AlfalfaGEDB | Msa0452410

M. sativa cultivar zhongmu-4 / Msa0452410

KEGG: K08844
GO: -
PFAM: PF08263.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452410	XP_039687915.1	75.325	77	16	2	1	76	71	145	7.75e-23	105
Msa0452410	XP_039687915.1	77.570	107	22	1	80	184	31	137	2.40e-46	167

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452410	sp\|Q6JN46\|EIX2_SOLLC	40.187	107	58	1	83	183	35	141	6.05e-19	87.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452410	A0A396IR29	72.727	77	19	1	1	75	81	157	5.37e-23	105
Msa0452410	A0A396IR29	77.477	111	18	2	80	184	41	150	3.78e-46	171

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007010	Msa0452410	0.807438	5.055579e-50	-8.615850e-47
Msa0012440	Msa0452410	0.801898	7.244277e-49	-8.615850e-47
Msa0142230	Msa0452410	0.802423	5.649535e-49	-8.615850e-47
Msa0149170	Msa0452410	0.811714	6.096822e-51	-8.615850e-47
Msa0153430	Msa0452410	0.814210	1.729995e-51	-8.615850e-47
Msa0170010	Msa0452410	0.800633	1.315283e-48	-8.615850e-47
Msa0235190	Msa0452410	0.840937	6.435901e-58	-8.615850e-47
Msa0389310	Msa0452410	0.817673	2.918707e-52	-8.615850e-47
Msa0391050	Msa0452410	0.819832	9.440635e-53	-8.615850e-47
Msa0419970	Msa0452410	0.807293	5.426362e-50	-8.615850e-47
Msa0452410	Msa0458700	0.812232	4.702498e-51	-8.615850e-47
Msa0452410	Msa0517330	0.804072	2.574931e-49	-8.615850e-47
Msa0452410	Msa0533290	0.825492	4.550503e-54	-8.615850e-47
Msa0452410	Msa0533430	0.860631	1.805011e-63	-8.615850e-47
Msa0452410	Msa0580610	0.814143	1.790284e-51	-8.615850e-47
Msa0452410	Msa0584130	0.831075	2.050229e-55	-8.615850e-47
Msa0452410	Msa0629880	0.800792	1.220727e-48	-8.615850e-47
Msa0452410	Msa0629930	0.803570	3.272381e-49	-8.615850e-47
Msa0452410	Msa0629940	0.817579	3.065179e-52	-8.615850e-47
Msa0452410	Msa0641900	0.805877	1.079782e-49	-8.615850e-47
Msa0452410	Msa0668150	0.806750	7.066809e-50	-8.615850e-47
Msa0452410	Msa0784580	0.815452	9.179275e-52	-8.615850e-47
Msa0452410	Msa0815320	0.814513	1.482729e-51	-8.615850e-47
Msa0452410	Msa0818010	0.850238	1.932591e-60	-8.615850e-47
Msa0452410	Msa0818030	0.814103	1.827261e-51	-8.615850e-47
Msa0452410	Msa0858360	0.812668	3.775991e-51	-8.615850e-47
Msa0452410	Msa0870620	0.824613	7.341196e-54	-8.615850e-47
Msa0452410	Msa0872420	0.805173	1.516798e-49	-8.615850e-47
Msa0452410	Msa0884920	0.846683	1.862082e-59	-8.615850e-47
Msa0452410	Msa0898350	0.821005	5.079697e-53	-8.615850e-47
Msa0452410	Msa0898370	0.850365	1.780480e-60	-8.615850e-47
Msa0452410	Msa0905720	0.808207	3.469227e-50	-8.615850e-47
Msa0452410	Msa0912500	0.834355	3.143812e-56	-8.615850e-47
Msa0452410	Msa0946320	0.814021	1.904726e-51	-8.615850e-47
Msa0452410	Msa0965750	0.816306	5.920659e-52	-8.615850e-47
Msa0452410	Msa0974910	0.808241	3.411637e-50	-8.615850e-47
Msa0452410	Msa1002300	0.831122	1.996537e-55	-8.615850e-47
Msa0452410	Msa1006250	0.828468	8.841102e-55	-8.615850e-47
Msa0452410	Msa1020720	0.816505	5.342800e-52	-8.615850e-47
Msa0452410	Msa1027240	0.806842	6.757744e-50	-8.615850e-47
Msa0452410	Msa1048590	0.806831	6.795750e-50	-8.615850e-47
Msa0452410	Msa1048610	0.821734	3.449975e-53	-8.615850e-47
Msa0452410	Msa1050480	0.805918	1.058245e-49	-8.615850e-47
Msa0452410	Msa1059420	0.804164	2.463818e-49	-8.615850e-47
