AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1061790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061790 MtrunA17_Chr7g0240471 95.833 96 4 0 1 96 1 96 1.57e-63 188
Msa1061790 MtrunA17_Chr7g0240451 86.458 96 13 0 1 96 1 96 2.29e-57 173
Msa1061790 MtrunA17_Chr7g0240441 65.574 61 5 1 36 96 29 73 3.29e-18 73.2
Msa1061790 MtrunA17_Chr8g0368861 45.946 74 38 2 24 96 27 99 1.25e-12 59.7
Msa1061790 MtrunA17_Chr8g0368831 44.595 74 39 2 24 96 35 107 4.94e-12 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061790 AT3G53980.2 62.162 74 27 1 23 96 21 93 5.38e-28 99.0
Msa1061790 AT3G53980.1 62.162 74 27 1 23 96 21 93 5.38e-28 99.0
Msa1061790 AT5G05960.1 53.333 90 35 2 7 96 13 95 1.67e-26 95.5
Msa1061790 AT2G37870.1 42.353 85 47 2 11 94 9 92 2.45e-14 64.3

Find 24 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTGAAAACAAACATAAA+TGG 0.229535 7_2:-52145016 Msa1061790:CDS
AGCTTAAATGCTTCCATATC+TGG 0.265044 7_2:+52145975 None:intergenic
GATGCTGTTAGCTACTATTA+TGG 0.319174 7_2:-52144983 Msa1061790:three_prime_UTR
CAACAACCTCAACTCTTTCA+AGG 0.398597 7_2:+52145036 None:intergenic
TGCTGAAAACAAACATAAAT+GGG 0.434655 7_2:-52145015 Msa1061790:CDS
TCAAACGTTGCTAAAATGTC+TGG 0.462464 7_2:-52145840 Msa1061790:CDS
AAGGGGTACTACACCAGATA+TGG 0.470603 7_2:-52145988 Msa1061790:CDS
GGATAGTAACAGCAATTTGA+GGG 0.472152 7_2:+52145811 None:intergenic
ATGAAGATGCTGTGCCTAGT+TGG 0.489536 7_2:-52146065 Msa1061790:CDS
GTGTACACAAGTGAGCTGTT+AGG 0.505231 7_2:+52144900 None:intergenic
GGGATAGTAACAGCAATTTG+AGG 0.508534 7_2:+52145810 None:intergenic
AATAAAACATTCTCTTTCTG+TGG 0.509234 7_2:-52144870 Msa1061790:three_prime_UTR
GTTGAAAGTGCAGGTGAATG+TGG 0.515102 7_2:-52146011 Msa1061790:CDS
TCTTGTGCTGCACTTGCACA+AGG 0.541464 7_2:+52145948 None:intergenic
AAAGTGCAGGTGAATGTGGA+AGG 0.549386 7_2:-52146007 Msa1061790:CDS
TTTCTTGTTTGTTTATACTG+TGG 0.557319 7_2:-52144929 Msa1061790:three_prime_UTR
ACTCTTCCTTGAAAGAGTTG+AGG 0.566469 7_2:-52145042 Msa1061790:CDS
AAAACTGCACAAAGACAACT+TGG 0.590774 7_2:+52145867 None:intergenic
ATTCATAGAGTTGAAAGTGC+AGG 0.591870 7_2:-52146020 Msa1061790:CDS
TGTGCTCAGACTAAGAAACT+TGG 0.591888 7_2:-52145897 Msa1061790:CDS
CAAGAACTACAAAACCAACT+AGG 0.604153 7_2:+52146051 None:intergenic
AATACAACACAACTAAGTTG+TGG 0.625133 7_2:+52144957 None:intergenic
AGTGCAGGTGAATGTGGAAG+GGG 0.630405 7_2:-52146005 Msa1061790:CDS
AAGTGCAGGTGAATGTGGAA+GGG 0.641454 7_2:-52146006 Msa1061790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATAAATATAAACGAAA+TGG + chr7_2:52145223-52145242 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG + chr7_2:52145436-52145455 None:intergenic 15.0%
