Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009440 | XP_013447667.1 | 98.430 | 446 | 6 | 1 | 1 | 445 | 1 | 446 | 0.0 | 911 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009440 | sp|Q94KT8|COBRA_ARATH | 76.212 | 433 | 97 | 2 | 4 | 430 | 10 | 442 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009440 | A0A072TXZ2 | 98.430 | 446 | 6 | 1 | 1 | 445 | 1 | 446 | 0.0 | 911 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138390 | Msa1009440 | 0.812534 | 4.040355e-51 | -8.615850e-47 |
| Msa1009440 | Msa1050780 | 0.844050 | 9.608360e-59 | -8.615850e-47 |
| Msa1009440 | Msa1098180 | 0.873819 | 1.094209e-67 | -8.615850e-47 |
| Msa1009440 | Msa1119300 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa1009440 | Msa1351640 | 0.810405 | 1.171492e-50 | -8.615850e-47 |
| Msa1009440 | Msa1375060 | 0.817317 | 3.510998e-52 | -8.615850e-47 |
| Msa1009440 | Msa1392330 | 0.815720 | 7.999875e-52 | -8.615850e-47 |
| Msa1009440 | Msa1460820 | 0.816114 | 6.533141e-52 | -8.615850e-47 |
| Msa0240450 | Msa1009440 | 0.811223 | 7.796961e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009440 | MtrunA17_Chr7g0219921 | 98.430 | 446 | 6 | 1 | 1 | 445 | 1 | 446 | 0.0 | 911 |
| Msa1009440 | MtrunA17_Chr6g0455401 | 82.287 | 446 | 75 | 3 | 1 | 444 | 2 | 445 | 0.0 | 771 |
| Msa1009440 | MtrunA17_Chr2g0308381 | 80.778 | 437 | 79 | 2 | 7 | 439 | 11 | 446 | 0.0 | 749 |
| Msa1009440 | MtrunA17_Chr6g0455391 | 79.198 | 399 | 75 | 3 | 21 | 419 | 23 | 413 | 0.0 | 667 |
| Msa1009440 | MtrunA17_Chr2g0333731 | 65.802 | 424 | 144 | 1 | 23 | 445 | 25 | 448 | 0.0 | 624 |
| Msa1009440 | MtrunA17_Chr6g0455411 | 67.548 | 416 | 131 | 1 | 15 | 430 | 8 | 419 | 0.0 | 624 |
| Msa1009440 | MtrunA17_Chr7g0219931 | 68.182 | 418 | 129 | 1 | 18 | 435 | 11 | 424 | 0.0 | 622 |
| Msa1009440 | MtrunA17_Chr2g0308371 | 60.140 | 429 | 161 | 3 | 18 | 441 | 16 | 439 | 0.0 | 572 |
| Msa1009440 | MtrunA17_Chr3g0145441 | 45.221 | 429 | 222 | 8 | 14 | 433 | 30 | 454 | 1.02e-135 | 398 |
| Msa1009440 | MtrunA17_Chr4g0068011 | 26.419 | 458 | 278 | 19 | 17 | 428 | 189 | 633 | 7.24e-41 | 154 |
| Msa1009440 | MtrunA17_Chr2g0294901 | 27.233 | 459 | 274 | 18 | 33 | 444 | 208 | 653 | 4.73e-40 | 152 |
| Msa1009440 | MtrunA17_Chr5g0394101 | 27.316 | 421 | 249 | 17 | 34 | 409 | 26 | 434 | 6.36e-38 | 143 |
| Msa1009440 | MtrunA17_Chr2g0319581 | 26.269 | 453 | 272 | 18 | 34 | 441 | 226 | 661 | 6.83e-37 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009440 | AT5G60920.1 | 76.212 | 433 | 97 | 2 | 4 | 430 | 10 | 442 | 0.0 | 716 |
| Msa1009440 | AT3G02210.1 | 73.614 | 451 | 110 | 4 | 1 | 443 | 1 | 450 | 0.0 | 698 |
| Msa1009440 | AT3G29810.1 | 73.455 | 437 | 102 | 4 | 15 | 441 | 8 | 440 | 0.0 | 683 |
| Msa1009440 | AT5G60920.2 | 78.481 | 395 | 83 | 1 | 38 | 430 | 1 | 395 | 0.0 | 681 |
| Msa1009440 | AT5G15630.1 | 69.157 | 415 | 122 | 2 | 26 | 438 | 20 | 430 | 0.0 | 627 |
| Msa1009440 | AT5G15630.3 | 68.090 | 398 | 121 | 2 | 43 | 438 | 1 | 394 | 0.0 | 591 |
| Msa1009440 | AT5G15630.4 | 67.792 | 385 | 118 | 2 | 56 | 438 | 1 | 381 | 0.0 | 570 |
| Msa1009440 | AT5G15630.2 | 67.792 | 385 | 118 | 2 | 56 | 438 | 1 | 381 | 0.0 | 570 |
| Msa1009440 | AT5G15630.5 | 72.000 | 325 | 87 | 1 | 26 | 350 | 20 | 340 | 0.0 | 509 |
| Msa1009440 | AT1G09790.1 | 53.317 | 407 | 180 | 4 | 15 | 418 | 24 | 423 | 1.03e-153 | 444 |
| Msa1009440 | AT1G09790.2 | 53.865 | 401 | 175 | 4 | 21 | 418 | 19 | 412 | 2.92e-152 | 439 |
| Msa1009440 | AT5G60950.1 | 54.680 | 203 | 83 | 3 | 13 | 214 | 8 | 202 | 3.42e-75 | 234 |
| Msa1009440 | AT4G16120.1 | 27.725 | 422 | 253 | 16 | 33 | 409 | 216 | 630 | 3.43e-42 | 158 |
| Msa1009440 | AT5G49270.1 | 24.524 | 473 | 304 | 17 | 17 | 445 | 200 | 663 | 1.66e-39 | 150 |
| Msa1009440 | AT3G20580.1 | 27.313 | 454 | 271 | 21 | 34 | 441 | 229 | 669 | 2.73e-35 | 139 |
| Msa1009440 | AT4G27110.1 | 27.412 | 456 | 272 | 21 | 33 | 443 | 218 | 659 | 6.57e-35 | 137 |
| Msa1009440 | AT3G16860.1 | 25.821 | 457 | 276 | 19 | 33 | 441 | 209 | 650 | 1.31e-34 | 137 |
Find 152 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTCTATGCATATGTTTA+AGG | 0.153472 | 7_1:+10884132 | Msa1009440:CDS |
| CATTTGGCATCAGTTGTTTC+TGG | 0.237555 | 7_1:+10883072 | Msa1009440:CDS |
| GGTGATTGTTCAAAATTTAA+AGG | 0.254979 | 7_1:+10882061 | Msa1009440:CDS |
| GATGCCAAATGTGGCGTATT+TGG | 0.260685 | 7_1:-10883060 | None:intergenic |
| TCATATTTGTGATGTCAATT+TGG | 0.299272 | 7_1:+10884218 | Msa1009440:three_prime_UTR |
| TTGCTGATTGTAAGGCGTTC+CGG | 0.306156 | 7_1:-10882134 | None:intergenic |
| TTGATTGTGATATTCCCATT+TGG | 0.317355 | 7_1:-10881477 | None:intergenic |
| CACAAATATGACGCCAAAAC+TGG | 0.318545 | 7_1:-10884206 | None:intergenic |
| CTACTTTCTTTCACTTCAAC+AGG | 0.326474 | 7_1:+10880548 | Msa1009440:CDS |
| CAGTCCAAATACGCCACATT+TGG | 0.332811 | 7_1:+10883056 | Msa1009440:intron |
| ACCGTTGTAGATTTACTTCC+CGG | 0.336251 | 7_1:+10882115 | Msa1009440:CDS |
| CCTTAACATGCCAGTGGATT+CGG | 0.336295 | 7_1:-10883152 | None:intergenic |
| AAAGAATAATTTATCACCTT+TGG | 0.340712 | 7_1:+10883101 | Msa1009440:CDS |
| GCATCAGTTGTTTCTGGTAA+TGG | 0.350046 | 7_1:+10883078 | Msa1009440:CDS |