Msa0452410	Msa1060530	0.813346	2.681890e-51	-8.615850e-47
Msa0452410	Msa1131820	0.805975	1.029843e-49	-8.615850e-47
Msa0452410	Msa1139410	0.815687	8.138600e-52	-8.615850e-47
Msa0452410	Msa1198090	0.867358	1.451158e-65	-8.615850e-47
Msa0452410	Msa1233500	0.803137	4.023422e-49	-8.615850e-47
Msa0452410	Msa1275770	0.821347	4.238388e-53	-8.615850e-47
Msa0452410	Msa1288000	0.817861	2.647925e-52	-8.615850e-47
Msa0452410	Msa1289280	0.801241	9.880876e-49	-8.615850e-47
Msa0452410	Msa1359820	0.836159	1.101487e-56	-8.615850e-47
Msa0452410	Msa1384320	0.820837	5.552842e-53	-8.615850e-47
Msa0452410	Msa1419010	0.812966	3.248580e-51	-8.615850e-47
Msa0452410	Msa1423990	0.828989	6.614781e-55	-8.615850e-47
Msa0452410	Msa1444370	0.816277	6.007703e-52	-8.615850e-47
Msa0273570	Msa0452410	0.831426	1.680261e-55	-8.615850e-47
Msa0273580	Msa0452410	0.816051	6.747840e-52	-8.615850e-47
Msa0274520	Msa0452410	0.801233	9.916535e-49	-8.615850e-47
Msa0313780	Msa0452410	0.820451	6.811667e-53	-8.615850e-47
Msa0313920	Msa0452410	0.826239	3.025071e-54	-8.615850e-47
Msa0352000	Msa0452410	0.835332	1.784334e-56	-8.615850e-47
Msa0352010	Msa0452410	0.807164	5.778509e-50	-8.615850e-47
Msa0363980	Msa0452410	0.801455	8.930360e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452410	MtrunA17_Chr3g0097411	77.477	111	18	2	80	184	41	150	7.29e-50	171
Msa0452410	MtrunA17_Chr3g0097411	72.727	77	19	1	1	75	81	157	1.03e-26	105
Msa0452410	MtrunA17_Chr3g0095011	76.147	109	22	1	80	184	29	137	4.26e-49	169
Msa0452410	MtrunA17_Chr3g0095011	72.152	79	21	1	1	78	69	147	1.11e-27	108
Msa0452410	MtrunA17_Chr6g0464831	71.560	109	27	1	80	184	7	115	2.56e-48	157
Msa0452410	MtrunA17_Chr6g0464831	71.429	77	21	1	1	76	47	123	7.83e-31	112
Msa0452410	MtrunA17_Chr3g0097461	74.545	110	21	2	80	184	31	138	6.35e-47	163
Msa0452410	MtrunA17_Chr3g0097461	67.532	77	25	0	1	77	71	147	1.06e-23	97.4
Msa0452410	MtrunA17_Chr3g0097701	73.832	107	26	1	80	184	32	138	7.11e-47	163
Msa0452410	MtrunA17_Chr3g0097701	71.429	77	19	2	1	76	72	146	3.74e-25	101
Msa0452410	MtrunA17_Chr1g0197971	70.476	105	26	1	80	184	31	130	2.22e-46	150
Msa0452410	MtrunA17_Chr1g0197971	61.538	78	22	1	1	78	71	140	2.10e-22	89.0
Msa0452410	MtrunA17_Chr3g0097321	75.926	108	23	1	80	184	32	139	5.62e-46	160
Msa0452410	MtrunA17_Chr3g0097321	91.139	79	7	0	1	79	72	150	5.94e-40	144
Msa0452410	MtrunA17_Chr3g0097311	73.832	107	26	1	80	184	31	137	6.24e-46	160
Msa0452410	MtrunA17_Chr3g0097311	72.152	79	21	1	1	79	71	148	3.04e-26	104
Msa0452410	MtrunA17_Chr3g0097761	71.818	110	25	2	79	184	29	136	3.62e-45	158
Msa0452410	MtrunA17_Chr3g0097761	65.517	87	29	1	1	87	70	155	5.81e-27	106
Msa0452410	MtrunA17_Chr3g0097471	67.593	108	32	1	80	184	32	139	5.23e-45	147
Msa0452410	MtrunA17_Chr3g0097471	77.108	83	15	1	1	79	72	154	5.16e-37	127
Msa0452410	MtrunA17_Chr3g0097361	75.238	105	21	1	80	184	32	131	7.38e-45	157
Msa0452410	MtrunA17_Chr3g0097361	69.737	76	15	1	1	76	72	139	1.21e-23	97.1
Msa0452410	MtrunA17_Chr3g0097341	75.238	105	20	1	80	184	32	130	2.67e-44	155
Msa0452410	MtrunA17_Chr3g0097341	63.291	79	20	1	1	79	72	141	1.47e-20	88.2
Msa0452410	MtrunA17_Chr2g0317551	72.381	105	24	1	80	184	31	130	6.01e-44	155
Msa0452410	MtrunA17_Chr2g0317551	61.538	78	22	1	1	78	71	140	3.48e-21	90.1
