AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254470 MtrunA17_Chr8g0371601 97.550 694 17 0 1 694 1 694 0.0 1408
Msa1254470 MtrunA17_Chr5g0405701 78.895 706 133 5 4 694 28 732 0.0 1134
Msa1254470 MtrunA17_Chr1g0197591 27.725 422 275 9 280 686 197 603 7.64e-35 142
Msa1254470 MtrunA17_Chr1g0194741 28.606 416 248 12 300 687 234 628 3.16e-34 139
Msa1254470 MtrunA17_Chr8g0377481 38.298 188 115 1 424 611 345 531 3.98e-28 121
Msa1254470 MtrunA17_Chr8g0392301 33.091 275 134 5 460 693 372 637 1.03e-27 119
Msa1254470 MtrunA17_Chr3g0122391 30.496 282 180 4 427 693 396 676 4.89e-27 117
Msa1254470 MtrunA17_Chr5g0447641 29.474 285 183 6 426 693 572 855 1.88e-23 106
Msa1254470 MtrunA17_Chr4g0013831 30.088 226 136 3 461 686 334 537 1.11e-22 103
Msa1254470 MtrunA17_Chr7g0269631 30.472 233 140 3 461 693 334 544 1.23e-22 102
Msa1254470 MtrunA17_Chr3g0136601 29.707 239 147 5 474 693 373 609 3.20e-18 89.4
Msa1254470 MtrunA17_Chr1g0150511 30.734 218 135 6 405 609 298 512 8.99e-17 84.7
Msa1254470 MtrunA17_Chr1g0186431 29.496 139 97 1 461 599 355 492 5.83e-13 72.4
Msa1254470 MtrunA17_Chr7g0274831 26.829 164 119 1 460 623 364 526 1.43e-12 71.2
Msa1254470 MtrunA17_Chr1g0190021 25.000 168 125 1 460 627 360 526 4.09e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254470 AT2G17820.1 70.732 697 187 6 8 693 30 720 0.0 1005
Msa1254470 AT2G47430.1 33.007 306 188 5 395 686 318 620 2.88e-40 159
Msa1254470 AT2G01830.2 32.492 317 181 6 405 693 406 717 1.51e-34 141
Msa1254470 AT2G01830.1 32.492 317 181 6 405 693 383 694 1.63e-34 141
Msa1254470 AT2G01830.4 32.492 317 181 6 405 693 383 694 1.63e-34 141
Msa1254470 AT2G01830.6 32.492 317 181 6 405 693 383 694 1.63e-34 141
Msa1254470 AT2G01830.3 32.492 317 181 6 405 693 383 694 1.63e-34 141
Msa1254470 AT2G01830.5 32.492 317 181 6 405 693 395 706 2.47e-34 141
Msa1254470 AT1G27320.1 32.673 303 184 5 405 693 384 680 1.26e-31 132
Msa1254470 AT5G35750.1 31.488 289 175 6 424 693 540 824 1.15e-28 123
Msa1254470 AT1G66340.1 30.043 233 137 3 461 693 333 539 8.34e-25 110
Msa1254470 AT2G40940.1 29.915 234 142 3 460 693 332 543 8.14e-19 91.3
Msa1254470 AT5G10720.1 38.129 139 84 2 474 612 369 505 3.32e-18 89.7

Find 255 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAAGATGATTCATATTT+TGG 0.110114 8_2:+52590136 Msa1254470:three_prime_UTR
ACCTCATATTTGCAAGAAAT+TGG 0.164195 8_2:-52587572 None:intergenic
CAGAAAAGTAACTGCTTATT+AGG 0.180290 8_2:+52590374 Msa1254470:three_prime_UTR
TCACTATCACCATAAGAATT+TGG 0.199041 8_2:-52588454 None:intergenic
GTTCTCATGTTGCTTCATTT+TGG 0.222254 8_2:-52588521 None:intergenic
CTTGCGAAGCTCCGTCTTTA+CGG 0.241218 8_2:-52590075 None:intergenic
CCAAGATGTTATTCAGTAAA+TGG 0.249032 8_2:-52587832 None:intergenic
GTTTGGAGATACTCTGAATT+TGG 0.267523 8_2:-52584185 None:intergenic
TAGGTATTGACCCGAGTAAA+TGG 0.298638 8_2:+52588851 Msa1254470:intron
GCCTCATATCCATCCATCTT+TGG 0.303088 8_2:-52590866 None:intergenic
TTCAGCAGCATTGCCGGTTT+GGG 0.306475 8_2:+52586240 Msa1254470:CDS
CATACCAAGAAAGCATATAA+TGG 0.311598 8_2:+52587359 Msa1254470:CDS
GAAATAAGGAAATCAGAAAT+TGG 0.311793 8_2:+52590896 Msa1254470:three_prime_UTR
CTAGGTACACAACATATAAA+AGG 0.316563 8_2:+52584290 Msa1254470:five_prime_UTR