| AGATGATACAGCAATGCTTT+GGG | 0.350718 | 7_1:+10883861 | Msa1009440:intron |
| TGATTGTGATATTCCCATTT+GGG | 0.364692 | 7_1:-10881476 | None:intergenic |
| TGGAAGTGAAGAGAAGACTA+TGG | 0.366936 | 7_1:-10880413 | None:intergenic |
| TGAGTCAGATTGTCAAAGTT+TGG | 0.368665 | 7_1:-10883267 | None:intergenic |
| CAGATGATACAGCAATGCTT+TGG | 0.369010 | 7_1:+10883860 | Msa1009440:intron |
| TGCTGATTGTAAGGCGTTCC+GGG | 0.370044 | 7_1:-10882133 | None:intergenic |
| TAAAGTTACAACTTACAATA+AGG | 0.381272 | 7_1:-10884397 | None:intergenic |
| TGGAAATATAATTAAAGAAC+AGG | 0.387465 | 7_1:-10880368 | None:intergenic |
| ATGGGAATATCACAATCAAA+TGG | 0.394559 | 7_1:+10881481 | Msa1009440:CDS |
| TTTGCAATTTGCTGATTGTA+AGG | 0.399809 | 7_1:-10882142 | None:intergenic |
| TGCTTTAGTAATGGCCTCCT+TGG | 0.418302 | 7_1:+10884101 | Msa1009440:CDS |
| TGAAAGTTGATTTATCCTTT+CGG | 0.420310 | 7_1:-10883954 | None:intergenic |
| GACTATGGGAAGAGAGAGAG+TGG | 0.420785 | 7_1:-10880398 | None:intergenic |
| TTACATAGGATTCAGCATAT+TGG | 0.421072 | 7_1:+10884315 | Msa1009440:three_prime_UTR |
| AAGATCCTACCATGGCAGTT+GGG | 0.422373 | 7_1:+10882200 | Msa1009440:CDS |
| CCGAATCCACTGGCATGTTA+AGG | 0.429523 | 7_1:+10883152 | Msa1009440:CDS |
| GCCACATGCACATGTTGGGC+AGG | 0.434884 | 7_1:-10882915 | None:intergenic |
| CAGGACCTGGTTATACTTGT+GGG | 0.437947 | 7_1:+10882302 | Msa1009440:CDS |
| TATCCATGGTTGCCTAATGC+TGG | 0.440706 | 7_1:+10884054 | Msa1009440:CDS |
| TTCATTGTTTGCTTTAGTAA+TGG | 0.442319 | 7_1:+10884092 | Msa1009440:CDS |
| TGAATCCTATGTAACAATCC+TGG | 0.443066 | 7_1:-10884306 | None:intergenic |
| TATGATCCACTTGACCCAAA+TGG | 0.443160 | 7_1:+10881462 | Msa1009440:CDS |
| AAGTCCGCACAAGATTCATC+AGG | 0.443238 | 7_1:-10884472 | None:intergenic |
| ACCGTATGAATTATTCCGAT+TGG | 0.456765 | 7_1:+10883226 | Msa1009440:CDS |
| ACCTTGAGTGCCCCAGGACC+TGG | 0.457389 | 7_1:+10882289 | Msa1009440:CDS |
| ATGATCCACTTGACCCAAAT+GGG | 0.458607 | 7_1:+10881463 | Msa1009440:CDS |
| GGCAGCCACATGCACATGTT+GGG | 0.458842 | 7_1:-10882919 | None:intergenic |
| GAATTATTCCGATTGGAACT+TGG | 0.459690 | 7_1:+10883233 | Msa1009440:CDS |
| GCTTCCCCTGGCTGGTCACT+AGG | 0.460746 | 7_1:+10881977 | Msa1009440:CDS |
| GCATCCCAGGATTGTTACAT+AGG | 0.462791 | 7_1:+10884301 | Msa1009440:three_prime_UTR |
| ATACTTACAACATAACCATC+AGG | 0.464286 | 7_1:-10881522 | None:intergenic |
| CACTTACTTATTAAACCATA+GGG | 0.468418 | 7_1:-10883321 | None:intergenic |
| CCAGGACCTGGTTATACTTG+TGG | 0.470576 | 7_1:+10882301 | Msa1009440:CDS |
| AAGGTGGTGTGCTTAGTTCA+TGG | 0.474312 | 7_1:+10882173 | Msa1009440:CDS |
| GGCAACCATGGATAAGCATC+AGG | 0.476022 | 7_1:-10884045 | None:intergenic |
| CAAATCAGTGTTGGTAGAGC+CGG | 0.480151 | 7_1:+10882229 | Msa1009440:CDS |
| CCACAAGTATAACCAGGTCC+TGG | 0.481453 | 7_1:-10882301 | None:intergenic |
| TACAAGTCATTAAATCCCTA+TGG | 0.482732 | 7_1:+10883306 | Msa1009440:CDS |
| GGAGGTAATCTGGAGTATGA+TGG | 0.483048 | 7_1:+10882018 | Msa1009440:CDS |
| GAGATTTGCTCATGCATCCC+AGG | 0.483177 | 7_1:+10884288 | Msa1009440:three_prime_UTR |
| TCTTGCCGAGAACCAGCATT+AGG | 0.485191 | 7_1:-10884066 | None:intergenic |
| ACACTTACTTATTAAACCAT+AGG | 0.491095 | 7_1:-10883322 | None:intergenic |
| CACAAGTATAACCAGGTCCT+GGG | 0.494196 | 7_1:-10882300 | None:intergenic |
| AGTTTATTCAACCAGACAAA+AGG | 0.499947 | 7_1:+10882350 | Msa1009440:CDS |
| CAAATTGCAAATTGCTGCAA+AGG | 0.500340 | 7_1:+10882154 | Msa1009440:CDS |
| ACATGCCAGTGGATTCGGAT+TGG | 0.505154 | 7_1:-10883147 | None:intergenic |
| CCCCTGGCTGGTCACTAGGA+TGG | 0.506120 | 7_1:+10881981 | Msa1009440:CDS |
| AGGTGGTGTGCTTAGTTCAT+GGG | 0.510178 | 7_1:+10882174 | Msa1009440:CDS |
| AGAAAGAAGAAGAGAATGCA+AGG | 0.510565 | 7_1:-10880527 | None:intergenic |
| AGAGAGAGAGTGGAAGAATG+TGG | 0.515186 | 7_1:-10880388 | None:intergenic |
| CAGGAGACTGACTGACTGGA+TGG | 0.515225 | 7_1:-10880349 | None:intergenic |
| TGGGAATATCACAATCAAAT+GGG | 0.515468 | 7_1:+10881482 | Msa1009440:CDS |
| GGTTGCCTAATGCTGGTTCT+CGG | 0.515595 | 7_1:+10884061 | Msa1009440:CDS |
| AAGCGATGTGACGATATTGT+TGG | 0.517365 | 7_1:-10881958 | None:intergenic |
| CAAGATCCTACCATGGCAGT+TGG | 0.517499 | 7_1:+10882199 | Msa1009440:CDS |
| ACCAGGTCCTGGGGCACTCA+AGG | 0.519598 | 7_1:-10882290 | None:intergenic |
| CGGATTGAACATTGCCACTA+GGG | 0.519794 | 7_1:-10883921 | None:intergenic |
| TGGCAGCCACATGCACATGT+TGG | 0.520435 | 7_1:-10882920 | None:intergenic |
| TTTGATTCATTGCAGTGACA+TGG | 0.521238 | 7_1:+10882801 | Msa1009440:intron |
| ACGGTAATTAAAATTAGTAA+TGG | 0.524317 | 7_1:-10883208 | None:intergenic |
| CAGAGTAACTCATCACAGTC+CGG | 0.525422 | 7_1:+10882941 | Msa1009440:CDS |
| AGGTTAACTACAAGGAATAC+TGG | 0.527274 | 7_1:+10883172 | Msa1009440:CDS |
| CTTAATCATGCTGGCCCTAG+TGG | 0.531245 | 7_1:+10883907 | Msa1009440:CDS |
| TATCGTCACATCGCTTCCCC+TGG | 0.531832 | 7_1:+10881965 | Msa1009440:CDS |
| GTCCATCCTAGTGACCAGCC+AGG | 0.533946 | 7_1:-10881983 | None:intergenic |
| ATATTCCCATTTGGGTCAAG+TGG | 0.535481 | 7_1:-10881468 | None:intergenic |
| AACATACTTAACACAAGTCC+CGG | 0.535871 | 7_1:-10882960 | None:intergenic |
| GGAAGTAAATCTACAACGGT+TGG | 0.536061 | 7_1:-10882112 | None:intergenic |
