Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060530 | XP_013448823.1 | 95.763 | 118 | 5 | 0 | 1 | 118 | 1 | 118 | 8.73e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060530 | sp|P81748|MIFH_TRITR | 36.607 | 112 | 70 | 1 | 1 | 112 | 1 | 111 | 6.29e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060530 | A0A072UAN8 | 95.763 | 118 | 5 | 0 | 1 | 118 | 1 | 118 | 4.17e-76 | 230 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641900 | Msa1060530 | 0.808574 | 2.896545e-50 | -8.615850e-47 |
| Msa0818010 | Msa1060530 | 0.838958 | 2.110731e-57 | -8.615850e-47 |
| Msa0452410 | Msa1060530 | 0.813346 | 2.681890e-51 | -8.615850e-47 |
| Msa1020720 | Msa1060530 | 0.801790 | 7.624005e-49 | -8.615850e-47 |
| Msa1060530 | Msa1139410 | 0.805034 | 1.621663e-49 | -8.615850e-47 |
| Msa0584130 | Msa1060530 | 0.821302 | 4.340734e-53 | -8.615850e-47 |
| Msa0912500 | Msa1060530 | 0.807216 | 5.632760e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060530 | MtrunA17_Chr7g0238011 | 95.763 | 118 | 5 | 0 | 1 | 118 | 1 | 118 | 8.03e-80 | 230 |
| Msa1060530 | MtrunA17_Chr4g0005161 | 63.393 | 112 | 41 | 0 | 1 | 112 | 1 | 112 | 1.16e-48 | 151 |
| Msa1060530 | MtrunA17_Chr4g0071771 | 50.893 | 112 | 55 | 0 | 1 | 112 | 1 | 112 | 2.72e-34 | 114 |
| Msa1060530 | MtrunA17_Chr4g0071761 | 48.214 | 112 | 58 | 0 | 1 | 112 | 1 | 112 | 1.24e-31 | 108 |
| Msa1060530 | MtrunA17_Chr4g0005151 | 45.098 | 102 | 56 | 0 | 1 | 102 | 1 | 102 | 2.64e-30 | 104 |
| Msa1060530 | MtrunA17_Chr7g0243451 | 42.157 | 102 | 59 | 0 | 1 | 102 | 1 | 102 | 9.35e-29 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060530 | AT5G01650.1 | 60.000 | 115 | 46 | 0 | 1 | 115 | 1 | 115 | 2.96e-47 | 148 |
| Msa1060530 | AT5G01650.4 | 61.682 | 107 | 41 | 0 | 1 | 107 | 1 | 107 | 1.98e-45 | 143 |
| Msa1060530 | AT5G01650.2 | 60.748 | 107 | 42 | 0 | 1 | 107 | 1 | 107 | 3.64e-44 | 140 |
| Msa1060530 | AT5G01650.3 | 60.748 | 107 | 42 | 0 | 1 | 107 | 1 | 107 | 3.64e-44 | 140 |
| Msa1060530 | AT5G57170.1 | 46.429 | 112 | 60 | 0 | 1 | 112 | 1 | 112 | 1.17e-28 | 100 |
| Msa1060530 | AT5G57170.2 | 48.039 | 102 | 53 | 0 | 1 | 102 | 1 | 102 | 5.12e-28 | 99.4 |
| Msa1060530 | AT3G51660.1 | 40.777 | 103 | 61 | 0 | 1 | 103 | 1 | 103 | 9.96e-25 | 90.9 |
Find 29 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGTGTCTTGTTCAAATC+TGG | 0.252518 | 7_2:+48929168 | None:intergenic |
| AGAGTTGAGTTGAGAGAGTA+TGG | 0.258161 | 7_2:+48930209 | None:intergenic |
| TCAACAAACGTTAGCTTTGA+TGG | 0.285904 | 7_2:-48930246 | Msa1060530:CDS |
| CTCTACTATTGCCAACATCT+TGG | 0.370418 | 7_2:-48930190 | Msa1060530:CDS |
| GGCAATAATTGTGGACTGAA+TGG | 0.374959 | 7_2:-48928966 | Msa1060530:CDS |
| GGATCAATACCAATATGTTT+TGG | 0.376407 | 7_2:-48929246 | Msa1060530:CDS |