AGCTATACTTATTGAGTCTT+CGG 0.317592 8_2:-52586143 None:intergenic
AAAGAAACCTGAGCTTAAAA+TGG 0.319263 8_2:+52586435 Msa1254470:CDS
TTTCAGCAGCATTGCCGGTT+TGG 0.320446 8_2:+52586239 Msa1254470:CDS
CCTGTCAATGGCGAGAAAAT+TGG 0.321831 8_2:+52586100 Msa1254470:CDS
TTCATATGACTTGATCCTAA+TGG 0.325693 8_2:+52590715 Msa1254470:three_prime_UTR
TTCTCTTTGTTTGTCTCCAT+TGG 0.328818 8_2:-52590318 None:intergenic
GCCAATTTCTTGCAAATATG+AGG 0.329015 8_2:+52587571 Msa1254470:CDS
AACCAAGTCTCTAAATAGTT+TGG 0.329706 8_2:+52585576 Msa1254470:CDS
CTCGAATTGCATGGAAGATA+TGG 0.331143 8_2:-52584360 None:intergenic
AGTCAAATTCTGCCTCTTCT+AGG 0.333858 8_2:-52588016 None:intergenic
AAAGAGAAACTTCCTGTGTT+TGG 0.334827 8_2:-52584202 None:intergenic
CATGCCCACTTCTAAACATT+TGG 0.335841 8_2:-52590978 None:intergenic
ATACCAAGAAAGCATATAAT+GGG 0.337592 8_2:+52587360 Msa1254470:CDS
CCGCCTTTCTTCTTGCTTCG+AGG 0.341358 8_2:-52587527 None:intergenic
TTTAGAATCATACACTAGTA+TGG 0.345251 8_2:-52584255 None:intergenic
ATGATATGCCAAAGCTAGTT+CGG 0.350156 8_2:+52588206 Msa1254470:CDS
TATGAAAATCCAAATTCTTA+TGG 0.352038 8_2:+52588445 Msa1254470:CDS
ATGAGGCAACAAAAGAAATA+AGG 0.352677 8_2:+52590882 Msa1254470:three_prime_UTR
TATTTACTTCTAGAGTTAGT+TGG 0.353325 8_2:+52584498 Msa1254470:five_prime_UTR
ATTTAGTTCAAGAAAATTGC+TGG 0.353944 8_2:-52591300 None:intergenic
TAGACTTGAGCACAGATATA+TGG 0.354728 8_2:+52589973 Msa1254470:three_prime_UTR
TATAATCGCATTAGTGTTCC+TGG 0.355538 8_2:-52589532 None:intergenic
GGTTCTGACATATCTGAAAT+TGG 0.360389 8_2:+52590275 Msa1254470:three_prime_UTR
AGGCACGGAGGCACCGGTCT+TGG 0.360852 8_2:+52589088 Msa1254470:three_prime_UTR
CTCTTTCTGCTTGAGTGCCT+TGG 0.362577 8_2:-52585726 None:intergenic
GACATTGAGTAGTTGAATAC+TGG 0.372323 8_2:-52584989 None:intergenic
TCTTTGTGAAATGCCATGTT+AGG 0.374134 8_2:-52585546 None:intergenic
AGATATCAAGATTGTCAAAA+AGG 0.382599 8_2:+52589504 Msa1254470:three_prime_UTR
CTTATTATAGGTTAATAAGA+TGG 0.385980 8_2:+52589477 Msa1254470:intron
ATCTCAGACACAAGTTGAAT+TGG 0.386650 8_2:+52584733 Msa1254470:five_prime_UTR
TGATATGCCAAAGCTAGTTC+GGG 0.388131 8_2:+52588207 Msa1254470:CDS
CAGGCAGTGGATGCTCTAAA+TGG 0.388139 8_2:+52590635 Msa1254470:three_prime_UTR
GTTACTTTCAGCAGCATTGC+CGG 0.388211 8_2:+52586234 Msa1254470:CDS
ACCAGATTCAAGTTCTACTA+TGG 0.393733 8_2:+52584848 Msa1254470:exon
TATAGCACATAGGTGGAATC+TGG 0.394834 8_2:+52587984 Msa1254470:intron
AAGCTCCGTCTTTACGGTAT+TGG 0.396922 8_2:-52590069 None:intergenic
TCCATCAGCTTAAAGTCAAT+TGG 0.397490 8_2:-52591019 None:intergenic
ATCATCTTTGCTTTGTAAAG+AGG 0.401741 8_2:-52590125 None:intergenic
TATTAGAAGTCTTCTTTGAA+TGG 0.404156 8_2:-52588543 None:intergenic
ATCCGAATTGCTTCTGCTCC+AGG 0.406373 8_2:-52588486 None:intergenic
CCATTTACTGAATAACATCT+TGG 0.406452 8_2:+52587832 Msa1254470:CDS
TTGATAACAAAATGATACTT+TGG 0.408163 8_2:+52588566 Msa1254470:CDS
GTATAGCTTATAAAATATAA+AGG 0.412199 8_2:+52591118 Msa1254470:three_prime_UTR
TTCATATGCTGCAAATGAAT+TGG 0.417578 8_2:-52586029 None:intergenic
CTTGATCCTAATGGATTGTC+AGG 0.421407 8_2:+52590724 Msa1254470:three_prime_UTR
TTCTAAATTCATTAGCATAC+AGG 0.422479 8_2:+52589905 Msa1254470:three_prime_UTR
TCAACAACAATGACAAATGT+TGG 0.424662 8_2:-52589939 None:intergenic
