Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053320 | RVW69902.1 | 65.217 | 92 | 20 | 2 | 1 | 80 | 1 | 92 | 2.20e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053320 | A0A6N2MG35 | 81.013 | 79 | 14 | 1 | 1 | 78 | 1 | 79 | 3.08e-36 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1011810 | Msa1053320 | 0.855539 | 5.896467e-62 | -8.615850e-47 |
| Msa1011830 | Msa1053320 | 0.855577 | 5.747162e-62 | -8.615850e-47 |
| Msa1011850 | Msa1053320 | 0.853877 | 1.787174e-61 | -8.615850e-47 |
| Msa1011860 | Msa1053320 | 0.800042 | 1.735291e-48 | -8.615850e-47 |
| Msa1053300 | Msa1053320 | 0.868987 | 4.337362e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053320 | MtrunA17_Chr7g0223391 | 94.737 | 57 | 3 | 0 | 24 | 80 | 98 | 154 | 2.33e-33 | 112 |
| Msa1053320 | MtrunA17_Chr7g0223401 | 82.540 | 63 | 11 | 0 | 18 | 80 | 80 | 142 | 8.65e-32 | 107 |
| Msa1053320 | MtrunA17_Chr8g0356181 | 52.174 | 69 | 29 | 2 | 15 | 80 | 73 | 140 | 3.04e-14 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053320 | AT2G44310.1 | 49.123 | 57 | 27 | 1 | 24 | 78 | 81 | 137 | 1.18e-11 | 56.6 |
Find 16 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTAAGCAGCCACTTTAC+CGG | 0.324149 | 7_2:+22752147 | None:intergenic |
| CTTGAATGGCACGGTTGATC+TGG | 0.357110 | 7_2:-22752290 | Msa1053320:CDS |
| TATTAAATGCTTCATCTTCA+AGG | 0.376744 | 7_2:+22753814 | None:intergenic |
| CATGCCAATTCAAATGGTCT+TGG | 0.391639 | 7_2:-22752209 | Msa1053320:CDS |
| TCTTCCAAGACCATTTGAAT+TGG | 0.395041 | 7_2:+22752205 | None:intergenic |
| ATGCTTCATCTTCAAGGAAG+TGG | 0.440600 | 7_2:+22753820 | None:intergenic |
| GGGTTTCATGCCAATTCAAA+TGG | 0.458206 | 7_2:-22752215 | Msa1053320:CDS |
| CAGTTCGATCACAACTTGAA+TGG | 0.477280 | 7_2:-22752304 | Msa1053320:CDS |
| GCTTGCAATGGCAGATGGAA+TGG | 0.514699 | 7_2:-22752236 | Msa1053320:CDS |
| ATAGCAGTTGAAAGAGAGTC+CGG | 0.521949 | 7_2:-22752166 | Msa1053320:CDS |
| CTTGCAATGGCAGATGGAAT+GGG | 0.535718 | 7_2:-22752235 | Msa1053320:CDS |
| TGAAAGAGAGTCCGGTAAAG+TGG | 0.542820 | 7_2:-22752158 | Msa1053320:CDS |
| ATGATGCTTGCAATGGCAGA+TGG | 0.563021 | 7_2:-22752241 | Msa1053320:CDS |
| TTCAAGGAAGTGGACAATTG+TGG | 0.596143 | 7_2:+22753830 | None:intergenic |
| TAAGCAAATGATGCTTGCAA+TGG | 0.606338 | 7_2:-22752248 | Msa1053320:CDS |
| CGATCACAACTTGAATGGCA+CGG | 0.606932 | 7_2:-22752299 | Msa1053320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTACTAAATATAATATATTT+TGG | - | chr7_2:22752613-22752632 | Msa1053320:intron | 10.0% |
| !!! | TTTAAATATTTTTCTATTTG+AGG | - | chr7_2:22753163-22753182 | Msa1053320:intron | 10.0% |
| !!! | GTACTAAATATAATATATTT+TGG | - | chr7_2:22752613-22752632 | Msa1053320:intron | 10.0% |
| !!! | TTTAAATATTTTTCTATTTG+AGG | - | chr7_2:22753163-22753182 | Msa1053320:intron | 10.0% |
| !!! | AAAATATTTTAGCAAAACTT+GGG | + | chr7_2:22752570-22752589 | None:intergenic | 15.0% |
| !!! | AAAATATTTTAGCAAAACTT+GGG | + | chr7_2:22752570-22752589 | None:intergenic | 15.0% |
| !! | ATTAGTAGTGTTTATATAGT+GGG | - | chr7_2:22752402-22752421 | Msa1053320:intron | 20.0% |
| !!! | AAATATTTTAGCAAAACTTG+GGG | + | chr7_2:22752569-22752588 | None:intergenic | 20.0% |
| !!! | CAAAATATTTTAGCAAAACT+TGG | + | chr7_2:22752571-22752590 | None:intergenic | 20.0% |
