AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1061810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061810 MtrunA17_Chr7g0240471 94.792 96 5 0 1 96 1 96 3.53e-62 185
Msa1061810 MtrunA17_Chr7g0240451 86.458 96 13 0 1 96 1 96 3.32e-57 172
Msa1061810 MtrunA17_Chr7g0240441 67.213 61 4 1 36 96 29 73 2.21e-19 76.3
Msa1061810 MtrunA17_Chr8g0368861 45.946 74 38 2 24 96 27 99 5.31e-13 60.5
Msa1061810 MtrunA17_Chr8g0368831 44.595 74 39 2 24 96 35 107 2.05e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061810 AT3G53980.2 63.514 74 26 1 23 96 21 93 4.37e-29 102
Msa1061810 AT3G53980.1 63.514 74 26 1 23 96 21 93 4.37e-29 102
Msa1061810 AT5G05960.1 51.613 93 38 2 4 96 10 95 8.98e-27 95.9
Msa1061810 AT2G37870.1 44.186 86 44 3 11 94 9 92 8.07e-15 65.5

Find 23 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTGAAAACAAACATAAA+TGG 0.229535 7_2:-52156512 Msa1061810:CDS
GATGCTGTTAGCTACTATTA+TGG 0.249165 7_2:-52156479 Msa1061810:three_prime_UTR
AGCTTAAAAGCTTCATTATC+TGG 0.286546 7_2:+52157473 None:intergenic
TGTGGTTTATTTGATGCTCT+TGG 0.311631 7_2:-52156348 Msa1061810:three_prime_UTR
GTCCTTGTTGCAGGGATTCA+TGG 0.338655 7_2:-52157533 Msa1061810:CDS
CAACAACCTCAACTCTTTCA+AGG 0.398597 7_2:+52156532 None:intergenic
TGCTGAAAACAAACATAAAT+GGG 0.434655 7_2:-52156511 Msa1061810:CDS
TCAAACGTTGCTAAAATGTC+TGG 0.462464 7_2:-52157338 Msa1061810:CDS
ATGAAGATGCTGTGCCTAGT+TGG 0.489536 7_2:-52157563 Msa1061810:CDS
AATAAAACATTCTCTTTCTG+TGG 0.509234 7_2:-52156366 Msa1061810:three_prime_UTR
TTTCTTGTTTGTTTATAGTG+TGG 0.514685 7_2:-52156425 Msa1061810:three_prime_UTR
GGGATAGTAACAGCAATTTG+AGG 0.522424 7_2:+52157308 None:intergenic
GTTGAAAGTGCTGGTGAATG+TGG 0.534504 7_2:-52157509 Msa1061810:CDS
TCTTGTGCTGCACTTGCACA+AGG 0.541464 7_2:+52157446 None:intergenic
ACTCTTCCTTGAAAGAGTTG+AGG 0.566469 7_2:-52156538 Msa1061810:CDS
CAAGGACTACAAAACCAACT+AGG 0.588924 7_2:+52157549 None:intergenic
AAAACTGCACAAAGACAACT+TGG 0.590774 7_2:+52157365 None:intergenic
TGTGCTCAGACTAAGAAACT+TGG 0.591888 7_2:-52157395 Msa1061810:CDS
CTCCATGAATCCCTGCAACA+AGG 0.594877 7_2:+52157531 None:intergenic
AGTGCTGGTGAATGTGGAAG+AGG 0.608175 7_2:-52157503 Msa1061810:CDS
ATTCATGGAGTTGAAAGTGC+TGG 0.616969 7_2:-52157518 Msa1061810:CDS
AATACAACACAACTAAGTTG+TGG 0.620752 7_2:+52156453 None:intergenic
GTGTACACAAGTGAGCTGCT+AGG 0.629312 7_2:+52156396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAGAAATATATTAATAT+AGG - chr7_2:52156798-52156817 Msa1061810:intron 10.0%
