | |
| CTCCGGAATACTCATATCTC+CGG | + | tig0041095:9387-9406 | Msa1460820:intergenic | 45.0% | |
| TGTTTGGAAGTTGGGATGAG+AGG | - | tig0041095:9658-9677 | Msa1460820:intron | 45.0% | |
| AGATAGATGACCGAAGCAAG+TGG | - | tig0041095:9702-9721 | Msa1460820:intron | 45.0% | |
| GATAGATGACCGAAGCAAGT+GGG | - | tig0041095:9703-9722 | Msa1460820:intron | 45.0% | |
| TGTGATGAGTGGGACTTTGT+TGG | + | tig0041095:9780-9799 | Msa1460820:intergenic | 45.0% | |
| GAGAGAGAGAGAGAAAGAAG+AGG | + | tig0041095:9844-9863 | Msa1460820:intergenic | 45.0% | |
| CTACACAGACGAAGTAAGCA+TGG | + | tig0041095:10444-10463 | Msa1460820:intergenic | 45.0% | |
| TGGATACCAGAAATCCTCTG+GGG | + | tig0041095:10710-10729 | Msa1460820:intergenic | 45.0% | |
| CATGGATACCAGAAATCCTC+TGG | + | tig0041095:10712-10731 | Msa1460820:intergenic | 45.0% | |
| !! | AGATTTGCTGCCGAAGCATT+CGG | - | tig0041095:10781-10800 | Msa1460820:intron | 45.0% |
| CGCTCTCGAATCCATAATCA+AGG | - | tig0041095:10877-10896 | Msa1460820:intron | 45.0% | |
| TTTGTAATCTGGTGGGGTCT+AGG | - | tig0041095:10958-10977 | Msa1460820:intron | 45.0% | |
| GACGTGCCCTTCACTTAAAA+TGG | - | tig0041095:11007-11026 | Msa1460820:intron | 45.0% | |
| AGGTTCTGCAAATCCCATGT+TGG | + | tig0041095:11064-11083 | Msa1460820:intergenic | 45.0% | |
| GGAGGAGAAATACAAGTGTG+AGG | + | tig0041095:11095-11114 | Msa1460820:intergenic | 45.0% | |
| GGCAAAAAGGCCAAGAAGAA+CGG | + | tig0041095:11352-11371 | Msa1460820:intergenic | 45.0% | |
| GCCAAAAAAGGTAGGAAGTC+AGG | + | tig0041095:11380-11399 | Msa1460820:intergenic | 45.0% | |
| TCCGACTACCAAGCCAAAAA+AGG | + | tig0041095:11392-11411 | Msa1460820:intergenic | 45.0% | |
| AAGACTTGGAAGCTAGGACT+AGG | - | tig0041095:11655-11674 | Msa1460820:intron | 45.0% | |
| AATACCTACCAGGACTAAGC+CGG | + | tig0041095:11761-11780 | Msa1460820:intergenic | 45.0% | |
| !! | GAAAAGGGTGTTGCTTCAAC+TGG | - | tig0041095:11825-11844 | Msa1460820:CDS | 45.0% |
| ! | TGGCACAATAACTTGGGTTG+GGG | + | tig0041095:11937-11956 | Msa1460820:intergenic | 45.0% |
| !! | AAAATTTAAAAATTGATTAT+AGG | + | tig0041095:8497-8516 | Msa1460820:intergenic | 5.0% |
| !! | CAATAATTATTAATTAATAA+AGG | + | tig0041095:9985-10004 | Msa1460820:intergenic | 5.0% |
| CAAGAGCAACAATGGTGGCA+CGG | + | tig0041095:5893-5912 | Msa0158910:intergenic | 50.0% | |
| TGGAGCAAGAGCAACAATGG+TGG | + | tig0041095:5898-5917 | Msa0158910:intergenic | 50.0% | |
| TGGTGGAGCAAGAGCAACAA+TGG | + | tig0041095:5901-5920 | Msa0158910:intergenic | 50.0% | |
| TAAGTGTGGAGCTGATGGCT+GGG | + | tig0041095:5930-5949 | Msa0158910:intergenic | 50.0% | |
| ! | CTTGGGGGATATGCCATTTC+TGG | + | tig0041095:6022-6041 | Msa1460820:intergenic | 50.0% |
| !! | CCATCTTGTGCTTGACTTGG+GGG | + | tig0041095:6037-6056 | Msa1460820:intergenic | 50.0% |