!!! ATTTTGTAGTTTTTTTTCTT+AGG + chr7_2:52145437-52145456 None:intergenic 15.0%
!!! TTTTATTTTAAAATTCATGC+AGG + chr7_2:52145517-52145536 None:intergenic 15.0%
!! AAAATAAAAAAAATAACACG+TGG - chr7_2:52145528-52145547 Msa1061790:intron 15.0%
!!! TTTAGTAATTTTTTTTCCTT+AGG - chr7_2:52145641-52145660 Msa1061790:intron 15.0%
!!! TCAATTAAAATGTTTTAGTA+GGG + chr7_2:52146073-52146092 None:intergenic 15.0%
!!! ATCAATTAAAATGTTTTAGT+AGG + chr7_2:52146074-52146093 None:intergenic 15.0%
!! AAGAATAAATATAAACGAAA+TGG + chr7_2:52145223-52145242 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG + chr7_2:52145436-52145455 None:intergenic 15.0%
!!! ATTTTGTAGTTTTTTTTCTT+AGG + chr7_2:52145437-52145456 None:intergenic 15.0%
!!! TTTTATTTTAAAATTCATGC+AGG + chr7_2:52145517-52145536 None:intergenic 15.0%
!! AAAATAAAAAAAATAACACG+TGG - chr7_2:52145528-52145547 Msa1061790:intron 15.0%
!!! TTTAGTAATTTTTTTTCCTT+AGG - chr7_2:52145641-52145660 Msa1061790:intron 15.0%
!!! TCAATTAAAATGTTTTAGTA+GGG + chr7_2:52146073-52146092 None:intergenic 15.0%
!!! ATCAATTAAAATGTTTTAGT+AGG + chr7_2:52146074-52146093 None:intergenic 15.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG + chr7_2:52145435-52145454 None:intergenic 20.0%
!! AACAACAAAAAAATGTGAAA+CGG - chr7_2:52145734-52145753 Msa1061790:intron 20.0%
!!! CTATTTGTTAATTTTCTTGA+TGG - chr7_2:52145794-52145813 Msa1061790:intron 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG + chr7_2:52145435-52145454 None:intergenic 20.0%
!! AACAACAAAAAAATGTGAAA+CGG - chr7_2:52145734-52145753 Msa1061790:intron 20.0%
!!! CTATTTGTTAATTTTCTTGA+TGG - chr7_2:52145794-52145813 Msa1061790:intron 20.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG + chr7_2:52145434-52145453 None:intergenic 25.0%
!!! AGTAATTTTTTTTCCTTAGG+AGG - chr7_2:52145644-52145663 Msa1061790:intron 25.0%
! TTGCTGAAAACAAACATAAA+TGG - chr7_2:52145889-52145908 Msa1061790:CDS 25.0%
! TGCTGAAAACAAACATAAAT+GGG - chr7_2:52145890-52145909 Msa1061790:CDS 25.0%
!! TTTCTTGTTTGTTTATACTG+TGG - chr7_2:52145976-52145995 Msa1061790:CDS 25.0%
!!! AGAGAATGTTTTATTCATGA+GGG + chr7_2:52146030-52146049 None:intergenic 25.0%
!!! AAGAGAATGTTTTATTCATG+AGG + chr7_2:52146031-52146050 None:intergenic 25.0%
! AATAAAACATTCTCTTTCTG+TGG - chr7_2:52146035-52146054 Msa1061790:CDS 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG + chr7_2:52145434-52145453 None:intergenic 25.0%