!! TATATTAATATAGGAAAAAA+AGG - chr7_2:52156807-52156826 Msa1061810:intron 10.0%
!!! TTTCATTACATTATTTTTTT+TGG + chr7_2:52157164-52157183 None:intergenic 10.0%
!! ATAGAGAAATATATTAATAT+AGG - chr7_2:52156798-52156817 Msa1061810:intron 10.0%
!! TATATTAATATAGGAAAAAA+AGG - chr7_2:52156807-52156826 Msa1061810:intron 10.0%
!!! TTTCATTACATTATTTTTTT+TGG + chr7_2:52157164-52157183 None:intergenic 10.0%
!! AAGAATAAATATAAACGAAA+TGG + chr7_2:52156673-52156692 None:intergenic 15.0%
!!! ATTTTGTAGTTTTTTTCTTA+GGG + chr7_2:52156883-52156902 None:intergenic 15.0%
!!! AATTTTGTAGTTTTTTTCTT+AGG + chr7_2:52156884-52156903 None:intergenic 15.0%
!!! TTTTATTTTTAAATTCATGC+AGG + chr7_2:52156963-52156982 None:intergenic 15.0%
!! AAATAAAAAAAAATAACACG+TGG - chr7_2:52156975-52156994 Msa1061810:intron 15.0%
!!! TTTTGTAGTTTTTTTTTCTT+AGG - chr7_2:52157088-52157107 Msa1061810:intron 15.0%
!! AAGAATAAATATAAACGAAA+TGG + chr7_2:52156673-52156692 None:intergenic 15.0%
!!! ATTTTGTAGTTTTTTTCTTA+GGG + chr7_2:52156883-52156902 None:intergenic 15.0%
!!! AATTTTGTAGTTTTTTTCTT+AGG + chr7_2:52156884-52156903 None:intergenic 15.0%
!!! TTTTATTTTTAAATTCATGC+AGG + chr7_2:52156963-52156982 None:intergenic 15.0%
!! AAATAAAAAAAAATAACACG+TGG - chr7_2:52156975-52156994 Msa1061810:intron 15.0%
!!! TTTTGTAGTTTTTTTTTCTT+AGG - chr7_2:52157088-52157107 Msa1061810:intron 15.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG + chr7_2:52156882-52156901 None:intergenic 20.0%
!! AACAACAAAAAAATGTGAAA+CGG - chr7_2:52157184-52157203 Msa1061810:intron 20.0%
!!! CTATTTGTTAATTTTCTTGA+TGG - chr7_2:52157246-52157265 Msa1061810:intron 20.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG + chr7_2:52156882-52156901 None:intergenic 20.0%
!! AACAACAAAAAAATGTGAAA+CGG - chr7_2:52157184-52157203 Msa1061810:intron 20.0%
!!! CTATTTGTTAATTTTCTTGA+TGG - chr7_2:52157246-52157265 Msa1061810:intron 20.0%
!!! TTTGTAGTTTTTTTCTTAGG+GGG + chr7_2:52156881-52156900 None:intergenic 25.0%
!!! TGTAGTTTTTTTTTCTTAGG+AGG - chr7_2:52157091-52157110 Msa1061810:intron 25.0%
! TTGCTGAAAACAAACATAAA+TGG - chr7_2:52157341-52157360 Msa1061810:CDS 25.0%
! TGCTGAAAACAAACATAAAT+GGG - chr7_2:52157342-52157361 Msa1061810:CDS 25.0%
!! TTTCTTGTTTGTTTATAGTG+TGG - chr7_2:52157428-52157447 Msa1061810:CDS 25.0%
!!! AGAGAATGTTTTATTCATGA+GGG + chr7_2:52157482-52157501 None:intergenic 25.0%