GAATTCAGACCCTCCGGAGC+TGG 0.424803 8_2:-52589885 None:intergenic
TACCTGACGGTGTAGCTTCA+TGG 0.425005 8_2:+52586179 Msa1254470:CDS
ACACCGATGGCAGCAGTAAT+CGG 0.426125 8_2:+52587719 Msa1254470:CDS
GAATCTCCCCGAACTAGCTT+TGG 0.429030 8_2:-52588214 None:intergenic
AAAAGCATTGTTGCAGTTGT+GGG 0.430753 8_2:+52586274 Msa1254470:CDS
TTTATTTCAACAAGAGCAAA+AGG 0.434209 8_2:+52590431 Msa1254470:three_prime_UTR
GCTATACTTATTGAGTCTTC+GGG 0.439537 8_2:-52586142 None:intergenic
TGCTGTAGGCGACGGACAAC+AGG 0.439996 8_2:+52590616 Msa1254470:three_prime_UTR
AGCCAAACTATTTAGAGACT+TGG 0.442714 8_2:-52585578 None:intergenic
ATAGCAACAAGTCTGCGATT+TGG 0.446888 8_2:+52586059 Msa1254470:CDS
GTTATGCTAGCTATCTTGAT+TGG 0.449619 8_2:+52585511 Msa1254470:CDS
AAGACGGAGCTTCGCAAGAA+AGG 0.451119 8_2:+52590080 Msa1254470:three_prime_UTR
TCTTCATGAACTTCATGACT+TGG 0.452162 8_2:-52586532 None:intergenic
TGACAGGATCAAGTTGTTCC+CGG 0.454045 8_2:-52586084 None:intergenic
GACTTTGGAAGGGAACTTGA+AGG 0.454376 8_2:+52588035 Msa1254470:CDS
CAACAACAATGACAAATGTT+GGG 0.456008 8_2:-52589938 None:intergenic
ACCCTGGAGCAGAAGCAATT+CGG 0.457255 8_2:+52588484 Msa1254470:CDS
TTTGATTCGAGTCTTGTGAA+TGG 0.458785 8_2:-52584424 None:intergenic
TGCCATGAAGCTACACCGTC+AGG 0.462950 8_2:-52586181 None:intergenic
AGGCAGAATTTGACTTTGGA+AGG 0.465133 8_2:+52588024 Msa1254470:CDS
TGATGCTCACTTTCCAGCTC+CGG 0.465154 8_2:+52589872 Msa1254470:three_prime_UTR
TAAAAGCATTGTTGCAGTTG+TGG 0.467925 8_2:+52586273 Msa1254470:CDS
ACGCGAGAGCGAAATTTGTA+TGG 0.470371 8_2:+52590027 Msa1254470:three_prime_UTR
CAGCATCATGATAATTGAAA+AGG 0.471138 8_2:+52584143 None:intergenic
TCTCTTTGTGAGTGAAAGAA+TGG 0.472536 8_2:-52591047 None:intergenic
ATGAGTCAATGTAATATTGC+TGG 0.473523 8_2:-52586573 None:intergenic
GCCATAGTAGAACTTGAATC+TGG 0.474458 8_2:-52584849 None:intergenic
ACTCGATAACTGTCAAGTAT+AGG 0.475293 8_2:+52585924 Msa1254470:CDS
ACCAATTGACTTTAAGCTGA+TGG 0.475909 8_2:+52591018 Msa1254470:three_prime_UTR
GAAGAGGCAGAATTTGACTT+TGG 0.476112 8_2:+52588020 Msa1254470:CDS
AGCATTTCATAGAGACTTGA+AGG 0.476420 8_2:+52585961 Msa1254470:CDS
CGTGGTTCGCCTAGCAATCA+TGG 0.479373 8_2:+52585034 Msa1254470:CDS
ATTAGGATCAAGTCATATGA+AGG 0.480841 8_2:-52590713 None:intergenic
ATATTGCTGGTGACCTAGCC+TGG 0.481011 8_2:-52586560 None:intergenic
CACATACCTGACAATCCATT+AGG 0.485467 8_2:-52590730 None:intergenic
TCCGTGCCTGAAATGAGAAA+AGG 0.485762 8_2:-52589074 None:intergenic
AAGAAAATTCCACAAGGATG+TGG 0.485997 8_2:+52584953 Msa1254470:CDS
CAAGTCTGCGATTTGGTACC+GGG 0.486373 8_2:+52586066 Msa1254470:CDS
AGAAGTCTCTCGAAGGTTTG+AGG 0.487229 8_2:+52590516 Msa1254470:three_prime_UTR
ATCCTACTACAGTGTCTTCG+TGG 0.488058 8_2:+52585016 Msa1254470:CDS
AGCTTCATGGCACGTTTCTG+TGG 0.489431 8_2:+52586192 Msa1254470:CDS
TCACTGTGTATTATCGTCAT+TGG 0.491172 8_2:+52587432 Msa1254470:CDS
GCCAAAGATGGATGGATATG+AGG 0.491952 8_2:+52590865 Msa1254470:three_prime_UTR
AGTGAAACAAGTAGGGTTAG+TGG 0.492488 8_2:+52590470 Msa1254470:three_prime_UTR
AACACAGAATCCCATTTACT+CGG 0.494050 8_2:-52588862 None:intergenic
CTAAAATAATTTCTACATTG+TGG 0.494150 8_2:-52588091 None:intergenic
TCATGAACTTCATGACTTGG+AGG 0.494671 8_2:-52586529 None:intergenic
ACAAGTCTGCGATTTGGTAC+CGG 0.495830 8_2:+52586065 Msa1254470:CDS