!!! AGTAATTTTTTTTCCTTAGG+AGG - chr7_2:52145644-52145663 Msa1061790:intron 25.0%
! TTGCTGAAAACAAACATAAA+TGG - chr7_2:52145889-52145908 Msa1061790:CDS 25.0%
! TGCTGAAAACAAACATAAAT+GGG - chr7_2:52145890-52145909 Msa1061790:CDS 25.0%
!! TTTCTTGTTTGTTTATACTG+TGG - chr7_2:52145976-52145995 Msa1061790:CDS 25.0%
!!! AGAGAATGTTTTATTCATGA+GGG + chr7_2:52146030-52146049 None:intergenic 25.0%
!!! AAGAGAATGTTTTATTCATG+AGG + chr7_2:52146031-52146050 None:intergenic 25.0%
! AATAAAACATTCTCTTTCTG+TGG - chr7_2:52146035-52146054 Msa1061790:CDS 25.0%
GACAACTTAAAAGAAACTGA+GGG + chr7_2:52145185-52145204 None:intergenic 30.0%
! AATCGCAACTTTGAAAAGTT+AGG - chr7_2:52145671-52145690 Msa1061790:intron 30.0%
! ATCGCAACTTTGAAAAGTTA+GGG - chr7_2:52145672-52145691 Msa1061790:intron 30.0%
AATACAACACAACTAAGTTG+TGG + chr7_2:52145951-52145970 None:intergenic 30.0%
GACAACTTAAAAGAAACTGA+GGG + chr7_2:52145185-52145204 None:intergenic 30.0%
! AATCGCAACTTTGAAAAGTT+AGG - chr7_2:52145671-52145690 Msa1061790:intron 30.0%
! ATCGCAACTTTGAAAAGTTA+GGG - chr7_2:52145672-52145691 Msa1061790:intron 30.0%
AATACAACACAACTAAGTTG+TGG + chr7_2:52145951-52145970 None:intergenic 30.0%
CAAGAACTACAAAACCAACT+AGG + chr7_2:52144857-52144876 None:intergenic 35.0%
! GTTTTGTAGTTCTTGTTGCA+GGG - chr7_2:52144862-52144881 Msa1061790:three_prime_UTR 35.0%
! ATTCATAGAGTTGAAAGTGC+AGG - chr7_2:52144885-52144904 Msa1061790:three_prime_UTR 35.0%
AGCTTAAATGCTTCCATATC+TGG + chr7_2:52144933-52144952 None:intergenic 35.0%
AAAACTGCACAAAGACAACT+TGG + chr7_2:52145041-52145060 None:intergenic 35.0%
TCAAACGTTGCTAAAATGTC+TGG - chr7_2:52145065-52145084 Msa1061790:intron 35.0%
GGATAGTAACAGCAATTTGA+GGG + chr7_2:52145097-52145116 None:intergenic 35.0%
TAGCAAAGTTACAGCGTTTA+GGG + chr7_2:52145118-52145137 None:intergenic 35.0%
TTAGCAAAGTTACAGCGTTT+AGG + chr7_2:52145119-52145138 None:intergenic 35.0%
CGACAACTTAAAAGAAACTG+AGG + chr7_2:52145186-52145205 None:intergenic 35.0%
CTAAAATCACAACTTCGTGA+AGG + chr7_2:52145411-52145430 None:intergenic 35.0%
CTACAGTTGCAAAACTTAGA+GGG + chr7_2:52145462-52145481 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG - chr7_2:52145468-52145487 Msa1061790:intron 35.0%
!! TGCAAAAAAATTGGCCTTTG+GGG + chr7_2:52145494-52145513 None:intergenic 35.0%
!! GTGCAAAAAAATTGGCCTTT+GGG + chr7_2:52145495-52145514 None:intergenic 35.0%
TCATGCAGGTGCAAAAAAAT+TGG + chr7_2:52145503-52145522 None:intergenic 35.0%
GATGCTGTTAGCTACTATTA+TGG - chr7_2:52145922-52145941 Msa1061790:CDS 35.0%