| !!! | CAAGTTTTGCTAAAATATTT+TGG | - | chr7_2:22752569-22752588 | Msa1053320:intron | 20.0% |
| !! | TAAGAACACTCTTAAAAATA+TGG | + | chr7_2:22752966-22752985 | None:intergenic | 20.0% |
| !! | GTAATAGTATCATATTAAAG+TGG | - | chr7_2:22753304-22753323 | Msa1053320:intron | 20.0% |
| !! | ATTAGTAGTGTTTATATAGT+GGG | - | chr7_2:22752402-22752421 | Msa1053320:intron | 20.0% |
| !!! | AAATATTTTAGCAAAACTTG+GGG | + | chr7_2:22752569-22752588 | None:intergenic | 20.0% |
| !!! | CAAAATATTTTAGCAAAACT+TGG | + | chr7_2:22752571-22752590 | None:intergenic | 20.0% |
| !!! | CAAGTTTTGCTAAAATATTT+TGG | - | chr7_2:22752569-22752588 | Msa1053320:intron | 20.0% |
| !! | TAAGAACACTCTTAAAAATA+TGG | + | chr7_2:22752966-22752985 | None:intergenic | 20.0% |
| !! | GTAATAGTATCATATTAAAG+TGG | - | chr7_2:22753304-22753323 | Msa1053320:intron | 20.0% |
| !! | ATGAGTGTAGAAATTTTAGA+TGG | - | chr7_2:22752150-22752169 | Msa1053320:CDS | 25.0% |
| ! | TATTAAATGCTTCATCTTCA+AGG | + | chr7_2:22752194-22752213 | None:intergenic | 25.0% |
| ! | TAAACACAAATTCTCATGTT+GGG | - | chr7_2:22752319-22752338 | Msa1053320:intron | 25.0% |
| ! | CATTAGTAGTGTTTATATAG+TGG | - | chr7_2:22752401-22752420 | Msa1053320:intron | 25.0% |
| ! | TTAGTAGTGTTTATATAGTG+GGG | - | chr7_2:22752403-22752422 | Msa1053320:intron | 25.0% |
| ! | CAAGTAATATGAGAAACTTT+GGG | + | chr7_2:22752712-22752731 | None:intergenic | 25.0% |
| ! | ACAAGTAATATGAGAAACTT+TGG | + | chr7_2:22752713-22752732 | None:intergenic | 25.0% |
| ! | ACTAATAAGTGAGAAACTTT+GGG | + | chr7_2:22752737-22752756 | None:intergenic | 25.0% |
| ! | AACTAATAAGTGAGAAACTT+TGG | + | chr7_2:22752738-22752757 | None:intergenic | 25.0% |
| !! | CAACTCAATGAAATTCTTTT+CGG | + | chr7_2:22752808-22752827 | None:intergenic | 25.0% |
| !! | AAAGAATTTCATTGAGTTGT+CGG | - | chr7_2:22752809-22752828 | Msa1053320:intron | 25.0% |
| !! | TTTTTCTATTTGAGGAGAAA+TGG | - | chr7_2:22753171-22753190 | Msa1053320:intron | 25.0% |
| ! | GATACTATTACCATTCTATA+TGG | + | chr7_2:22753295-22753314 | None:intergenic | 25.0% |
| ! | CTTCGGTAGATAATAAAATT+TGG | - | chr7_2:22753535-22753554 | Msa1053320:intron | 25.0% |
| !! | ATGAGTGTAGAAATTTTAGA+TGG | - | chr7_2:22752150-22752169 | Msa1053320:CDS | 25.0% |
| ! | TATTAAATGCTTCATCTTCA+AGG | + | chr7_2:22752194-22752213 | None:intergenic | 25.0% |
| ! | TAAACACAAATTCTCATGTT+GGG | - | chr7_2:22752319-22752338 | Msa1053320:intron | 25.0% |
| ! | CATTAGTAGTGTTTATATAG+TGG | - | chr7_2:22752401-22752420 | Msa1053320:intron | 25.0% |
| ! | TTAGTAGTGTTTATATAGTG+GGG | - | chr7_2:22752403-22752422 | Msa1053320:intron | 25.0% |
| ! | CAAGTAATATGAGAAACTTT+GGG | + | chr7_2:22752712-22752731 | None:intergenic | 25.0% |
| ! | ACAAGTAATATGAGAAACTT+TGG | + | chr7_2:22752713-22752732 | None:intergenic | 25.0% |
| ! | ACTAATAAGTGAGAAACTTT+GGG | + | chr7_2:22752737-22752756 | None:intergenic | 25.0% |
| ! | AACTAATAAGTGAGAAACTT+TGG | + | chr7_2:22752738-22752757 | None:intergenic | 25.0% |
| !! | CAACTCAATGAAATTCTTTT+CGG | + | chr7_2:22752808-22752827 | None:intergenic | 25.0% |
| !! | AAAGAATTTCATTGAGTTGT+CGG | - | chr7_2:22752809-22752828 | Msa1053320:intron | 25.0% |