| GTCGTTATAGAAAGATGAGA+GGG | 0.537245 | 7_1:-10882882 | None:intergenic |
| ATCCTTTCGGAAGAGTAGCT+CGG | 0.537437 | 7_1:-10883941 | None:intergenic |
| AACTTCACCTTGAGTGCCCC+AGG | 0.537736 | 7_1:+10882283 | Msa1009440:CDS |
| TCCATCCTAGTGACCAGCCA+GGG | 0.540729 | 7_1:-10881982 | None:intergenic |
| GAGGTAATCTGGAGTATGAT+GGG | 0.541530 | 7_1:+10882019 | Msa1009440:CDS |
| ATACATCAACAAACATTACA+TGG | 0.546981 | 7_1:+10884440 | Msa1009440:three_prime_UTR |
| ACCTGGTTATACTTGTGGGC+CGG | 0.549078 | 7_1:+10882306 | Msa1009440:CDS |
| CATAGGATTCAGCATATTGG+TGG | 0.552396 | 7_1:+10884318 | Msa1009440:three_prime_UTR |
| TCTGGTTGAATAAACTGAGT+AGG | 0.553209 | 7_1:-10882343 | None:intergenic |
| CTGAACAACCAAGTTCCAAT+CGG | 0.553717 | 7_1:-10883241 | None:intergenic |
| AGAACAGGAGACTGACTGAC+TGG | 0.554146 | 7_1:-10880353 | None:intergenic |
| TCCAATCGGAATAATTCATA+CGG | 0.554746 | 7_1:-10883227 | None:intergenic |
| CCGTTGAAGTAGATCCTTCG+AGG | 0.556835 | 7_1:-10884000 | None:intergenic |
| GAATCCTATGTAACAATCCT+GGG | 0.559415 | 7_1:-10884305 | None:intergenic |
| CACCTCCTGATGCTTATCCA+TGG | 0.560301 | 7_1:+10884040 | Msa1009440:CDS |
| AAATGTGTATGTGAGAGTTA+TGG | 0.562971 | 7_1:-10880456 | None:intergenic |
| TCGGATTGAACATTGCCACT+AGG | 0.564514 | 7_1:-10883922 | None:intergenic |
| TAATGCTGGTTCTCGGCAAG+AGG | 0.565567 | 7_1:+10884068 | Msa1009440:CDS |
| TGAACAATCACCTTGTTCTG+TGG | 0.567033 | 7_1:-10882050 | None:intergenic |
| CGGACTGTGATGAGTTACTC+TGG | 0.567048 | 7_1:-10882940 | None:intergenic |
| AGATCCTACCATGGCAGTTG+GGG | 0.567928 | 7_1:+10882201 | Msa1009440:CDS |
| CATGGATAAGCATCAGGAGG+TGG | 0.572476 | 7_1:-10884039 | None:intergenic |
| CCCTGCCCAACATGTGCATG+TGG | 0.583543 | 7_1:+10882914 | Msa1009440:CDS |
| AGAGGGACTGACTATATACA+TGG | 0.583934 | 7_1:+10884255 | Msa1009440:three_prime_UTR |
| AGAGTAACTCATCACAGTCC+GGG | 0.585751 | 7_1:+10882942 | Msa1009440:CDS |
| GGAAGTGAAGAGAAGACTAT+GGG | 0.588224 | 7_1:-10880412 | None:intergenic |
| GGGGCGTTTCAAATCAGTGT+TGG | 0.588523 | 7_1:+10882220 | Msa1009440:CDS |
| GATAAAGTATAATCACAGGT+TGG | 0.588813 | 7_1:-10884157 | None:intergenic |
| AGGGCTGGGCTTTCCCTCGA+AGG | 0.589607 | 7_1:+10883986 | Msa1009440:CDS |
| TGTGTCCAATCCGAATCCAC+TGG | 0.591212 | 7_1:+10883142 | Msa1009440:CDS |
| TACTTACAACATAACCATCA+GGG | 0.593553 | 7_1:-10881521 | None:intergenic |
| TTGAAACGCCCCAACTGCCA+TGG | 0.594933 | 7_1:-10882209 | None:intergenic |
| GGATCACAGACCACAGAACA+AGG | 0.595290 | 7_1:+10882040 | Msa1009440:CDS |
| GCTGGTCACTAGGATGGACA+TGG | 0.597573 | 7_1:+10881987 | Msa1009440:CDS |
| GCCGGCCCACAAGTATAACC+AGG | 0.599635 | 7_1:-10882307 | None:intergenic |
| TGTCGTTATAGAAAGATGAG+AGG | 0.599773 | 7_1:-10882883 | None:intergenic |
| ATTATACAATGGACCCCTGA+TGG | 0.602448 | 7_1:+10881507 | Msa1009440:CDS |
| TGAGAGGGAGACACAGCAAG+TGG | 0.605441 | 7_1:-10882867 | None:intergenic |
| CAATGATAAAGTATAATCAC+AGG | 0.606313 | 7_1:-10884161 | None:intergenic |
| ATAGAATACTAAAACTGCCA+AGG | 0.608619 | 7_1:-10884118 | None:intergenic |
| AGTTAACCTTAACATGCCAG+TGG | 0.609000 | 7_1:-10883158 | None:intergenic |
| TGACTAGTACATTGAACCAA+AGG | 0.614394 | 7_1:-10883117 | None:intergenic |
| GCATGTTAAGGTTAACTACA+AGG | 0.617139 | 7_1:+10883164 | Msa1009440:CDS |
| CAAGGAATACTGGCGTGTGA+AGG | 0.617910 | 7_1:+10883182 | Msa1009440:CDS |
| GATGATACAGCAATGCTTTG+GGG | 0.620085 | 7_1:+10883862 | Msa1009440:intron |
| ATTGCAAATTGCTGCAAAGG+TGG | 0.622193 | 7_1:+10882157 | Msa1009440:CDS |
| CCTCGAAGGATCTACTTCAA+CGG | 0.625513 | 7_1:+10884000 | Msa1009440:CDS |
| TGTTGTTGATTCAAGATCTG+TGG | 0.627076 | 7_1:-10880433 | None:intergenic |
| TCAAATGGGATATTATACAA+TGG | 0.631980 | 7_1:+10881496 | Msa1009440:CDS |
| GAACCAGCATTAGGCAACCA+TGG | 0.634900 | 7_1:-10884057 | None:intergenic |
| ATCCGAGCTACTCTTCCGAA+AGG | 0.638631 | 7_1:+10883939 | Msa1009440:CDS |
| GAAGTTGTTCATCGTAACTG+TGG | 0.642636 | 7_1:-10881936 | None:intergenic |
| GAAACAACTGATGCCAAATG+TGG | 0.646724 | 7_1:-10883069 | None:intergenic |
| GAGAGGGAGACACAGCAAGT+GGG | 0.646972 | 7_1:-10882866 | None:intergenic |
| AGGAGACTGACTGACTGGAT+GGG | 0.648271 | 7_1:-10880348 | None:intergenic |
| CCACATGCACATGTTGGGCA+GGG | 0.652900 | 7_1:-10882914 | None:intergenic |
| GAATACTAAAACTGCCAAGG+AGG | 0.655744 | 7_1:-10884115 | None:intergenic |
| ACATGTTGGGCAGGGTACAA+TGG | 0.658775 | 7_1:-10882906 | None:intergenic |
| CGTTGAAGTAGATCCTTCGA+GGG | 0.658891 | 7_1:-10883999 | None:intergenic |
| TAAGCCTGATGAATCTTGTG+CGG | 0.659040 | 7_1:+10884468 | Msa1009440:three_prime_UTR |
| AACCATGGATAAGCATCAGG+AGG | 0.668253 | 7_1:-10884042 | None:intergenic |
| AACGCCCCAACTGCCATGGT+AGG | 0.675826 | 7_1:-10882205 | None:intergenic |
| ACTTACAACATAACCATCAG+GGG | 0.679147 | 7_1:-10881520 | None:intergenic |
| ACAAGTATAACCAGGTCCTG+GGG | 0.679236 | 7_1:-10882299 | None:intergenic |
| CCATCCTAGTGACCAGCCAG+GGG | 0.683887 | 7_1:-10881981 | None:intergenic |
| GGACTGACTATATACATGGG+TGG | 0.705667 | 7_1:+10884259 | Msa1009440:three_prime_UTR |
| GAGGGACTGACTATATACAT+GGG | 0.707343 | 7_1:+10884256 | Msa1009440:three_prime_UTR |