!!! AAGAGAATGTTTTATTCATG+AGG + chr7_2:52157483-52157502 None:intergenic 25.0%
! AATAAAACATTCTCTTTCTG+TGG - chr7_2:52157487-52157506 Msa1061810:CDS 25.0%
!!! TTTGTAGTTTTTTTCTTAGG+GGG + chr7_2:52156881-52156900 None:intergenic 25.0%
!!! TGTAGTTTTTTTTTCTTAGG+AGG - chr7_2:52157091-52157110 Msa1061810:intron 25.0%
! TTGCTGAAAACAAACATAAA+TGG - chr7_2:52157341-52157360 Msa1061810:CDS 25.0%
! TGCTGAAAACAAACATAAAT+GGG - chr7_2:52157342-52157361 Msa1061810:CDS 25.0%
!! TTTCTTGTTTGTTTATAGTG+TGG - chr7_2:52157428-52157447 Msa1061810:CDS 25.0%
!!! AGAGAATGTTTTATTCATGA+GGG + chr7_2:52157482-52157501 None:intergenic 25.0%
!!! AAGAGAATGTTTTATTCATG+AGG + chr7_2:52157483-52157502 None:intergenic 25.0%
! AATAAAACATTCTCTTTCTG+TGG - chr7_2:52157487-52157506 Msa1061810:CDS 25.0%
AGCTTAAAAGCTTCATTATC+TGG + chr7_2:52156383-52156402 None:intergenic 30.0%
GACAACTTAAAAGAAACTGA+GGG + chr7_2:52156635-52156654 None:intergenic 30.0%
AATACAACACAACTAAGTTG+TGG + chr7_2:52157403-52157422 None:intergenic 30.0%
AGCTTAAAAGCTTCATTATC+TGG + chr7_2:52156383-52156402 None:intergenic 30.0%
GACAACTTAAAAGAAACTGA+GGG + chr7_2:52156635-52156654 None:intergenic 30.0%
AATACAACACAACTAAGTTG+TGG + chr7_2:52157403-52157422 None:intergenic 30.0%
AAAACTGCACAAAGACAACT+TGG + chr7_2:52156491-52156510 None:intergenic 35.0%
TCAAACGTTGCTAAAATGTC+TGG - chr7_2:52156515-52156534 Msa1061810:CDS 35.0%
TAGCAAAGTTACAGCGTTTA+GGG + chr7_2:52156568-52156587 None:intergenic 35.0%
TTAGCAAAGTTACAGCGTTT+AGG + chr7_2:52156569-52156588 None:intergenic 35.0%
CGACAACTTAAAAGAAACTG+AGG + chr7_2:52156636-52156655 None:intergenic 35.0%
CTAAAATCACAACTTCGTGA+AGG + chr7_2:52156858-52156877 None:intergenic 35.0%
TGCTACAGTTGCAAAACTTA+GGG + chr7_2:52156910-52156929 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG - chr7_2:52156914-52156933 Msa1061810:intron 35.0%
TCATGCAGGTGCAAAAAAAT+TGG + chr7_2:52156949-52156968 None:intergenic 35.0%
! ACTTTCCAAAGTTGCGATTT+TGG + chr7_2:52157117-52157136 None:intergenic 35.0%
! AATCGCAACTTTGGAAAGTT+AGG - chr7_2:52157118-52157137 Msa1061810:intron 35.0%
! ATCGCAACTTTGGAAAGTTA+GGG - chr7_2:52157119-52157138 Msa1061810:intron 35.0%
GATGCTGTTAGCTACTATTA+TGG - chr7_2:52157374-52157393 Msa1061810:CDS 35.0%
TGTGGTTTATTTGATGCTCT+TGG - chr7_2:52157505-52157524 Msa1061810:CDS 35.0%
AAAACTGCACAAAGACAACT+TGG + chr7_2:52156491-52156510 None:intergenic 35.0%
TCAAACGTTGCTAAAATGTC+TGG - chr7_2:52156515-52156534 Msa1061810:CDS 35.0%