| !! | TTTTTCTATTTGAGGAGAAA+TGG | - | chr7_2:22753171-22753190 | Msa1053320:intron | 25.0% |
| ! | GATACTATTACCATTCTATA+TGG | + | chr7_2:22753295-22753314 | None:intergenic | 25.0% |
| ! | CTTCGGTAGATAATAAAATT+TGG | - | chr7_2:22753535-22753554 | Msa1053320:intron | 25.0% |
| TTAATAGCTCAGTTGGAAAT+CGG | - | chr7_2:22752208-22752227 | Msa1053320:CDS | 30.0% | |
| CTAAACACAAATTCTCATGT+TGG | - | chr7_2:22752318-22752337 | Msa1053320:intron | 30.0% | |
| GTTGTGTGAATTGAAAAAAG+TGG | - | chr7_2:22752352-22752371 | Msa1053320:intron | 30.0% | |
| TAGTAGTGTTTATATAGTGG+GGG | - | chr7_2:22752404-22752423 | Msa1053320:intron | 30.0% | |
| ! | AAGAATTTCATTGAGTTGTC+GGG | - | chr7_2:22752810-22752829 | Msa1053320:intron | 30.0% |
| !! | AGAAACTTGTTAACACAAGT+CGG | + | chr7_2:22752859-22752878 | None:intergenic | 30.0% |
| ATTAAACAGAAAAGGGACTA+TGG | + | chr7_2:22752992-22753011 | None:intergenic | 30.0% | |
| AAGGGACATTAAACAGAAAA+GGG | + | chr7_2:22752999-22753018 | None:intergenic | 30.0% | |
| ! | TTTTCTGTTTAATGTCCCTT+CGG | - | chr7_2:22752999-22753018 | Msa1053320:intron | 30.0% |
| AGGGACATATATTATCGAAA+GGG | + | chr7_2:22753052-22753071 | None:intergenic | 30.0% | |
| AAGGGACATATATTATCGAA+AGG | + | chr7_2:22753053-22753072 | None:intergenic | 30.0% | |
| TTCGATAATATATGTCCCTT+CGG | - | chr7_2:22753053-22753072 | Msa1053320:intron | 30.0% | |
| ATAGTACTCTTTATTCCGAA+GGG | + | chr7_2:22753071-22753090 | None:intergenic | 30.0% | |
| AATAGTACTCTTTATTCCGA+AGG | + | chr7_2:22753072-22753091 | None:intergenic | 30.0% | |
| GGGACATTATTATTACGAAA+GGG | + | chr7_2:22753106-22753125 | None:intergenic | 30.0% | |
| AAGATCATTCATAATTCCGA+CGG | + | chr7_2:22753127-22753146 | None:intergenic | 30.0% | |
| GTAGTACCATATTGAAAGTT+TGG | - | chr7_2:22753218-22753237 | Msa1053320:intron | 30.0% | |
| AGTTCTCCAAACTTTCAATA+TGG | + | chr7_2:22753227-22753246 | None:intergenic | 30.0% | |
| GGAGAACTTAAAAGTTAGAA+TGG | - | chr7_2:22753239-22753258 | Msa1053320:intron | 30.0% | |
| GAACTTAAAAGTTAGAATGG+TGG | - | chr7_2:22753242-22753261 | Msa1053320:intron | 30.0% | |
| GAGAATTACACCTTCAAATA+TGG | + | chr7_2:22753357-22753376 | None:intergenic | 30.0% | |
| TCCAAAAACAACAATGTTGA+AGG | - | chr7_2:22753583-22753602 | Msa1053320:intron | 30.0% | |
| !!! | TCCTTCAACATTGTTGTTTT+TGG | + | chr7_2:22753587-22753606 | None:intergenic | 30.0% |
| TTAATAGCTCAGTTGGAAAT+CGG | - | chr7_2:22752208-22752227 | Msa1053320:CDS | 30.0% | |
| CTAAACACAAATTCTCATGT+TGG | - | chr7_2:22752318-22752337 | Msa1053320:intron | 30.0% | |
| GTTGTGTGAATTGAAAAAAG+TGG | - | chr7_2:22752352-22752371 | Msa1053320:intron | 30.0% | |
| TAGTAGTGTTTATATAGTGG+GGG | - | chr7_2:22752404-22752423 | Msa1053320:intron | 30.0% | |
| ! | AAGAATTTCATTGAGTTGTC+GGG | - | chr7_2:22752810-22752829 | Msa1053320:intron | 30.0% |
| !! | AGAAACTTGTTAACACAAGT+CGG | + | chr7_2:22752859-22752878 | None:intergenic | 30.0% |
| ATTAAACAGAAAAGGGACTA+TGG | + | chr7_2:22752992-22753011 | None:intergenic | 30.0% | |
| AAGGGACATTAAACAGAAAA+GGG | + | chr7_2:22752999-22753018 | None:intergenic | 30.0% | |
| ! | TTTTCTGTTTAATGTCCCTT+CGG | - | chr7_2:22752999-22753018 | Msa1053320:intron | 30.0% |
| AGGGACATATATTATCGAAA+GGG | + | chr7_2:22753052-22753071 | None:intergenic | 30.0% | |