| TCCGGGAAGTAAATCTACAA+CGG | 0.714386 | 7_1:-10882116 | None:intergenic |
| ATGGGCTCAAGATCCTACCA+TGG | 0.715689 | 7_1:+10882192 | Msa1009440:CDS |
| CTGGTCACTAGGATGGACAT+GGG | 0.718386 | 7_1:+10881988 | Msa1009440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATGATTTATTATATG+AGG | + | chr7_1:10881214-10881233 | Msa1009440:intron | 10.0% |
| !! | TTTATAAAAACCTTATAATA+AGG | + | chr7_1:10881243-10881262 | Msa1009440:intron | 10.0% |
| !! | TTATAAAAACCTTATAATAA+GGG | + | chr7_1:10881244-10881263 | Msa1009440:intron | 10.0% |
| !!! | ATTAATATACTTACTATTTT+TGG | + | chr7_1:10881420-10881439 | Msa1009440:intron | 10.0% |
| !! | AAATATATCTAAATAACTAA+TGG | - | chr7_1:10881896-10881915 | None:intergenic | 10.0% |
| !!! | ATTTTGCATAATTTTTTTGT+TGG | + | chr7_1:10880640-10880659 | Msa1009440:intron | 15.0% |
| !! | TTACTATAAAAATTTGCATA+TGG | + | chr7_1:10880806-10880825 | Msa1009440:intron | 15.0% |
| !!! | TTTTTTGGTAAGAAATTATT+TGG | + | chr7_1:10880875-10880894 | Msa1009440:intron | 15.0% |
| !!! | ATTAAGTTGTTTATTTAATC+AGG | + | chr7_1:10881660-10881679 | Msa1009440:intron | 15.0% |
| !!! | TTAAGTTGTTTATTTAATCA+GGG | + | chr7_1:10881661-10881680 | Msa1009440:intron | 15.0% |
| !!! | ACTCATATTTATTTTCTTTT+TGG | + | chr7_1:10883030-10883049 | Msa1009440:intron | 15.0% |
| !! | TGGAAATATAATTAAAGAAC+AGG | - | chr7_1:10880371-10880390 | None:intergenic | 20.0% |
| !!! | TTTTCTAGCAAAAACAAAAA+TGG | + | chr7_1:10880478-10880497 | Msa1009440:exon | 20.0% |
| !!! | TTTCTAGCAAAAACAAAAAT+GGG | + | chr7_1:10880479-10880498 | Msa1009440:exon | 20.0% |
| !!! | AAAAATGTAATCTTTGTTTG+TGG | + | chr7_1:10880700-10880719 | Msa1009440:intron | 20.0% |
| !!! | AAAATGTAATCTTTGTTTGT+GGG | + | chr7_1:10880701-10880720 | Msa1009440:intron | 20.0% |
| !! | TAATTAAACACTTTACAATC+AGG | - | chr7_1:10881644-10881663 | None:intergenic | 20.0% |
| !! | AAAATTTAGGTAGTAATCTT+AGG | - | chr7_1:10881687-10881706 | None:intergenic | 20.0% |
| !!! | GACTTGGTTTTTAAAAATTT+AGG | - | chr7_1:10881700-10881719 | None:intergenic | 20.0% |
| !! | TAAGATCAAAGTTAAATTGT+GGG | - | chr7_1:10882774-10882793 | None:intergenic | 20.0% |
| !! | TTAAGATCAAAGTTAAATTG+TGG | - | chr7_1:10882775-10882794 | None:intergenic | 20.0% |
| !! | AAAGAATAATTTATCACCTT+TGG | + | chr7_1:10883101-10883120 | Msa1009440:CDS | 20.0% |
| !! | ACGGTAATTAAAATTAGTAA+TGG | - | chr7_1:10883211-10883230 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTTTTTCTCAGT+TGG | + | chr7_1:10883421-10883440 | Msa1009440:intron | 20.0% |
| !! | GTTAACACAATTCAAATAAA+CGG | - | chr7_1:10883748-10883767 | None:intergenic | 20.0% |
| !! | TAAAGTTACAACTTACAATA+AGG | - | chr7_1:10884400-10884419 | None:intergenic | 20.0% |
| !!! | TCATTTTTTACATATCGAGA+TGG | - | chr7_1:10881312-10881331 | None:intergenic | 25.0% |
| ! | TCAAATGGGATATTATACAA+TGG | + | chr7_1:10881496-10881515 | Msa1009440:CDS | 25.0% |
| ! | GGTGATTGTTCAAAATTTAA+AGG | + | chr7_1:10882061-10882080 | Msa1009440:CDS | 25.0% |
| ! | TTTACAGCATAAAATCTAGA+AGG | - | chr7_1:10883011-10883030 | None:intergenic | 25.0% |
| ! | CACTTACTTATTAAACCATA+GGG | - | chr7_1:10883324-10883343 | None:intergenic | 25.0% |
| ! | ACACTTACTTATTAAACCAT+AGG | - | chr7_1:10883325-10883344 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTTCTTGAGTAA+TGG | + | chr7_1:10883357-10883376 | Msa1009440:intron | 25.0% |
| ! | GGTTAATTACTTTCATTAGA+TGG | + | chr7_1:10883515-10883534 | Msa1009440:intron | 25.0% |
| ! | TACTTTCATTAGATGGTTAA+TGG | + | chr7_1:10883522-10883541 | Msa1009440:intron | 25.0% |
| ! | GATTTCATTAACCACAAATT+TGG | + | chr7_1:10883581-10883600 | Msa1009440:intron | 25.0% |
| !! | ACACAGTTATCCATAATTTT+CGG | - | chr7_1:10883659-10883678 | None:intergenic | 25.0% |
| ! | AAATTCATTCACCATGAATT+TGG | - | chr7_1:10883682-10883701 | None:intergenic | 25.0% |
| ! | GGTTAATTAAGTTCAATACT+TGG | - | chr7_1:10883727-10883746 | None:intergenic | 25.0% |
| !!! | TTTTGTGACAACTTTTTAAG+TGG | - | chr7_1:10883770-10883789 | None:intergenic | 25.0% |
| ! | TCACAAAAATTGTCTAAACT+TGG | + | chr7_1:10883782-10883801 | Msa1009440:intron | 25.0% |
| !! | AATGATTTTCTTAATCATGC+TGG | + | chr7_1:10883898-10883917 | Msa1009440:CDS | 25.0% |
| !! | TGAAAGTTGATTTATCCTTT+CGG | - | chr7_1:10883957-10883976 | None:intergenic | 25.0% |
| !!! | ATCAACTTTCACTTTTGATA+AGG | + | chr7_1:10883966-10883985 | Msa1009440:CDS | 25.0% |
| !!! | TCAACTTTCACTTTTGATAA+GGG | + | chr7_1:10883967-10883986 | Msa1009440:CDS | 25.0% |
| ! | TTCATTGTTTGCTTTAGTAA+TGG | + | chr7_1:10884092-10884111 | Msa1009440:CDS | 25.0% |
| ! | GTATTCTATGCATATGTTTA+AGG | + | chr7_1:10884132-10884151 | Msa1009440:CDS | 25.0% |
| ! | CAATGATAAAGTATAATCAC+AGG | - | chr7_1:10884164-10884183 | None:intergenic | 25.0% |
| ! | TCATATTTGTGATGTCAATT+TGG | + | chr7_1:10884218-10884237 | Msa1009440:three_prime_UTR | 25.0% |
| ! | ATACATCAACAAACATTACA+TGG | + | chr7_1:10884440-10884459 | Msa1009440:three_prime_UTR | 25.0% |
| AAATGTGTATGTGAGAGTTA+TGG | - | chr7_1:10880459-10880478 | None:intergenic | 30.0% | |
| ! | TATGTGTTTATTTCCCCTTT+TGG | + | chr7_1:10880942-10880961 | Msa1009440:intron | 30.0% |