CAAGAACTACAAAACCAACT+AGG + chr7_2:52144857-52144876 None:intergenic 35.0%
! GTTTTGTAGTTCTTGTTGCA+GGG - chr7_2:52144862-52144881 Msa1061790:three_prime_UTR 35.0%
! ATTCATAGAGTTGAAAGTGC+AGG - chr7_2:52144885-52144904 Msa1061790:three_prime_UTR 35.0%
AGCTTAAATGCTTCCATATC+TGG + chr7_2:52144933-52144952 None:intergenic 35.0%
AAAACTGCACAAAGACAACT+TGG + chr7_2:52145041-52145060 None:intergenic 35.0%
TCAAACGTTGCTAAAATGTC+TGG - chr7_2:52145065-52145084 Msa1061790:intron 35.0%
GGATAGTAACAGCAATTTGA+GGG + chr7_2:52145097-52145116 None:intergenic 35.0%
TAGCAAAGTTACAGCGTTTA+GGG + chr7_2:52145118-52145137 None:intergenic 35.0%
TTAGCAAAGTTACAGCGTTT+AGG + chr7_2:52145119-52145138 None:intergenic 35.0%
CGACAACTTAAAAGAAACTG+AGG + chr7_2:52145186-52145205 None:intergenic 35.0%
CTAAAATCACAACTTCGTGA+AGG + chr7_2:52145411-52145430 None:intergenic 35.0%
CTACAGTTGCAAAACTTAGA+GGG + chr7_2:52145462-52145481 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG - chr7_2:52145468-52145487 Msa1061790:intron 35.0%
!! TGCAAAAAAATTGGCCTTTG+GGG + chr7_2:52145494-52145513 None:intergenic 35.0%
!! GTGCAAAAAAATTGGCCTTT+GGG + chr7_2:52145495-52145514 None:intergenic 35.0%
TCATGCAGGTGCAAAAAAAT+TGG + chr7_2:52145503-52145522 None:intergenic 35.0%
GATGCTGTTAGCTACTATTA+TGG - chr7_2:52145922-52145941 Msa1061790:CDS 35.0%
!! GGTTTTGTAGTTCTTGTTGC+AGG - chr7_2:52144861-52144880 Msa1061790:three_prime_UTR 40.0%
TGTGCTCAGACTAAGAAACT+TGG - chr7_2:52145008-52145027 Msa1061790:CDS 40.0%
GGGATAGTAACAGCAATTTG+AGG + chr7_2:52145098-52145117 None:intergenic 40.0%
TCACAACTTCGTGAAGGTTA+GGG + chr7_2:52145405-52145424 None:intergenic 40.0%
ATCACAACTTCGTGAAGGTT+AGG + chr7_2:52145406-52145425 None:intergenic 40.0%
GCTACAGTTGCAAAACTTAG+AGG + chr7_2:52145463-52145482 None:intergenic 40.0%
!! GGTGCAAAAAAATTGGCCTT+TGG + chr7_2:52145496-52145515 None:intergenic 40.0%
! GCAACTTTGAAAAGTTAGGG+AGG - chr7_2:52145675-52145694 Msa1061790:intron 40.0%
ACTCTTCCTTGAAAGAGTTG+AGG - chr7_2:52145863-52145882 Msa1061790:CDS 40.0%
CAACAACCTCAACTCTTTCA+AGG + chr7_2:52145872-52145891 None:intergenic 40.0%
!! GGTTTTGTAGTTCTTGTTGC+AGG - chr7_2:52144861-52144880 Msa1061790:three_prime_UTR 40.0%
TGTGCTCAGACTAAGAAACT+TGG - chr7_2:52145008-52145027 Msa1061790:CDS 40.0%
GGGATAGTAACAGCAATTTG+AGG + chr7_2:52145098-52145117 None:intergenic 40.0%
TCACAACTTCGTGAAGGTTA+GGG + chr7_2:52145405-52145424 None:intergenic 40.0%
ATCACAACTTCGTGAAGGTT+AGG + chr7_2:52145406-52145425 None:intergenic 40.0%