TCTTTGCATTGTCAGATCCT+TGG 0.496165 8_2:+52589111 Msa1254470:three_prime_UTR
TGTCTGAGATTGAGACATAA+TGG 0.496408 8_2:-52584720 None:intergenic
AAAGTTATGGCATATTGCAT+TGG 0.497550 8_2:-52584319 None:intergenic
TGCCCATGTGACAGCCCTCA+TGG 0.504539 8_2:-52585876 None:intergenic
TAGTGTAGGGCAGTTAATGA+AGG 0.504796 8_2:+52586315 Msa1254470:CDS
TCAAGTCTCTATGAAATGCT+TGG 0.505424 8_2:-52585958 None:intergenic
TAGAAAGTGAAAGAAAGTTA+TGG 0.505663 8_2:-52584332 None:intergenic
CATTTCAGGCACGGAGGCAC+CGG 0.506583 8_2:+52589082 Msa1254470:three_prime_UTR
TGCTCACTTTCCAGCTCCGG+AGG 0.508924 8_2:+52589875 Msa1254470:three_prime_UTR
AGGTATTGACCCGAGTAAAT+GGG 0.509028 8_2:+52588852 Msa1254470:intron
GCAGGAATGTTAGAAACAAA+TGG 0.512082 8_2:-52591359 None:intergenic
GAAGACTCAATAAGTATAGC+TGG 0.512406 8_2:+52586145 Msa1254470:CDS
TTTGTTGAATTTGTAAGTAG+AGG 0.513089 8_2:-52586415 None:intergenic
AAGATACAGCAGTAATTCAA+AGG 0.514361 8_2:+52590552 Msa1254470:three_prime_UTR
GGTTCAAGTAAAGCTATGAA+TGG 0.518559 8_2:+52590491 Msa1254470:three_prime_UTR
CATACACTAGTATGGTTATG+TGG 0.519952 8_2:-52584247 None:intergenic
TATACATTCGAAGTCATGTT+GGG 0.520373 8_2:-52591157 None:intergenic
TCTAATCTTGTAACTGCCAA+TGG 0.521244 8_2:+52590302 Msa1254470:three_prime_UTR
TTATTATAGGTTAATAAGAT+GGG 0.523404 8_2:+52589478 Msa1254470:intron
TCTAAACATGCCAACTGTCT+AGG 0.524650 8_2:+52584272 Msa1254470:five_prime_UTR
CAACTGCACTTTATAGTGTA+GGG 0.526485 8_2:+52586302 Msa1254470:CDS
CATGAACTTCATGACTTGGA+GGG 0.527216 8_2:-52586528 None:intergenic
AATAAAGCAGATGCCAAAGA+TGG 0.528045 8_2:+52590853 Msa1254470:intron
ACAACTGCACTTTATAGTGT+AGG 0.528302 8_2:+52586301 Msa1254470:CDS
CTAAAGGTAGTGAAACAAGT+AGG 0.530053 8_2:+52590462 Msa1254470:three_prime_UTR
ATCCATGAGGGCTGTCACAT+GGG 0.532393 8_2:+52585874 Msa1254470:CDS
TGTGATGTTGCAAGCTCAGA+TGG 0.534189 8_2:+52590254 Msa1254470:three_prime_UTR
GCTATTACTGTGGGAACAGT+AGG 0.534237 8_2:-52584225 None:intergenic
ATTAACTGACCATGATTGCT+AGG 0.534354 8_2:-52585043 None:intergenic
GATGCTCTAAATGGCATGCC+TGG 0.535325 8_2:+52590644 Msa1254470:three_prime_UTR
TAATTAAATTTGTTATCACT+CGG 0.536846 8_2:+52584467 Msa1254470:five_prime_UTR
TTATTAGAAGAATCCCAAAC+CGG 0.537322 8_2:-52586253 None:intergenic
CACCGTCAGGTACTTGAGAC+AGG 0.538434 8_2:-52586168 None:intergenic
GACAATGCAAAGACCAAGAC+CGG 0.538892 8_2:-52589101 None:intergenic
TTGTTGAATTTGTAAGTAGA+GGG 0.538960 8_2:-52586414 None:intergenic
TGATGATGCTAACAAAGGAT+TGG 0.544299 8_2:+52591091 Msa1254470:three_prime_UTR
GAACAACTTGATCCTGTCAA+TGG 0.544898 8_2:+52586088 Msa1254470:CDS
TCCTCTCAGAATAATGTGAC+CGG 0.546854 8_2:-52588419 None:intergenic
TGTAAGTAGAGGGTCATTTG+TGG 0.547760 8_2:-52586404 None:intergenic
TCACTATGGAAGCATCTGAA+TGG 0.547812 8_2:+52589784 Msa1254470:three_prime_UTR
AATGTTCCACATCCTCAAGA+TGG 0.547990 8_2:-52585632 None:intergenic
AATTTAGAATTCAGACCCTC+CGG 0.549015 8_2:-52589891 None:intergenic
TGAAAGAGCCTTCAAAACAT+TGG 0.549125 8_2:+52587392 Msa1254470:CDS
ACGTGGCTAAAGAAAACATA+CGG 0.549744 8_2:+52586496 Msa1254470:CDS
GCAAAAGGTGAAGATTCTAA+AGG 0.549796 8_2:+52590446 Msa1254470:three_prime_UTR
TTCTGCAACGTCCCATCTTG+AGG 0.550001 8_2:+52585620 Msa1254470:CDS
ACTTTGGAAGGGAACTTGAA+GGG 0.550352 8_2:+52588036 Msa1254470:CDS