| !!! | GTGTGTTTTAAAGGTATGTT+TGG | + | chr7_1:10880973-10880992 | Msa1009440:intron | 30.0% |
| TGTTCAAGTCAATTGATCAA+TGG | - | chr7_1:10881359-10881378 | None:intergenic | 30.0% | |
| TGATTGTGATATTCCCATTT+GGG | - | chr7_1:10881479-10881498 | None:intergenic | 30.0% | |
| TTGATTGTGATATTCCCATT+TGG | - | chr7_1:10881480-10881499 | None:intergenic | 30.0% | |
| ATGGGAATATCACAATCAAA+TGG | + | chr7_1:10881481-10881500 | Msa1009440:CDS | 30.0% | |
| TGGGAATATCACAATCAAAT+GGG | + | chr7_1:10881482-10881501 | Msa1009440:CDS | 30.0% | |
| TACTTACAACATAACCATCA+GGG | - | chr7_1:10881524-10881543 | None:intergenic | 30.0% | |
| ATACTTACAACATAACCATC+AGG | - | chr7_1:10881525-10881544 | None:intergenic | 30.0% | |
| !! | TGACTACTTTTCTTTCAAAC+AGG | + | chr7_1:10881616-10881635 | Msa1009440:intron | 30.0% |
| !! | GACTACTTTTCTTTCAAACA+GGG | + | chr7_1:10881617-10881636 | Msa1009440:intron | 30.0% |
| ! | TGAAGCGTCATATTTCAAAT+TGG | - | chr7_1:10881731-10881750 | None:intergenic | 30.0% |
| CTTCAAAATCATTTCTAACG+CGG | - | chr7_1:10881776-10881795 | None:intergenic | 30.0% | |
| CAAACACAGTTTATTCTTCA+AGG | - | chr7_1:10881865-10881884 | None:intergenic | 30.0% | |
| ! | TTTTGAACAATTGAATGTGC+AGG | + | chr7_1:10881913-10881932 | Msa1009440:intron | 30.0% |
| !! | TTTGCAATTTGCTGATTGTA+AGG | - | chr7_1:10882145-10882164 | None:intergenic | 30.0% |
| !!! | CACTTTAACAGTTTTGTTTG+TGG | - | chr7_1:10882257-10882276 | None:intergenic | 30.0% |
| AGTTTATTCAACCAGACAAA+AGG | + | chr7_1:10882350-10882369 | Msa1009440:CDS | 30.0% | |
| ACAAAAACTTCAACTATGGA+TGG | - | chr7_1:10882495-10882514 | None:intergenic | 30.0% | |
| ! | TCCATAGTTGAAGTTTTTGT+TGG | + | chr7_1:10882495-10882514 | Msa1009440:intron | 30.0% |
| ! | TTTTTGTTGGCAACAGAAAA+TGG | + | chr7_1:10882508-10882527 | Msa1009440:intron | 30.0% |
| TCCAATCGGAATAATTCATA+CGG | - | chr7_1:10883230-10883249 | None:intergenic | 30.0% | |
| TACAAGTCATTAAATCCCTA+TGG | + | chr7_1:10883306-10883325 | Msa1009440:CDS | 30.0% | |
| AAGAAACAAACAAACAAGGT+CGG | - | chr7_1:10883351-10883370 | None:intergenic | 30.0% | |
| ACTCAAGAAACAAACAAACA+AGG | - | chr7_1:10883355-10883374 | None:intergenic | 30.0% | |
| GTTAATCACATCCAAATTTG+TGG | - | chr7_1:10883595-10883614 | None:intergenic | 30.0% | |
| GTGTTAAACTACATGTAGAT+TGG | - | chr7_1:10883636-10883655 | None:intergenic | 30.0% | |
| AGTTTAACACCCGAAAATTA+TGG | + | chr7_1:10883646-10883665 | Msa1009440:intron | 30.0% | |
| ! | CACAGTTATCCATAATTTTC+GGG | - | chr7_1:10883658-10883677 | None:intergenic | 30.0% |
| TAAGTTCAATACTTGGTCAA+TGG | - | chr7_1:10883720-10883739 | None:intergenic | 30.0% | |
| ATAGAATACTAAAACTGCCA+AGG | - | chr7_1:10884121-10884140 | None:intergenic | 30.0% | |
| GATAAAGTATAATCACAGGT+TGG | - | chr7_1:10884160-10884179 | None:intergenic | 30.0% | |
| ! | ATTTTCAGTCTAACCAGTTT+TGG | + | chr7_1:10884193-10884212 | Msa1009440:three_prime_UTR | 30.0% |
| !!! | TGATGTCAATTTGGTTTTCA+AGG | + | chr7_1:10884227-10884246 | Msa1009440:three_prime_UTR | 30.0% |
| TTACATAGGATTCAGCATAT+TGG | + | chr7_1:10884315-10884334 | Msa1009440:three_prime_UTR | 30.0% | |
| !! | TGTTGTTGATTCAAGATCTG+TGG | - | chr7_1:10880436-10880455 | None:intergenic | 35.0% |
| AGAAAGAAGAAGAGAATGCA+AGG | - | chr7_1:10880530-10880549 | None:intergenic | 35.0% | |
| CTACTTTCTTTCACTTCAAC+AGG | + | chr7_1:10880548-10880567 | Msa1009440:CDS | 35.0% | |
| !!! | TTATTTCCCCTTTTGGAGTT+TGG | + | chr7_1:10880949-10880968 | Msa1009440:intron | 35.0% |
| !! | GAGTTTGGAGTGTGTTTTAA+AGG | + | chr7_1:10880964-10880983 | Msa1009440:intron | 35.0% |
| ! | GTTTGGATTGACTTATTTGC+TGG | + | chr7_1:10880990-10881009 | Msa1009440:intron | 35.0% |
| ACCTTATAATAAGGGAACAC+AGG | + | chr7_1:10881252-10881271 | Msa1009440:intron | 35.0% | |
| ACCTGTGTTCCCTTATTATA+AGG | - | chr7_1:10881256-10881275 | None:intergenic | 35.0% | |
| TAATAAGGGAACACAGGTAT+AGG | + | chr7_1:10881258-10881277 | Msa1009440:intron | 35.0% | |
| GGTATAGGTTGTGTATAAGA+TGG | + | chr7_1:10881273-10881292 | Msa1009440:intron | 35.0% | |
| ACTTACAACATAACCATCAG+GGG | - | chr7_1:10881523-10881542 | None:intergenic | 35.0% | |
| CAAATTGGAACAAAGTGACT+TGG | - | chr7_1:10881716-10881735 | None:intergenic | 35.0% | |
| ! | GGATTCTTTTTACAGCAATG+TGG | - | chr7_1:10882094-10882113 | None:intergenic | 35.0% |
| CAAATTGCAAATTGCTGCAA+AGG | + | chr7_1:10882154-10882173 | Msa1009440:CDS | 35.0% | |
| !!! | AACAGTTTTGTTTGTGGTTC+CGG | - | chr7_1:10882251-10882270 | None:intergenic | 35.0% |
| TCTGGTTGAATAAACTGAGT+AGG | - | chr7_1:10882346-10882365 | None:intergenic | 35.0% | |
| AATAGTGTGACATTGATAGG+AGG | - | chr7_1:10882458-10882477 | None:intergenic | 35.0% | |
| GTGAATAGTGTGACATTGAT+AGG | - | chr7_1:10882461-10882480 | None:intergenic | 35.0% | |
| GCCAACAAAAACTTCAACTA+TGG | - | chr7_1:10882499-10882518 | None:intergenic | 35.0% | |
| AATATCAGTGCTACATAGCT+CGG | - | chr7_1:10882580-10882599 | None:intergenic | 35.0% | |
| ! | GCACTGATATTTCAGATTGA+AGG | + | chr7_1:10882589-10882608 | Msa1009440:intron | 35.0% |
| ! | TATCGATGTTTTGTCAGTGT+TGG | - | chr7_1:10882627-10882646 | None:intergenic | 35.0% |
| TGTCTTTGTCTGTGTTTGAT+AGG | + | chr7_1:10882718-10882737 | Msa1009440:intron | 35.0% | |