| ! | GCACTGACAGAGAGATCAAC+AGG | - | tig0041095:6097-6116 | Msa1460820:CDS | 50.0% |
| TCCAGGAACTGCAAAGGGTT+GGG | + | tig0041095:7815-7834 | Msa1460820:intergenic | 50.0% | |
| TTCCAGGAACTGCAAAGGGT+TGG | + | tig0041095:7816-7835 | Msa1460820:intergenic | 50.0% | |
| GGCCCCACTAAGAGATTTCA+TGG | - | tig0041095:8070-8089 | Msa1460820:intron | 50.0% | |
| ! | ACTGTGGGCTAATAGGGCAT+GGG | + | tig0041095:8232-8251 | Msa1460820:intergenic | 50.0% |
| ! | AACTGTGGGCTAATAGGGCA+TGG | + | tig0041095:8233-8252 | Msa1460820:intergenic | 50.0% |
| ! | CTTGGTTCTTGGTCCATGCT+TGG | + | tig0041095:8297-8316 | Msa1460820:intergenic | 50.0% |
| ACCATGAGGATGGTCCATGA+TGG | - | tig0041095:8565-8584 | Msa1460820:intron | 50.0% | |
| TCCATCATGGACCATCCTCA+TGG | + | tig0041095:8569-8588 | Msa1460820:intergenic | 50.0% | |
| ! | GTCCATGATGGAAGTCACCA+AGG | - | tig0041095:8577-8596 | Msa1460820:intron | 50.0% |
| ! | CTCCTTGGTGACTTCCATCA+TGG | + | tig0041095:8582-8601 | Msa1460820:intergenic | 50.0% |
| !!! | TTTTTGGGTGTCTCTGGGTG+GGG | + | tig0041095:8873-8892 | Msa1460820:intergenic | 50.0% |
| !!! | GTTTTTGGGTGTCTCTGGGT+GGG | + | tig0041095:8874-8893 | Msa1460820:intergenic | 50.0% |
| TGTCGTCAACGTTGCAGATC+CGG | - | tig0041095:9365-9384 | Msa1460820:intron | 50.0% | |
| GTCCACAAACCCACTTGCTT+CGG | + | tig0041095:9715-9734 | Msa1460820:intergenic | 50.0% | |
| ! | AAGTGGGTTTGTGGACGAAG+CGG | - | tig0041095:9719-9738 | Msa1460820:intron | 50.0% |
| ! | AAAAAAGGCACAAGCCCCAG+AGG | - | tig0041095:10693-10712 | Msa1460820:intron | 50.0% |
| TTCGGCAGCAAATCTGGACA+GGG | + | tig0041095:10776-10795 | Msa1460820:intergenic | 50.0% | |
| GAATGCTTCGGCAGCAAATC+TGG | + | tig0041095:10782-10801 | Msa1460820:intergenic | 50.0% | |
| TGTCACCACACCGAATGCTT+CGG | + | tig0041095:10794-10813 | Msa1460820:intergenic | 50.0% | |
| ACAAGTGTGAGGAAGAGGCA+AGG | + | tig0041095:11084-11103 | Msa1460820:intergenic | 50.0% | |
| ACTTGGAAGCTAGGACTAGG+AGG | - | tig0041095:11658-11677 | Msa1460820:intron | 50.0% | |
| ATACCTACCAGGACTAAGCC+GGG | + | tig0041095:11760-11779 | Msa1460820:intergenic | 50.0% | |
| !! | ACTTGGGTTGGGGATTGCAT+GGG | + | tig0041095:11927-11946 | Msa1460820:intergenic | 50.0% |
| !! | AACTTGGGTTGGGGATTGCA+TGG | + | tig0041095:11928-11947 | Msa1460820:intergenic | 50.0% |
| GTAAGTGTGGAGCTGATGGC+TGG | + | tig0041095:5931-5950 | Msa0158910:intergenic | 55.0% | |
| GGAGGTAAGTGTGGAGCTGA+TGG | + | tig0041095:5935-5954 | Msa0158910:intergenic | 55.0% | |
| ! | GGGGGATATGCCATTTCTGG+TGG | + | tig0041095:6019-6038 | Msa1460820:intergenic | 55.0% |
| CCCCCAAGTCAAGCACAAGA+TGG | - | tig0041095:6034-6053 | Msa1460820:CDS | 55.0% | |
| CTCTCTGTCAGTGCCAGAAC+CGG | + | tig0041095:6091-6110 | Msa1460820:intergenic | 55.0% | |
| ! | CAAGAGTGTGGGGAGCTGAT+TGG | + | tig0041095:6478-6497 | Msa1460820:intergenic | 55.0% |