AAGTTCATGAAGAGAATGCC+AGG 0.551847 8_2:+52586542 Msa1254470:CDS
GAAGTTGACGACACAGGCTG+TGG 0.553420 8_2:+52588592 Msa1254470:CDS
ATTGACAGATGGAGTATCAA+AGG 0.553958 8_2:+52587473 Msa1254470:CDS
AAGCAGATGCCAAAGATGGA+TGG 0.554555 8_2:+52590857 Msa1254470:intron
AATCCATGAGGGCTGTCACA+TGG 0.555825 8_2:+52585873 Msa1254470:CDS
TGTTGTTCTGTGGCATCCAC+AGG 0.556728 8_2:-52589571 None:intergenic
ATGATAATTGAAAAGGAGTG+TGG 0.557551 8_2:+52584150 None:intergenic
GCTTCATGGCACGTTTCTGT+GGG 0.557558 8_2:+52586193 Msa1254470:CDS
ATGGAAGCATCTGAATGGAA+TGG 0.558044 8_2:+52589789 Msa1254470:three_prime_UTR
GGTCTCATTATATGAAAGAT+CGG 0.560737 8_2:-52586008 None:intergenic
TGCTTATTAGGATTAAGTAA+TGG 0.563159 8_2:+52590386 Msa1254470:three_prime_UTR
CATGCGACTAACTGCACCTG+TGG 0.564009 8_2:+52589555 Msa1254470:three_prime_UTR
AGATACAGCAGTAATTCAAA+GGG 0.566152 8_2:+52590553 Msa1254470:three_prime_UTR
TCGGGGAGATTCTGCGAGAG+TGG 0.566872 8_2:+52588225 Msa1254470:CDS
TGATAATTGAAAAGGAGTGT+GGG 0.568000 8_2:+52584151 Msa1254470:five_prime_UTR
CAGGTACTTCTTGCACTGCA+TGG 0.569416 8_2:+52589711 Msa1254470:intron
TAAAGGTAGTGAAACAAGTA+GGG 0.570399 8_2:+52590463 Msa1254470:three_prime_UTR
GGCAGAATTTGACTTTGGAA+GGG 0.570782 8_2:+52588025 Msa1254470:CDS
ATTGTGTTTCTTTCAACACC+AGG 0.570876 8_2:-52590662 None:intergenic
CATGAAGAGAATGCCAGGCT+AGG 0.571449 8_2:+52586547 Msa1254470:CDS
AGGCGACGGACAACAGGCAG+TGG 0.572133 8_2:+52590622 Msa1254470:three_prime_UTR
ATGCTGATTTGTTTGCTCAA+AGG 0.572441 8_2:-52588976 None:intergenic
TCCGAATTGCTTCTGCTCCA+GGG 0.572483 8_2:-52588485 None:intergenic
AACGTCCCATCTTGAGGATG+TGG 0.573006 8_2:+52585626 Msa1254470:CDS
GGAGCCACCGTTGTTGCTGT+AGG 0.580845 8_2:+52590602 Msa1254470:three_prime_UTR
ATAACTGTCAAGTATAGGAA+TGG 0.583037 8_2:+52585929 Msa1254470:CDS
AACAATGATGATGCTAACAA+AGG 0.583139 8_2:+52591086 Msa1254470:three_prime_UTR
AGGATTAAGTAATGGATACA+TGG 0.583551 8_2:+52590394 Msa1254470:three_prime_UTR
TCACCTCGAAGCAAGAAGAA+AGG 0.583647 8_2:+52587524 Msa1254470:CDS
ATGTTCCACATCCTCAAGAT+GGG 0.584461 8_2:-52585631 None:intergenic
AATCCGATTACTGCTGCCAT+CGG 0.585511 8_2:-52587722 None:intergenic
TGAGCTGTAAGAGCGACGAT+TGG 0.588069 8_2:-52590935 None:intergenic
CGAAGCAAGAAGAAAGGCGG+AGG 0.588877 8_2:+52587530 Msa1254470:CDS
ATGTTGTGTACCTAGACAGT+TGG 0.589427 8_2:-52584282 None:intergenic
TGGTTATGTGGCTATTACTG+TGG 0.590108 8_2:-52584235 None:intergenic
AAATAAGATTCATACCAGAA+AGG 0.590579 8_2:-52588115 None:intergenic
ACCGTTGTTGCTGTAGGCGA+CGG 0.591122 8_2:+52590608 Msa1254470:three_prime_UTR
CTCTCGCGTAGTACTTGTGA+AGG 0.591922 8_2:-52590013 None:intergenic
TGGAAAACTTGTCCTAGAAG+AGG 0.595077 8_2:+52588004 Msa1254470:CDS
TTATGCAGACTCGAATTGCA+TGG 0.595544 8_2:-52584369 None:intergenic
GTCACATTATTCTGAGAGGA+TGG 0.598173 8_2:+52588422 Msa1254470:CDS
TGAAGCCAAATGTTTAGAAG+TGG 0.598691 8_2:+52590973 Msa1254470:three_prime_UTR
AACCACGAAGACACTGTAGT+AGG 0.600067 8_2:-52585018 None:intergenic
TATGTATTTGACCTCTCAAG+AGG 0.601678 8_2:+52586363 Msa1254470:CDS
TTATAGGTTAATAAGATGGG+TGG 0.602754 8_2:+52589481 Msa1254470:intron
GTATACATTCGAAGTCATGT+TGG 0.607233 8_2:-52591158 None:intergenic
TGGAGACAAACAAAGAGAAG+AGG 0.609301 8_2:+52590322 Msa1254470:three_prime_UTR
TGCCACTGGCTGAAGATACA+CGG 0.609481 8_2:+52589041 Msa1254470:three_prime_UTR