GCTACAGTTGCAAAACTTAG+AGG + chr7_2:52145463-52145482 None:intergenic 40.0%
!! GGTGCAAAAAAATTGGCCTT+TGG + chr7_2:52145496-52145515 None:intergenic 40.0%
! GCAACTTTGAAAAGTTAGGG+AGG - chr7_2:52145675-52145694 Msa1061790:intron 40.0%
ACTCTTCCTTGAAAGAGTTG+AGG - chr7_2:52145863-52145882 Msa1061790:CDS 40.0%
CAACAACCTCAACTCTTTCA+AGG + chr7_2:52145872-52145891 None:intergenic 40.0%
ATGAAGATGCTGTGCCTAGT+TGG - chr7_2:52144840-52144859 Msa1061790:three_prime_UTR 45.0%
! GTTGAAAGTGCAGGTGAATG+TGG - chr7_2:52144894-52144913 Msa1061790:three_prime_UTR 45.0%
AAAGTGCAGGTGAATGTGGA+AGG - chr7_2:52144898-52144917 Msa1061790:three_prime_UTR 45.0%
AAGTGCAGGTGAATGTGGAA+GGG - chr7_2:52144899-52144918 Msa1061790:three_prime_UTR 45.0%
!! AAGGGGTACTACACCAGATA+TGG - chr7_2:52144917-52144936 Msa1061790:three_prime_UTR 45.0%
AACTTTGCTAATCGCCCCAT+TGG - chr7_2:52145128-52145147 Msa1061790:intron 45.0%
GTCCGCACTTATAACCAATG+GGG + chr7_2:52145145-52145164 None:intergenic 45.0%
CGTCCGCACTTATAACCAAT+GGG + chr7_2:52145146-52145165 None:intergenic 45.0%
ACGTCCGCACTTATAACCAA+TGG + chr7_2:52145147-52145166 None:intergenic 45.0%
ACAACTTCGTGAAGGTTAGG+GGG + chr7_2:52145403-52145422 None:intergenic 45.0%
CACAACTTCGTGAAGGTTAG+GGG + chr7_2:52145404-52145423 None:intergenic 45.0%
TAACACGTGGCACCTCATAT+AGG - chr7_2:52145541-52145560 Msa1061790:intron 45.0%
AACACGTGGCACCTCATATA+GGG - chr7_2:52145542-52145561 Msa1061790:intron 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - chr7_2:52145574-52145593 Msa1061790:intron 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG - chr7_2:52145581-52145600 Msa1061790:intron 45.0%
!! GTTGCGATTTTGACCTCCTA+AGG + chr7_2:52145660-52145679 None:intergenic 45.0%
GTGTACACAAGTGAGCTGTT+AGG + chr7_2:52146008-52146027 None:intergenic 45.0%
ATGAAGATGCTGTGCCTAGT+TGG - chr7_2:52144840-52144859 Msa1061790:three_prime_UTR 45.0%
! GTTGAAAGTGCAGGTGAATG+TGG - chr7_2:52144894-52144913 Msa1061790:three_prime_UTR 45.0%
AAAGTGCAGGTGAATGTGGA+AGG - chr7_2:52144898-52144917 Msa1061790:three_prime_UTR 45.0%
AAGTGCAGGTGAATGTGGAA+GGG - chr7_2:52144899-52144918 Msa1061790:three_prime_UTR 45.0%
!! AAGGGGTACTACACCAGATA+TGG - chr7_2:52144917-52144936 Msa1061790:three_prime_UTR 45.0%
AACTTTGCTAATCGCCCCAT+TGG - chr7_2:52145128-52145147 Msa1061790:intron 45.0%
GTCCGCACTTATAACCAATG+GGG + chr7_2:52145145-52145164 None:intergenic 45.0%
CGTCCGCACTTATAACCAAT+GGG + chr7_2:52145146-52145165 None:intergenic 45.0%
ACGTCCGCACTTATAACCAA+TGG + chr7_2:52145147-52145166 None:intergenic 45.0%