Msa0452410	MtrunA17_Chr4g0023641	71.717	99	23	1	81	179	32	125	9.56e-44	147
Msa0452410	MtrunA17_Chr4g0023641	67.532	77	16	2	1	76	71	139	3.82e-23	93.2
Msa0452410	MtrunA17_Chr3g0097261	73.394	109	23	2	80	184	32	138	1.01e-43	154
Msa0452410	MtrunA17_Chr3g0097261	69.231	78	23	1	1	78	72	148	1.80e-23	96.7
Msa0452410	MtrunA17_Chr3g0097271	71.429	105	25	1	80	184	32	131	1.39e-43	147
Msa0452410	MtrunA17_Chr3g0097271	65.517	87	22	1	1	87	72	150	9.54e-26	100
Msa0452410	MtrunA17_Chr3g0104561	73.333	105	22	2	80	184	32	130	1.16e-41	148
Msa0452410	MtrunA17_Chr3g0104561	62.821	78	21	1	1	78	71	140	7.10e-21	89.4
Msa0452410	MtrunA17_Chr3g0097651	70.476	105	26	1	80	184	31	130	1.48e-41	147
Msa0452410	MtrunA17_Chr3g0097651	62.963	81	22	1	1	81	71	143	8.69e-23	94.7
Msa0452410	MtrunA17_Chr3g0093881	67.619	105	28	2	80	184	45	143	6.44e-38	138
Msa0452410	MtrunA17_Chr3g0093881	64.474	76	19	1	1	76	84	151	7.39e-21	89.0
Msa0452410	MtrunA17_Chr3g0097551	63.830	94	32	1	76	167	28	121	4.89e-34	118
Msa0452410	MtrunA17_Chr3g0097511	87.500	56	7	0	80	135	31	86	6.29e-31	109
Msa0452410	MtrunA17_Chr3g0097681	60.825	97	33	3	80	173	32	126	4.42e-28	107
Msa0452410	MtrunA17_Chr3g0097681	80.000	40	8	0	1	40	72	111	4.13e-15	72.0
Msa0452410	MtrunA17_Chr3g0097291	58.427	89	37	0	80	168	7	95	3.03e-27	105
Msa0452410	MtrunA17_Chr3g0097481	53.271	107	43	3	80	184	33	134	2.34e-25	99.0
Msa0452410	MtrunA17_Chr3g0097481	53.247	77	27	2	1	76	74	142	8.53e-15	70.5
Msa0452410	MtrunA17_Chr8g0354031	50.000	106	36	3	81	173	31	132	9.51e-25	100
Msa0452410	MtrunA17_Chr3g0097721	51.485	101	40	3	80	180	30	121	1.40e-24	99.0
Msa0452410	MtrunA17_Chr8g0354041	49.038	104	40	3	81	173	33	134	6.17e-24	98.2
Msa0452410	MtrunA17_Chr2g0298631	51.648	91	38	2	80	169	32	117	2.87e-22	88.2
Msa0452410	MtrunA17_Chr8g0354021	46.078	102	42	3	81	171	39	138	3.55e-22	92.8
Msa0452410	MtrunA17_Chr8g0354061	45.794	107	44	3	81	174	31	136	4.27e-22	92.8
Msa0452410	MtrunA17_Chr3g0120451	51.042	96	39	4	76	168	31	121	2.79e-20	87.4
Msa0452410	MtrunA17_Chr5g0420311	42.991	107	55	3	81	183	36	140	5.76e-20	84.3
Msa0452410	MtrunA17_Chr7g0219371	42.857	105	58	2	81	184	28	131	3.15e-19	84.3
Msa0452410	MtrunA17_Chr7g0219431	43.269	104	58	1	81	183	11	114	7.85e-19	77.8
Msa0452410	MtrunA17_Chr6g0465141	36.538	104	58	2	80	176	30	132	1.37e-18	80.5
Msa0452410	MtrunA17_Chr4g0022041	47.059	85	41	2	81	163	32	114	2.57e-18	81.6
Msa0452410	MtrunA17_Chr1g0190571	45.882	85	42	2	81	163	25	107	1.52e-17	79.7
Msa0452410	MtrunA17_Chr4g0022061	47.059	85	41	2	81	163	58	140	2.14e-17	78.6
Msa0452410	MtrunA17_Chr1g0202001	43.678	87	45	2	81	165	70	154	3.19e-17	78.6
Msa0452410	MtrunA17_Chr3g0098381	46.479	71	32	2	83	153	5	69	7.97e-17	71.2
Msa0452410	MtrunA17_Chr5g0429421	42.593	108	54	4	81	183	31	135	1.27e-16	77.0
Msa0452410	MtrunA17_Chr1g0161341	44.318	88	42	3	81	163	1	86	2.13e-16	71.2
Msa0452410	MtrunA17_Chr4g0019861	37.273	110	66	2	76	183	22	130	2.89e-16	75.9
Msa0452410	MtrunA17_Chr3g0087421	40.000	105	54	4	81	183	31	128	3.24e-16	75.9
Msa0452410	MtrunA17_Chr3g0106171	46.429	84	38	2	82	163	32	110	4.25e-16	75.5
Msa0452410	MtrunA17_Chr6g0465231	39.796	98	50	2	80	169	36	132	4.75e-16	75.5
Msa0452410	MtrunA17_Chr6g0465261	39.423	104	55	2	80	176	36	138	5.32e-16	72.8