| AAGGGACATATATTATCGAA+AGG | + | chr7_2:22753053-22753072 | None:intergenic | 30.0% | |
| TTCGATAATATATGTCCCTT+CGG | - | chr7_2:22753053-22753072 | Msa1053320:intron | 30.0% | |
| ATAGTACTCTTTATTCCGAA+GGG | + | chr7_2:22753071-22753090 | None:intergenic | 30.0% | |
| AATAGTACTCTTTATTCCGA+AGG | + | chr7_2:22753072-22753091 | None:intergenic | 30.0% | |
| GGGACATTATTATTACGAAA+GGG | + | chr7_2:22753106-22753125 | None:intergenic | 30.0% | |
| AAGATCATTCATAATTCCGA+CGG | + | chr7_2:22753127-22753146 | None:intergenic | 30.0% | |
| GTAGTACCATATTGAAAGTT+TGG | - | chr7_2:22753218-22753237 | Msa1053320:intron | 30.0% | |
| AGTTCTCCAAACTTTCAATA+TGG | + | chr7_2:22753227-22753246 | None:intergenic | 30.0% | |
| GGAGAACTTAAAAGTTAGAA+TGG | - | chr7_2:22753239-22753258 | Msa1053320:intron | 30.0% | |
| GAACTTAAAAGTTAGAATGG+TGG | - | chr7_2:22753242-22753261 | Msa1053320:intron | 30.0% | |
| GAGAATTACACCTTCAAATA+TGG | + | chr7_2:22753357-22753376 | None:intergenic | 30.0% | |
| TCCAAAAACAACAATGTTGA+AGG | - | chr7_2:22753583-22753602 | Msa1053320:intron | 30.0% | |
| !!! | TCCTTCAACATTGTTGTTTT+TGG | + | chr7_2:22753587-22753606 | None:intergenic | 30.0% |
| ! | GAAGCATTTAATAGCTCAGT+TGG | - | chr7_2:22752201-22752220 | Msa1053320:CDS | 35.0% |
| TCCTATGATGAGATGTTTGT+TGG | - | chr7_2:22752267-22752286 | Msa1053320:CDS | 35.0% | |
| TCCAACAAACATCTCATCAT+AGG | + | chr7_2:22752271-22752290 | None:intergenic | 35.0% | |
| TATGTACCCCCATTAATTAG+AGG | + | chr7_2:22752434-22752453 | None:intergenic | 35.0% | |
| !! | ATGAAATTCTTTTCGGTGTG+TGG | + | chr7_2:22752801-22752820 | None:intergenic | 35.0% |
| GAAGGGACATTAAACAGAAA+AGG | + | chr7_2:22753000-22753019 | None:intergenic | 35.0% | |
| AGACCATTCTTAATTCCGAA+GGG | + | chr7_2:22753017-22753036 | None:intergenic | 35.0% | |
| AAGACCATTCTTAATTCCGA+AGG | + | chr7_2:22753018-22753037 | None:intergenic | 35.0% | |
| CGGGACATTATTATTACGAA+AGG | + | chr7_2:22753107-22753126 | None:intergenic | 35.0% | |
| TCGTAATAATAATGTCCCGT+CGG | - | chr7_2:22753108-22753127 | Msa1053320:intron | 35.0% | |
| AGATCATTCATAATTCCGAC+GGG | + | chr7_2:22753126-22753145 | None:intergenic | 35.0% | |
| TTCTATTTGAGGAGAAATGG+TGG | - | chr7_2:22753174-22753193 | Msa1053320:intron | 35.0% | |
| GTGGTTTCAGTATTAAAGAG+TGG | - | chr7_2:22753323-22753342 | Msa1053320:intron | 35.0% | |
| GGTCTTAGTACCATATTTGA+AGG | - | chr7_2:22753344-22753363 | Msa1053320:intron | 35.0% | |
| ! | TTGAAGGTGTAATTCTCGAA+CGG | - | chr7_2:22753360-22753379 | Msa1053320:intron | 35.0% |
| ! | TAGTCTACCTTGCACAATTT+TGG | - | chr7_2:22753454-22753473 | Msa1053320:intron | 35.0% |
| ! | AGTCTACCTTGCACAATTTT+GGG | - | chr7_2:22753455-22753474 | Msa1053320:intron | 35.0% |
| ACTCAACCTAGTAACAACTT+CGG | - | chr7_2:22753518-22753537 | Msa1053320:intron | 35.0% | |
| TATCTACCGAAGTTGTTACT+AGG | + | chr7_2:22753527-22753546 | None:intergenic | 35.0% | |
| !!! | AGGGTTTTTGAAACACACTT+TGG | - | chr7_2:22753620-22753639 | Msa1053320:intron | 35.0% |
| TAAGCAAATGATGCTTGCAA+TGG | - | chr7_2:22753757-22753776 | Msa1053320:intron | 35.0% | |
| TCTTCCAAGACCATTTGAAT+TGG | + | chr7_2:22753803-22753822 | None:intergenic | 35.0% | |