ACAACTTCGTGAAGGTTAGG+GGG + chr7_2:52145403-52145422 None:intergenic 45.0%
CACAACTTCGTGAAGGTTAG+GGG + chr7_2:52145404-52145423 None:intergenic 45.0%
TAACACGTGGCACCTCATAT+AGG - chr7_2:52145541-52145560 Msa1061790:intron 45.0%
AACACGTGGCACCTCATATA+GGG - chr7_2:52145542-52145561 Msa1061790:intron 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - chr7_2:52145574-52145593 Msa1061790:intron 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG - chr7_2:52145581-52145600 Msa1061790:intron 45.0%
!! GTTGCGATTTTGACCTCCTA+AGG + chr7_2:52145660-52145679 None:intergenic 45.0%
GTGTACACAAGTGAGCTGTT+AGG + chr7_2:52146008-52146027 None:intergenic 45.0%
!! TATATTAATATATGAAAAAA+AGG - chr7_2:52145360-52145379 Msa1061790:intron 5.0%
!! TATATTAATATATGAAAAAA+AGG - chr7_2:52145360-52145379 Msa1061790:intron 5.0%
AGTGCAGGTGAATGTGGAAG+GGG - chr7_2:52144900-52144919 Msa1061790:three_prime_UTR 50.0%
TCTTGTGCTGCACTTGCACA+AGG + chr7_2:52144960-52144979 None:intergenic 50.0%
! CGCCCCATTGGTTATAAGTG+CGG - chr7_2:52145140-52145159 Msa1061790:intron 50.0%
!! TGTAGCAGTTTTGGCCCCAA+AGG - chr7_2:52145477-52145496 Msa1061790:intron 50.0%
CTGATGTGGCACCCTATATG+AGG + chr7_2:52145556-52145575 None:intergenic 50.0%
! GACCGAGTCAAAATTGGCCT+TGG - chr7_2:52145580-52145599 Msa1061790:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG + chr7_2:52145585-52145604 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG - chr7_2:52145582-52145601 Msa1061790:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG - chr7_2:52145583-52145602 Msa1061790:intron 50.0%
!! TTTTGCACCGGTGGCAGTTT+TGG + chr7_2:52145609-52145628 None:intergenic 50.0%
CCACCGGTGCAAAACTTAGA+GGG - chr7_2:52145615-52145634 Msa1061790:intron 50.0%
AGTGCAGGTGAATGTGGAAG+GGG - chr7_2:52144900-52144919 Msa1061790:three_prime_UTR 50.0%
TCTTGTGCTGCACTTGCACA+AGG + chr7_2:52144960-52144979 None:intergenic 50.0%
! CGCCCCATTGGTTATAAGTG+CGG - chr7_2:52145140-52145159 Msa1061790:intron 50.0%
!! TGTAGCAGTTTTGGCCCCAA+AGG - chr7_2:52145477-52145496 Msa1061790:intron 50.0%
CTGATGTGGCACCCTATATG+AGG + chr7_2:52145556-52145575 None:intergenic 50.0%
! GACCGAGTCAAAATTGGCCT+TGG - chr7_2:52145580-52145599 Msa1061790:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG + chr7_2:52145585-52145604 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG - chr7_2:52145582-52145601 Msa1061790:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG - chr7_2:52145583-52145602 Msa1061790:intron 50.0%
