Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351640 | XP_003592876.1 | 97.761 | 402 | 2 | 2 | 62 | 456 | 1 | 402 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351640 | Q1SKU3 | 97.761 | 402 | 2 | 2 | 62 | 456 | 1 | 402 | 0.0 | 786 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044710 | Msa1351640 | -0.801301 | 9.602730e-49 | -8.615850e-47 |
| Msa1351640 | Msa1358610 | 0.810186 | 1.306618e-50 | -8.615850e-47 |
| Msa1351640 | Msa1375060 | 0.985938 | 3.786601e-165 | -8.615850e-47 |
| Msa1351640 | Msa1392330 | 0.986964 | 1.403475e-168 | -8.615850e-47 |
| Msa1351640 | Msa1460820 | 0.987280 | 1.083667e-169 | -8.615850e-47 |
| Msa0131050 | Msa1351640 | 0.845282 | 4.475058e-59 | -8.615850e-47 |
| Msa0138390 | Msa1351640 | 0.833255 | 5.923306e-56 | -8.615850e-47 |
| Msa0146990 | Msa1351640 | 0.800638 | 1.311900e-48 | -8.615850e-47 |
| Msa0182930 | Msa1351640 | -0.804652 | 1.949298e-49 | -8.615850e-47 |
| Msa1282920 | Msa1351640 | -0.801530 | 8.619880e-49 | -8.615850e-47 |
| Msa0376450 | Msa1351640 | 0.819914 | 9.041117e-53 | -8.615850e-47 |
| Msa0465800 | Msa1351640 | -0.803728 | 3.034576e-49 | -8.615850e-47 |
| Msa0471720 | Msa1351640 | 0.820871 | 5.453515e-53 | -8.615850e-47 |
| Msa0472740 | Msa1351640 | -0.812279 | 4.591342e-51 | -8.615850e-47 |
| Msa1009440 | Msa1351640 | 0.810405 | 1.171492e-50 | -8.615850e-47 |
| Msa1050780 | Msa1351640 | 0.800191 | 1.618446e-48 | -8.615850e-47 |
| Msa1098180 | Msa1351640 | 0.885082 | 1.104783e-71 | -8.615850e-47 |
| Msa0240450 | Msa1351640 | 0.827233 | 1.751833e-54 | -8.615850e-47 |
| Msa0270030 | Msa1351640 | 0.971465 | 3.308513e-133 | -8.615850e-47 |
| Msa1119250 | Msa1351640 | 0.831370 | 1.734523e-55 | -8.615850e-47 |
| Msa1119300 | Msa1351640 | 0.835202 | 1.924620e-56 | -8.615850e-47 |
| Msa1138240 | Msa1351640 | 0.856221 | 3.725829e-62 | -8.615850e-47 |
| Msa0516510 | Msa1351640 | 0.813040 | 3.129745e-51 | -8.615850e-47 |
| Msa0967650 | Msa1351640 | 0.821819 | 3.296119e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351640 | MtrunA17_Chr2g0276811 | 97.163 | 282 | 1 | 2 | 182 | 456 | 46 | 327 | 0.0 | 546 |
| Msa1351640 | MtrunA17_Chr2g0276811 | 78.689 | 61 | 12 | 1 | 62 | 121 | 1 | 61 | 2.20e-14 | 73.9 |
| Msa1351640 | MtrunA17_Chr4g0042541 | 71.233 | 365 | 86 | 4 | 40 | 396 | 7 | 360 | 0.0 | 509 |
| Msa1351640 | MtrunA17_Chr4g0042531 | 69.755 | 367 | 93 | 3 | 40 | 399 | 7 | 362 | 1.13e-180 | 509 |
| Msa1351640 | MtrunA17_Chr3g0127551 | 30.333 | 300 | 186 | 6 | 64 | 354 | 7 | 292 | 3.11e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351640 | AT1G57680.3 | 56.286 | 350 | 141 | 4 | 62 | 400 | 1 | 349 | 5.98e-118 | 350 |
| Msa1351640 | AT1G57680.1 | 56.286 | 350 | 141 | 4 | 62 | 400 | 1 | 349 | 5.98e-118 | 350 |
| Msa1351640 | AT1G57680.2 | 56.286 | 350 | 141 | 4 | 62 | 400 | 1 | 349 | 5.98e-118 | 350 |
Find 116 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCACTTGTATGTTGTTC+TGG | 0.136495 | tig0012345:+5545 | Msa1351640:CDS |
| CACAAGCCCCAGAGGATTTC+TGG | 0.199571 | tig0012345:+4679 | Msa1351640:CDS |
| GTTGAATAAAACCTTGATTA+TGG | 0.209985 | tig0012345:-4866 | None:intergenic |
| AATCAATCTTAGAGCATTTC+TGG | 0.238365 | tig0012345:+4516 | Msa1351640:CDS |
| TTACTTAGTACCGTTCTTCT+TGG | 0.246463 | tig0012345:+5314 | Msa1351640:CDS |
| TTTGTGTTTCCTTCCATTAA+GGG | 0.263956 | tig0012345:+5448 | Msa1351640:CDS |
| CATTCATCTTATTTGTAATC+TGG | 0.268286 | tig0012345:+4925 | Msa1351640:CDS |
| GACGTGCCCTTCACTTAAAA+TGG | 0.278233 | tig0012345:+4985 | Msa1351640:CDS |
| ACCTCAGTTAGACAAGAATA+AGG | 0.305847 | tig0012345:+5217 | Msa1351640:CDS |
| GGGGTCTAGGTGAAATTATT+AGG | 0.311728 | tig0012345:+4949 | Msa1351640:CDS |
| CTGGAATTATGAGCAGAAAA+TGG | 0.319368 | tig0012345:+5117 | Msa1351640:CDS |
| GAATGCTTCGGCAGCAAATC+TGG | 0.324517 | tig0012345:-4757 | None:intergenic |
| TTGCACTTGTATGTTGTTCT+GGG | 0.341889 | tig0012345:+5546 | Msa1351640:CDS |
| CATGCGTGGAATCTGTATTT+CGG | 0.345778 | tig0012345:+4721 | Msa1351640:CDS |
| CCCGGATCACCGTCACTTCC+AGG | 0.354198 | tig0012345:+5872 | Msa1351640:CDS |
| TCAACAAAGGTTTACAGAAA+AGG | 0.373868 | tig0012345:+5402 | Msa1351640:CDS |
| TTTGTAATCTGGTGGGGTCT+AGG | 0.374213 | tig0012345:+4936 | Msa1351640:CDS |
| ATGCGTGGAATCTGTATTTC+GGG | 0.375518 | tig0012345:+4722 | Msa1351640:CDS |
| CAACAAAGGTTTACAGAAAA+GGG | 0.378116 | tig0012345:+5403 | Msa1351640:CDS |
| CAAACCAAGAAGAATCAAAA+TGG | 0.383211 | tig0012345:-4805 | None:intergenic |
| GGGTGGTGTTGCACTACGGC+TGG | 0.385070 | tig0012345:-5852 | None:intergenic |
| ACCTGGAAGTGACGGTGATC+CGG | 0.386511 | tig0012345:-5873 | None:intergenic |
| TATCACTAGCCAGAGTCATT+TGG | 0.389755 | tig0012345:+5688 | Msa1351640:CDS |
| AGTTGCAGATTGTTTAGCTC+TGG | 0.392033 | tig0012345:+5598 | Msa1351640:CDS |
| AAGTCAGGATAATGGCAAAA+AGG | 0.395416 | tig0012345:-5337 | None:intergenic |
| GAAAAGGGTGTTGCTTCAAC+TGG | 0.400149 | tig0012345:+5800 | Msa1351640:CDS |
| CCTGGAAGTGACGGTGATCC+GGG | 0.407160 | tig0012345:-5872 | None:intergenic |
| ATGGCACAATAACTTGGGTT+GGG | 0.415265 | tig0012345:-5910 | None:intergenic |
| CATCTTATTTGTAATCTGGT+GGG | 0.424700 | tig0012345:+4929 | Msa1351640:CDS |
| AGATTTGCTGCCGAAGCATT+CGG | 0.431030 | tig0012345:+4759 | Msa1351640:CDS |
| TGTGATGAGTGGGACTTTGT+TGG | 0.432433 | tig0012345:-3764 | None:intergenic |
| AACTTGGGTTGGGGATTGCA+TGG | 0.433060 | tig0012345:-5900 | None:intergenic |
| AATGACTCTGGCTAGTGATA+AGG | 0.433949 | tig0012345:-5685 | None:intergenic |
| GTCCACAAACCCACTTGCTT+CGG | 0.437337 | tig0012345:-3699 | None:intergenic |