| !!! | CTCTTTCAACTGCTATTTTG+AGG | + | chr7_2:22753835-22753854 | None:intergenic | 35.0% |
| ! | GAAGCATTTAATAGCTCAGT+TGG | - | chr7_2:22752201-22752220 | Msa1053320:CDS | 35.0% |
| TCCTATGATGAGATGTTTGT+TGG | - | chr7_2:22752267-22752286 | Msa1053320:CDS | 35.0% | |
| TCCAACAAACATCTCATCAT+AGG | + | chr7_2:22752271-22752290 | None:intergenic | 35.0% | |
| TATGTACCCCCATTAATTAG+AGG | + | chr7_2:22752434-22752453 | None:intergenic | 35.0% | |
| !! | ATGAAATTCTTTTCGGTGTG+TGG | + | chr7_2:22752801-22752820 | None:intergenic | 35.0% |
| GAAGGGACATTAAACAGAAA+AGG | + | chr7_2:22753000-22753019 | None:intergenic | 35.0% | |
| AGACCATTCTTAATTCCGAA+GGG | + | chr7_2:22753017-22753036 | None:intergenic | 35.0% | |
| AAGACCATTCTTAATTCCGA+AGG | + | chr7_2:22753018-22753037 | None:intergenic | 35.0% | |
| CGGGACATTATTATTACGAA+AGG | + | chr7_2:22753107-22753126 | None:intergenic | 35.0% | |
| TCGTAATAATAATGTCCCGT+CGG | - | chr7_2:22753108-22753127 | Msa1053320:intron | 35.0% | |
| AGATCATTCATAATTCCGAC+GGG | + | chr7_2:22753126-22753145 | None:intergenic | 35.0% | |
| TTCTATTTGAGGAGAAATGG+TGG | - | chr7_2:22753174-22753193 | Msa1053320:intron | 35.0% | |
| GTGGTTTCAGTATTAAAGAG+TGG | - | chr7_2:22753323-22753342 | Msa1053320:intron | 35.0% | |
| GGTCTTAGTACCATATTTGA+AGG | - | chr7_2:22753344-22753363 | Msa1053320:intron | 35.0% | |
| ! | TTGAAGGTGTAATTCTCGAA+CGG | - | chr7_2:22753360-22753379 | Msa1053320:intron | 35.0% |
| ! | TAGTCTACCTTGCACAATTT+TGG | - | chr7_2:22753454-22753473 | Msa1053320:intron | 35.0% |
| ! | AGTCTACCTTGCACAATTTT+GGG | - | chr7_2:22753455-22753474 | Msa1053320:intron | 35.0% |
| ACTCAACCTAGTAACAACTT+CGG | - | chr7_2:22753518-22753537 | Msa1053320:intron | 35.0% | |
| TATCTACCGAAGTTGTTACT+AGG | + | chr7_2:22753527-22753546 | None:intergenic | 35.0% | |
| !!! | AGGGTTTTTGAAACACACTT+TGG | - | chr7_2:22753620-22753639 | Msa1053320:intron | 35.0% |
| TAAGCAAATGATGCTTGCAA+TGG | - | chr7_2:22753757-22753776 | Msa1053320:intron | 35.0% | |
| TCTTCCAAGACCATTTGAAT+TGG | + | chr7_2:22753803-22753822 | None:intergenic | 35.0% | |
| !!! | CTCTTTCAACTGCTATTTTG+AGG | + | chr7_2:22753835-22753854 | None:intergenic | 35.0% |
| TTCAAGGAAGTGGACAATTG+TGG | + | chr7_2:22752178-22752197 | None:intergenic | 40.0% | |
| ATGCTTCATCTTCAAGGAAG+TGG | + | chr7_2:22752188-22752207 | None:intergenic | 40.0% | |
| ! | GATGTTTGTTGGAACATGTG+TGG | - | chr7_2:22752278-22752297 | Msa1053320:CDS | 40.0% |
| AAAAAGTGGAAGTCCCACAT+CGG | - | chr7_2:22752366-22752385 | Msa1053320:intron | 40.0% | |
| GGGGTGTACCTCTAATTAAT+GGG | - | chr7_2:22752423-22752442 | Msa1053320:intron | 40.0% | |
| GGGTGTACCTCTAATTAATG+GGG | - | chr7_2:22752424-22752443 | Msa1053320:intron | 40.0% | |
| GGTGTACCTCTAATTAATGG+GGG | - | chr7_2:22752425-22752444 | Msa1053320:intron | 40.0% | |
| ! | ACTTGTTAACACAAGTCGGA+GGG | + | chr7_2:22752855-22752874 | None:intergenic | 40.0% |
| !! | AACTTGTTAACACAAGTCGG+AGG | + | chr7_2:22752856-22752875 | None:intergenic | 40.0% |
| ! | CGCTCTATTTGAAACCGAAA+GGG | + | chr7_2:22752903-22752922 | None:intergenic | 40.0% |
| CCTTTCGGTTTCAAATAGAG+CGG | - | chr7_2:22752901-22752920 | Msa1053320:intron | 40.0% | |