TAGCAAAGTTACAGCGTTTA+GGG + chr7_2:52156568-52156587 None:intergenic 35.0%
TTAGCAAAGTTACAGCGTTT+AGG + chr7_2:52156569-52156588 None:intergenic 35.0%
CGACAACTTAAAAGAAACTG+AGG + chr7_2:52156636-52156655 None:intergenic 35.0%
CTAAAATCACAACTTCGTGA+AGG + chr7_2:52156858-52156877 None:intergenic 35.0%
TGCTACAGTTGCAAAACTTA+GGG + chr7_2:52156910-52156929 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG - chr7_2:52156914-52156933 Msa1061810:intron 35.0%
TCATGCAGGTGCAAAAAAAT+TGG + chr7_2:52156949-52156968 None:intergenic 35.0%
! ACTTTCCAAAGTTGCGATTT+TGG + chr7_2:52157117-52157136 None:intergenic 35.0%
! AATCGCAACTTTGGAAAGTT+AGG - chr7_2:52157118-52157137 Msa1061810:intron 35.0%
! ATCGCAACTTTGGAAAGTTA+GGG - chr7_2:52157119-52157138 Msa1061810:intron 35.0%
GATGCTGTTAGCTACTATTA+TGG - chr7_2:52157374-52157393 Msa1061810:CDS 35.0%
TGTGGTTTATTTGATGCTCT+TGG - chr7_2:52157505-52157524 Msa1061810:CDS 35.0%
CAAGGACTACAAAACCAACT+AGG + chr7_2:52156307-52156326 None:intergenic 40.0%
! GTTTTGTAGTCCTTGTTGCA+GGG - chr7_2:52156312-52156331 Msa1061810:three_prime_UTR 40.0%
! ATTCATGGAGTTGAAAGTGC+TGG - chr7_2:52156335-52156354 Msa1061810:three_prime_UTR 40.0%
TGTGCTCAGACTAAGAAACT+TGG - chr7_2:52156458-52156477 Msa1061810:three_prime_UTR 40.0%
GGGATAGTAACAGCAATTTG+AGG + chr7_2:52156548-52156567 None:intergenic 40.0%
TCACAACTTCGTGAAGGTTA+GGG + chr7_2:52156852-52156871 None:intergenic 40.0%
ATCACAACTTCGTGAAGGTT+AGG + chr7_2:52156853-52156872 None:intergenic 40.0%
CTACAGTTGCAAAACTTAGG+GGG + chr7_2:52156908-52156927 None:intergenic 40.0%
GCTACAGTTGCAAAACTTAG+GGG + chr7_2:52156909-52156928 None:intergenic 40.0%
CTGCTACAGTTGCAAAACTT+AGG + chr7_2:52156911-52156930 None:intergenic 40.0%
!! TGCAAAAAAATTGGCCTTGG+AGG + chr7_2:52156940-52156959 None:intergenic 40.0%
! AGGTGCAAAAAAATTGGCCT+TGG + chr7_2:52156943-52156962 None:intergenic 40.0%
ACCGAGTCAAAATTTGCCTT+GGG - chr7_2:52157028-52157047 Msa1061810:intron 40.0%
ACTCTTCCTTGAAAGAGTTG+AGG - chr7_2:52157315-52157334 Msa1061810:intron 40.0%
CAACAACCTCAACTCTTTCA+AGG + chr7_2:52157324-52157343 None:intergenic 40.0%
CAAGGACTACAAAACCAACT+AGG + chr7_2:52156307-52156326 None:intergenic 40.0%
! GTTTTGTAGTCCTTGTTGCA+GGG - chr7_2:52156312-52156331 Msa1061810:three_prime_UTR 40.0%
! ATTCATGGAGTTGAAAGTGC+TGG - chr7_2:52156335-52156354 Msa1061810:three_prime_UTR 40.0%
TGTGCTCAGACTAAGAAACT+TGG - chr7_2:52156458-52156477 Msa1061810:three_prime_UTR 40.0%