| TCAGTTTCACCAAAACATAT+TGG | 0.384156 | 7_2:+48929237 | None:intergenic |
| AGTTCTTCACACCATGTTGT+TGG | 0.387389 | 7_2:-48929130 | Msa1060530:CDS |
| GCAATAATTGTGGACTGAAT+GGG | 0.389949 | 7_2:-48928965 | Msa1060530:CDS |
| TATGGTGAATTTGTGGCTAT+TGG | 0.409602 | 7_2:-48929201 | Msa1060530:CDS |
| AAAATTGTTCATACAGATTG+AGG | 0.419130 | 7_2:+48930162 | None:intergenic |
| TCTACTATTGCCAACATCTT+GGG | 0.427652 | 7_2:-48930189 | Msa1060530:CDS |
| TATGTGACGGTTTCATTAGA+AGG | 0.443254 | 7_2:-48929267 | Msa1060530:CDS |
| AAAGCTAACGTTTGTTGAAA+GGG | 0.447172 | 7_2:+48930251 | None:intergenic |
| ACTGAGGAGCCAGCAGCATA+TGG | 0.461454 | 7_2:-48929219 | Msa1060530:CDS |
| CAAAGCTAACGTTTGTTGAA+AGG | 0.463062 | 7_2:+48930250 | None:intergenic |
| CTTAAAATTCTATGACATTG+AGG | 0.475447 | 7_2:-48929088 | Msa1060530:intron |
| TTTAAGTAGAAACGTGACTT+AGG | 0.476271 | 7_2:+48929105 | None:intergenic |
| AGCAGCATATGGTGAATTTG+TGG | 0.510208 | 7_2:-48929208 | Msa1060530:CDS |
| CAATAATTGTGGACTGAATG+GGG | 0.525325 | 7_2:-48928964 | Msa1060530:CDS |
| ACAAATTCACCATATGCTGC+TGG | 0.542569 | 7_2:+48929210 | None:intergenic |
| CAACATGGTGTGAAGAACTA+AGG | 0.544324 | 7_2:+48929134 | None:intergenic |
| AAATTGTTCATACAGATTGA+GGG | 0.554945 | 7_2:+48930163 | None:intergenic |
| TTGAGGGTAACCCAAGATGT+TGG | 0.592306 | 7_2:+48930179 | None:intergenic |
| TTTGTTGAAAGGGTGAGACA+AGG | 0.631716 | 7_2:+48930261 | None:intergenic |
| AATAATTGTGGACTGAATGG+GGG | 0.638656 | 7_2:-48928963 | Msa1060530:CDS |
| TATTGATTTGCAGTATGTGA+CGG | 0.638900 | 7_2:-48929280 | Msa1060530:intron |
| TGACTTAGGCACCAACAACA+TGG | 0.641699 | 7_2:+48929119 | None:intergenic |
| AATGTGCAGGGCAATAATTG+TGG | 0.684992 | 7_2:-48928975 | Msa1060530:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATTGATTAGTTTTA+TGG | - | chr7_2:48929116-48929135 | Msa1060530:CDS | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | + | chr7_2:48929512-48929531 | None:intergenic | 10.0% |
| !!! | AAAATTATTGATTAGTTTTA+TGG | - | chr7_2:48929116-48929135 | Msa1060530:CDS | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | + | chr7_2:48929512-48929531 | None:intergenic | 10.0% |
| !!! | CAATTTTACTTTTACAAACA+AGG | - | chr7_2:48929206-48929225 | Msa1060530:CDS | 20.0% |
| !!! | AAATATCCCTTTTTTTCTTA+GGG | + | chr7_2:48929282-48929301 | None:intergenic | 20.0% |
| !!! | AAAATATCCCTTTTTTTCTT+AGG | + | chr7_2:48929283-48929302 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAAAGGGATATTT+TGG | - | chr7_2:48929282-48929301 | Msa1060530:intron | 20.0% |
| !!! | TTTTTAATTAATTACACACG+TGG | + | chr7_2:48929372-48929391 | None:intergenic | 20.0% |
| !! | GCTTACTAATATTTGTTTAT+AGG | + | chr7_2:48929653-48929672 | None:intergenic | 20.0% |
| !! | GTATTTATTTATCTAATCCT+TGG | - | chr7_2:48929750-48929769 | Msa1060530:intron | 20.0% |