| TTTGATTCATTGCAGTGACA+TGG | + | chr7_1:10882801-10882820 | Msa1009440:intron | 35.0% | |
| GTCGTTATAGAAAGATGAGA+GGG | - | chr7_1:10882885-10882904 | None:intergenic | 35.0% | |
| TGTCGTTATAGAAAGATGAG+AGG | - | chr7_1:10882886-10882905 | None:intergenic | 35.0% | |
| AACATACTTAACACAAGTCC+CGG | - | chr7_1:10882963-10882982 | None:intergenic | 35.0% | |
| TGACTAGTACATTGAACCAA+AGG | - | chr7_1:10883120-10883139 | None:intergenic | 35.0% | |
| GCATGTTAAGGTTAACTACA+AGG | + | chr7_1:10883164-10883183 | Msa1009440:CDS | 35.0% | |
| AGGTTAACTACAAGGAATAC+TGG | + | chr7_1:10883172-10883191 | Msa1009440:CDS | 35.0% | |
| ACCGTATGAATTATTCCGAT+TGG | + | chr7_1:10883226-10883245 | Msa1009440:CDS | 35.0% | |
| GAATTATTCCGATTGGAACT+TGG | + | chr7_1:10883233-10883252 | Msa1009440:CDS | 35.0% | |
| TGAGTCAGATTGTCAAAGTT+TGG | - | chr7_1:10883270-10883289 | None:intergenic | 35.0% | |
| ! | AGATGGTTAATGGATGTACA+AGG | + | chr7_1:10883532-10883551 | Msa1009440:intron | 35.0% |
| TTGGAACACGTGAAAAAAAG+AGG | - | chr7_1:10883617-10883636 | None:intergenic | 35.0% | |
| GATAACTGTGTCCAAATTCA+TGG | + | chr7_1:10883668-10883687 | Msa1009440:intron | 35.0% | |
| AGATGATACAGCAATGCTTT+GGG | + | chr7_1:10883861-10883880 | Msa1009440:intron | 35.0% | |
| !! | TTTCACTTTTGATAAGGGCT+GGG | + | chr7_1:10883972-10883991 | Msa1009440:CDS | 35.0% |
| GAATCCTATGTAACAATCCT+GGG | - | chr7_1:10884308-10884327 | None:intergenic | 35.0% | |
| TGAATCCTATGTAACAATCC+TGG | - | chr7_1:10884309-10884328 | None:intergenic | 35.0% | |
| GGAAGTGAAGAGAAGACTAT+GGG | - | chr7_1:10880415-10880434 | None:intergenic | 40.0% | |
| TGGAAGTGAAGAGAAGACTA+TGG | - | chr7_1:10880416-10880435 | None:intergenic | 40.0% | |
| ACACACTCCAAACTCCAAAA+GGG | - | chr7_1:10880959-10880978 | None:intergenic | 40.0% | |
| AACACACTCCAAACTCCAAA+AGG | - | chr7_1:10880960-10880979 | None:intergenic | 40.0% | |
| ! | AGCAATTGTGAGCTTGTTTG+AGG | + | chr7_1:10881017-10881036 | Msa1009440:intron | 40.0% |
| ! | GCAATTGTGAGCTTGTTTGA+GGG | + | chr7_1:10881018-10881037 | Msa1009440:intron | 40.0% |
| TATGATCCACTTGACCCAAA+TGG | + | chr7_1:10881462-10881481 | Msa1009440:CDS | 40.0% | |
| ATGATCCACTTGACCCAAAT+GGG | + | chr7_1:10881463-10881482 | Msa1009440:CDS | 40.0% | |
| ATATTCCCATTTGGGTCAAG+TGG | - | chr7_1:10881471-10881490 | None:intergenic | 40.0% | |
| ATTATACAATGGACCCCTGA+TGG | + | chr7_1:10881507-10881526 | Msa1009440:CDS | 40.0% | |
| GAAGTTGTTCATCGTAACTG+TGG | - | chr7_1:10881939-10881958 | None:intergenic | 40.0% | |
| AAGCGATGTGACGATATTGT+TGG | - | chr7_1:10881961-10881980 | None:intergenic | 40.0% | |
| ! | GAGGTAATCTGGAGTATGAT+GGG | + | chr7_1:10882019-10882038 | Msa1009440:CDS | 40.0% |
| TGAACAATCACCTTGTTCTG+TGG | - | chr7_1:10882053-10882072 | None:intergenic | 40.0% | |
| GGAAGTAAATCTACAACGGT+TGG | - | chr7_1:10882115-10882134 | None:intergenic | 40.0% | |
| ACCGTTGTAGATTTACTTCC+CGG | + | chr7_1:10882115-10882134 | Msa1009440:CDS | 40.0% | |
| TCCGGGAAGTAAATCTACAA+CGG | - | chr7_1:10882119-10882138 | None:intergenic | 40.0% | |
| ATTGCAAATTGCTGCAAAGG+TGG | + | chr7_1:10882157-10882176 | Msa1009440:CDS | 40.0% | |
| ! | GCACTCAAGGTGAAGTTTTT+AGG | - | chr7_1:10882280-10882299 | None:intergenic | 40.0% |
| ! | GTAGGTCTCACAATTTTTGC+CGG | - | chr7_1:10882328-10882347 | None:intergenic | 40.0% |
| ATATCAGTGCTACATAGCTC+GGG | - | chr7_1:10882579-10882598 | None:intergenic | 40.0% | |
| TCAAACACAGACAAAGACAC+CGG | - | chr7_1:10882717-10882736 | None:intergenic | 40.0% | |
| AGTGATGAGTAGATATCAGC+AGG | + | chr7_1:10882746-10882765 | Msa1009440:intron | 40.0% | |
| GAAACAACTGATGCCAAATG+TGG | - | chr7_1:10883072-10883091 | None:intergenic | 40.0% | |
| ! | CATTTGGCATCAGTTGTTTC+TGG | + | chr7_1:10883072-10883091 | Msa1009440:CDS | 40.0% |
| !! | GCATCAGTTGTTTCTGGTAA+TGG | + | chr7_1:10883078-10883097 | Msa1009440:CDS | 40.0% |
| AGTTAACCTTAACATGCCAG+TGG | - | chr7_1:10883161-10883180 | None:intergenic | 40.0% | |
| CTGAACAACCAAGTTCCAAT+CGG | - | chr7_1:10883244-10883263 | None:intergenic | 40.0% | |
| ! | TTTTGCGACGACAATCTAAG+TGG | + | chr7_1:10883472-10883491 | Msa1009440:intron | 40.0% |
| GTGGTTAATGCAGTTCACAT+AGG | + | chr7_1:10883491-10883510 | Msa1009440:intron | 40.0% | |
| GTTAATGCAGTTCACATAGG+TGG | + | chr7_1:10883494-10883513 | Msa1009440:intron | 40.0% | |
| ACTTGGTCAATGGATATACC+AGG | - | chr7_1:10883710-10883729 | None:intergenic | 40.0% | |
| CAGATGATACAGCAATGCTT+TGG | + | chr7_1:10883860-10883879 | Msa1009440:intron | 40.0% | |
| GATGATACAGCAATGCTTTG+GGG | + | chr7_1:10883862-10883881 | Msa1009440:intron | 40.0% | |
| !! | CTTTCACTTTTGATAAGGGC+TGG | + | chr7_1:10883971-10883990 | Msa1009440:CDS | 40.0% |
| GAATACTAAAACTGCCAAGG+AGG | - | chr7_1:10884118-10884137 | None:intergenic | 40.0% | |
| CACAAATATGACGCCAAAAC+TGG | - | chr7_1:10884209-10884228 | None:intergenic | 40.0% | |
| AGAGGGACTGACTATATACA+TGG | + | chr7_1:10884255-10884274 | Msa1009440:three_prime_UTR | 40.0% | |
| GAGGGACTGACTATATACAT+GGG | + | chr7_1:10884256-10884275 | Msa1009440:three_prime_UTR | 40.0% | |