| TCATCTTATTTGTAATCTGG+TGG | 0.438642 | tig0012345:+4928 | Msa1351640:CDS |
| ATGACTCTGGCTAGTGATAA+GGG | 0.438994 | tig0012345:-5684 | None:intergenic |
| CCGTGCACCCTTGCAGAGGT+TGG | 0.447505 | tig0012345:+5091 | Msa1351640:CDS |
| ATCTTATTTGTAATCTGGTG+GGG | 0.453260 | tig0012345:+4930 | Msa1351640:CDS |
| CGCTCTCGAATCCATAATCA+AGG | 0.454403 | tig0012345:+4855 | Msa1351640:CDS |
| TGTGGACGAAGCGGAAGGTT+CGG | 0.455528 | tig0012345:+3715 | Msa1351640:CDS |
| GCTGCTATGGCACAATAACT+TGG | 0.457884 | tig0012345:-5916 | None:intergenic |
| CCCTTGCAGAGGTTGGAGAC+TGG | 0.459243 | tig0012345:+5098 | Msa1351640:CDS |
| GAAATACAAGTGTGAGGAAG+AGG | 0.466208 | tig0012345:-5064 | None:intergenic |
| CATGGATACCAGAAATCCTC+TGG | 0.469355 | tig0012345:-4687 | None:intergenic |
| GAAGAACGGTACTAAGTAAA+GGG | 0.471576 | tig0012345:-5310 | None:intergenic |
| CTTCGGCAGCAAATCTGGAC+AGG | 0.473877 | tig0012345:-4752 | None:intergenic |
| GACCGAAGCAAGTGGGTTTG+TGG | 0.475339 | tig0012345:+3697 | Msa1351640:CDS |
| AGAGCTAAACAATCTGCAAC+TGG | 0.476529 | tig0012345:-5596 | None:intergenic |
| GTTGCAGATTGTTTAGCTCT+GGG | 0.488179 | tig0012345:+5599 | Msa1351640:CDS |
| AGAAGAACGGTACTAAGTAA+AGG | 0.495985 | tig0012345:-5311 | None:intergenic |
| GGGGATTGCATGGGCCAACC+TGG | 0.496851 | tig0012345:-5890 | None:intergenic |
| TATGGCACAATAACTTGGGT+TGG | 0.509350 | tig0012345:-5911 | None:intergenic |
| AAGGTAGGAAGTCAGGATAA+TGG | 0.511696 | tig0012345:-5345 | None:intergenic |
| TGTCACCACACCGAATGCTT+CGG | 0.512183 | tig0012345:-4769 | None:intergenic |
| CGGAGGATACAGCTGGAGAC+AGG | 0.515319 | tig0012345:+3735 | Msa1351640:CDS |
| TGGCACAATAACTTGGGTTG+GGG | 0.518698 | tig0012345:-5909 | None:intergenic |
| CCTCAGTTAGACAAGAATAA+GGG | 0.519352 | tig0012345:+5218 | Msa1351640:CDS |
| GAAAATGCCCGGCTTAGTCC+TGG | 0.529972 | tig0012345:+5725 | Msa1351640:CDS |
| CATTATCTTCCAAATGACTC+TGG | 0.530554 | tig0012345:-5697 | None:intergenic |
| CCAACCTCTGCAAGGGTGCA+CGG | 0.530849 | tig0012345:-5091 | None:intergenic |
| GCTTCAAACATAAAATGCTC+AGG | 0.535570 | tig0012345:-5503 | None:intergenic |
| AAAAGCTGAAGAAGAAACAT+TGG | 0.535607 | tig0012345:-5179 | None:intergenic |
| GGTGGTGTTGCACTACGGCT+GGG | 0.535611 | tig0012345:-5851 | None:intergenic |
| TCCTCCGTGCACCCTTGCAG+AGG | 0.540397 | tig0012345:+5087 | Msa1351640:CDS |
| ACTTGGGTTGGGGATTGCAT+GGG | 0.547759 | tig0012345:-5899 | None:intergenic |
| AATACCTACCAGGACTAAGC+CGG | 0.548682 | tig0012345:-5733 | None:intergenic |
| TCCAGTCTCCAACCTCTGCA+AGG | 0.553487 | tig0012345:-5099 | None:intergenic |
| GAAGGTTCGGAGGATACAGC+TGG | 0.553936 | tig0012345:+3728 | Msa1351640:CDS |
| CACTACGGCTGGGAGAGAAA+AGG | 0.561488 | tig0012345:-5841 | None:intergenic |
| ATCTACAAGACTTGGAAGCT+AGG | 0.563095 | tig0012345:+5624 | Msa1351640:CDS |
| ATCCGGGTGGTGTTGCACTA+CGG | 0.565464 | tig0012345:-5856 | None:intergenic |
| AGCCGTAGTGCAACACCACC+CGG | 0.570029 | tig0012345:+5854 | Msa1351640:CDS |
| TGCCCTTCACTTAAAATGGA+AGG | 0.570691 | tig0012345:+4989 | Msa1351640:CDS |
| TAAGTAAAGGGTAAGTACAC+AGG | 0.570980 | tig0012345:-5298 | None:intergenic |
| ATGTTATATTGTATCCAACA+TGG | 0.571201 | tig0012345:+5025 | Msa1351640:CDS |
| TCTGGGAAATCTACAAGACT+TGG | 0.572100 | tig0012345:+5616 | Msa1351640:CDS |
| ATGGATACCAGAAATCCTCT+GGG | 0.580053 | tig0012345:-4686 | None:intergenic |
| TTCGGCAGCAAATCTGGACA+GGG | 0.581106 | tig0012345:-4751 | None:intergenic |
| GATTCATCTGAATACCTACC+AGG | 0.582625 | tig0012345:-5743 | None:intergenic |
| TTGAAATTAGTCATCAACAA+AGG | 0.583602 | tig0012345:+5389 | Msa1351640:CDS |
| TGTTATATTGTATCCAACAT+GGG | 0.587232 | tig0012345:+5026 | Msa1351640:CDS |
| AATGCAATTCTAATAATCCA+AGG | 0.594476 | tig0012345:-4906 | None:intergenic |
| ATACCTACCAGGACTAAGCC+GGG | 0.594514 | tig0012345:-5732 | None:intergenic |
| GATCACCGTCACTTCCAGGT+TGG | 0.595185 | tig0012345:+5876 | Msa1351640:CDS |
| TCAGATGAATCAACAAAGCG+TGG | 0.595190 | tig0012345:+5755 | Msa1351640:CDS |
| ACGCATGCTCTCTGACAGCA+TGG | 0.601326 | tig0012345:-4705 | None:intergenic |
| CCAGTCTCCAACCTCTGCAA+GGG | 0.602446 | tig0012345:-5098 | None:intergenic |
| CTGCTATGGCACAATAACTT+GGG | 0.603852 | tig0012345:-5915 | None:intergenic |
| ACTTGGAAGCTAGGACTAGG+AGG | 0.606767 | tig0012345:+5633 | Msa1351640:CDS |
| AGATAGATGACCGAAGCAAG+TGG | 0.607051 | tig0012345:+3689 | None:intergenic |
| GGGTTTGTGGACGAAGCGGA+AGG | 0.609296 | tig0012345:+3710 | Msa1351640:CDS |
| ATGCTGTCAGAGAGCATGCG+TGG | 0.609403 | tig0012345:+4707 | Msa1351640:CDS |
| CTTGATTATGGATTCGAGAG+CGG | 0.616039 | tig0012345:-4854 | None:intergenic |
| CCCTTATTCTTGTCTAACTG+AGG | 0.619051 | tig0012345:-5218 | None:intergenic |
| GCTGAAGAAGAAACATTGGA+AGG | 0.623753 | tig0012345:-5175 | None:intergenic |
| AAGTAAAGGGTAAGTACACA+GGG | 0.626323 | tig0012345:-5297 | None:intergenic |
| ATAATGTTGAGGAAAATGCC+CGG | 0.641939 | tig0012345:+5714 | Msa1351640:CDS |
| AAGACTTGGAAGCTAGGACT+AGG | 0.643546 | tig0012345:+5630 | Msa1351640:CDS |
| AAGTGGGTTTGTGGACGAAG+CGG | 0.650636 | tig0012345:+3706 | Msa1351640:CDS |
| AGGTTCTGCAAATCCCATGT+TGG | 0.653113 | tig0012345:-5039 | None:intergenic |
| CTAAACAATCTGCAACTGGA+CGG | 0.656325 | tig0012345:-5592 | None:intergenic |
| GGACGAAGCGGAAGGTTCGG+AGG | 0.656738 | tig0012345:+3718 | Msa1351640:CDS |
| TCATTTGGAAGATAATGTTG+AGG | 0.658087 | tig0012345:+5703 | Msa1351640:CDS |
| GATAGATGACCGAAGCAAGT+GGG | 0.660856 | tig0012345:+3690 | None:intergenic |
| CAGATGAATCAACAAAGCGT+GGG | 0.669113 | tig0012345:+5756 | Msa1351640:CDS |