| TGTCCCTTCGGAATTAAGAA+TGG | - | chr7_2:22753011-22753030 | Msa1053320:intron | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr7_2:22753193-22753212 | Msa1053320:intron | 40.0% | |
| GTACTACGACCACTCAAATA+TGG | + | chr7_2:22753205-22753224 | None:intergenic | 40.0% | |
| GTGGAAACACCATATTTGAG+TGG | - | chr7_2:22753261-22753280 | Msa1053320:intron | 40.0% | |
| GTGCTAAGACCACTCAAATA+TGG | + | chr7_2:22753273-22753292 | None:intergenic | 40.0% | |
| GGTCTTAGCACCATATAGAA+TGG | - | chr7_2:22753282-22753301 | Msa1053320:intron | 40.0% | |
| TTAACCGCACAGTTGTAGTT+GGG | - | chr7_2:22753401-22753420 | Msa1053320:intron | 40.0% | |
| !!! | TAGTTGGGCTTGTTTTATCC+TGG | - | chr7_2:22753416-22753435 | Msa1053320:intron | 40.0% |
| AAACACGAGCAAGCTCATTT+GGG | + | chr7_2:22753664-22753683 | None:intergenic | 40.0% | |
| TAAACACGAGCAAGCTCATT+TGG | + | chr7_2:22753665-22753684 | None:intergenic | 40.0% | |
| CAGTTCGATCACAACTTGAA+TGG | - | chr7_2:22753701-22753720 | Msa1053320:intron | 40.0% | |
| GGGTTTCATGCCAATTCAAA+TGG | - | chr7_2:22753790-22753809 | Msa1053320:intron | 40.0% | |
| CATGCCAATTCAAATGGTCT+TGG | - | chr7_2:22753796-22753815 | Msa1053320:intron | 40.0% | |
| ATAGCAGTTGAAAGAGAGTC+CGG | - | chr7_2:22753839-22753858 | Msa1053320:CDS | 40.0% | |
| TTCAAGGAAGTGGACAATTG+TGG | + | chr7_2:22752178-22752197 | None:intergenic | 40.0% | |
| ATGCTTCATCTTCAAGGAAG+TGG | + | chr7_2:22752188-22752207 | None:intergenic | 40.0% | |
| ! | GATGTTTGTTGGAACATGTG+TGG | - | chr7_2:22752278-22752297 | Msa1053320:CDS | 40.0% |
| AAAAAGTGGAAGTCCCACAT+CGG | - | chr7_2:22752366-22752385 | Msa1053320:intron | 40.0% | |
| GGGGTGTACCTCTAATTAAT+GGG | - | chr7_2:22752423-22752442 | Msa1053320:intron | 40.0% | |
| GGGTGTACCTCTAATTAATG+GGG | - | chr7_2:22752424-22752443 | Msa1053320:intron | 40.0% | |
| GGTGTACCTCTAATTAATGG+GGG | - | chr7_2:22752425-22752444 | Msa1053320:intron | 40.0% | |
| ! | ACTTGTTAACACAAGTCGGA+GGG | + | chr7_2:22752855-22752874 | None:intergenic | 40.0% |
| !! | AACTTGTTAACACAAGTCGG+AGG | + | chr7_2:22752856-22752875 | None:intergenic | 40.0% |
| ! | CGCTCTATTTGAAACCGAAA+GGG | + | chr7_2:22752903-22752922 | None:intergenic | 40.0% |
| CCTTTCGGTTTCAAATAGAG+CGG | - | chr7_2:22752901-22752920 | Msa1053320:intron | 40.0% | |
| TGTCCCTTCGGAATTAAGAA+TGG | - | chr7_2:22753011-22753030 | Msa1053320:intron | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr7_2:22753193-22753212 | Msa1053320:intron | 40.0% | |
| GTACTACGACCACTCAAATA+TGG | + | chr7_2:22753205-22753224 | None:intergenic | 40.0% | |
| GTGGAAACACCATATTTGAG+TGG | - | chr7_2:22753261-22753280 | Msa1053320:intron | 40.0% | |
| GTGCTAAGACCACTCAAATA+TGG | + | chr7_2:22753273-22753292 | None:intergenic | 40.0% | |
| GGTCTTAGCACCATATAGAA+TGG | - | chr7_2:22753282-22753301 | Msa1053320:intron | 40.0% | |
| TTAACCGCACAGTTGTAGTT+GGG | - | chr7_2:22753401-22753420 | Msa1053320:intron | 40.0% | |
| !!! | TAGTTGGGCTTGTTTTATCC+TGG | - | chr7_2:22753416-22753435 | Msa1053320:intron | 40.0% |
| AAACACGAGCAAGCTCATTT+GGG | + | chr7_2:22753664-22753683 | None:intergenic | 40.0% | |
| TAAACACGAGCAAGCTCATT+TGG | + | chr7_2:22753665-22753684 | None:intergenic | 40.0% | |
| CAGTTCGATCACAACTTGAA+TGG | - | chr7_2:22753701-22753720 | Msa1053320:intron | 40.0% | |