| !! | CAATTCAAGATTGTAAATTT+GGG | + | chr7_2:48930152-48930171 | None:intergenic | 20.0% |
| !! | ACAATTCAAGATTGTAAATT+TGG | + | chr7_2:48930153-48930172 | None:intergenic | 20.0% |
| !!! | CAATTTTACTTTTACAAACA+AGG | - | chr7_2:48929206-48929225 | Msa1060530:CDS | 20.0% |
| !!! | AAATATCCCTTTTTTTCTTA+GGG | + | chr7_2:48929282-48929301 | None:intergenic | 20.0% |
| !!! | AAAATATCCCTTTTTTTCTT+AGG | + | chr7_2:48929283-48929302 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAAAGGGATATTT+TGG | - | chr7_2:48929282-48929301 | Msa1060530:intron | 20.0% |
| !!! | TTTTTAATTAATTACACACG+TGG | + | chr7_2:48929372-48929391 | None:intergenic | 20.0% |
| !! | GCTTACTAATATTTGTTTAT+AGG | + | chr7_2:48929653-48929672 | None:intergenic | 20.0% |
| !! | GTATTTATTTATCTAATCCT+TGG | - | chr7_2:48929750-48929769 | Msa1060530:intron | 20.0% |
| !! | CAATTCAAGATTGTAAATTT+GGG | + | chr7_2:48930152-48930171 | None:intergenic | 20.0% |
| !! | ACAATTCAAGATTGTAAATT+TGG | + | chr7_2:48930153-48930172 | None:intergenic | 20.0% |
| ! | AAATTGTTCATACAGATTGA+GGG | + | chr7_2:48929052-48929071 | None:intergenic | 25.0% |
| ! | AAAATTGTTCATACAGATTG+AGG | + | chr7_2:48929053-48929072 | None:intergenic | 25.0% |
| !!! | TTAGTTTTATGGTCAAGTTA+TGG | - | chr7_2:48929127-48929146 | Msa1060530:CDS | 25.0% |
| !!! | AATATCCCTTTTTTTCTTAG+GGG | + | chr7_2:48929281-48929300 | None:intergenic | 25.0% |
| ! | AAAAGAGAAACAAAACATAG+GGG | + | chr7_2:48929309-48929328 | None:intergenic | 25.0% |
| ! | CAAAAGAGAAACAAAACATA+GGG | + | chr7_2:48929310-48929329 | None:intergenic | 25.0% |
| ! | TCAAAAGAGAAACAAAACAT+AGG | + | chr7_2:48929311-48929330 | None:intergenic | 25.0% |
| ! | GTTTATAGGCTTAAAAAATC+TGG | + | chr7_2:48929639-48929658 | None:intergenic | 25.0% |
| ! | ACAAATATTAGTAAGCAAAG+AGG | - | chr7_2:48929657-48929676 | Msa1060530:intron | 25.0% |
| ! | CTAAGTTCAATGATATCTTT+CGG | - | chr7_2:48929689-48929708 | Msa1060530:intron | 25.0% |
| ! | CTTAAAATTCTATGACATTG+AGG | - | chr7_2:48930124-48930143 | Msa1060530:intron | 25.0% |
| ! | TTATACTATAAAGTTGAGAG+TGG | + | chr7_2:48930197-48930216 | None:intergenic | 25.0% |
| ! | AAATTGTTCATACAGATTGA+GGG | + | chr7_2:48929052-48929071 | None:intergenic | 25.0% |
| ! | AAAATTGTTCATACAGATTG+AGG | + | chr7_2:48929053-48929072 | None:intergenic | 25.0% |
| !!! | TTAGTTTTATGGTCAAGTTA+TGG | - | chr7_2:48929127-48929146 | Msa1060530:CDS | 25.0% |
| !!! | AATATCCCTTTTTTTCTTAG+GGG | + | chr7_2:48929281-48929300 | None:intergenic | 25.0% |
| ! | AAAAGAGAAACAAAACATAG+GGG | + | chr7_2:48929309-48929328 | None:intergenic | 25.0% |
| ! | CAAAAGAGAAACAAAACATA+GGG | + | chr7_2:48929310-48929329 | None:intergenic | 25.0% |