| CATAGGATTCAGCATATTGG+TGG | + | chr7_1:10884318-10884337 | Msa1009440:three_prime_UTR | 40.0% | |
| TAAGCCTGATGAATCTTGTG+CGG | + | chr7_1:10884468-10884487 | Msa1009440:three_prime_UTR | 40.0% | |
| AGAGAGAGAGTGGAAGAATG+TGG | - | chr7_1:10880391-10880410 | None:intergenic | 45.0% | |
| CACACTCCAAACTCCAAAAG+GGG | - | chr7_1:10880958-10880977 | None:intergenic | 45.0% | |
| ! | CGCGGTTTAGAAGTGTGATA+AGG | - | chr7_1:10881758-10881777 | None:intergenic | 45.0% |
| AGGATGGACATGGGCAAAAA+AGG | + | chr7_1:10881997-10882016 | Msa1009440:CDS | 45.0% | |
| ATGGACATGGGCAAAAAAGG+AGG | + | chr7_1:10882000-10882019 | Msa1009440:CDS | 45.0% | |
| GGGCAAAAAAGGAGGTAATC+TGG | + | chr7_1:10882008-10882027 | Msa1009440:CDS | 45.0% | |
| ! | GGAGGTAATCTGGAGTATGA+TGG | + | chr7_1:10882018-10882037 | Msa1009440:CDS | 45.0% |
| ! | TTGCTGATTGTAAGGCGTTC+CGG | - | chr7_1:10882137-10882156 | None:intergenic | 45.0% |
| AAGGTGGTGTGCTTAGTTCA+TGG | + | chr7_1:10882173-10882192 | Msa1009440:CDS | 45.0% | |
| AGGTGGTGTGCTTAGTTCAT+GGG | + | chr7_1:10882174-10882193 | Msa1009440:CDS | 45.0% | |
| AAGATCCTACCATGGCAGTT+GGG | + | chr7_1:10882200-10882219 | Msa1009440:CDS | 45.0% | |
| !! | CAAATCAGTGTTGGTAGAGC+CGG | + | chr7_1:10882229-10882248 | Msa1009440:CDS | 45.0% |
| ACAAGTATAACCAGGTCCTG+GGG | - | chr7_1:10882302-10882321 | None:intergenic | 45.0% | |
| CACAAGTATAACCAGGTCCT+GGG | - | chr7_1:10882303-10882322 | None:intergenic | 45.0% | |
| CAGGACCTGGTTATACTTGT+GGG | + | chr7_1:10882302-10882321 | Msa1009440:CDS | 45.0% | |
| ! | TGAGTCACTCTCCTTTTGTC+TGG | - | chr7_1:10882364-10882383 | None:intergenic | 45.0% |
| ! | GTGACATTGATAGGAGGCAT+AGG | - | chr7_1:10882452-10882471 | None:intergenic | 45.0% |
| CAGAGTAACTCATCACAGTC+CGG | + | chr7_1:10882941-10882960 | Msa1009440:CDS | 45.0% | |
| AGAGTAACTCATCACAGTCC+GGG | + | chr7_1:10882942-10882961 | Msa1009440:CDS | 45.0% | |
| CAGTCCAAATACGCCACATT+TGG | + | chr7_1:10883056-10883075 | Msa1009440:intron | 45.0% | |
| GATGCCAAATGTGGCGTATT+TGG | - | chr7_1:10883063-10883082 | None:intergenic | 45.0% | |
| ! | CCTTAACATGCCAGTGGATT+CGG | - | chr7_1:10883155-10883174 | None:intergenic | 45.0% |
| GGTGAATGAATTTCGACACC+TGG | + | chr7_1:10883689-10883708 | Msa1009440:intron | 45.0% | |
| CGGATTGAACATTGCCACTA+GGG | - | chr7_1:10883924-10883943 | None:intergenic | 45.0% | |
| TCGGATTGAACATTGCCACT+AGG | - | chr7_1:10883925-10883944 | None:intergenic | 45.0% | |
| ATCCTTTCGGAAGAGTAGCT+CGG | - | chr7_1:10883944-10883963 | None:intergenic | 45.0% | |
| CGTTGAAGTAGATCCTTCGA+GGG | - | chr7_1:10884002-10884021 | None:intergenic | 45.0% | |
| CCTCGAAGGATCTACTTCAA+CGG | + | chr7_1:10884000-10884019 | Msa1009440:CDS | 45.0% | |
| AACCATGGATAAGCATCAGG+AGG | - | chr7_1:10884045-10884064 | None:intergenic | 45.0% | |
| TATCCATGGTTGCCTAATGC+TGG | + | chr7_1:10884054-10884073 | Msa1009440:CDS | 45.0% | |
| TGCTTTAGTAATGGCCTCCT+TGG | + | chr7_1:10884101-10884120 | Msa1009440:CDS | 45.0% | |
| !! | TTGGTTTTCAAGGCGATCAG+AGG | + | chr7_1:10884237-10884256 | Msa1009440:three_prime_UTR | 45.0% |
| !! | TGGTTTTCAAGGCGATCAGA+GGG | + | chr7_1:10884238-10884257 | Msa1009440:three_prime_UTR | 45.0% |
| GGACTGACTATATACATGGG+TGG | + | chr7_1:10884259-10884278 | Msa1009440:three_prime_UTR | 45.0% | |
| GCATCCCAGGATTGTTACAT+AGG | + | chr7_1:10884301-10884320 | Msa1009440:three_prime_UTR | 45.0% | |
| AAGTCCGCACAAGATTCATC+AGG | - | chr7_1:10884475-10884494 | None:intergenic | 45.0% | |
| !!! | ATCTTTTTTTTTTTTTTTTT+TGG | + | chr7_1:10880860-10880879 | Msa1009440:intron | 5.0% |
| AGGAGACTGACTGACTGGAT+GGG | - | chr7_1:10880351-10880370 | None:intergenic | 50.0% | |
| AGAACAGGAGACTGACTGAC+TGG | - | chr7_1:10880356-10880375 | None:intergenic | 50.0% | |
| GACTATGGGAAGAGAGAGAG+TGG | - | chr7_1:10880401-10880420 | None:intergenic | 50.0% | |
| CTGGTCACTAGGATGGACAT+GGG | + | chr7_1:10881988-10882007 | Msa1009440:CDS | 50.0% | |
| GGATCACAGACCACAGAACA+AGG | + | chr7_1:10882040-10882059 | Msa1009440:CDS | 50.0% | |
| ! | TGCTGATTGTAAGGCGTTCC+GGG | - | chr7_1:10882136-10882155 | None:intergenic | 50.0% |
| ATGGGCTCAAGATCCTACCA+TGG | + | chr7_1:10882192-10882211 | Msa1009440:CDS | 50.0% | |
| CAAGATCCTACCATGGCAGT+TGG | + | chr7_1:10882199-10882218 | Msa1009440:CDS | 50.0% | |
| AGATCCTACCATGGCAGTTG+GGG | + | chr7_1:10882201-10882220 | Msa1009440:CDS | 50.0% | |
| ! | GGGGCGTTTCAAATCAGTGT+TGG | + | chr7_1:10882220-10882239 | Msa1009440:CDS | 50.0% |
| CCACAAGTATAACCAGGTCC+TGG | - | chr7_1:10882304-10882323 | None:intergenic | 50.0% | |
| CCAGGACCTGGTTATACTTG+TGG | + | chr7_1:10882301-10882320 | Msa1009440:CDS | 50.0% | |
| ACCTGGTTATACTTGTGGGC+CGG | + | chr7_1:10882306-10882325 | Msa1009440:CDS | 50.0% | |
| ACATGTTGGGCAGGGTACAA+TGG | - | chr7_1:10882909-10882928 | None:intergenic | 50.0% | |
| CGGACTGTGATGAGTTACTC+TGG | - | chr7_1:10882943-10882962 | None:intergenic | 50.0% | |
| TGTGTCCAATCCGAATCCAC+TGG | + | chr7_1:10883142-10883161 | Msa1009440:CDS | 50.0% | |
| ! | ACATGCCAGTGGATTCGGAT+TGG | - | chr7_1:10883150-10883169 | None:intergenic | 50.0% |
| CCGAATCCACTGGCATGTTA+AGG | + | chr7_1:10883152-10883171 | Msa1009440:CDS | 50.0% | |