GGGATAGTAACAGCAATTTG+AGG + chr7_2:52156548-52156567 None:intergenic 40.0%
TCACAACTTCGTGAAGGTTA+GGG + chr7_2:52156852-52156871 None:intergenic 40.0%
ATCACAACTTCGTGAAGGTT+AGG + chr7_2:52156853-52156872 None:intergenic 40.0%
CTACAGTTGCAAAACTTAGG+GGG + chr7_2:52156908-52156927 None:intergenic 40.0%
GCTACAGTTGCAAAACTTAG+GGG + chr7_2:52156909-52156928 None:intergenic 40.0%
CTGCTACAGTTGCAAAACTT+AGG + chr7_2:52156911-52156930 None:intergenic 40.0%
!! TGCAAAAAAATTGGCCTTGG+AGG + chr7_2:52156940-52156959 None:intergenic 40.0%
! AGGTGCAAAAAAATTGGCCT+TGG + chr7_2:52156943-52156962 None:intergenic 40.0%
ACCGAGTCAAAATTTGCCTT+GGG - chr7_2:52157028-52157047 Msa1061810:intron 40.0%
ACTCTTCCTTGAAAGAGTTG+AGG - chr7_2:52157315-52157334 Msa1061810:intron 40.0%
CAACAACCTCAACTCTTTCA+AGG + chr7_2:52157324-52157343 None:intergenic 40.0%
ATGAAGATGCTGTGCCTAGT+TGG - chr7_2:52156290-52156309 Msa1061810:three_prime_UTR 45.0%
!! GGTTTTGTAGTCCTTGTTGC+AGG - chr7_2:52156311-52156330 Msa1061810:three_prime_UTR 45.0%
!! GTTGAAAGTGCTGGTGAATG+TGG - chr7_2:52156344-52156363 Msa1061810:three_prime_UTR 45.0%
AACTTTGCTAATCGCCCCAT+TGG - chr7_2:52156578-52156597 Msa1061810:intron 45.0%
GTCCGCACTTATAACCAATG+GGG + chr7_2:52156595-52156614 None:intergenic 45.0%
CGTCCGCACTTATAACCAAT+GGG + chr7_2:52156596-52156615 None:intergenic 45.0%
ACGTCCGCACTTATAACCAA+TGG + chr7_2:52156597-52156616 None:intergenic 45.0%
ACAACTTCGTGAAGGTTAGG+GGG + chr7_2:52156850-52156869 None:intergenic 45.0%
CACAACTTCGTGAAGGTTAG+GGG + chr7_2:52156851-52156870 None:intergenic 45.0%
TAACACGTGGCACCTCATAT+AGG - chr7_2:52156988-52157007 Msa1061810:intron 45.0%
AACACGTGGCACCTCATATA+GGG - chr7_2:52156989-52157008 Msa1061810:intron 45.0%
GACCGAGTCAAAATTTGCCT+TGG - chr7_2:52157027-52157046 Msa1061810:intron 45.0%
!!! CCCCAAGGCAAATTTTGACT+CGG + chr7_2:52157032-52157051 None:intergenic 45.0%
CCGAGTCAAAATTTGCCTTG+GGG - chr7_2:52157029-52157048 Msa1061810:intron 45.0%
CGAGTCAAAATTTGCCTTGG+GGG - chr7_2:52157030-52157049 Msa1061810:intron 45.0%
!! TTTTGCACCGGTGACAGTTT+TGG + chr7_2:52157056-52157075 None:intergenic 45.0%
TCACCGGTGCAAAACTTAGA+GGG - chr7_2:52157062-52157081 Msa1061810:intron 45.0%
CATCTTCATAAGACCCTCCA+TGG + chr7_2:52156279-52156298 None:intergenic 45.0%
ATGAAGATGCTGTGCCTAGT+TGG - chr7_2:52156290-52156309 Msa1061810:three_prime_UTR 45.0%
!! GGTTTTGTAGTCCTTGTTGC+AGG - chr7_2:52156311-52156330 Msa1061810:three_prime_UTR 45.0%