| TCGGCAGCAAATCTGGACAG+GGG | 0.670257 | tig0012345:-4750 | None:intergenic |
| ATGGGCCAACCTGGAAGTGA+CGG | 0.673283 | tig0012345:-5881 | None:intergenic |
| AAGAAAAGCCAAGAAAACAA+AGG | 0.675305 | tig0012345:-5525 | None:intergenic |
| ACAAGTGTGAGGAAGAGGCA+AGG | 0.681559 | tig0012345:-5059 | None:intergenic |
| GCTGTGCTTGTAAAATAATG+CGG | 0.697719 | tig0012345:-5254 | None:intergenic |
| GGAGGAGAAATACAAGTGTG+AGG | 0.697754 | tig0012345:-5070 | None:intergenic |
| TGCTGCCGAAGCATTCGGTG+TGG | 0.699184 | tig0012345:+4764 | Msa1351640:CDS |
| ACCTCTGCAAGGGTGCACGG+AGG | 0.720964 | tig0012345:-5088 | None:intergenic |
| ATGCCCGGCTTAGTCCTGGT+AGG | 0.725216 | tig0012345:+5729 | Msa1351640:CDS |
| GGAAGTGACGGTGATCCGGG+TGG | 0.749090 | tig0012345:-5869 | None:intergenic |
| TGGATACCAGAAATCCTCTG+GGG | 0.759997 | tig0012345:-4685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTCCAAATAATTATATA+GGG | - | tig0012345:4188-4207 | None:intergenic | 15.0% |
| !! | TGAATTCCAAATAATTATAT+AGG | - | tig0012345:4189-4208 | None:intergenic | 15.0% |
| !! | GAATTCCAAATAATTATATA+GGG | - | tig0012345:4188-4207 | None:intergenic | 15.0% |
| !! | TGAATTCCAAATAATTATAT+AGG | - | tig0012345:4189-4208 | None:intergenic | 15.0% |
| !! | TAATTATATAGGGTTAAGAA+GGG | - | tig0012345:4178-4197 | None:intergenic | 20.0% |
| !! | ATAATTATATAGGGTTAAGA+AGG | - | tig0012345:4179-4198 | None:intergenic | 20.0% |
| !! | CTTAACCCTATATAATTATT+TGG | + | tig0012345:4180-4199 | Msa1351640:intron | 20.0% |
| !!! | TTGTTTTTAGATGTTTGAAT+TGG | + | tig0012345:4491-4510 | Msa1351640:intron | 20.0% |
| !!! | TGTTTTTAGATGTTTGAATT+GGG | + | tig0012345:4492-4511 | Msa1351640:intron | 20.0% |
| !! | CCAATATCAATAACTAATAA+TGG | - | tig0012345:4651-4670 | None:intergenic | 20.0% |
| !! | CCATTATTAGTTATTGATAT+TGG | + | tig0012345:4648-4667 | Msa1351640:intron | 20.0% |
| !! | AGTTATTGATATTGGAAAAA+AGG | + | tig0012345:4656-4675 | Msa1351640:intron | 20.0% |
| !!! | ATTCAACTCAATTATTTTAG+TGG | + | tig0012345:4882-4901 | Msa1351640:CDS | 20.0% |
| !! | TAATTATATAGGGTTAAGAA+GGG | - | tig0012345:4178-4197 | None:intergenic | 20.0% |
| !! | ATAATTATATAGGGTTAAGA+AGG | - | tig0012345:4179-4198 | None:intergenic | 20.0% |
| !! | CTTAACCCTATATAATTATT+TGG | + | tig0012345:4180-4199 | Msa1351640:intron | 20.0% |
| !!! | TTGTTTTTAGATGTTTGAAT+TGG | + | tig0012345:4491-4510 | Msa1351640:intron | 20.0% |
| !!! | TGTTTTTAGATGTTTGAATT+GGG | + | tig0012345:4492-4511 | Msa1351640:intron | 20.0% |
| !! | CCAATATCAATAACTAATAA+TGG | - | tig0012345:4651-4670 | None:intergenic | 20.0% |
| !! | CCATTATTAGTTATTGATAT+TGG | + | tig0012345:4648-4667 | Msa1351640:intron | 20.0% |
| !! | AGTTATTGATATTGGAAAAA+AGG | + | tig0012345:4656-4675 | Msa1351640:intron | 20.0% |
| !!! | ATTCAACTCAATTATTTTAG+TGG | + | tig0012345:4882-4901 | Msa1351640:CDS | 20.0% |
| ! | GTAAATAACACGTTTGATTA+GGG | - | tig0012345:4058-4077 | None:intergenic | 25.0% |
| ! | AGTAAATAACACGTTTGATT+AGG | - | tig0012345:4059-4078 | None:intergenic | 25.0% |
| !! | TGATGATGATGATTATGAAT+CGG | - | tig0012345:4109-4128 | None:intergenic | 25.0% |
| !! | TAATAAAGAGAAAGCATGTA+TGG | - | tig0012345:4241-4260 | None:intergenic | 25.0% |
| ! | ACAAATCTCATTGAACAAAA+TGG | - | tig0012345:4445-4464 | None:intergenic | 25.0% |
| ! | GTTGAATAAAACCTTGATTA+TGG | - | tig0012345:4869-4888 | None:intergenic | 25.0% |
| ! | AATGCAATTCTAATAATCCA+AGG | - | tig0012345:4909-4928 | None:intergenic | 25.0% |
| !! | CATTCATCTTATTTGTAATC+TGG | + | tig0012345:4925-4944 | Msa1351640:CDS | 25.0% |
| ! | ATGTTATATTGTATCCAACA+TGG | + | tig0012345:5025-5044 | Msa1351640:CDS | 25.0% |
| ! | TGTTATATTGTATCCAACAT+GGG | + | tig0012345:5026-5045 | Msa1351640:CDS | 25.0% |
| ! | TTGAAATTAGTCATCAACAA+AGG | + | tig0012345:5389-5408 | Msa1351640:CDS | 25.0% |
| ! | GTAAATAACACGTTTGATTA+GGG | - | tig0012345:4058-4077 | None:intergenic | 25.0% |
| ! | AGTAAATAACACGTTTGATT+AGG | - | tig0012345:4059-4078 | None:intergenic | 25.0% |
| !! | TGATGATGATGATTATGAAT+CGG | - | tig0012345:4109-4128 | None:intergenic | 25.0% |
| !! | TAATAAAGAGAAAGCATGTA+TGG | - | tig0012345:4241-4260 | None:intergenic | 25.0% |
| ! | ACAAATCTCATTGAACAAAA+TGG | - | tig0012345:4445-4464 | None:intergenic | 25.0% |
| ! | GTTGAATAAAACCTTGATTA+TGG | - | tig0012345:4869-4888 | None:intergenic | 25.0% |
| ! | AATGCAATTCTAATAATCCA+AGG | - | tig0012345:4909-4928 | None:intergenic | 25.0% |
| !! | CATTCATCTTATTTGTAATC+TGG | + | tig0012345:4925-4944 | Msa1351640:CDS | 25.0% |
| ! | ATGTTATATTGTATCCAACA+TGG | + | tig0012345:5025-5044 | Msa1351640:CDS | 25.0% |
| ! | TGTTATATTGTATCCAACAT+GGG | + | tig0012345:5026-5045 | Msa1351640:CDS | 25.0% |
| ! | TTGAAATTAGTCATCAACAA+AGG | + | tig0012345:5389-5408 | Msa1351640:CDS | 25.0% |
| ! | AATCAATCTTAGAGCATTTC+TGG | + | tig0012345:4516-4535 | Msa1351640:CDS | 30.0% |
| CAAACCAAGAAGAATCAAAA+TGG | - | tig0012345:4808-4827 | None:intergenic | 30.0% | |
| !!! | TCAATTATTTTAGTGGTCCT+TGG | + | tig0012345:4889-4908 | Msa1351640:CDS | 30.0% |
| ! | TCATCTTATTTGTAATCTGG+TGG | + | tig0012345:4928-4947 | Msa1351640:CDS | 30.0% |
| ! | CATCTTATTTGTAATCTGGT+GGG | + | tig0012345:4929-4948 | Msa1351640:CDS | 30.0% |
| ! | ATCTTATTTGTAATCTGGTG+GGG | + | tig0012345:4930-4949 | Msa1351640:CDS | 30.0% |
| !! | TTCCTTCCATTTTAAGTGAA+GGG | - | tig0012345:4994-5013 | None:intergenic | 30.0% |
| !! | TTTCCTTCCATTTTAAGTGA+AGG | - | tig0012345:4995-5014 | None:intergenic | 30.0% |
| AAAAGCTGAAGAAGAAACAT+TGG | - | tig0012345:5182-5201 | None:intergenic | 30.0% | |