| GCCCTCAACCATGCTCCTTT+AGG | - | tig0041095:8149-8168 | Msa1460820:intron | 55.0% | |
| ! | CTGTGGGCTAATAGGGCATG+GGG | + | tig0041095:8231-8250 | Msa1460820:intergenic | 55.0% |
| TCTCTGGGTGGGGTGTGTTT+GGG | + | tig0041095:8863-8882 | Msa1460820:intergenic | 55.0% | |
| !!! | GGTTTTTGGGTGTCTCTGGG+TGG | + | tig0041095:8875-8894 | Msa1460820:intergenic | 55.0% |
| ! | GAAGAAAGGGGTGACGGCTA+GGG | + | tig0041095:9196-9215 | Msa1460820:intergenic | 55.0% |
| ! | AGAAGAAAGGGGTGACGGCT+AGG | + | tig0041095:9197-9216 | Msa1460820:intergenic | 55.0% |
| ! | GACCGAAGCAAGTGGGTTTG+TGG | - | tig0041095:9710-9729 | Msa1460820:intron | 55.0% |
| TGTGGACGAAGCGGAAGGTT+CGG | - | tig0041095:9728-9747 | Msa1460820:intron | 55.0% | |
| GAAGGTTCGGAGGATACAGC+TGG | - | tig0041095:9741-9760 | Msa1460820:intron | 55.0% | |
| ! | CTGCTGCTGCTGTTGCTTGA+TGG | - | tig0041095:9927-9946 | Msa1460820:intron | 55.0% |
| CACAAGCCCCAGAGGATTTC+TGG | - | tig0041095:10701-10720 | Msa1460820:intron | 55.0% | |
| ACGCATGCTCTCTGACAGCA+TGG | + | tig0041095:10730-10749 | Msa1460820:intergenic | 55.0% | |
| ! | ATGCTGTCAGAGAGCATGCG+TGG | - | tig0041095:10729-10748 | Msa1460820:intron | 55.0% |
| TCGGCAGCAAATCTGGACAG+GGG | + | tig0041095:10775-10794 | Msa1460820:intergenic | 55.0% | |
| CTTCGGCAGCAAATCTGGAC+AGG | + | tig0041095:10777-10796 | Msa1460820:intergenic | 55.0% | |
| CCAGTCTCCAACCTCTGCAA+GGG | + | tig0041095:11123-11142 | Msa1460820:intergenic | 55.0% | |
| TCCAGTCTCCAACCTCTGCA+AGG | + | tig0041095:11124-11143 | Msa1460820:intergenic | 55.0% | |
| GAAAATGCCCGGCTTAGTCC+TGG | - | tig0041095:11750-11769 | Msa1460820:CDS | 55.0% | |
| CACTACGGCTGGGAGAGAAA+AGG | + | tig0041095:11869-11888 | Msa1460820:intergenic | 55.0% | |
| !! | ATCCGGGTGGTGTTGCACTA+CGG | + | tig0041095:11884-11903 | Msa1460820:intergenic | 55.0% |
| ACCTGGAAGTGACGGTGATC+CGG | + | tig0041095:11901-11920 | Msa1460820:intergenic | 55.0% | |
| GATCACCGTCACTTCCAGGT+TGG | - | tig0041095:11901-11920 | Msa1460820:CDS | 55.0% | |
| ATGGGCCAACCTGGAAGTGA+CGG | + | tig0041095:11909-11928 | Msa1460820:intergenic | 55.0% | |
| CAATGGTGGCACGGTGGATG+TGG | + | tig0041095:5884-5903 | Msa0158910:intergenic | 60.0% | |
| GAGCAACAATGGTGGCACGG+TGG | + | tig0041095:5890-5909 | Msa0158910:intergenic | 60.0% | |
| ! | TGATGGCTGGGTGGTACTGG+TGG | + | tig0041095:5918-5937 | Msa0158910:intergenic | 60.0% |
| AGCTGATGGCTGGGTGGTAC+TGG | + | tig0041095:5921-5940 | Msa0158910:intergenic | 60.0% | |
| GCCCAACCCTTTGCAGTTCC+TGG | - | tig0041095:7811-7830 | Msa1460820:intron | 60.0% | |
| GGGCTAATAGGGCATGGGGA+AGG | + | tig0041095:8227-8246 | Msa1460820:intergenic | 60.0% | |
| GTCTCTGGGTGGGGTGTGTT+TGG | + | tig0041095:8864-8883 | Msa1460820:intergenic | 60.0% | |