!! GTTGAAAGTGCTGGTGAATG+TGG - chr7_2:52156344-52156363 Msa1061810:three_prime_UTR 45.0%
AACTTTGCTAATCGCCCCAT+TGG - chr7_2:52156578-52156597 Msa1061810:intron 45.0%
GTCCGCACTTATAACCAATG+GGG + chr7_2:52156595-52156614 None:intergenic 45.0%
CGTCCGCACTTATAACCAAT+GGG + chr7_2:52156596-52156615 None:intergenic 45.0%
ACGTCCGCACTTATAACCAA+TGG + chr7_2:52156597-52156616 None:intergenic 45.0%
ACAACTTCGTGAAGGTTAGG+GGG + chr7_2:52156850-52156869 None:intergenic 45.0%
CACAACTTCGTGAAGGTTAG+GGG + chr7_2:52156851-52156870 None:intergenic 45.0%
TAACACGTGGCACCTCATAT+AGG - chr7_2:52156988-52157007 Msa1061810:intron 45.0%
AACACGTGGCACCTCATATA+GGG - chr7_2:52156989-52157008 Msa1061810:intron 45.0%
GACCGAGTCAAAATTTGCCT+TGG - chr7_2:52157027-52157046 Msa1061810:intron 45.0%
!!! CCCCAAGGCAAATTTTGACT+CGG + chr7_2:52157032-52157051 None:intergenic 45.0%
CCGAGTCAAAATTTGCCTTG+GGG - chr7_2:52157029-52157048 Msa1061810:intron 45.0%
CGAGTCAAAATTTGCCTTGG+GGG - chr7_2:52157030-52157049 Msa1061810:intron 45.0%
!! TTTTGCACCGGTGACAGTTT+TGG + chr7_2:52157056-52157075 None:intergenic 45.0%
TCACCGGTGCAAAACTTAGA+GGG - chr7_2:52157062-52157081 Msa1061810:intron 45.0%
GTCCTTGTTGCAGGGATTCA+TGG - chr7_2:52156320-52156339 Msa1061810:three_prime_UTR 50.0%
CTCCATGAATCCCTGCAACA+AGG + chr7_2:52156325-52156344 None:intergenic 50.0%
!! AGTGCTGGTGAATGTGGAAG+AGG - chr7_2:52156350-52156369 Msa1061810:three_prime_UTR 50.0%
TCTTGTGCTGCACTTGCACA+AGG + chr7_2:52156410-52156429 None:intergenic 50.0%
! CGCCCCATTGGTTATAAGTG+CGG - chr7_2:52156590-52156609 Msa1061810:intron 50.0%
!! TGTAGCAGTTTTGGCCTCCA+AGG - chr7_2:52156923-52156942 Msa1061810:intron 50.0%
CTGATGTGGCACCCTATATG+AGG + chr7_2:52157003-52157022 None:intergenic 50.0%
GTCACCGGTGCAAAACTTAG+AGG - chr7_2:52157061-52157080 Msa1061810:intron 50.0%
GGAGGCCAAAATCGCAACTT+TGG - chr7_2:52157109-52157128 Msa1061810:intron 50.0%
GTGTACACAAGTGAGCTGCT+AGG + chr7_2:52157460-52157479 None:intergenic 50.0%
GTCCTTGTTGCAGGGATTCA+TGG - chr7_2:52156320-52156339 Msa1061810:three_prime_UTR 50.0%
CTCCATGAATCCCTGCAACA+AGG + chr7_2:52156325-52156344 None:intergenic 50.0%
!! AGTGCTGGTGAATGTGGAAG+AGG - chr7_2:52156350-52156369 Msa1061810:three_prime_UTR 50.0%
TCTTGTGCTGCACTTGCACA+AGG + chr7_2:52156410-52156429 None:intergenic 50.0%
! CGCCCCATTGGTTATAAGTG+CGG - chr7_2:52156590-52156609 Msa1061810:intron 50.0%