!! TTTTGCACCGGTGGCAGTTT+TGG + chr7_2:52145609-52145628 None:intergenic 50.0%
CCACCGGTGCAAAACTTAGA+GGG - chr7_2:52145615-52145634 Msa1061790:intron 50.0%
!! TGACTCGGTCTACGCTGATG+TGG + chr7_2:52145570-52145589 None:intergenic 55.0%
GCCACCGGTGCAAAACTTAG+AGG - chr7_2:52145614-52145633 Msa1061790:intron 55.0%
! CCCTCTAAGTTTTGCACCGG+TGG + chr7_2:52145618-52145637 None:intergenic 55.0%
! CCGCCCTCTAAGTTTTGCAC+CGG + chr7_2:52145621-52145640 None:intergenic 55.0%
CCGGTGCAAAACTTAGAGGG+CGG - chr7_2:52145618-52145637 Msa1061790:intron 55.0%
!! TGACTCGGTCTACGCTGATG+TGG + chr7_2:52145570-52145589 None:intergenic 55.0%
GCCACCGGTGCAAAACTTAG+AGG - chr7_2:52145614-52145633 Msa1061790:intron 55.0%
! CCCTCTAAGTTTTGCACCGG+TGG + chr7_2:52145618-52145637 None:intergenic 55.0%
! CCGCCCTCTAAGTTTTGCAC+CGG + chr7_2:52145621-52145640 None:intergenic 55.0%
CCGGTGCAAAACTTAGAGGG+CGG - chr7_2:52145618-52145637 Msa1061790:intron 55.0%
TTGGGGGCCAAAACTGCCAC+CGG - chr7_2:52145599-52145618 Msa1061790:intron 60.0%
TTGGGGGCCAAAACTGCCAC+CGG - chr7_2:52145599-52145618 Msa1061790:intron 60.0%
!! GGTGGCAGTTTTGGCCCCCA+AGG + chr7_2:52145600-52145619 None:intergenic 65.0%
!! GGTGGCAGTTTTGGCCCCCA+AGG + chr7_2:52145600-52145619 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 52144828 52146099 52144828 ID=Msa1061790;Name=Msa1061790
chr7_2 mRNA 52144828 52146099 52144828 ID=Msa1061790-mRNA-1;Parent=Msa1061790;Name=Msa1061790-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0.5|1|1|1|2|176|114
chr7_2 exon 52144828 52145069 52144828 ID=Msa1061790-mRNA-1:exon:9417;Parent=Msa1061790-mRNA-1
chr7_2 exon 52145821 52146099 52145821 ID=Msa1061790-mRNA-1:exon:9416;Parent=Msa1061790-mRNA-1
chr7_2 CDS 52145821 52146099 52145821 ID=Msa1061790-mRNA-1:cds;Parent=Msa1061790-mRNA-1
chr7_2 CDS 52145004 52145069 52145004 ID=Msa1061790-mRNA-1:cds;Parent=Msa1061790-mRNA-1
chr7_2 three_prime_UTR 52144828 52145003 52144828 ID=Msa1061790-mRNA-1:three_prime_utr;Parent=Msa1061790-mRNA-1
Gene Sequence

>Msa1061790

ATGGAGGGTCTTATGAAGATGCTGTGCCTAGTTGGTTTTGTAGTTCTTGTTGCAGGGATTCATAGAGTTGAAAGTGCAGGTGAATGTGGAAGGGGTACTACACCAGATATGGAAGCATTTAAGCTTGCTCCTTGTGCAAGTGCAGCACAAGATGAAAATGCTAGTGTCTCACAAAGTTGTTGTGCTCAGACTAAGAAACTTGGTCAGAATCCAAGTTGTCTTTGTGCAGTTTTGCTCTCAAACGTTGCTAAAATGTCTGGTGTTAACCCTCAAATTGCTCTTACACTCTTCCTTGAAAGAGTTGAGGTTGTTGCTGAAAACAAACATAAATGGGATATGCATTGA
Protein sequence

>Msa1061790

MEGLMKMLCLVGFVVLVAGIHRVESAGECGRGTTPDMEAFKLAPCASAAQDENASVSQSCCAQTKKLGQNPSCLCAVLLSNVAKMSGVNPQIALTLFLERVEVVAENKHKWDMH*