Msa0452410	MtrunA17_Chr6g0464631	37.500	104	57	2	80	176	35	137	7.89e-16	74.7
Msa0452410	MtrunA17_Chr6g0465291	38.835	103	54	4	80	176	56	155	1.01e-15	74.3
Msa0452410	MtrunA17_Chr6g0465131	36.893	103	57	3	81	176	37	138	1.39e-15	73.9
Msa0452410	MtrunA17_Chr4g0019801	36.441	118	64	3	76	183	22	138	2.57e-15	73.2
Msa0452410	MtrunA17_Chr8g0380811	34.821	112	64	2	80	183	21	131	2.63e-15	73.2
Msa0452410	MtrunA17_Chr6g0465181	37.864	103	57	3	80	176	36	137	1.14e-14	71.2
Msa0452410	MtrunA17_Chr6g0465281	37.273	110	55	2	80	176	36	144	1.40e-14	70.1
Msa0452410	MtrunA17_Chr4g0008241	37.778	90	55	1	85	174	37	125	1.50e-14	70.9
Msa0452410	MtrunA17_Chr3g0097331	76.087	46	11	0	32	77	1	46	1.65e-14	70.9
Msa0452410	MtrunA17_Chr6g0465211	39.048	105	52	4	80	174	36	138	3.26e-14	70.1
Msa0452410	MtrunA17_Chr4g0019841	34.746	118	66	3	76	183	30	146	3.75e-14	69.7
Msa0452410	MtrunA17_Chr3g0097001	80.000	45	9	0	32	76	1	45	4.41e-14	69.7
Msa0452410	MtrunA17_Chr4g0019811	34.921	126	68	4	71	183	7	131	7.22e-14	68.2
Msa0452410	MtrunA17_Chr6g0463251	39.560	91	49	3	82	168	37	125	7.86e-14	68.9
Msa0452410	MtrunA17_Chr8g0380831	37.079	89	55	1	86	174	38	125	1.51e-13	68.2
Msa0452410	MtrunA17_Chr6g0455811	40.426	94	52	4	82	174	30	120	1.65e-13	67.8
Msa0452410	MtrunA17_Chr2g0284741	37.168	113	56	4	70	174	27	132	2.04e-13	67.8
Msa0452410	MtrunA17_Chr1g0203251	36.134	119	50	5	81	174	27	144	4.63e-13	66.6
Msa0452410	MtrunA17_Chr6g0455721	39.362	94	52	4	82	174	30	119	5.02e-13	66.6
Msa0452410	MtrunA17_Chr6g0455851	35.849	106	62	4	78	183	24	123	5.90e-13	66.2
Msa0452410	MtrunA17_Chr6g0463301	38.462	91	50	3	82	168	37	125	6.35e-13	66.2
Msa0452410	MtrunA17_Chr6g0463281	38.710	93	51	3	81	169	87	177	1.05e-12	65.5
Msa0452410	MtrunA17_Chr4g0004161	38.542	96	55	3	83	176	21	114	5.32e-12	63.5
Msa0452410	MtrunA17_Chr2g0304331	34.783	115	60	3	83	183	78	191	1.51e-11	62.4
Msa0452410	MtrunA17_Chr3g0097431	72.973	37	10	0	76	112	27	63	1.69e-11	57.4
Msa0452410	MtrunA17_Chr5g0420241	33.333	102	50	3	81	169	36	132	1.86e-11	59.7
Msa0452410	MtrunA17_Chr7g0215761	33.981	103	56	3	82	175	29	128	3.05e-11	61.2
Msa0452410	MtrunA17_Chr7g0216791	30.769	117	69	3	76	183	6	119	4.50e-11	60.5
Msa0452410	MtrunA17_Chr6g0455801	36.559	93	52	3	82	174	30	115	5.30e-11	60.8
Msa0452410	MtrunA17_Chr6g0455731	36.559	93	56	3	82	174	30	119	8.18e-11	60.1
Msa0452410	MtrunA17_Chr5g0439461	36.735	98	58	3	81	176	35	130	9.66e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452410	AT2G34930.1	37.273	110	59	3	82	183	32	139	4.47e-14	70.1
Msa0452410	AT1G33600.1	37.363	91	53	3	70	158	15	103	1.37e-11	62.8
Msa0452410	AT1G33600.2	37.363	91	53	3	70	158	15	103	1.37e-11	62.8

Find 20 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTTGAGTTTCTCAGTTATT+TGG	0.173697	3_3:+41186810	Msa0452410:CDS
ATATGAGCCAGTCAAAGTTT+TGG	0.361716	3_3:+41184471	Msa0452410:CDS
ATCATTGATGCCCTGTTTGA+AGG	0.365060	3_3:-41186626	None:intergenic
GACACTCTTAACCTTCAAAC+AGG	0.380444	3_3:+41186615	Msa0452410:CDS
CTTGACTTATCCCACTTATA+TGG	0.383339	3_3:+41184625	Msa0452410:CDS
ACTTGAGTTTCTTAGTTACT+TGG	0.392748	3_3:+41184522	Msa0452410:CDS
ATCAAAACATCATCAAAATC+AGG	0.432014	3_3:-41186760	None:intergenic
GTCCACTGTGACAACATTAC+CGG	0.460392	3_3:+41184409	Msa0452410:CDS
TCACCTTCCAAAACTTTGAC+TGG	0.465181	3_3:-41184478	None:intergenic