| ! | TCAAAAGAGAAACAAAACAT+AGG | + | chr7_2:48929311-48929330 | None:intergenic | 25.0% |
| ! | GTTTATAGGCTTAAAAAATC+TGG | + | chr7_2:48929639-48929658 | None:intergenic | 25.0% |
| ! | ACAAATATTAGTAAGCAAAG+AGG | - | chr7_2:48929657-48929676 | Msa1060530:intron | 25.0% |
| ! | CTAAGTTCAATGATATCTTT+CGG | - | chr7_2:48929689-48929708 | Msa1060530:intron | 25.0% |
| ! | CTTAAAATTCTATGACATTG+AGG | - | chr7_2:48930124-48930143 | Msa1060530:intron | 25.0% |
| ! | TTATACTATAAAGTTGAGAG+TGG | + | chr7_2:48930197-48930216 | None:intergenic | 25.0% |
| ! | AAAGCTAACGTTTGTTGAAA+GGG | + | chr7_2:48928964-48928983 | None:intergenic | 30.0% |
| ATACATTCATGCAAATAGAG+AGG | + | chr7_2:48929092-48929111 | None:intergenic | 30.0% | |
| !! | GTTATGGTCTTGTGAAAATA+TGG | - | chr7_2:48929143-48929162 | Msa1060530:CDS | 30.0% |
| ! | TCGCAACTATTTGAAACATA+GGG | + | chr7_2:48929251-48929270 | None:intergenic | 30.0% |
| ! | ATCGCAACTATTTGAAACAT+AGG | + | chr7_2:48929252-48929271 | None:intergenic | 30.0% |
| ! | GTTTCAAATAGTTGCGATTT+TGG | - | chr7_2:48929254-48929273 | Msa1060530:CDS | 30.0% |
| !!! | ATATCCCTTTTTTTCTTAGG+GGG | + | chr7_2:48929280-48929299 | None:intergenic | 30.0% |
| AAAGAGAAACAAAACATAGG+GGG | + | chr7_2:48929308-48929327 | None:intergenic | 30.0% | |
| TAATATTGCTCCCTTGTATT+TGG | + | chr7_2:48929777-48929796 | None:intergenic | 30.0% | |
| !! | TATTGATTTGCAGTATGTGA+CGG | - | chr7_2:48929932-48929951 | Msa1060530:intron | 30.0% |
| ! | GGATCAATACCAATATGTTT+TGG | - | chr7_2:48929966-48929985 | Msa1060530:intron | 30.0% |
| TCAGTTTCACCAAAACATAT+TGG | + | chr7_2:48929978-48929997 | None:intergenic | 30.0% | |
| !!! | AATATGTTTTGGTGAAACTG+AGG | - | chr7_2:48929977-48929996 | Msa1060530:intron | 30.0% |
| TTTAAGTAGAAACGTGACTT+AGG | + | chr7_2:48930110-48930129 | None:intergenic | 30.0% | |
| ! | TCATTTGTTTGTTAATGTGC+AGG | - | chr7_2:48930224-48930243 | Msa1060530:CDS | 30.0% |
| ! | CATTTGTTTGTTAATGTGCA+GGG | - | chr7_2:48930225-48930244 | Msa1060530:CDS | 30.0% |
| ! | AAAGCTAACGTTTGTTGAAA+GGG | + | chr7_2:48928964-48928983 | None:intergenic | 30.0% |
| ATACATTCATGCAAATAGAG+AGG | + | chr7_2:48929092-48929111 | None:intergenic | 30.0% | |
| !! | GTTATGGTCTTGTGAAAATA+TGG | - | chr7_2:48929143-48929162 | Msa1060530:CDS | 30.0% |
| ! | TCGCAACTATTTGAAACATA+GGG | + | chr7_2:48929251-48929270 | None:intergenic | 30.0% |
| ! | ATCGCAACTATTTGAAACAT+AGG | + | chr7_2:48929252-48929271 | None:intergenic | 30.0% |
| ! | GTTTCAAATAGTTGCGATTT+TGG | - | chr7_2:48929254-48929273 | Msa1060530:CDS | 30.0% |
| !!! | ATATCCCTTTTTTTCTTAGG+GGG | + | chr7_2:48929280-48929299 | None:intergenic | 30.0% |
| AAAGAGAAACAAAACATAGG+GGG | + | chr7_2:48929308-48929327 | None:intergenic | 30.0% | |
| TAATATTGCTCCCTTGTATT+TGG | + | chr7_2:48929777-48929796 | None:intergenic | 30.0% | |