| GGGTTTGTGGACGAAGCGGA+AGG | - | tig0041095:9723-9742 | Msa1460820:intron | 60.0% | |
| CGGAGGATACAGCTGGAGAC+AGG | - | tig0041095:9748-9767 | Msa1460820:intron | 60.0% | |
| CAGCAGTAGCGCGAGGAGAA+AGG | + | tig0041095:9913-9932 | Msa1460820:intergenic | 60.0% | |
| ! | TGCTGCCGAAGCATTCGGTG+TGG | - | tig0041095:10786-10805 | Msa1460820:intron | 60.0% |
| ! | CCAACCTCTGCAAGGGTGCA+CGG | + | tig0041095:11116-11135 | Msa1460820:intergenic | 60.0% |
| CCCTTGCAGAGGTTGGAGAC+TGG | - | tig0041095:11120-11139 | Msa1460820:intron | 60.0% | |
| ATGCCCGGCTTAGTCCTGGT+AGG | - | tig0041095:11754-11773 | Msa1460820:CDS | 60.0% | |
| !! | GGTGGTGTTGCACTACGGCT+GGG | + | tig0041095:11879-11898 | Msa1460820:intergenic | 60.0% |
| AGCCGTAGTGCAACACCACC+CGG | - | tig0041095:11879-11898 | Msa1460820:CDS | 60.0% | |
| CCTGGAAGTGACGGTGATCC+GGG | + | tig0041095:11900-11919 | Msa1460820:intergenic | 60.0% | |
| TGGTGGCACGGTGGATGTGG+AGG | + | tig0041095:5881-5900 | Msa0158910:intergenic | 65.0% | |
| GTGTGGAGCTGATGGCTGGG+TGG | + | tig0041095:5927-5946 | Msa0158910:intergenic | 65.0% | |
| GGACGAAGCGGAAGGTTCGG+AGG | - | tig0041095:9731-9750 | Msa1460820:intron | 65.0% | |
| ACAGCAGCAGCAGTAGCGCG+AGG | + | tig0041095:9920-9939 | Msa1460820:intergenic | 65.0% | |
| TCCTCCGTGCACCCTTGCAG+AGG | - | tig0041095:11109-11128 | Msa1460820:intron | 65.0% | |
| ! | ACCTCTGCAAGGGTGCACGG+AGG | + | tig0041095:11113-11132 | Msa1460820:intergenic | 65.0% |
| CCGTGCACCCTTGCAGAGGT+TGG | - | tig0041095:11113-11132 | Msa1460820:intron | 65.0% | |
| !! | GGGTGGTGTTGCACTACGGC+TGG | + | tig0041095:11880-11899 | Msa1460820:intergenic | 65.0% |
| GGAAGTGACGGTGATCCGGG+TGG | + | tig0041095:11897-11916 | Msa1460820:intergenic | 65.0% | |
| CCCGGATCACCGTCACTTCC+AGG | - | tig0041095:11897-11916 | Msa1460820:CDS | 65.0% | |
| GGGGATTGCATGGGCCAACC+TGG | + | tig0041095:11918-11937 | Msa1460820:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041095 | gene | 5821 | 11959 | 5821 | ID=Msa1460820;Name=Msa1460820 |
| tig0041095 | mRNA | 5821 | 11959 | 5821 | ID=Msa1460820-mRNA-1;Parent=Msa1460820;Name=Msa1460820-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|0|0|1|1|1|3|0|498 |
| tig0041095 | exon | 11662 | 11959 | 11662 | ID=Msa1460820-mRNA-1:exon:22900;Parent=Msa1460820-mRNA-1 |
| tig0041095 | exon | 6882 | 7100 | 6882 | ID=Msa1460820-mRNA-1:exon:22899;Parent=Msa1460820-mRNA-1 |
| tig0041095 | exon | 5821 | 6800 | 5821 | ID=Msa1460820-mRNA-1:exon:22898;Parent=Msa1460820-mRNA-1 |
| tig0041095 | CDS | 11662 | 11959 | 11662 | ID=Msa1460820-mRNA-1:cds;Parent=Msa1460820-mRNA-1 |
| tig0041095 | CDS | 6882 | 7100 | 6882 | ID=Msa1460820-mRNA-1:cds;Parent=Msa1460820-mRNA-1 |
| tig0041095 | CDS | 5821 | 6800 | 5821 | ID=Msa1460820-mRNA-1:cds;Parent=Msa1460820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