CAGGGCATCAATGATAGTCT+TGG	0.528611	3_3:+41186634	Msa0452410:CDS
AGGAGCAAAATGTTAGATGA+AGG	0.548231	3_3:-41184604	None:intergenic
GCAGAGTAGGACCATATAAG+TGG	0.568487	3_3:-41184636	None:intergenic
CATACCATTAACTAAGCTGT+AGG	0.572969	3_3:-41186888	None:intergenic
CATATAAGTGGGATAAGTCA+AGG	0.602247	3_3:-41184624	None:intergenic
CAGAGTAGGACCATATAAGT+GGG	0.628092	3_3:-41184635	None:intergenic
AAAGATTGTTGTGCTTGGGA+AGG	0.630654	3_3:+41186682	Msa0452410:CDS
TTCTTGTAATGTTGTCACAG+TGG	0.678296	3_3:-41186708	None:intergenic
ACACTCTTAACCTTCAAACA+GGG	0.713375	3_3:+41186616	Msa0452410:CDS
TTCCGGTAATGTTGTCACAG+TGG	0.723798	3_3:-41184411	None:intergenic
GTCTTGGTATGATTTCAACG+TGG	0.791156	3_3:+41186650	Msa0452410:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATAAAAGTTTTTTTTTTTTG+TGG	+	chr3_3:41185971-41185990	Msa0452410:intron	10.0%
!!	AGACAGTAAATAAAATAAAA+AGG	-	chr3_3:41184851-41184870	None:intergenic	15.0%
!!!	AATGTTTCTTTTTTTGAAAT+AGG	+	chr3_3:41185024-41185043	Msa0452410:intron	15.0%
!!!	TTAGATTTTAGAATTTAAGT+CGG	-	chr3_3:41185645-41185664	None:intergenic	15.0%
!!!	ATGATAAGTTTTGAATAATT+TGG	+	chr3_3:41186157-41186176	Msa0452410:intron	15.0%
!!	AAAAAAGATAAATTGGAAAA+AGG	-	chr3_3:41186368-41186387	None:intergenic	15.0%
!!	AAGCTTAAAAAAAGATAAAT+TGG	-	chr3_3:41186375-41186394	None:intergenic	15.0%
!!!	TTTTTGATCTTTAAATGGAT+CGG	-	chr3_3:41185393-41185412	None:intergenic	20.0%
!!!	ACTTGTTTTTGATCTTTAAA+TGG	-	chr3_3:41185398-41185417	None:intergenic	20.0%
!!!	TACGAGAATAAATTTTCTTT+TGG	-	chr3_3:41185534-41185553	None:intergenic	20.0%
!!	AAGTAATATTAAGAGAAAAC+TGG	-	chr3_3:41185565-41185584	None:intergenic	20.0%
!!	AGTATAGATATTTGAACATA+AGG	-	chr3_3:41185600-41185619	None:intergenic	20.0%
!!!	TAGATTTTAGAATTTAAGTC+GGG	-	chr3_3:41185644-41185663	None:intergenic	20.0%
!!!	ATTTTCTTACTGTTAACTAA+TGG	-	chr3_3:41185843-41185862	None:intergenic	20.0%
!!	TTTACTGTGAGTAAAAATAA+AGG	-	chr3_3:41185952-41185971	None:intergenic	20.0%
!!	AAAACTATAAGACTTTGAAT+AGG	-	chr3_3:41186226-41186245	None:intergenic	20.0%
!!!	TATTCAAAGTCTTATAGTTT+TGG	+	chr3_3:41186225-41186244	Msa0452410:intron	20.0%
!!!	AAAGTCTTGTAGTTTTAATT+TGG	+	chr3_3:41186277-41186296	Msa0452410:intron	20.0%
!!	ATCAATTTTTGTAACTCTTC+CGG	-	chr3_3:41184431-41184450	None:intergenic	25.0%
!	ACATCAAAAAGTCTACTAAA+TGG	+	chr3_3:41184946-41184965	Msa0452410:intron	25.0%
!	AAATATAGCCTAATTGTTTC+AGG	+	chr3_3:41185047-41185066	Msa0452410:intron	25.0%
!	AATATAGCCTAATTGTTTCA+GGG	+	chr3_3:41185048-41185067	Msa0452410:intron	25.0%
!	TCTTATAACTTGGTTTAACT+TGG	+	chr3_3:41185230-41185249	Msa0452410:intron	25.0%
!	TATTGTTCCAGTCAAATTAT+TGG	+	chr3_3:41185730-41185749	Msa0452410:intron	25.0%
!	TTACAAACCAATAATTTGAC+TGG	-	chr3_3:41185740-41185759	None:intergenic	25.0%
!	TAAAGAGTTTCTCATATGAT+TGG	+	chr3_3:41185757-41185776	Msa0452410:intron	25.0%
!!	ATCTGTGATTTCTAAAAAAC+CGG	+	chr3_3:41186048-41186067	Msa0452410:intron	25.0%
!	ATTATTCAAAGAAACGAAGT+TGG	-	chr3_3:41186123-41186142	None:intergenic	25.0%
!!	AAAACTACAAGACTTTGAAA+AGG	-	chr3_3:41186273-41186292	None:intergenic	25.0%
!	ATATAAGATCTTGAGTTATG+AGG	-	chr3_3:41186398-41186417	None:intergenic	25.0%
!	TGAAATTTGTGTAGTAAGAA+TGG	-	chr3_3:41186503-41186522	None:intergenic	25.0%