| GGGTTTCATGCCAATTCAAA+TGG | - | chr7_2:22753790-22753809 | Msa1053320:intron | 40.0% | |
| CATGCCAATTCAAATGGTCT+TGG | - | chr7_2:22753796-22753815 | Msa1053320:intron | 40.0% | |
| ATAGCAGTTGAAAGAGAGTC+CGG | - | chr7_2:22753839-22753858 | Msa1053320:CDS | 40.0% | |
| TGCCTCGACACAAATAACGA+TGG | - | chr7_2:22752237-22752256 | Msa1053320:CDS | 45.0% | |
| GACCATCGTTATTTGTGTCG+AGG | + | chr7_2:22752242-22752261 | None:intergenic | 45.0% | |
| ! | GGGGGTGTACCTCTAATTAA+TGG | - | chr7_2:22752422-22752441 | Msa1053320:intron | 45.0% |
| CTACTCCTTTCTGTCCCTTT+CGG | - | chr7_2:22752886-22752905 | Msa1053320:intron | 45.0% | |
| TGAAACCGAAAGGGACAGAA+AGG | + | chr7_2:22752894-22752913 | None:intergenic | 45.0% | |
| ! | CCGCTCTATTTGAAACCGAA+AGG | + | chr7_2:22752904-22752923 | None:intergenic | 45.0% |
| TTGATCGAAGCCACTCGATA+CGG | + | chr7_2:22752934-22752953 | None:intergenic | 45.0% | |
| GTTAACCGCACAGTTGTAGT+TGG | - | chr7_2:22753400-22753419 | Msa1053320:intron | 45.0% | |
| !!! | TTGGGCTTGTTTTATCCTGG+AGG | - | chr7_2:22753419-22753438 | Msa1053320:intron | 45.0% |
| GCACTACCCAAAATTGTGCA+AGG | + | chr7_2:22753464-22753483 | None:intergenic | 45.0% | |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr7_2:22753486-22753505 | None:intergenic | 45.0% |
| ACGTCTTAAAGAGAGCGACA+TGG | - | chr7_2:22753490-22753509 | Msa1053320:intron | 45.0% | |
| CGATCACAACTTGAATGGCA+CGG | - | chr7_2:22753706-22753725 | Msa1053320:intron | 45.0% | |
| ATGATGCTTGCAATGGCAGA+TGG | - | chr7_2:22753764-22753783 | Msa1053320:intron | 45.0% | |
| CTTGCAATGGCAGATGGAAT+GGG | - | chr7_2:22753770-22753789 | Msa1053320:intron | 45.0% | |
| TGAAAGAGAGTCCGGTAAAG+TGG | - | chr7_2:22753847-22753866 | Msa1053320:CDS | 45.0% | |
| TGCCTCGACACAAATAACGA+TGG | - | chr7_2:22752237-22752256 | Msa1053320:CDS | 45.0% | |
| GACCATCGTTATTTGTGTCG+AGG | + | chr7_2:22752242-22752261 | None:intergenic | 45.0% | |
| ! | GGGGGTGTACCTCTAATTAA+TGG | - | chr7_2:22752422-22752441 | Msa1053320:intron | 45.0% |
| CTACTCCTTTCTGTCCCTTT+CGG | - | chr7_2:22752886-22752905 | Msa1053320:intron | 45.0% | |
| TGAAACCGAAAGGGACAGAA+AGG | + | chr7_2:22752894-22752913 | None:intergenic | 45.0% | |
| ! | CCGCTCTATTTGAAACCGAA+AGG | + | chr7_2:22752904-22752923 | None:intergenic | 45.0% |
| TTGATCGAAGCCACTCGATA+CGG | + | chr7_2:22752934-22752953 | None:intergenic | 45.0% | |
| GTTAACCGCACAGTTGTAGT+TGG | - | chr7_2:22753400-22753419 | Msa1053320:intron | 45.0% | |
| !!! | TTGGGCTTGTTTTATCCTGG+AGG | - | chr7_2:22753419-22753438 | Msa1053320:intron | 45.0% |
| GCACTACCCAAAATTGTGCA+AGG | + | chr7_2:22753464-22753483 | None:intergenic | 45.0% | |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr7_2:22753486-22753505 | None:intergenic | 45.0% |
| ACGTCTTAAAGAGAGCGACA+TGG | - | chr7_2:22753490-22753509 | Msa1053320:intron | 45.0% | |
| CGATCACAACTTGAATGGCA+CGG | - | chr7_2:22753706-22753725 | Msa1053320:intron | 45.0% | |
| ATGATGCTTGCAATGGCAGA+TGG | - | chr7_2:22753764-22753783 | Msa1053320:intron | 45.0% | |
| CTTGCAATGGCAGATGGAAT+GGG | - | chr7_2:22753770-22753789 | Msa1053320:intron | 45.0% | |
| TGAAAGAGAGTCCGGTAAAG+TGG | - | chr7_2:22753847-22753866 | Msa1053320:CDS | 45.0% | |