| !! | TCTTCAGCTTTTTGTCATTT+TGG | + | tig0012345:5190-5209 | Msa1351640:CDS | 30.0% |
| !! | ATTATTTTACAAGCACAGCA+AGG | + | tig0012345:5258-5277 | Msa1351640:CDS | 30.0% |
| !! | TTATTTTACAAGCACAGCAA+GGG | + | tig0012345:5259-5278 | Msa1351640:CDS | 30.0% |
| TCAACAAAGGTTTACAGAAA+AGG | + | tig0012345:5402-5421 | Msa1351640:CDS | 30.0% | |
| CAACAAAGGTTTACAGAAAA+GGG | + | tig0012345:5403-5422 | Msa1351640:CDS | 30.0% | |
| ! | TTTTGTGTTTCCTTCCATTA+AGG | + | tig0012345:5447-5466 | Msa1351640:CDS | 30.0% |
| TTTGTGTTTCCTTCCATTAA+GGG | + | tig0012345:5448-5467 | Msa1351640:CDS | 30.0% | |
| ! | CTTGGTTTATCTGTTTTATC+TGG | + | tig0012345:5479-5498 | Msa1351640:CDS | 30.0% |
| AAGAAAAGCCAAGAAAACAA+AGG | - | tig0012345:5528-5547 | None:intergenic | 30.0% | |
| TCATTTGGAAGATAATGTTG+AGG | + | tig0012345:5703-5722 | Msa1351640:CDS | 30.0% | |
| ! | AATCAATCTTAGAGCATTTC+TGG | + | tig0012345:4516-4535 | Msa1351640:CDS | 30.0% |
| CAAACCAAGAAGAATCAAAA+TGG | - | tig0012345:4808-4827 | None:intergenic | 30.0% | |
| !!! | TCAATTATTTTAGTGGTCCT+TGG | + | tig0012345:4889-4908 | Msa1351640:CDS | 30.0% |
| ! | TCATCTTATTTGTAATCTGG+TGG | + | tig0012345:4928-4947 | Msa1351640:CDS | 30.0% |
| ! | CATCTTATTTGTAATCTGGT+GGG | + | tig0012345:4929-4948 | Msa1351640:CDS | 30.0% |
| ! | ATCTTATTTGTAATCTGGTG+GGG | + | tig0012345:4930-4949 | Msa1351640:CDS | 30.0% |
| !! | TTCCTTCCATTTTAAGTGAA+GGG | - | tig0012345:4994-5013 | None:intergenic | 30.0% |
| !! | TTTCCTTCCATTTTAAGTGA+AGG | - | tig0012345:4995-5014 | None:intergenic | 30.0% |
| AAAAGCTGAAGAAGAAACAT+TGG | - | tig0012345:5182-5201 | None:intergenic | 30.0% | |
| !! | TCTTCAGCTTTTTGTCATTT+TGG | + | tig0012345:5190-5209 | Msa1351640:CDS | 30.0% |
| !! | ATTATTTTACAAGCACAGCA+AGG | + | tig0012345:5258-5277 | Msa1351640:CDS | 30.0% |
| !! | TTATTTTACAAGCACAGCAA+GGG | + | tig0012345:5259-5278 | Msa1351640:CDS | 30.0% |
| TCAACAAAGGTTTACAGAAA+AGG | + | tig0012345:5402-5421 | Msa1351640:CDS | 30.0% | |
| CAACAAAGGTTTACAGAAAA+GGG | + | tig0012345:5403-5422 | Msa1351640:CDS | 30.0% | |
| ! | TTTTGTGTTTCCTTCCATTA+AGG | + | tig0012345:5447-5466 | Msa1351640:CDS | 30.0% |
| TTTGTGTTTCCTTCCATTAA+GGG | + | tig0012345:5448-5467 | Msa1351640:CDS | 30.0% | |
| ! | CTTGGTTTATCTGTTTTATC+TGG | + | tig0012345:5479-5498 | Msa1351640:CDS | 30.0% |
| AAGAAAAGCCAAGAAAACAA+AGG | - | tig0012345:5528-5547 | None:intergenic | 30.0% | |
| TCATTTGGAAGATAATGTTG+AGG | + | tig0012345:5703-5722 | Msa1351640:CDS | 30.0% | |
| TGAATGAATGTGTGATGAGT+GGG | - | tig0012345:3777-3796 | None:intergenic | 35.0% | |
| ATGAATGAATGTGTGATGAG+TGG | - | tig0012345:3778-3797 | None:intergenic | 35.0% | |
| TTGCTCCATTCTCTGAATTA+GGG | + | tig0012345:3860-3879 | Msa1351640:intron | 35.0% | |
| GAAAACCCTAATTCAGAGAA+TGG | - | tig0012345:3868-3887 | None:intergenic | 35.0% | |
| TAACACGTTTGATTAGGGTA+GGG | - | tig0012345:4053-4072 | None:intergenic | 35.0% | |
| ATAACACGTTTGATTAGGGT+AGG | - | tig0012345:4054-4073 | None:intergenic | 35.0% | |
| CGGTACTTATAGAATAGAAG+AGG | - | tig0012345:4089-4108 | None:intergenic | 35.0% | |
| TGATTCTGATTCTTAGTGGA+TGG | - | tig0012345:4316-4335 | None:intergenic | 35.0% | |
| !! | CTACTGATTCTGATTCTTAG+TGG | - | tig0012345:4320-4339 | None:intergenic | 35.0% |
| ! | ACGAAGTAAGCATGGATTAT+GGG | - | tig0012345:4414-4433 | None:intergenic | 35.0% |
| ATGTAATCATCTACCCTTGA+TGG | + | tig0012345:4582-4601 | Msa1351640:intron | 35.0% | |
| !!! | GTAGCCATTTTGATTCTTCT+TGG | + | tig0012345:4801-4820 | Msa1351640:CDS | 35.0% |
| CTGGAATTATGAGCAGAAAA+TGG | + | tig0012345:5117-5136 | Msa1351640:CDS | 35.0% | |
| !!! | CAGCTTTTTGTCATTTTGGT+TGG | + | tig0012345:5194-5213 | Msa1351640:CDS | 35.0% |
| ACCTCAGTTAGACAAGAATA+AGG | + | tig0012345:5217-5236 | Msa1351640:CDS | 35.0% | |
| CCTCAGTTAGACAAGAATAA+GGG | + | tig0012345:5218-5237 | Msa1351640:CDS | 35.0% | |
| GCTGTGCTTGTAAAATAATG+CGG | - | tig0012345:5257-5276 | None:intergenic | 35.0% | |
| ! | TATTTTACAAGCACAGCAAG+GGG | + | tig0012345:5260-5279 | Msa1351640:CDS | 35.0% |
| AAGTAAAGGGTAAGTACACA+GGG | - | tig0012345:5300-5319 | None:intergenic | 35.0% | |
| TAAGTAAAGGGTAAGTACAC+AGG | - | tig0012345:5301-5320 | None:intergenic | 35.0% | |
| GAAGAACGGTACTAAGTAAA+GGG | - | tig0012345:5313-5332 | None:intergenic | 35.0% | |
| AGAAGAACGGTACTAAGTAA+AGG | - | tig0012345:5314-5333 | None:intergenic | 35.0% | |
| TTACTTAGTACCGTTCTTCT+TGG | + | tig0012345:5314-5333 | Msa1351640:CDS | 35.0% | |
| ! | AAGTCAGGATAATGGCAAAA+AGG | - | tig0012345:5340-5359 | None:intergenic | 35.0% |
| GAAAAAGAACCCTTAATGGA+AGG | - | tig0012345:5460-5479 | None:intergenic | 35.0% | |
| CCAAGAAAAAGAACCCTTAA+TGG | - | tig0012345:5464-5483 | None:intergenic | 35.0% | |
| ! | CCATTAAGGGTTCTTTTTCT+TGG | + | tig0012345:5461-5480 | Msa1351640:CDS | 35.0% |
| GCTTCAAACATAAAATGCTC+AGG | - | tig0012345:5506-5525 | None:intergenic | 35.0% | |
| !!! | GTTTGAAGCCTTTGTTTTCT+TGG | + | tig0012345:5517-5536 | Msa1351640:CDS | 35.0% |
| TTGCACTTGTATGTTGTTCT+GGG | + | tig0012345:5546-5565 | Msa1351640:CDS | 35.0% | |
| CATTATCTTCCAAATGACTC+TGG | - | tig0012345:5700-5719 | None:intergenic | 35.0% | |
| ATAATGTTGAGGAAAATGCC+CGG | + | tig0012345:5714-5733 | Msa1351640:CDS | 35.0% | |
| ! | GTCAATTTCTTTTCGGACAA+TGG | + | tig0012345:5778-5797 | Msa1351640:CDS | 35.0% |
| ! | TTCTTTTCGGACAATGGAAA+AGG | + | tig0012345:5784-5803 | Msa1351640:CDS | 35.0% |
| ! | TCTTTTCGGACAATGGAAAA+GGG | + | tig0012345:5785-5804 | Msa1351640:CDS | 35.0% |
| TGAATGAATGTGTGATGAGT+GGG | - | tig0012345:3777-3796 | None:intergenic | 35.0% | |