!	ATCAAAACATCATCAAAATC+AGG	-	chr3_3:41186763-41186782	None:intergenic	25.0%
!!!	GATTTTGATGATGTTTTGAT+AGG	+	chr3_3:41186763-41186782	Msa0452410:CDS	25.0%
	ACTTGAGTTTCTTAGTTACT+TGG	+	chr3_3:41184522-41184541	Msa0452410:CDS	30.0%
!!	GTAATGTTTTGTTGAATGGA+TGG	-	chr3_3:41184583-41184602	None:intergenic	30.0%
!!	AGGTGTAATGTTTTGTTGAA+TGG	-	chr3_3:41184587-41184606	None:intergenic	30.0%
	TTTCCATGCTTTGATGTTAT+AGG	+	chr3_3:41184702-41184721	Msa0452410:intron	30.0%
	AAACCTATAACATCAAAGCA+TGG	-	chr3_3:41184708-41184727	None:intergenic	30.0%
!	AGAGATTGACTTAATTGTGT+TGG	-	chr3_3:41184755-41184774	None:intergenic	30.0%
	ATAGTATGTATCTCAAGACT+AGG	+	chr3_3:41184796-41184815	Msa0452410:intron	30.0%
	TGTGTTGGATAAGGAAAAAT+TGG	-	chr3_3:41184926-41184945	None:intergenic	30.0%
!	TTTTGATGTTGTGTTGGATA+AGG	-	chr3_3:41184935-41184954	None:intergenic	30.0%
!	TAGACTTTTTGATGTTGTGT+TGG	-	chr3_3:41184941-41184960	None:intergenic	30.0%
	TACATACACTTATAGTGAGA+CGG	+	chr3_3:41185201-41185220	Msa0452410:intron	30.0%
	AAGAAGAAGAGAAATCATCT+AGG	+	chr3_3:41185332-41185351	Msa0452410:intron	30.0%
	GTGTTAGTTCAGATTATGTA+CGG	-	chr3_3:41185449-41185468	None:intergenic	30.0%
!!	TTATCTAGAAGAAGTGTTAG+TGG	-	chr3_3:41185475-41185494	None:intergenic	30.0%
	TCTTCTAGATAAATTTGAGC+AGG	+	chr3_3:41185483-41185502	Msa0452410:intron	30.0%
!	TTCTTTTGGCAAGTAATTCT+TGG	-	chr3_3:41185520-41185539	None:intergenic	30.0%
	ATATGAATTTGAGTCGTTGA+AGG	-	chr3_3:41185687-41185706	None:intergenic	30.0%
	ACAATACCAAAAGAAATTGG+AGG	-	chr3_3:41185716-41185735	None:intergenic	30.0%
	GGAACAATACCAAAAGAAAT+TGG	-	chr3_3:41185719-41185738	None:intergenic	30.0%
	TTAACTAATGGTGAGACTAA+TGG	-	chr3_3:41185831-41185850	None:intergenic	30.0%
	TTTGAATAATTTGGCACATG+AGG	+	chr3_3:41186166-41186185	Msa0452410:intron	30.0%
	TATAAGACTTTGAATAGGCA+GGG	-	chr3_3:41186221-41186240	None:intergenic	30.0%
!!	AAGGTTGATAAGAAAGTATG+TGG	-	chr3_3:41186349-41186368	None:intergenic	30.0%
	TGAAAAAGATTGTTGTGCTT+GGG	+	chr3_3:41186678-41186697	Msa0452410:CDS	30.0%
	GTTACAAAAATTGATCTCAG+CGG	+	chr3_3:41186733-41186752	Msa0452410:CDS	30.0%
	ACTTGAGTTTCTCAGTTATT+TGG	+	chr3_3:41186810-41186829	Msa0452410:CDS	30.0%
!!!	AGGATGTTGTTTTGAATAGA+TGG	-	chr3_3:41186871-41186890	None:intergenic	30.0%
!	ATATGAGCCAGTCAAAGTTT+TGG	+	chr3_3:41184471-41184490	Msa0452410:CDS	35.0%
	AGGAGCAAAATGTTAGATGA+AGG	-	chr3_3:41184607-41184626	None:intergenic	35.0%
	CATATAAGTGGGATAAGTCA+AGG	-	chr3_3:41184627-41184646	None:intergenic	35.0%
	CTTGACTTATCCCACTTATA+TGG	+	chr3_3:41184625-41184644	Msa0452410:CDS	35.0%
	TTCTCAGTATGTTCAGCTAT+AGG	-	chr3_3:41184731-41184750	None:intergenic	35.0%
	TAAGTCAATCTCTTCCACAA+TGG	+	chr3_3:41184762-41184781	Msa0452410:intron	35.0%
!	GTATCTCAAGACTAGGTTTT+TGG	+	chr3_3:41184803-41184822	Msa0452410:intron	35.0%
	GGAAAGCTATTATGAGAAGT+TGG	+	chr3_3:41184824-41184843	Msa0452410:intron	35.0%
	GCAGATATGTTTGAAGAGTA+AGG	-	chr3_3:41184901-41184920	None:intergenic	35.0%
	AACATGTAGCTTGAACATGA+AGG	-	chr3_3:41185002-41185021	None:intergenic	35.0%
	TATCCATTCCTTTCATTCAG+AGG	-	chr3_3:41185074-41185093	None:intergenic	35.0%
	TGAATGAAAGGAATGGATAG+AGG	+	chr3_3:41185075-41185094	Msa0452410:intron	35.0%
	GCAATAAAATACACTGTCAG+TGG	-	chr3_3:41185143-41185162	None:intergenic	35.0%
!	TTTTTCCCAAATCTTCCACA+AGG	+	chr3_3:41185261-41185280	Msa0452410:intron	35.0%