| !! | TATTGATTTGCAGTATGTGA+CGG | - | chr7_2:48929932-48929951 | Msa1060530:intron | 30.0% |
| ! | GGATCAATACCAATATGTTT+TGG | - | chr7_2:48929966-48929985 | Msa1060530:intron | 30.0% |
| TCAGTTTCACCAAAACATAT+TGG | + | chr7_2:48929978-48929997 | None:intergenic | 30.0% | |
| !!! | AATATGTTTTGGTGAAACTG+AGG | - | chr7_2:48929977-48929996 | Msa1060530:intron | 30.0% |
| TTTAAGTAGAAACGTGACTT+AGG | + | chr7_2:48930110-48930129 | None:intergenic | 30.0% | |
| ! | TCATTTGTTTGTTAATGTGC+AGG | - | chr7_2:48930224-48930243 | Msa1060530:CDS | 30.0% |
| ! | CATTTGTTTGTTAATGTGCA+GGG | - | chr7_2:48930225-48930244 | Msa1060530:CDS | 30.0% |
| ! | CAAAGCTAACGTTTGTTGAA+AGG | + | chr7_2:48928965-48928984 | None:intergenic | 35.0% |
| !! | TCAACAAACGTTAGCTTTGA+TGG | - | chr7_2:48928966-48928985 | Msa1060530:CDS | 35.0% |
| TCTACTATTGCCAACATCTT+GGG | - | chr7_2:48929023-48929042 | Msa1060530:intron | 35.0% | |
| ! | ACAAGGCTTAAATGCACTTT+TGG | - | chr7_2:48929223-48929242 | Msa1060530:CDS | 35.0% |
| ! | GCAACTATTTGAAACATAGG+GGG | + | chr7_2:48929249-48929268 | None:intergenic | 35.0% |
| ! | CGCAACTATTTGAAACATAG+GGG | + | chr7_2:48929250-48929269 | None:intergenic | 35.0% |
| TAATCCTTGGTCCAAATACA+AGG | - | chr7_2:48929763-48929782 | Msa1060530:intron | 35.0% | |
| AATCCTTGGTCCAAATACAA+GGG | - | chr7_2:48929764-48929783 | Msa1060530:intron | 35.0% | |
| TATGTGACGGTTTCATTAGA+AGG | - | chr7_2:48929945-48929964 | Msa1060530:intron | 35.0% | |
| TATGGTGAATTTGTGGCTAT+TGG | - | chr7_2:48930011-48930030 | Msa1060530:intron | 35.0% | |
| ! | CTTAGTGTCTTGTTCAAATC+TGG | + | chr7_2:48930047-48930066 | None:intergenic | 35.0% |
| ! | GCAATAATTGTGGACTGAAT+GGG | - | chr7_2:48930247-48930266 | Msa1060530:CDS | 35.0% |
| ! | CAATAATTGTGGACTGAATG+GGG | - | chr7_2:48930248-48930267 | Msa1060530:CDS | 35.0% |
| ! | AATAATTGTGGACTGAATGG+GGG | - | chr7_2:48930249-48930268 | Msa1060530:CDS | 35.0% |
| ! | CAAAGCTAACGTTTGTTGAA+AGG | + | chr7_2:48928965-48928984 | None:intergenic | 35.0% |
| !! | TCAACAAACGTTAGCTTTGA+TGG | - | chr7_2:48928966-48928985 | Msa1060530:CDS | 35.0% |
| TCTACTATTGCCAACATCTT+GGG | - | chr7_2:48929023-48929042 | Msa1060530:intron | 35.0% | |
| ! | ACAAGGCTTAAATGCACTTT+TGG | - | chr7_2:48929223-48929242 | Msa1060530:CDS | 35.0% |
| ! | GCAACTATTTGAAACATAGG+GGG | + | chr7_2:48929249-48929268 | None:intergenic | 35.0% |
| ! | CGCAACTATTTGAAACATAG+GGG | + | chr7_2:48929250-48929269 | None:intergenic | 35.0% |
| TAATCCTTGGTCCAAATACA+AGG | - | chr7_2:48929763-48929782 | Msa1060530:intron | 35.0% | |
| AATCCTTGGTCCAAATACAA+GGG | - | chr7_2:48929764-48929783 | Msa1060530:intron | 35.0% | |
| TATGTGACGGTTTCATTAGA+AGG | - | chr7_2:48929945-48929964 | Msa1060530:intron | 35.0% | |