GGCCTGTCTCAAGTACCTGA+CGG 0.611371 8_2:+52586166 Msa1254470:CDS
TAACATCTTGGATATAAGCA+AGG 0.613751 8_2:+52587844 Msa1254470:CDS
TGGTTTGAAGTTGACGACAC+AGG 0.613885 8_2:+52588586 Msa1254470:CDS
TCATCATTGTTAAGATGACA+AGG 0.613919 8_2:-52591074 None:intergenic
CTCGTCCAATACCGTAAAGA+CGG 0.614421 8_2:+52590064 Msa1254470:three_prime_UTR
GCTCACTTTCCAGCTCCGGA+GGG 0.614527 8_2:+52589876 Msa1254470:three_prime_UTR
CAAATGTTTAGAAGTGGGCA+TGG 0.615383 8_2:+52590979 Msa1254470:three_prime_UTR
GAGTATGTTATCAGAAGCCA+CGG 0.615717 8_2:+52585700 Msa1254470:CDS
GAAGCCAAATGTTTAGAAGT+GGG 0.619807 8_2:+52590974 Msa1254470:three_prime_UTR
CTTGAGTGCCTTGGTTACCG+TGG 0.624316 8_2:-52585717 None:intergenic
TACAGCAGTAATTCAAAGGG+TGG 0.626931 8_2:+52590556 Msa1254470:three_prime_UTR
CTCCGTGTATCTTCAGCCAG+TGG 0.626933 8_2:-52589043 None:intergenic
CACTCAAGCAGAAAGAGTTG+AGG 0.627252 8_2:+52585732 Msa1254470:CDS
ATCAGAAGCCACGGTAACCA+AGG 0.628492 8_2:+52585709 Msa1254470:CDS
TTAGGATCAAGTCATATGAA+GGG 0.630200 8_2:-52590712 None:intergenic
ATAATCGCATTAGTGTTCCT+GGG 0.633707 8_2:-52589531 None:intergenic
TACCAAGAAAGCATATAATG+GGG 0.634950 8_2:+52587361 Msa1254470:CDS
GGTTATGTGGCTATTACTGT+GGG 0.635485 8_2:-52584234 None:intergenic
GGCAATGCTGCTGAAAGTAA+CGG 0.637366 8_2:-52586232 None:intergenic
TAAGAGCGACGATTGGAATG+TGG 0.639382 8_2:-52590928 None:intergenic
TGATAACGAAGTAATAAGAG+AGG 0.639587 8_2:+52586468 Msa1254470:CDS
GAACTAGTTGATAAGCATAG+TGG 0.639801 8_2:+52586337 Msa1254470:CDS
TTCAGAGTATCTCCAAACAC+AGG 0.641772 8_2:+52584190 Msa1254470:five_prime_UTR
GTCTACTCACTATCCTAACA+TGG 0.643699 8_2:+52585533 Msa1254470:CDS
GATAACGAAGTAATAAGAGA+GGG 0.644016 8_2:+52586469 Msa1254470:CDS
ACACAGAATCCCATTTACTC+GGG 0.644528 8_2:-52588861 None:intergenic
GTAGATTAATTACATCCAAG+TGG 0.645554 8_2:+52589742 Msa1254470:three_prime_UTR
GATAATTGAAAAGGAGTGTG+GGG 0.646835 8_2:+52584152 Msa1254470:five_prime_UTR
ATGTATTTGACCTCTCAAGA+GGG 0.651272 8_2:+52586364 Msa1254470:CDS
GTTGCAGAAGTTCGTAACGC+AGG 0.651401 8_2:-52585606 None:intergenic
AATGGAAAGAAGTCTCTCGA+AGG 0.654516 8_2:+52590509 Msa1254470:three_prime_UTR
AAGCAAATAGCCCTCTTGAG+AGG 0.654817 8_2:-52586374 None:intergenic
ACCAAGAAAGCATATAATGG+GGG 0.661897 8_2:+52587362 Msa1254470:CDS
CGTGGCTAAAGAAAACATAC+GGG 0.662683 8_2:+52586497 Msa1254470:CDS
GATATGCATGATATTCACGC+AGG 0.664127 8_2:-52591377 None:intergenic
TCCGTCGCCTACAGCAACAA+CGG 0.667951 8_2:-52590609 None:intergenic
GCCGGTCACATTATTCTGAG+AGG 0.668073 8_2:+52588418 Msa1254470:intron
CACAGATGTATGAATCCATG+AGG 0.669707 8_2:+52585861 Msa1254470:intron
TCATGAACTGAGGACACCGA+TGG 0.669919 8_2:+52587706 Msa1254470:CDS
AAAAGGAGTGTGGGGCACCA+CGG 0.670408 8_2:+52584160 Msa1254470:five_prime_UTR
ATACTCTGAATTTGGTACCG+TGG 0.674326 8_2:-52584177 None:intergenic
ACATTCGAAGTCATGTTGGG+AGG 0.683757 8_2:-52591154 None:intergenic
GACTTGACAATGTTGTTCTG+TGG 0.690481 8_2:-52589581 None:intergenic
CCTCGAAGCAAGAAGAAAGG+CGG 0.694393 8_2:+52587527 Msa1254470:CDS
ACAGATGTATGAATCCATGA+GGG 0.694819 8_2:+52585862 Msa1254470:intron
TGCATTACAGTCATGAACTG+AGG 0.713029 8_2:+52587696 Msa1254470:intron
GATATGCCAAAGCTAGTTCG+GGG 0.714157 8_2:+52588208 Msa1254470:CDS