| ATGAATGAATGTGTGATGAG+TGG | - | tig0012345:3778-3797 | None:intergenic | 35.0% | |
| TTGCTCCATTCTCTGAATTA+GGG | + | tig0012345:3860-3879 | Msa1351640:intron | 35.0% | |
| GAAAACCCTAATTCAGAGAA+TGG | - | tig0012345:3868-3887 | None:intergenic | 35.0% | |
| TAACACGTTTGATTAGGGTA+GGG | - | tig0012345:4053-4072 | None:intergenic | 35.0% | |
| ATAACACGTTTGATTAGGGT+AGG | - | tig0012345:4054-4073 | None:intergenic | 35.0% | |
| CGGTACTTATAGAATAGAAG+AGG | - | tig0012345:4089-4108 | None:intergenic | 35.0% | |
| TGATTCTGATTCTTAGTGGA+TGG | - | tig0012345:4316-4335 | None:intergenic | 35.0% | |
| !! | CTACTGATTCTGATTCTTAG+TGG | - | tig0012345:4320-4339 | None:intergenic | 35.0% |
| ! | ACGAAGTAAGCATGGATTAT+GGG | - | tig0012345:4414-4433 | None:intergenic | 35.0% |
| ATGTAATCATCTACCCTTGA+TGG | + | tig0012345:4582-4601 | Msa1351640:intron | 35.0% | |
| !!! | GTAGCCATTTTGATTCTTCT+TGG | + | tig0012345:4801-4820 | Msa1351640:CDS | 35.0% |
| CTGGAATTATGAGCAGAAAA+TGG | + | tig0012345:5117-5136 | Msa1351640:CDS | 35.0% | |
| !!! | CAGCTTTTTGTCATTTTGGT+TGG | + | tig0012345:5194-5213 | Msa1351640:CDS | 35.0% |
| ACCTCAGTTAGACAAGAATA+AGG | + | tig0012345:5217-5236 | Msa1351640:CDS | 35.0% | |
| CCTCAGTTAGACAAGAATAA+GGG | + | tig0012345:5218-5237 | Msa1351640:CDS | 35.0% | |
| GCTGTGCTTGTAAAATAATG+CGG | - | tig0012345:5257-5276 | None:intergenic | 35.0% | |
| ! | TATTTTACAAGCACAGCAAG+GGG | + | tig0012345:5260-5279 | Msa1351640:CDS | 35.0% |
| AAGTAAAGGGTAAGTACACA+GGG | - | tig0012345:5300-5319 | None:intergenic | 35.0% | |
| TAAGTAAAGGGTAAGTACAC+AGG | - | tig0012345:5301-5320 | None:intergenic | 35.0% | |
| GAAGAACGGTACTAAGTAAA+GGG | - | tig0012345:5313-5332 | None:intergenic | 35.0% | |
| AGAAGAACGGTACTAAGTAA+AGG | - | tig0012345:5314-5333 | None:intergenic | 35.0% | |
| TTACTTAGTACCGTTCTTCT+TGG | + | tig0012345:5314-5333 | Msa1351640:CDS | 35.0% | |
| ! | AAGTCAGGATAATGGCAAAA+AGG | - | tig0012345:5340-5359 | None:intergenic | 35.0% |
| GAAAAAGAACCCTTAATGGA+AGG | - | tig0012345:5460-5479 | None:intergenic | 35.0% | |
| CCAAGAAAAAGAACCCTTAA+TGG | - | tig0012345:5464-5483 | None:intergenic | 35.0% | |
| ! | CCATTAAGGGTTCTTTTTCT+TGG | + | tig0012345:5461-5480 | Msa1351640:CDS | 35.0% |
| GCTTCAAACATAAAATGCTC+AGG | - | tig0012345:5506-5525 | None:intergenic | 35.0% | |
| !!! | GTTTGAAGCCTTTGTTTTCT+TGG | + | tig0012345:5517-5536 | Msa1351640:CDS | 35.0% |
| TTGCACTTGTATGTTGTTCT+GGG | + | tig0012345:5546-5565 | Msa1351640:CDS | 35.0% | |
| CATTATCTTCCAAATGACTC+TGG | - | tig0012345:5700-5719 | None:intergenic | 35.0% | |
| ATAATGTTGAGGAAAATGCC+CGG | + | tig0012345:5714-5733 | Msa1351640:CDS | 35.0% | |
| ! | GTCAATTTCTTTTCGGACAA+TGG | + | tig0012345:5778-5797 | Msa1351640:CDS | 35.0% |
| ! | TTCTTTTCGGACAATGGAAA+AGG | + | tig0012345:5784-5803 | Msa1351640:CDS | 35.0% |
| ! | TCTTTTCGGACAATGGAAAA+GGG | + | tig0012345:5785-5804 | Msa1351640:CDS | 35.0% |
| GAGAGAGAAAGAGAAAGAAG+AGG | - | tig0012345:3831-3850 | None:intergenic | 40.0% | |
| GTTGCTCCATTCTCTGAATT+AGG | + | tig0012345:3859-3878 | Msa1351640:intron | 40.0% | |
| AAGGAAAAGAGAGCTTACAG+TGG | - | tig0012345:3949-3968 | None:intergenic | 40.0% | |
| AACACGTTTGATTAGGGTAG+GGG | - | tig0012345:4052-4071 | None:intergenic | 40.0% | |
| AGGGTTAAGAAGGGTTTGAT+GGG | - | tig0012345:4169-4188 | None:intergenic | 40.0% | |
| TAGGGTTAAGAAGGGTTTGA+TGG | - | tig0012345:4170-4189 | None:intergenic | 40.0% | |
| ! | GACGAAGTAAGCATGGATTA+TGG | - | tig0012345:4415-4434 | None:intergenic | 40.0% |
| TATCAAGCATCTAGCACTCT+TGG | - | tig0012345:4553-4572 | None:intergenic | 40.0% | |
| ! | AATCATCTACCCTTGATGGT+TGG | + | tig0012345:4586-4605 | Msa1351640:intron | 40.0% |
| TACGCATAACCAACCATCAA+GGG | - | tig0012345:4598-4617 | None:intergenic | 40.0% | |
| ATACGCATAACCAACCATCA+AGG | - | tig0012345:4599-4618 | None:intergenic | 40.0% | |
| ATGGATACCAGAAATCCTCT+GGG | - | tig0012345:4689-4708 | None:intergenic | 40.0% | |
| CATGCGTGGAATCTGTATTT+CGG | + | tig0012345:4721-4740 | Msa1351640:CDS | 40.0% | |
| ATGCGTGGAATCTGTATTTC+GGG | + | tig0012345:4722-4741 | Msa1351640:CDS | 40.0% | |
| CTTGATTATGGATTCGAGAG+CGG | - | tig0012345:4857-4876 | None:intergenic | 40.0% | |
| GGGGTCTAGGTGAAATTATT+AGG | + | tig0012345:4949-4968 | Msa1351640:CDS | 40.0% | |
| TGCCCTTCACTTAAAATGGA+AGG | + | tig0012345:4989-5008 | Msa1351640:CDS | 40.0% | |
| GAAATACAAGTGTGAGGAAG+AGG | - | tig0012345:5067-5086 | None:intergenic | 40.0% | |
| GCTGAAGAAGAAACATTGGA+AGG | - | tig0012345:5178-5197 | None:intergenic | 40.0% | |
| CCCTTATTCTTGTCTAACTG+AGG | - | tig0012345:5221-5240 | None:intergenic | 40.0% | |
| ! | ATTTTACAAGCACAGCAAGG+GGG | + | tig0012345:5261-5280 | Msa1351640:CDS | 40.0% |
| AAGGTAGGAAGTCAGGATAA+TGG | - | tig0012345:5348-5367 | None:intergenic | 40.0% | |
| !!! | TCCTGACTTCCTACCTTTTT+TGG | + | tig0012345:5351-5370 | Msa1351640:CDS | 40.0% |
| !!! | ACTTCCTACCTTTTTTGGCT+TGG | + | tig0012345:5356-5375 | Msa1351640:CDS | 40.0% |
| ACTACCAAGCCAAAAAAGGT+AGG | - | tig0012345:5363-5382 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTTGGCTTGGTAGT+CGG | + | tig0012345:5363-5382 | Msa1351640:CDS | 40.0% |
| CTTGCACTTGTATGTTGTTC+TGG | + | tig0012345:5545-5564 | Msa1351640:CDS | 40.0% | |
| CTAAACAATCTGCAACTGGA+CGG | - | tig0012345:5595-5614 | None:intergenic | 40.0% | |
| AGAGCTAAACAATCTGCAAC+TGG | - | tig0012345:5599-5618 | None:intergenic | 40.0% | |
| ! | AGTTGCAGATTGTTTAGCTC+TGG | + | tig0012345:5598-5617 | Msa1351640:CDS | 40.0% |