| CAAGGAATACTGGCGTGTGA+AGG | + | chr7_1:10883182-10883201 | Msa1009440:CDS | 50.0% | |
| CTTAATCATGCTGGCCCTAG+TGG | + | chr7_1:10883907-10883926 | Msa1009440:CDS | 50.0% | |
| ATCCGAGCTACTCTTCCGAA+AGG | + | chr7_1:10883939-10883958 | Msa1009440:CDS | 50.0% | |
| CCGTTGAAGTAGATCCTTCG+AGG | - | chr7_1:10884003-10884022 | None:intergenic | 50.0% | |
| CATGGATAAGCATCAGGAGG+TGG | - | chr7_1:10884042-10884061 | None:intergenic | 50.0% | |
| CACCTCCTGATGCTTATCCA+TGG | + | chr7_1:10884040-10884059 | Msa1009440:CDS | 50.0% | |
| GGCAACCATGGATAAGCATC+AGG | - | chr7_1:10884048-10884067 | None:intergenic | 50.0% | |
| GAACCAGCATTAGGCAACCA+TGG | - | chr7_1:10884060-10884079 | None:intergenic | 50.0% | |
| !! | GGTTGCCTAATGCTGGTTCT+CGG | + | chr7_1:10884061-10884080 | Msa1009440:CDS | 50.0% |
| TCTTGCCGAGAACCAGCATT+AGG | - | chr7_1:10884069-10884088 | None:intergenic | 50.0% | |
| !! | TAATGCTGGTTCTCGGCAAG+AGG | + | chr7_1:10884068-10884087 | Msa1009440:CDS | 50.0% |
| ! | GAGATTTGCTCATGCATCCC+AGG | + | chr7_1:10884288-10884307 | Msa1009440:three_prime_UTR | 50.0% |
| CAGGAGACTGACTGACTGGA+TGG | - | chr7_1:10880352-10880371 | None:intergenic | 55.0% | |
| TATCGTCACATCGCTTCCCC+TGG | + | chr7_1:10881965-10881984 | Msa1009440:CDS | 55.0% | |
| TCCATCCTAGTGACCAGCCA+GGG | - | chr7_1:10881985-10882004 | None:intergenic | 55.0% | |
| GCTGGTCACTAGGATGGACA+TGG | + | chr7_1:10881987-10882006 | Msa1009440:CDS | 55.0% | |
| TTGAAACGCCCCAACTGCCA+TGG | - | chr7_1:10882212-10882231 | None:intergenic | 55.0% | |
| AACTTCACCTTGAGTGCCCC+AGG | + | chr7_1:10882283-10882302 | Msa1009440:CDS | 55.0% | |
| CGACGTGTCAGTGTTGTGTC+CGG | + | chr7_1:10882695-10882714 | Msa1009440:intron | 55.0% | |
| GAGAGGGAGACACAGCAAGT+GGG | - | chr7_1:10882869-10882888 | None:intergenic | 55.0% | |
| TGAGAGGGAGACACAGCAAG+TGG | - | chr7_1:10882870-10882889 | None:intergenic | 55.0% | |
| CCACATGCACATGTTGGGCA+GGG | - | chr7_1:10882917-10882936 | None:intergenic | 55.0% | |
| GGCAGCCACATGCACATGTT+GGG | - | chr7_1:10882922-10882941 | None:intergenic | 55.0% | |
| TGGCAGCCACATGCACATGT+TGG | - | chr7_1:10882923-10882942 | None:intergenic | 55.0% | |
| CCATCCTAGTGACCAGCCAG+GGG | - | chr7_1:10881984-10882003 | None:intergenic | 60.0% | |
| GTCCATCCTAGTGACCAGCC+AGG | - | chr7_1:10881986-10882005 | None:intergenic | 60.0% | |
| AACGCCCCAACTGCCATGGT+AGG | - | chr7_1:10882208-10882227 | None:intergenic | 60.0% | |
| GCCGGCCCACAAGTATAACC+AGG | - | chr7_1:10882310-10882329 | None:intergenic | 60.0% | |
| CCCTGCCCAACATGTGCATG+TGG | + | chr7_1:10882914-10882933 | Msa1009440:CDS | 60.0% | |
| GCCACATGCACATGTTGGGC+AGG | - | chr7_1:10882918-10882937 | None:intergenic | 60.0% | |
| GTCACATCGCTTCCCCTGGC+TGG | + | chr7_1:10881969-10881988 | Msa1009440:CDS | 65.0% | |
| ! | GCTTCCCCTGGCTGGTCACT+AGG | + | chr7_1:10881977-10881996 | Msa1009440:CDS | 65.0% |
| ! | CCCCTGGCTGGTCACTAGGA+TGG | + | chr7_1:10881981-10882000 | Msa1009440:CDS | 65.0% |
| ACCTTGAGTGCCCCAGGACC+TGG | + | chr7_1:10882289-10882308 | Msa1009440:CDS | 65.0% | |
| ! | ACCAGGTCCTGGGGCACTCA+AGG | - | chr7_1:10882293-10882312 | None:intergenic | 65.0% |
| AGGGCTGGGCTTTCCCTCGA+AGG | + | chr7_1:10883986-10884005 | Msa1009440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 10880323 | 10884496 | 10880323 | ID=Msa1009440;Name=Msa1009440 |
| chr7_1 | mRNA | 10880323 | 10884496 | 10880323 | ID=Msa1009440-mRNA-1;Parent=Msa1009440;Name=Msa1009440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=174|1|1|1|1|1|6|344|445 |
| chr7_1 | exon | 10880323 | 10880569 | 10880323 | ID=Msa1009440-mRNA-1:exon:2901;Parent=Msa1009440-mRNA-1 |
| chr7_1 | exon | 10881457 | 10881536 | 10881457 | ID=Msa1009440-mRNA-1:exon:2902;Parent=Msa1009440-mRNA-1 |
| chr7_1 | exon | 10881935 | 10882391 | 10881935 | ID=Msa1009440-mRNA-1:exon:2903;Parent=Msa1009440-mRNA-1 |
| chr7_1 | exon | 10882816 | 10882975 | 10882816 | ID=Msa1009440-mRNA-1:exon:2904;Parent=Msa1009440-mRNA-1 |
| chr7_1 | exon | 10883059 | 10883336 | 10883059 | ID=Msa1009440-mRNA-1:exon:2905;Parent=Msa1009440-mRNA-1 |
| chr7_1 | exon | 10883863 | 10884496 | 10883863 | ID=Msa1009440-mRNA-1:exon:2906;Parent=Msa1009440-mRNA-1 |
| chr7_1 | five_prime_UTR | 10880323 | 10880496 | 10880323 | ID=Msa1009440-mRNA-1:five_prime_utr;Parent=Msa1009440-mRNA-1 |
| chr7_1 | CDS | 10880497 | 10880569 | 10880497 | ID=Msa1009440-mRNA-1:cds;Parent=Msa1009440-mRNA-1 |
| chr7_1 | CDS | 10881457 | 10881536 | 10881457 | ID=Msa1009440-mRNA-1:cds;Parent=Msa1009440-mRNA-1 |
| chr7_1 | CDS | 10881935 | 10882391 | 10881935 | ID=Msa1009440-mRNA-1:cds;Parent=Msa1009440-mRNA-1 |
| chr7_1 | CDS | 10882816 | 10882975 | 10882816 | ID=Msa1009440-mRNA-1:cds;Parent=Msa1009440-mRNA-1 |
| chr7_1 | CDS | 10883059 | 10883336 | 10883059 | ID=Msa1009440-mRNA-1:cds;Parent=Msa1009440-mRNA-1 |
| chr7_1 | CDS | 10883863 | 10884152 | 10883863 | ID=Msa1009440-mRNA-1:cds;Parent=Msa1009440-mRNA-1 |
| chr7_1 | three_prime_UTR | 10884153 | 10884496 | 10884153 | ID=Msa1009440-mRNA-1:three_prime_utr;Parent=Msa1009440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