	AAGAAGAGAAATCATCTAGG+AGG	+	chr3_3:41185335-41185354	Msa0452410:intron	35.0%
	AGAAGAGAAATCATCTAGGA+GGG	+	chr3_3:41185336-41185355	Msa0452410:intron	35.0%
	GATCTTTAAATGGATCGGAA+CGG	-	chr3_3:41185388-41185407	None:intergenic	35.0%
	CTAGATAAATTTGAGCAGGT+CGG	+	chr3_3:41185487-41185506	Msa0452410:intron	35.0%
	TAGATAAATTTGAGCAGGTC+GGG	+	chr3_3:41185488-41185507	Msa0452410:intron	35.0%
!	TTCAAGCCTCCAATTTCTTT+TGG	+	chr3_3:41185707-41185726	Msa0452410:intron	35.0%
!!!	TTTTTTGTTGCAATGCTCTC+TGG	+	chr3_3:41185780-41185799	Msa0452410:intron	35.0%
	TAATGGAATGTTCACCACAT+TGG	-	chr3_3:41185814-41185833	None:intergenic	35.0%
	ACAACGTGGGTATCAAATTT+CGG	-	chr3_3:41186075-41186094	None:intergenic	35.0%
	CTATAAGACTTTGAATAGGC+AGG	-	chr3_3:41186222-41186241	None:intergenic	35.0%
	ATGTGGACAACATTCAAATG+AGG	-	chr3_3:41186332-41186351	None:intergenic	35.0%
	ACACTCTTAACCTTCAAACA+GGG	+	chr3_3:41186616-41186635	Msa0452410:CDS	35.0%
	CTGAAAAAGATTGTTGTGCT+TGG	+	chr3_3:41186677-41186696	Msa0452410:CDS	35.0%
	TTCTTGTAATGTTGTCACAG+TGG	-	chr3_3:41186711-41186730	None:intergenic	35.0%
	TCACCTTCCAAAACTTTGAC+TGG	-	chr3_3:41184481-41184500	None:intergenic	40.0%
	CAGAGTAGGACCATATAAGT+GGG	-	chr3_3:41184638-41184657	None:intergenic	40.0%
	AGATTATCCATGTGCAGAGT+AGG	-	chr3_3:41184652-41184671	None:intergenic	40.0%
	TATGAACTACCAGTCCATTG+TGG	-	chr3_3:41184779-41184798	None:intergenic	40.0%
	TGGATGACGAAAACTGTTTC+AGG	+	chr3_3:41184966-41184985	Msa0452410:intron	40.0%
	GGATGACGAAAACTGTTTCA+GGG	+	chr3_3:41184967-41184986	Msa0452410:intron	40.0%
	GTAAGACACACTGTTAATGC+AGG	-	chr3_3:41185184-41185203	None:intergenic	40.0%
	TACACTTATAGTGAGACGGA+CGG	+	chr3_3:41185205-41185224	Msa0452410:intron	40.0%
	TGCAACCTTGTGGAAGATTT+GGG	-	chr3_3:41185269-41185288	None:intergenic	40.0%
	ATGCAACCTTGTGGAAGATT+TGG	-	chr3_3:41185270-41185289	None:intergenic	40.0%
	TTATCTAGCATGCAACCTTG+TGG	-	chr3_3:41185279-41185298	None:intergenic	40.0%
	TTGCATGCTAGATAAGTGCT+AGG	+	chr3_3:41185284-41185303	Msa0452410:intron	40.0%
	TAGATAAGTGCTAGGCTCTT+AGG	+	chr3_3:41185292-41185311	Msa0452410:intron	40.0%
	AGATAAGTGCTAGGCTCTTA+GGG	+	chr3_3:41185293-41185312	Msa0452410:intron	40.0%
!!	CTAGAAGAAGTGTTAGTGGA+TGG	-	chr3_3:41185471-41185490	None:intergenic	40.0%
!!	GATTGCTACACATGGTTTTG+TGG	-	chr3_3:41186561-41186580	None:intergenic	40.0%
	AACTGTGTGATTGCTACACA+TGG	-	chr3_3:41186569-41186588	None:intergenic	40.0%
	GACACTCTTAACCTTCAAAC+AGG	+	chr3_3:41186615-41186634	Msa0452410:CDS	40.0%
	ATCATTGATGCCCTGTTTGA+AGG	-	chr3_3:41186629-41186648	None:intergenic	40.0%
	GTCTTGGTATGATTTCAACG+TGG	+	chr3_3:41186650-41186669	Msa0452410:CDS	40.0%
	AAAGATTGTTGTGCTTGGGA+AGG	+	chr3_3:41186682-41186701	Msa0452410:CDS	40.0%
	GTCCACTGTGACAACATTAC+CGG	+	chr3_3:41184409-41184428	Msa0452410:CDS	45.0%
	TTCCGGTAATGTTGTCACAG+TGG	-	chr3_3:41184414-41184433	None:intergenic	45.0%
!!!	GAGCCAGTCAAAGTTTTGGA+AGG	+	chr3_3:41184475-41184494	Msa0452410:CDS	45.0%
	GCAGAGTAGGACCATATAAG+TGG	-	chr3_3:41184639-41184658	None:intergenic	45.0%
	ATATGGTCCTACTCTGCACA+TGG	+	chr3_3:41184642-41184661	Msa0452410:intron	45.0%
	CAATCTCTTCCACAATGGAC+TGG	+	chr3_3:41184767-41184786	Msa0452410:intron	45.0%
	CTTGAACATGAAGGAAGCAG+AGG	-	chr3_3:41184993-41185012	None:intergenic	45.0%