| TATGGTGAATTTGTGGCTAT+TGG | - | chr7_2:48930011-48930030 | Msa1060530:intron | 35.0% | |
| ! | CTTAGTGTCTTGTTCAAATC+TGG | + | chr7_2:48930047-48930066 | None:intergenic | 35.0% |
| ! | GCAATAATTGTGGACTGAAT+GGG | - | chr7_2:48930247-48930266 | Msa1060530:CDS | 35.0% |
| ! | CAATAATTGTGGACTGAATG+GGG | - | chr7_2:48930248-48930267 | Msa1060530:CDS | 35.0% |
| ! | AATAATTGTGGACTGAATGG+GGG | - | chr7_2:48930249-48930268 | Msa1060530:CDS | 35.0% |
| TTTGTTGAAAGGGTGAGACA+AGG | + | chr7_2:48928954-48928973 | None:intergenic | 40.0% | |
| !! | AGAGTTGAGTTGAGAGAGTA+TGG | + | chr7_2:48929006-48929025 | None:intergenic | 40.0% |
| CTCTACTATTGCCAACATCT+TGG | - | chr7_2:48929022-48929041 | Msa1060530:intron | 40.0% | |
| TTTGGCCCCCTAAGAAAAAA+AGG | - | chr7_2:48929272-48929291 | Msa1060530:intron | 40.0% | |
| TTGGCCCCCTAAGAAAAAAA+GGG | - | chr7_2:48929273-48929292 | Msa1060530:intron | 40.0% | |
| ACAAATTCACCATATGCTGC+TGG | + | chr7_2:48930005-48930024 | None:intergenic | 40.0% | |
| AGCAGCATATGGTGAATTTG+TGG | - | chr7_2:48930004-48930023 | Msa1060530:intron | 40.0% | |
| CAACATGGTGTGAAGAACTA+AGG | + | chr7_2:48930081-48930100 | None:intergenic | 40.0% | |
| AGTTCTTCACACCATGTTGT+TGG | - | chr7_2:48930082-48930101 | Msa1060530:intron | 40.0% | |
| AATGTGCAGGGCAATAATTG+TGG | - | chr7_2:48930237-48930256 | Msa1060530:CDS | 40.0% | |
| ! | GGCAATAATTGTGGACTGAA+TGG | - | chr7_2:48930246-48930265 | Msa1060530:CDS | 40.0% |
| TTTGTTGAAAGGGTGAGACA+AGG | + | chr7_2:48928954-48928973 | None:intergenic | 40.0% | |
| !! | AGAGTTGAGTTGAGAGAGTA+TGG | + | chr7_2:48929006-48929025 | None:intergenic | 40.0% |
| CTCTACTATTGCCAACATCT+TGG | - | chr7_2:48929022-48929041 | Msa1060530:intron | 40.0% | |
| TTTGGCCCCCTAAGAAAAAA+AGG | - | chr7_2:48929272-48929291 | Msa1060530:intron | 40.0% | |
| TTGGCCCCCTAAGAAAAAAA+GGG | - | chr7_2:48929273-48929292 | Msa1060530:intron | 40.0% | |
| ACAAATTCACCATATGCTGC+TGG | + | chr7_2:48930005-48930024 | None:intergenic | 40.0% | |
| AGCAGCATATGGTGAATTTG+TGG | - | chr7_2:48930004-48930023 | Msa1060530:intron | 40.0% | |
| CAACATGGTGTGAAGAACTA+AGG | + | chr7_2:48930081-48930100 | None:intergenic | 40.0% | |
| AGTTCTTCACACCATGTTGT+TGG | - | chr7_2:48930082-48930101 | Msa1060530:intron | 40.0% | |
| AATGTGCAGGGCAATAATTG+TGG | - | chr7_2:48930237-48930256 | Msa1060530:CDS | 40.0% | |
| ! | GGCAATAATTGTGGACTGAA+TGG | - | chr7_2:48930246-48930265 | Msa1060530:CDS | 40.0% |
| TTGAGGGTAACCCAAGATGT+TGG | + | chr7_2:48929036-48929055 | None:intergenic | 45.0% | |
| AGAGAGGCTTAAGAGAGAGA+AGG | + | chr7_2:48929076-48929095 | None:intergenic | 45.0% | |
| TGACTTAGGCACCAACAACA+TGG | + | chr7_2:48930096-48930115 | None:intergenic | 45.0% | |
| TTGAGGGTAACCCAAGATGT+TGG | + | chr7_2:48929036-48929055 | None:intergenic | 45.0% | |