| !! | GTTGCAGATTGTTTAGCTCT+GGG | + | tig0012345:5599-5618 | Msa1351640:CDS | 40.0% |
| TCTGGGAAATCTACAAGACT+TGG | + | tig0012345:5616-5635 | Msa1351640:CDS | 40.0% | |
| ATCTACAAGACTTGGAAGCT+AGG | + | tig0012345:5624-5643 | Msa1351640:CDS | 40.0% | |
| ATGACTCTGGCTAGTGATAA+GGG | - | tig0012345:5687-5706 | None:intergenic | 40.0% | |
| AATGACTCTGGCTAGTGATA+AGG | - | tig0012345:5688-5707 | None:intergenic | 40.0% | |
| TATCACTAGCCAGAGTCATT+TGG | + | tig0012345:5688-5707 | Msa1351640:CDS | 40.0% | |
| GATTCATCTGAATACCTACC+AGG | - | tig0012345:5746-5765 | None:intergenic | 40.0% | |
| TCAGATGAATCAACAAAGCG+TGG | + | tig0012345:5755-5774 | Msa1351640:CDS | 40.0% | |
| CAGATGAATCAACAAAGCGT+GGG | + | tig0012345:5756-5775 | Msa1351640:CDS | 40.0% | |
| ! | AGCGTGGGTCAATTTCTTTT+CGG | + | tig0012345:5771-5790 | Msa1351640:CDS | 40.0% |
| ATGGCACAATAACTTGGGTT+GGG | - | tig0012345:5913-5932 | None:intergenic | 40.0% | |
| TATGGCACAATAACTTGGGT+TGG | - | tig0012345:5914-5933 | None:intergenic | 40.0% | |
| GAGAGAGAAAGAGAAAGAAG+AGG | - | tig0012345:3831-3850 | None:intergenic | 40.0% | |
| GTTGCTCCATTCTCTGAATT+AGG | + | tig0012345:3859-3878 | Msa1351640:intron | 40.0% | |
| AAGGAAAAGAGAGCTTACAG+TGG | - | tig0012345:3949-3968 | None:intergenic | 40.0% | |
| AACACGTTTGATTAGGGTAG+GGG | - | tig0012345:4052-4071 | None:intergenic | 40.0% | |
| AGGGTTAAGAAGGGTTTGAT+GGG | - | tig0012345:4169-4188 | None:intergenic | 40.0% | |
| TAGGGTTAAGAAGGGTTTGA+TGG | - | tig0012345:4170-4189 | None:intergenic | 40.0% | |
| ! | GACGAAGTAAGCATGGATTA+TGG | - | tig0012345:4415-4434 | None:intergenic | 40.0% |
| TATCAAGCATCTAGCACTCT+TGG | - | tig0012345:4553-4572 | None:intergenic | 40.0% | |
| ! | AATCATCTACCCTTGATGGT+TGG | + | tig0012345:4586-4605 | Msa1351640:intron | 40.0% |
| TACGCATAACCAACCATCAA+GGG | - | tig0012345:4598-4617 | None:intergenic | 40.0% | |
| ATACGCATAACCAACCATCA+AGG | - | tig0012345:4599-4618 | None:intergenic | 40.0% | |
| ATGGATACCAGAAATCCTCT+GGG | - | tig0012345:4689-4708 | None:intergenic | 40.0% | |
| CATGCGTGGAATCTGTATTT+CGG | + | tig0012345:4721-4740 | Msa1351640:CDS | 40.0% | |
| ATGCGTGGAATCTGTATTTC+GGG | + | tig0012345:4722-4741 | Msa1351640:CDS | 40.0% | |
| CTTGATTATGGATTCGAGAG+CGG | - | tig0012345:4857-4876 | None:intergenic | 40.0% | |
| GGGGTCTAGGTGAAATTATT+AGG | + | tig0012345:4949-4968 | Msa1351640:CDS | 40.0% | |
| TGCCCTTCACTTAAAATGGA+AGG | + | tig0012345:4989-5008 | Msa1351640:CDS | 40.0% | |
| GAAATACAAGTGTGAGGAAG+AGG | - | tig0012345:5067-5086 | None:intergenic | 40.0% | |
| GCTGAAGAAGAAACATTGGA+AGG | - | tig0012345:5178-5197 | None:intergenic | 40.0% | |
| CCCTTATTCTTGTCTAACTG+AGG | - | tig0012345:5221-5240 | None:intergenic | 40.0% | |
| ! | ATTTTACAAGCACAGCAAGG+GGG | + | tig0012345:5261-5280 | Msa1351640:CDS | 40.0% |
| AAGGTAGGAAGTCAGGATAA+TGG | - | tig0012345:5348-5367 | None:intergenic | 40.0% | |
| !!! | TCCTGACTTCCTACCTTTTT+TGG | + | tig0012345:5351-5370 | Msa1351640:CDS | 40.0% |
| !!! | ACTTCCTACCTTTTTTGGCT+TGG | + | tig0012345:5356-5375 | Msa1351640:CDS | 40.0% |
| ACTACCAAGCCAAAAAAGGT+AGG | - | tig0012345:5363-5382 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTTGGCTTGGTAGT+CGG | + | tig0012345:5363-5382 | Msa1351640:CDS | 40.0% |
| CTTGCACTTGTATGTTGTTC+TGG | + | tig0012345:5545-5564 | Msa1351640:CDS | 40.0% | |
| CTAAACAATCTGCAACTGGA+CGG | - | tig0012345:5595-5614 | None:intergenic | 40.0% | |
| AGAGCTAAACAATCTGCAAC+TGG | - | tig0012345:5599-5618 | None:intergenic | 40.0% | |
| ! | AGTTGCAGATTGTTTAGCTC+TGG | + | tig0012345:5598-5617 | Msa1351640:CDS | 40.0% |
| !! | GTTGCAGATTGTTTAGCTCT+GGG | + | tig0012345:5599-5618 | Msa1351640:CDS | 40.0% |
| TCTGGGAAATCTACAAGACT+TGG | + | tig0012345:5616-5635 | Msa1351640:CDS | 40.0% | |
| ATCTACAAGACTTGGAAGCT+AGG | + | tig0012345:5624-5643 | Msa1351640:CDS | 40.0% | |
| ATGACTCTGGCTAGTGATAA+GGG | - | tig0012345:5687-5706 | None:intergenic | 40.0% | |
| AATGACTCTGGCTAGTGATA+AGG | - | tig0012345:5688-5707 | None:intergenic | 40.0% | |
| TATCACTAGCCAGAGTCATT+TGG | + | tig0012345:5688-5707 | Msa1351640:CDS | 40.0% | |
| GATTCATCTGAATACCTACC+AGG | - | tig0012345:5746-5765 | None:intergenic | 40.0% | |
| TCAGATGAATCAACAAAGCG+TGG | + | tig0012345:5755-5774 | Msa1351640:CDS | 40.0% | |
| CAGATGAATCAACAAAGCGT+GGG | + | tig0012345:5756-5775 | Msa1351640:CDS | 40.0% | |
| ! | AGCGTGGGTCAATTTCTTTT+CGG | + | tig0012345:5771-5790 | Msa1351640:CDS | 40.0% |
| ATGGCACAATAACTTGGGTT+GGG | - | tig0012345:5913-5932 | None:intergenic | 40.0% | |
| TATGGCACAATAACTTGGGT+TGG | - | tig0012345:5914-5933 | None:intergenic | 40.0% | |
| TGTGATGAGTGGGACTTTGT+TGG | - | tig0012345:3767-3786 | None:intergenic | 45.0% | |
| CTACACAGACGAAGTAAGCA+TGG | - | tig0012345:4422-4441 | None:intergenic | 45.0% | |
| TGGATACCAGAAATCCTCTG+GGG | - | tig0012345:4688-4707 | None:intergenic | 45.0% | |
| CATGGATACCAGAAATCCTC+TGG | - | tig0012345:4690-4709 | None:intergenic | 45.0% | |
| !! | AGATTTGCTGCCGAAGCATT+CGG | + | tig0012345:4759-4778 | Msa1351640:CDS | 45.0% |
| CGCTCTCGAATCCATAATCA+AGG | + | tig0012345:4855-4874 | Msa1351640:CDS | 45.0% | |
| TTTGTAATCTGGTGGGGTCT+AGG | + | tig0012345:4936-4955 | Msa1351640:CDS | 45.0% | |
| GACGTGCCCTTCACTTAAAA+TGG | + | tig0012345:4985-5004 | Msa1351640:CDS | 45.0% | |
| AGGTTCTGCAAATCCCATGT+TGG | - | tig0012345:5042-5061 | None:intergenic | 45.0% | |
| GGAGGAGAAATACAAGTGTG+AGG | - | tig0012345:5073-5092 | None:intergenic | 45.0% | |
| GGCAAAAAGGCCAAGAAGAA+CGG | - | tig0012345:5327-5346 | None:intergenic | 45.0% | |