	TCAGAGGCCCTGAAACAATT+AGG	-	chr3_3:41185058-41185077	None:intergenic	45.0%
	TTTCAGGGCCTCTGAATGAA+AGG	+	chr3_3:41185063-41185082	Msa0452410:intron	45.0%
!	ACGGACGGAGTCTTATAACT+TGG	+	chr3_3:41185220-41185239	Msa0452410:intron	45.0%
	TATCATTCTACCCGGTAACG+TGG	-	chr3_3:41185365-41185384	None:intergenic	45.0%
	CAGATTATGTACGGTGTCCA+GGG	-	chr3_3:41185440-41185459	None:intergenic	45.0%
	TCAGATTATGTACGGTGTCC+AGG	-	chr3_3:41185441-41185460	None:intergenic	45.0%
	GTGGGTATCAAATTTCGGTC+CGG	-	chr3_3:41186070-41186089	None:intergenic	45.0%
!	ACCCACGTTGTTAGCTTCAT+AGG	+	chr3_3:41186084-41186103	Msa0452410:intron	45.0%
	GCCTATGAAGCTAACAACGT+GGG	-	chr3_3:41186088-41186107	None:intergenic	45.0%
	AGCCTATGAAGCTAACAACG+TGG	-	chr3_3:41186089-41186108	None:intergenic	45.0%
	AAGACTTTGAATAGGCAGGG+AGG	-	chr3_3:41186218-41186237	None:intergenic	45.0%
!	CAGGGCATCAATGATAGTCT+TGG	+	chr3_3:41186634-41186653	Msa0452410:CDS	45.0%
	GGGCCTCTGAATGAAAGGAA+TGG	+	chr3_3:41185068-41185087	Msa0452410:intron	50.0%
	ACTGTCAGTGGAGTCAACTC+TGG	-	chr3_3:41185131-41185150	None:intergenic	50.0%
	CGGAACGGTATCATTCTACC+CGG	-	chr3_3:41185373-41185392	None:intergenic	50.0%
	TTGAATAGGCAGGGAGGACT+TGG	-	chr3_3:41186212-41186231	None:intergenic	50.0%
	TAGGAGGGAGACCACGTTAC+CGG	+	chr3_3:41185351-41185370	Msa0452410:intron	55.0%
	GTGTCCAGGGAAACAAGAGG+CGG	-	chr3_3:41185427-41185446	None:intergenic	55.0%
	ACGGTGTCCAGGGAAACAAG+AGG	-	chr3_3:41185430-41185449	None:intergenic	55.0%
	CTCTGGCGTGCAAACCAATG+TGG	+	chr3_3:41185797-41185816	Msa0452410:intron	55.0%
	AGGAGGGAGACCACGTTACC+GGG	+	chr3_3:41185352-41185371	Msa0452410:intron	60.0%
!	TCCTCCGCCTCTTGTTTCCC+TGG	+	chr3_3:41185420-41185439	Msa0452410:intron	60.0%
	TCCAGGGAAACAAGAGGCGG+AGG	-	chr3_3:41185424-41185443	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	41184409	41186900	41184409	ID=Msa0452410;Name=Msa0452410
chr3_3	mRNA	41184409	41186900	41184409	ID=Msa0452410-mRNA-1;Parent=Msa0452410;Name=Msa0452410-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|0\|0\|1\|0\|0\|2\|0\|184
chr3_3	exon	41184409	41184646	41184409	ID=Msa0452410-mRNA-1:exon:7530;Parent=Msa0452410-mRNA-1
chr3_3	exon	41186587	41186900	41186587	ID=Msa0452410-mRNA-1:exon:7531;Parent=Msa0452410-mRNA-1
chr3_3	CDS	41184409	41184646	41184409	ID=Msa0452410-mRNA-1:cds;Parent=Msa0452410-mRNA-1
chr3_3	CDS	41186587	41186900	41186587	ID=Msa0452410-mRNA-1:cds;Parent=Msa0452410-mRNA-1

Gene Sequence

>Msa0452410

GTCCACTGTGACAACATTACCGGAAGAGTTACAAAAATTGATCTCAACACTTATTTTTTTGAATATGAGCCAGTCAAAGTTTTGGAAGGTGAGATGAATCTTTGTATTCTTGAACTTGAGTTTCTTAGTTACTTGGATTTGAGTGAAAATAATTTTGATGTGATAAGAATTCCATCCATTCAACAAAACATTACACCTTCATCTAACATTTTGCTCCTTGACTTATCCCACTTATATGTTGTTCGATGCAATGAGAAAGATCGAGAGACACTCTTAACCTTCAAACAGGGCATCAATGATAGTCTTGGTATGATTTCAACGTGGTCGACTGAAAAAGATTGTTGTGCTTGGGAAGGAGTCCACTGTGACAACATTACAAGAAGAGTTACAAAAATTGATCTCAGCGGACAACCTGATTTTGATGATGTTTTGATAGGTGAGATGAATCTTTGTATTCTTGAACTTGAGTTTCTCAGTTATTTGGATTTGATTCATAATGAATTTGATTTGATAAGAATTCCATCTATTCAAAACAACATCCTACAGCTTAGT

Protein sequence

>Msa0452410

VHCDNITGRVTKIDLNTYFFEYEPVKVLEGEMNLCILELEFLSYLDLSENNFDVIRIPSIQQNITPSSNILLLDLSHLYVVRCNEKDRETLLTFKQGINDSLGMISTWSTEKDCCAWEGVHCDNITRRVTKIDLSGQPDFDDVLIGEMNLCILELEFLSYLDLIHNEFDLIRIPSIQNNILQLS