| AGAGAGGCTTAAGAGAGAGA+AGG | + | chr7_2:48929076-48929095 | None:intergenic | 45.0% | |
| TGACTTAGGCACCAACAACA+TGG | + | chr7_2:48930096-48930115 | None:intergenic | 45.0% | |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr7_2:48929444-48929463 | Msa1060530:intron | 5.0% |
| !!! | TAATTTAAAAATTTATTTTC+TGG | + | chr7_2:48929544-48929563 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr7_2:48929444-48929463 | Msa1060530:intron | 5.0% |
| !!! | TAATTTAAAAATTTATTTTC+TGG | + | chr7_2:48929544-48929563 | None:intergenic | 5.0% |
| TGACCAAGTCAACGCATACG+TGG | - | chr7_2:48929342-48929361 | Msa1060530:intron | 50.0% | |
| !! | ATGCCACGTATGCGTTGACT+TGG | + | chr7_2:48929348-48929367 | None:intergenic | 50.0% |
| GCTCCCTTGTATTTGGACCA+AGG | + | chr7_2:48929770-48929789 | None:intergenic | 50.0% | |
| TGACCAAGTCAACGCATACG+TGG | - | chr7_2:48929342-48929361 | Msa1060530:intron | 50.0% | |
| !! | ATGCCACGTATGCGTTGACT+TGG | + | chr7_2:48929348-48929367 | None:intergenic | 50.0% |
| GCTCCCTTGTATTTGGACCA+AGG | + | chr7_2:48929770-48929789 | None:intergenic | 50.0% | |
| ACTGAGGAGCCAGCAGCATA+TGG | - | chr7_2:48929993-48930012 | Msa1060530:intron | 55.0% | |
| TGGACTGAATGGGGGTCTCA+TGG | - | chr7_2:48930257-48930276 | Msa1060530:CDS | 55.0% | |
| ACTGAATGGGGGTCTCATGG+TGG | - | chr7_2:48930260-48930279 | Msa1060530:CDS | 55.0% | |
| ACTGAGGAGCCAGCAGCATA+TGG | - | chr7_2:48929993-48930012 | Msa1060530:intron | 55.0% | |
| TGGACTGAATGGGGGTCTCA+TGG | - | chr7_2:48930257-48930276 | Msa1060530:CDS | 55.0% | |
| ACTGAATGGGGGTCTCATGG+TGG | - | chr7_2:48930260-48930279 | Msa1060530:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 48928944 | 48930290 | 48928944 | ID=Msa1060530;Name=Msa1060530 |
| chr7_2 | mRNA | 48928944 | 48930290 | 48928944 | ID=Msa1060530-mRNA-1;Parent=Msa1060530;Name=Msa1060530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=4|0.5|0.33|1|1|1|3|0|118 |
| chr7_2 | exon | 48928944 | 48928988 | 48928944 | ID=Msa1060530-mRNA-1:exon:8791;Parent=Msa1060530-mRNA-1 |
| chr7_2 | exon | 48929089 | 48929289 | 48929089 | ID=Msa1060530-mRNA-1:exon:8790;Parent=Msa1060530-mRNA-1 |
| chr7_2 | exon | 48930176 | 48930290 | 48930176 | ID=Msa1060530-mRNA-1:exon:8789;Parent=Msa1060530-mRNA-1 |
| chr7_2 | five_prime_UTR | 48930287 | 48930290 | 48930287 | ID=Msa1060530-mRNA-1:five_prime_utr;Parent=Msa1060530-mRNA-1 |
| chr7_2 | CDS | 48930176 | 48930286 | 48930176 | ID=Msa1060530-mRNA-1:cds;Parent=Msa1060530-mRNA-1 |
| chr7_2 | CDS | 48929089 | 48929289 | 48929089 | ID=Msa1060530-mRNA-1:cds;Parent=Msa1060530-mRNA-1 |
| chr7_2 | CDS | 48928944 | 48928988 | 48928944 | ID=Msa1060530-mRNA-1:cds;Parent=Msa1060530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