| GCCAAAAAAGGTAGGAAGTC+AGG | - | tig0012345:5355-5374 | None:intergenic | 45.0% | |
| TCCGACTACCAAGCCAAAAA+AGG | - | tig0012345:5367-5386 | None:intergenic | 45.0% | |
| AAGACTTGGAAGCTAGGACT+AGG | + | tig0012345:5630-5649 | Msa1351640:CDS | 45.0% | |
| AATACCTACCAGGACTAAGC+CGG | - | tig0012345:5736-5755 | None:intergenic | 45.0% | |
| !! | GAAAAGGGTGTTGCTTCAAC+TGG | + | tig0012345:5800-5819 | Msa1351640:CDS | 45.0% |
| ! | TGGCACAATAACTTGGGTTG+GGG | - | tig0012345:5912-5931 | None:intergenic | 45.0% |
| TGTGATGAGTGGGACTTTGT+TGG | - | tig0012345:3767-3786 | None:intergenic | 45.0% | |
| CTACACAGACGAAGTAAGCA+TGG | - | tig0012345:4422-4441 | None:intergenic | 45.0% | |
| TGGATACCAGAAATCCTCTG+GGG | - | tig0012345:4688-4707 | None:intergenic | 45.0% | |
| CATGGATACCAGAAATCCTC+TGG | - | tig0012345:4690-4709 | None:intergenic | 45.0% | |
| !! | AGATTTGCTGCCGAAGCATT+CGG | + | tig0012345:4759-4778 | Msa1351640:CDS | 45.0% |
| CGCTCTCGAATCCATAATCA+AGG | + | tig0012345:4855-4874 | Msa1351640:CDS | 45.0% | |
| TTTGTAATCTGGTGGGGTCT+AGG | + | tig0012345:4936-4955 | Msa1351640:CDS | 45.0% | |
| GACGTGCCCTTCACTTAAAA+TGG | + | tig0012345:4985-5004 | Msa1351640:CDS | 45.0% | |
| AGGTTCTGCAAATCCCATGT+TGG | - | tig0012345:5042-5061 | None:intergenic | 45.0% | |
| GGAGGAGAAATACAAGTGTG+AGG | - | tig0012345:5073-5092 | None:intergenic | 45.0% | |
| GGCAAAAAGGCCAAGAAGAA+CGG | - | tig0012345:5327-5346 | None:intergenic | 45.0% | |
| GCCAAAAAAGGTAGGAAGTC+AGG | - | tig0012345:5355-5374 | None:intergenic | 45.0% | |
| TCCGACTACCAAGCCAAAAA+AGG | - | tig0012345:5367-5386 | None:intergenic | 45.0% | |
| AAGACTTGGAAGCTAGGACT+AGG | + | tig0012345:5630-5649 | Msa1351640:CDS | 45.0% | |
| AATACCTACCAGGACTAAGC+CGG | - | tig0012345:5736-5755 | None:intergenic | 45.0% | |
| !! | GAAAAGGGTGTTGCTTCAAC+TGG | + | tig0012345:5800-5819 | Msa1351640:CDS | 45.0% |
| ! | TGGCACAATAACTTGGGTTG+GGG | - | tig0012345:5912-5931 | None:intergenic | 45.0% |
| !! | CAATAATTATTAATTAATAA+AGG | - | tig0012345:3968-3987 | None:intergenic | 5.0% |
| !! | CAATAATTATTAATTAATAA+AGG | - | tig0012345:3968-3987 | None:intergenic | 5.0% |
| GTCCACAAACCCACTTGCTT+CGG | - | tig0012345:3702-3721 | None:intergenic | 50.0% | |
| ! | AAGTGGGTTTGTGGACGAAG+CGG | + | tig0012345:3706-3725 | Msa1351640:CDS | 50.0% |
| ! | AAAAAAGGCACAAGCCCCAG+AGG | + | tig0012345:4671-4690 | Msa1351640:intron | 50.0% |
| TTCGGCAGCAAATCTGGACA+GGG | - | tig0012345:4754-4773 | None:intergenic | 50.0% | |
| GAATGCTTCGGCAGCAAATC+TGG | - | tig0012345:4760-4779 | None:intergenic | 50.0% | |
| TGTCACCACACCGAATGCTT+CGG | - | tig0012345:4772-4791 | None:intergenic | 50.0% | |
| ACAAGTGTGAGGAAGAGGCA+AGG | - | tig0012345:5062-5081 | None:intergenic | 50.0% | |
| ACTTGGAAGCTAGGACTAGG+AGG | + | tig0012345:5633-5652 | Msa1351640:CDS | 50.0% | |
| ATACCTACCAGGACTAAGCC+GGG | - | tig0012345:5735-5754 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTGGGGATTGCAT+GGG | - | tig0012345:5902-5921 | None:intergenic | 50.0% |
| !! | AACTTGGGTTGGGGATTGCA+TGG | - | tig0012345:5903-5922 | None:intergenic | 50.0% |
| GTCCACAAACCCACTTGCTT+CGG | - | tig0012345:3702-3721 | None:intergenic | 50.0% | |
| ! | AAGTGGGTTTGTGGACGAAG+CGG | + | tig0012345:3706-3725 | Msa1351640:CDS | 50.0% |
| ! | AAAAAAGGCACAAGCCCCAG+AGG | + | tig0012345:4671-4690 | Msa1351640:intron | 50.0% |
| TTCGGCAGCAAATCTGGACA+GGG | - | tig0012345:4754-4773 | None:intergenic | 50.0% | |
| GAATGCTTCGGCAGCAAATC+TGG | - | tig0012345:4760-4779 | None:intergenic | 50.0% | |
| TGTCACCACACCGAATGCTT+CGG | - | tig0012345:4772-4791 | None:intergenic | 50.0% | |
| ACAAGTGTGAGGAAGAGGCA+AGG | - | tig0012345:5062-5081 | None:intergenic | 50.0% | |
| ACTTGGAAGCTAGGACTAGG+AGG | + | tig0012345:5633-5652 | Msa1351640:CDS | 50.0% | |
| ATACCTACCAGGACTAAGCC+GGG | - | tig0012345:5735-5754 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTGGGGATTGCAT+GGG | - | tig0012345:5902-5921 | None:intergenic | 50.0% |
| !! | AACTTGGGTTGGGGATTGCA+TGG | - | tig0012345:5903-5922 | None:intergenic | 50.0% |
| ! | GACCGAAGCAAGTGGGTTTG+TGG | + | tig0012345:3697-3716 | Msa1351640:CDS | 55.0% |
| TGTGGACGAAGCGGAAGGTT+CGG | + | tig0012345:3715-3734 | Msa1351640:CDS | 55.0% | |
| GAAGGTTCGGAGGATACAGC+TGG | + | tig0012345:3728-3747 | Msa1351640:CDS | 55.0% | |
| ! | CTGCTGCTGCTGTTGCTTGA+TGG | + | tig0012345:3910-3929 | Msa1351640:intron | 55.0% |
| CACAAGCCCCAGAGGATTTC+TGG | + | tig0012345:4679-4698 | Msa1351640:CDS | 55.0% | |
| ACGCATGCTCTCTGACAGCA+TGG | - | tig0012345:4708-4727 | None:intergenic | 55.0% | |
| ! | ATGCTGTCAGAGAGCATGCG+TGG | + | tig0012345:4707-4726 | Msa1351640:CDS | 55.0% |
| TCGGCAGCAAATCTGGACAG+GGG | - | tig0012345:4753-4772 | None:intergenic | 55.0% | |
| CTTCGGCAGCAAATCTGGAC+AGG | - | tig0012345:4755-4774 | None:intergenic | 55.0% | |
| CCAGTCTCCAACCTCTGCAA+GGG | - | tig0012345:5101-5120 | None:intergenic | 55.0% | |
| TCCAGTCTCCAACCTCTGCA+AGG | - | tig0012345:5102-5121 | None:intergenic | 55.0% | |
| GAAAATGCCCGGCTTAGTCC+TGG | + | tig0012345:5725-5744 | Msa1351640:CDS | 55.0% | |
| CACTACGGCTGGGAGAGAAA+AGG | - | tig0012345:5844-5863 | None:intergenic | 55.0% | |
| !! | ATCCGGGTGGTGTTGCACTA+CGG | - | tig0012345:5859-5878 | None:intergenic | 55.0% |
| ACCTGGAAGTGACGGTGATC+CGG | - | tig0012345:5876-5895 | None:intergenic | 55.0% | |
| GATCACCGTCACTTCCAGGT+TGG | + | tig0012345:5876-5895 | Msa1351640:CDS | 55.0% | |
| ATGGGCCAACCTGGAAGTGA+CGG | - | tig0012345:5884-5903 | None:intergenic | 55.0% | |