| !!! | TTGATATATATTTTATTATT+TGG | - | chr7_2:22752476-22752495 | Msa1053320:intron | 5.0% |
| !!! | TTGATATATATTTTATTATT+TGG | - | chr7_2:22752476-22752495 | Msa1053320:intron | 5.0% |
| GTGTGTGTTCCATCCGATGT+GGG | + | chr7_2:22752382-22752401 | None:intergenic | 50.0% | |
| TGTGTGTGTTCCATCCGATG+TGG | + | chr7_2:22752383-22752402 | None:intergenic | 50.0% | |
| CAAGCCCAACTACAACTGTG+CGG | + | chr7_2:22753408-22753427 | None:intergenic | 50.0% | |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr7_2:22753422-22753441 | Msa1053320:intron | 50.0% |
| TGAAGGAGCTCAAGTGCTTG+AGG | - | chr7_2:22753600-22753619 | Msa1053320:intron | 50.0% | |
| GAAGGAGCTCAAGTGCTTGA+GGG | - | chr7_2:22753601-22753620 | Msa1053320:intron | 50.0% | |
| CTTGAATGGCACGGTTGATC+TGG | - | chr7_2:22753715-22753734 | Msa1053320:intron | 50.0% | |
| GCTTGCAATGGCAGATGGAA+TGG | - | chr7_2:22753769-22753788 | Msa1053320:intron | 50.0% | |
| GTGTGTGTTCCATCCGATGT+GGG | + | chr7_2:22752382-22752401 | None:intergenic | 50.0% | |
| TGTGTGTGTTCCATCCGATG+TGG | + | chr7_2:22752383-22752402 | None:intergenic | 50.0% | |
| CAAGCCCAACTACAACTGTG+CGG | + | chr7_2:22753408-22753427 | None:intergenic | 50.0% | |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr7_2:22753422-22753441 | Msa1053320:intron | 50.0% |
| TGAAGGAGCTCAAGTGCTTG+AGG | - | chr7_2:22753600-22753619 | Msa1053320:intron | 50.0% | |
| GAAGGAGCTCAAGTGCTTGA+GGG | - | chr7_2:22753601-22753620 | Msa1053320:intron | 50.0% | |
| CTTGAATGGCACGGTTGATC+TGG | - | chr7_2:22753715-22753734 | Msa1053320:intron | 50.0% | |
| GCTTGCAATGGCAGATGGAA+TGG | - | chr7_2:22753769-22753788 | Msa1053320:intron | 50.0% | |
| AGTGGAAGTCCCACATCGGA+TGG | - | chr7_2:22752370-22752389 | Msa1053320:intron | 55.0% | |
| CGGTTACGTACCGTATCGAG+TGG | - | chr7_2:22752921-22752940 | Msa1053320:intron | 55.0% | |
| AGTGGAAGTCCCACATCGGA+TGG | - | chr7_2:22752370-22752389 | Msa1053320:intron | 55.0% | |
| CGGTTACGTACCGTATCGAG+TGG | - | chr7_2:22752921-22752940 | Msa1053320:intron | 55.0% | |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | - | chr7_2:22753427-22753446 | Msa1053320:intron | 60.0% |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | - | chr7_2:22753427-22753446 | Msa1053320:intron | 60.0% |
| CTATCAACCACGCCGCCTCC+AGG | + | chr7_2:22753437-22753456 | None:intergenic | 65.0% | |
| CTATCAACCACGCCGCCTCC+AGG | + | chr7_2:22753437-22753456 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 22752150 | 22753877 | 22752150 | ID=Msa1053320;Name=Msa1053320 |
| chr7_2 | mRNA | 22752150 | 22753877 | 22752150 | ID=Msa1053320-mRNA-1;Parent=Msa1053320;Name=Msa1053320-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|0|0.5|2|0|80 |
| chr7_2 | exon | 22753809 | 22753877 | 22753809 | ID=Msa1053320-mRNA-1:exon:5158;Parent=Msa1053320-mRNA-1 |
| chr7_2 | exon | 22752150 | 22752323 | 22752150 | ID=Msa1053320-mRNA-1:exon:5157;Parent=Msa1053320-mRNA-1 |
| chr7_2 | CDS | 22753809 | 22753877 | 22753809 | ID=Msa1053320-mRNA-1:cds;Parent=Msa1053320-mRNA-1 |
| chr7_2 | CDS | 22752150 | 22752323 | 22752150 | ID=Msa1053320-mRNA-1:cds;Parent=Msa1053320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