!! TGTAGCAGTTTTGGCCTCCA+AGG - chr7_2:52156923-52156942 Msa1061810:intron 50.0%
CTGATGTGGCACCCTATATG+AGG + chr7_2:52157003-52157022 None:intergenic 50.0%
GTCACCGGTGCAAAACTTAG+AGG - chr7_2:52157061-52157080 Msa1061810:intron 50.0%
GGAGGCCAAAATCGCAACTT+TGG - chr7_2:52157109-52157128 Msa1061810:intron 50.0%
GTGTACACAAGTGAGCTGCT+AGG + chr7_2:52157460-52157479 None:intergenic 50.0%
!! TGACTCGGTCTACGCTGATG+TGG + chr7_2:52157017-52157036 None:intergenic 55.0%
TTGGGGGCCAAAACTGTCAC+CGG - chr7_2:52157046-52157065 Msa1061810:intron 55.0%
! CCGCCCTCTAAGTTTTGCAC+CGG + chr7_2:52157068-52157087 None:intergenic 55.0%
CCGGTGCAAAACTTAGAGGG+CGG - chr7_2:52157065-52157084 Msa1061810:intron 55.0%
!! TGACTCGGTCTACGCTGATG+TGG + chr7_2:52157017-52157036 None:intergenic 55.0%
TTGGGGGCCAAAACTGTCAC+CGG - chr7_2:52157046-52157065 Msa1061810:intron 55.0%
! CCGCCCTCTAAGTTTTGCAC+CGG + chr7_2:52157068-52157087 None:intergenic 55.0%
CCGGTGCAAAACTTAGAGGG+CGG - chr7_2:52157065-52157084 Msa1061810:intron 55.0%
!! GGTGACAGTTTTGGCCCCCA+AGG + chr7_2:52157047-52157066 None:intergenic 60.0%
!! GGTGACAGTTTTGGCCCCCA+AGG + chr7_2:52157047-52157066 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 52156278 52157597 52156278 ID=Msa1061810;Name=Msa1061810
chr7_2 mRNA 52156278 52157597 52156278 ID=Msa1061810-mRNA-1;Parent=Msa1061810;Name=Msa1061810-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0.5|1|1|1|2|222|114
chr7_2 exon 52156278 52156565 52156278 ID=Msa1061810-mRNA-1:exon:9415;Parent=Msa1061810-mRNA-1
chr7_2 exon 52157319 52157597 52157319 ID=Msa1061810-mRNA-1:exon:9414;Parent=Msa1061810-mRNA-1
chr7_2 CDS 52157319 52157597 52157319 ID=Msa1061810-mRNA-1:cds;Parent=Msa1061810-mRNA-1
chr7_2 CDS 52156500 52156565 52156500 ID=Msa1061810-mRNA-1:cds;Parent=Msa1061810-mRNA-1
chr7_2 three_prime_UTR 52156278 52156499 52156278 ID=Msa1061810-mRNA-1:three_prime_utr;Parent=Msa1061810-mRNA-1
Gene Sequence

>Msa1061810

ATGGAGGGTCTTATGAAGATGCTGTGCCTAGTTGGTTTTGTAGTCCTTGTTGCAGGGATTCATGGAGTTGAAAGTGCTGGTGAATGTGGAAGAGGTACTACACCAGATAATGAAGCTTTTAAGCTAGCTCCTTGTGCAAGTGCAGCACAAGATGAAAATGCTAGTGTCTCACAAAGTTGTTGTGCTCAGACTAAGAAACTTGGTCAGAATCCAAGTTGTCTTTGTGCAGTTTTGCTCTCAAACGTTGCTAAAATGTCTGGTGTTAATCCTCAAATTGCTCTTACACTCTTCCTTGAAAGAGTTGAGGTTGTTGCTGAAAACAAACATAAATGGGATATGCATTGA
Protein sequence

>Msa1061810

MEGLMKMLCLVGFVVLVAGIHGVESAGECGRGTTPDNEAFKLAPCASAAQDENASVSQSCCAQTKKLGQNPSCLCAVLLSNVAKMSGVNPQIALTLFLERVEVVAENKHKWDMH*