| ! | GACCGAAGCAAGTGGGTTTG+TGG | + | tig0012345:3697-3716 | Msa1351640:CDS | 55.0% |
| TGTGGACGAAGCGGAAGGTT+CGG | + | tig0012345:3715-3734 | Msa1351640:CDS | 55.0% | |
| GAAGGTTCGGAGGATACAGC+TGG | + | tig0012345:3728-3747 | Msa1351640:CDS | 55.0% | |
| ! | CTGCTGCTGCTGTTGCTTGA+TGG | + | tig0012345:3910-3929 | Msa1351640:intron | 55.0% |
| CACAAGCCCCAGAGGATTTC+TGG | + | tig0012345:4679-4698 | Msa1351640:CDS | 55.0% | |
| ACGCATGCTCTCTGACAGCA+TGG | - | tig0012345:4708-4727 | None:intergenic | 55.0% | |
| ! | ATGCTGTCAGAGAGCATGCG+TGG | + | tig0012345:4707-4726 | Msa1351640:CDS | 55.0% |
| TCGGCAGCAAATCTGGACAG+GGG | - | tig0012345:4753-4772 | None:intergenic | 55.0% | |
| CTTCGGCAGCAAATCTGGAC+AGG | - | tig0012345:4755-4774 | None:intergenic | 55.0% | |
| CCAGTCTCCAACCTCTGCAA+GGG | - | tig0012345:5101-5120 | None:intergenic | 55.0% | |
| TCCAGTCTCCAACCTCTGCA+AGG | - | tig0012345:5102-5121 | None:intergenic | 55.0% | |
| GAAAATGCCCGGCTTAGTCC+TGG | + | tig0012345:5725-5744 | Msa1351640:CDS | 55.0% | |
| CACTACGGCTGGGAGAGAAA+AGG | - | tig0012345:5844-5863 | None:intergenic | 55.0% | |
| !! | ATCCGGGTGGTGTTGCACTA+CGG | - | tig0012345:5859-5878 | None:intergenic | 55.0% |
| ACCTGGAAGTGACGGTGATC+CGG | - | tig0012345:5876-5895 | None:intergenic | 55.0% | |
| GATCACCGTCACTTCCAGGT+TGG | + | tig0012345:5876-5895 | Msa1351640:CDS | 55.0% | |
| ATGGGCCAACCTGGAAGTGA+CGG | - | tig0012345:5884-5903 | None:intergenic | 55.0% | |
| GGGTTTGTGGACGAAGCGGA+AGG | + | tig0012345:3710-3729 | Msa1351640:CDS | 60.0% | |
| CGGAGGATACAGCTGGAGAC+AGG | + | tig0012345:3735-3754 | Msa1351640:CDS | 60.0% | |
| CAGCAGTAGCGCGAGGAGAA+AGG | - | tig0012345:3896-3915 | None:intergenic | 60.0% | |
| ! | TGCTGCCGAAGCATTCGGTG+TGG | + | tig0012345:4764-4783 | Msa1351640:CDS | 60.0% |
| ! | CCAACCTCTGCAAGGGTGCA+CGG | - | tig0012345:5094-5113 | None:intergenic | 60.0% |
| CCCTTGCAGAGGTTGGAGAC+TGG | + | tig0012345:5098-5117 | Msa1351640:CDS | 60.0% | |
| ATGCCCGGCTTAGTCCTGGT+AGG | + | tig0012345:5729-5748 | Msa1351640:CDS | 60.0% | |
| !! | GGTGGTGTTGCACTACGGCT+GGG | - | tig0012345:5854-5873 | None:intergenic | 60.0% |
| AGCCGTAGTGCAACACCACC+CGG | + | tig0012345:5854-5873 | Msa1351640:CDS | 60.0% | |
| CCTGGAAGTGACGGTGATCC+GGG | - | tig0012345:5875-5894 | None:intergenic | 60.0% | |
| GGGTTTGTGGACGAAGCGGA+AGG | + | tig0012345:3710-3729 | Msa1351640:CDS | 60.0% | |
| CGGAGGATACAGCTGGAGAC+AGG | + | tig0012345:3735-3754 | Msa1351640:CDS | 60.0% | |
| CAGCAGTAGCGCGAGGAGAA+AGG | - | tig0012345:3896-3915 | None:intergenic | 60.0% | |
| ! | TGCTGCCGAAGCATTCGGTG+TGG | + | tig0012345:4764-4783 | Msa1351640:CDS | 60.0% |
| ! | CCAACCTCTGCAAGGGTGCA+CGG | - | tig0012345:5094-5113 | None:intergenic | 60.0% |
| CCCTTGCAGAGGTTGGAGAC+TGG | + | tig0012345:5098-5117 | Msa1351640:CDS | 60.0% | |
| ATGCCCGGCTTAGTCCTGGT+AGG | + | tig0012345:5729-5748 | Msa1351640:CDS | 60.0% | |
| !! | GGTGGTGTTGCACTACGGCT+GGG | - | tig0012345:5854-5873 | None:intergenic | 60.0% |
| AGCCGTAGTGCAACACCACC+CGG | + | tig0012345:5854-5873 | Msa1351640:CDS | 60.0% | |
| CCTGGAAGTGACGGTGATCC+GGG | - | tig0012345:5875-5894 | None:intergenic | 60.0% | |
| GGACGAAGCGGAAGGTTCGG+AGG | + | tig0012345:3718-3737 | Msa1351640:CDS | 65.0% | |
| ACAGCAGCAGCAGTAGCGCG+AGG | - | tig0012345:3903-3922 | None:intergenic | 65.0% | |
| TCCTCCGTGCACCCTTGCAG+AGG | + | tig0012345:5087-5106 | Msa1351640:CDS | 65.0% | |
| ! | ACCTCTGCAAGGGTGCACGG+AGG | - | tig0012345:5091-5110 | None:intergenic | 65.0% |
| CCGTGCACCCTTGCAGAGGT+TGG | + | tig0012345:5091-5110 | Msa1351640:CDS | 65.0% | |
| !! | GGGTGGTGTTGCACTACGGC+TGG | - | tig0012345:5855-5874 | None:intergenic | 65.0% |
| GGAAGTGACGGTGATCCGGG+TGG | - | tig0012345:5872-5891 | None:intergenic | 65.0% | |
| CCCGGATCACCGTCACTTCC+AGG | + | tig0012345:5872-5891 | Msa1351640:CDS | 65.0% | |
| GGGGATTGCATGGGCCAACC+TGG | - | tig0012345:5893-5912 | None:intergenic | 65.0% | |
| GGACGAAGCGGAAGGTTCGG+AGG | + | tig0012345:3718-3737 | Msa1351640:CDS | 65.0% | |
| ACAGCAGCAGCAGTAGCGCG+AGG | - | tig0012345:3903-3922 | None:intergenic | 65.0% | |
| TCCTCCGTGCACCCTTGCAG+AGG | + | tig0012345:5087-5106 | Msa1351640:CDS | 65.0% | |
| ! | ACCTCTGCAAGGGTGCACGG+AGG | - | tig0012345:5091-5110 | None:intergenic | 65.0% |
| CCGTGCACCCTTGCAGAGGT+TGG | + | tig0012345:5091-5110 | Msa1351640:CDS | 65.0% | |
| !! | GGGTGGTGTTGCACTACGGC+TGG | - | tig0012345:5855-5874 | None:intergenic | 65.0% |
| GGAAGTGACGGTGATCCGGG+TGG | - | tig0012345:5872-5891 | None:intergenic | 65.0% | |
| CCCGGATCACCGTCACTTCC+AGG | + | tig0012345:5872-5891 | Msa1351640:CDS | 65.0% | |
| GGGGATTGCATGGGCCAACC+TGG | - | tig0012345:5893-5912 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012345 | gene | 3695 | 5934 | 3695 | ID=Msa1351640;Name=Msa1351640 |
| tig0012345 | mRNA | 3695 | 5934 | 3695 | ID=Msa1351640-mRNA-1;Parent=Msa1351640;Name=Msa1351640-mRNA-1;_AED=0.17;_eAED=0.22;_QI=0|0|0|1|0|0|3|0|456 |
| tig0012345 | exon | 3695 | 3771 | 3695 | ID=Msa1351640-mRNA-1:exon:7815;Parent=Msa1351640-mRNA-1 |
| tig0012345 | exon | 4501 | 4537 | 4501 | ID=Msa1351640-mRNA-1:exon:7816;Parent=Msa1351640-mRNA-1 |
| tig0012345 | exon | 4678 | 5934 | 4678 | ID=Msa1351640-mRNA-1:exon:7817;Parent=Msa1351640-mRNA-1 |
| tig0012345 | CDS | 3695 | 3771 | 3695 | ID=Msa1351640-mRNA-1:cds;Parent=Msa1351640-mRNA-1 |
| tig0012345 | CDS | 4501 | 4537 | 4501 | ID=Msa1351640-mRNA-1:cds;Parent=Msa1351640-mRNA-1 |
| tig0012345 | CDS | 4678 | 5934 | 4678 | ID=Msa1351640-mRNA-1:cds;Parent=Msa1351640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