AGGCAGAAGAAAATTCCACA+AGG 0.721322 8_2:+52584947 Msa1254470:CDS
GTCGCCTACAGCAACAACGG+TGG 0.727532 8_2:-52590606 None:intergenic
ATTCAGTAAATGGAGCAATG+CGG 0.730319 8_2:-52587822 None:intergenic
TAATAAGAGAGGGAGCGACG+TGG 0.735133 8_2:+52586479 Msa1254470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTTGTTTAAATACTA+TGG - chr8_2:52585271-52585290 None:intergenic 10.0%
!!! TATAATGTATTTATACATTT+TGG + chr8_2:52587302-52587321 Msa1254470:intron 10.0%
!!! TAATTAAATTTGTTATCACT+CGG + chr8_2:52584467-52584486 Msa1254470:five_prime_UTR 15.0%
!!! TGTTTTTTAATACTAATACT+TGG - chr8_2:52584539-52584558 None:intergenic 15.0%
!!! AAATAAATAACCAATTTTGT+TGG + chr8_2:52585458-52585477 Msa1254470:intron 15.0%
!! AAAAAATAAGATCAAATGTA+AGG - chr8_2:52586654-52586673 None:intergenic 15.0%
!!! TAAAATTTTACGATGTTATA+TGG + chr8_2:52586684-52586703 Msa1254470:intron 15.0%
!! AAATTTAAAGATTTGTCAAA+TGG + chr8_2:52588334-52588353 Msa1254470:intron 15.0%
!!! TTTTTCTAGAATAATTTTGT+TGG - chr8_2:52588623-52588642 None:intergenic 15.0%
!! TTATTATAGGTTAATAAGAT+GGG + chr8_2:52589478-52589497 Msa1254470:intron 15.0%
!!! TTATATTTTATAAGCTATAC+AGG - chr8_2:52591118-52591137 None:intergenic 15.0%
!! GTATAGCTTATAAAATATAA+AGG + chr8_2:52591118-52591137 Msa1254470:three_prime_UTR 15.0%
!! CAAAATTGTAACATCATATA+AGG - chr8_2:52585074-52585093 None:intergenic 20.0%
!! TTATTTATCTTCACAACAAA+GGG - chr8_2:52585444-52585463 None:intergenic 20.0%
!! TTTATTTATCTTCACAACAA+AGG - chr8_2:52585445-52585464 None:intergenic 20.0%
!! TAAATTCTAACTTATAGCAA+AGG - chr8_2:52585786-52585805 None:intergenic 20.0%
!! AATAAACCACTAAAAGAAAA+TGG - chr8_2:52585813-52585832 None:intergenic 20.0%
!!! TAGAAATATACTAGTTTGTT+TGG + chr8_2:52586912-52586931 Msa1254470:intron 20.0%
!!! AAATTTATAATTTGTGTCCT+GGG - chr8_2:52587256-52587275 None:intergenic 20.0%
!!! AAAATTTATAATTTGTGTCC+TGG - chr8_2:52587257-52587276 None:intergenic 20.0%
!!! ATGTATTTATACATTTTGGT+TGG + chr8_2:52587306-52587325 Msa1254470:intron 20.0%
!!! ACATTTTCTTATTTGAGTAA+CGG - chr8_2:52587798-52587817 None:intergenic 20.0%
!! CTAAAATAATTTCTACATTG+TGG - chr8_2:52588094-52588113 None:intergenic 20.0%
!!! TATTTTTGGTTGCATAATAT+AGG + chr8_2:52588133-52588152 Msa1254470:intron 20.0%
!! CTCTATGTAAGTAAAAAAAT+TGG + chr8_2:52588290-52588309 Msa1254470:intron 20.0%
!! TATGAAAATCCAAATTCTTA+TGG + chr8_2:52588445-52588464 Msa1254470:CDS 20.0%
!!! TTGATAACAAAATGATACTT+TGG + chr8_2:52588566-52588585 Msa1254470:CDS 20.0%
!!! TTATTCTTTTGCAAATGAAA+CGG - chr8_2:52589156-52589175 None:intergenic 20.0%
!! AAAATTCTCTAGTTAGTTAA+AGG - chr8_2:52589206-52589225 None:intergenic 20.0%
!!! TTTTTGTCTTGTATAGTAAT+TGG + chr8_2:52589222-52589241 Msa1254470:intron 20.0%
!! CATCTTATTAACCTATAATA+AGG - chr8_2:52589479-52589498 None:intergenic 20.0%
!! CTTATTATAGGTTAATAAGA+TGG + chr8_2:52589477-52589496 Msa1254470:intron 20.0%
!!! TTTTGCTAACAATAACTTAA+TGG + chr8_2:52589606-52589625 Msa1254470:three_prime_UTR 20.0%
!! ACAAAAGAAAAATATGAAAG+AGG + chr8_2:52590190-52590209 Msa1254470:three_prime_UTR 20.0%
!! TTTAGAATCATACACTAGTA+TGG - chr8_2:52584258-52584277 None:intergenic 25.0%
! TAGAAAGTGAAAGAAAGTTA+TGG - chr8_2:52584335-52584354 None:intergenic 25.0%
!!! TATTTACTTCTAGAGTTAGT+TGG + chr8_2:52584498-52584517 Msa1254470:five_prime_UTR 25.0%
!! ACATAAAGAATTTTCACAAG+AGG - chr8_2:52584826-52584845 None:intergenic 25.0%
! TTATCTTCTTACATTAGTAC+CGG + chr8_2:52585391-52585410 Msa1254470:intron 25.0%
!! ACCAATTTTGTTGGATTAAT+CGG + chr8_2:52585467-52585486 Msa1254470:intron 25.0%
! ACCTACATATACCAAAATAA+TGG - chr8_2:52585493-52585512 None:intergenic 25.0%
!! TAGATTCCATTTTCTTTTAG+TGG + chr8_2:52585804-52585823 Msa1254470:intron 25.0%
! TTGTTGAATTTGTAAGTAGA+GGG - chr8_2:52586417-52586436 None:intergenic 25.0%
! TTTGTTGAATTTGTAAGTAG+AGG - chr8_2:52586418-52586437 None:intergenic 25.0%
! TCAAATAAGTCAACTTTAAC+CGG - chr8_2:52586721-52586740 None:intergenic 25.0%
! AATAAGCTGAAAACAGATTA+TGG - chr8_2:52587061-52587080 None:intergenic 25.0%
! TGAAAACATCTTATAGCTTA+TGG + chr8_2:52587106-52587125 Msa1254470:intron 25.0%
! GTATAATCTATAACCTTGTT+TGG - chr8_2:52587171-52587190 None:intergenic 25.0%
!! ATACCAAGAAAGCATATAAT+GGG + chr8_2:52587360-52587379 Msa1254470:CDS 25.0%
! AAAAAATTAAGATACACCGA+TGG + chr8_2:52587623-52587642 Msa1254470:intron 25.0%
!! ATTACTTGACATTCTTTTGT+CGG + chr8_2:52587742-52587761 Msa1254470:CDS 25.0%
! TGCTTAGAGCAATTATTTAA+AGG + chr8_2:52587911-52587930 Msa1254470:intron 25.0%
! TATTTAAAGGAAAACGATTG+TGG + chr8_2:52587924-52587943 Msa1254470:intron 25.0%
! TCTAATATCTTATAGCACAT+AGG + chr8_2:52587974-52587993 Msa1254470:intron 25.0%
!!! GAAATTATTTTAGACCTTTC+TGG + chr8_2:52588101-52588120 Msa1254470:CDS 25.0%
! AAATAAGATTCATACCAGAA+AGG - chr8_2:52588118-52588137 None:intergenic 25.0%
!!! TCTGGTATGAATCTTATTTT+TGG + chr8_2:52588119-52588138 Msa1254470:intron 25.0%
! TATTAGAAGTCTTCTTTGAA+TGG - chr8_2:52588546-52588565 None:intergenic 25.0%
!! GCAAAAGAAAAGATAGTTTT+AGG + chr8_2:52588657-52588676 Msa1254470:intron 25.0%
!! GTTTTTCTTTTACCACAAAA+GGG - chr8_2:52588749-52588768 None:intergenic 25.0%
!! GTAAAAGAAAAACCAGTTTT+AGG + chr8_2:52588756-52588775 Msa1254470:intron 25.0%
! ACTATGATTTATCCTAAAAC+TGG - chr8_2:52588771-52588790 None:intergenic 25.0%
! TGTAAAGCATAGACATAAAT+AGG + chr8_2:52589305-52589324 Msa1254470:intron 25.0%
! TATGAGATTCATATCACTTT+AGG - chr8_2:52589444-52589463 None:intergenic 25.0%
! AGTGATATGAATCTCATATT+AGG + chr8_2:52589446-52589465 Msa1254470:intron 25.0%
! AGATATCAAGATTGTCAAAA+AGG + chr8_2:52589504-52589523 Msa1254470:three_prime_UTR 25.0%
!! ATATGACACTTCTTATTTCA+GGG - chr8_2:52589686-52589705 None:intergenic 25.0%
! TTCTAAATTCATTAGCATAC+AGG + chr8_2:52589905-52589924 Msa1254470:three_prime_UTR 25.0%
!! AGCAAAGATGATTCATATTT+TGG + chr8_2:52590136-52590155 Msa1254470:three_prime_UTR 25.0%
! TGCTTATTAGGATTAAGTAA+TGG + chr8_2:52590386-52590405 Msa1254470:three_prime_UTR 25.0%
! TTTATTTCAACAAGAGCAAA+AGG + chr8_2:52590431-52590450 Msa1254470:three_prime_UTR 25.0%
! AACCATAATGCTTGAAAAAA+TGG + chr8_2:52590580-52590599 Msa1254470:three_prime_UTR 25.0%
! ACCATAATGCTTGAAAAAAT+GGG + chr8_2:52590581-52590600 Msa1254470:three_prime_UTR 25.0%
! GAAATAAGGAAATCAGAAAT+TGG + chr8_2:52590896-52590915 Msa1254470:three_prime_UTR 25.0%
! CGAAAAAAATTGTTCAGAAT+CGG - chr8_2:52591213-52591232 None:intergenic 25.0%
!! ATTTAGTTCAAGAAAATTGC+TGG - chr8_2:52591303-52591322 None:intergenic 25.0%
! TGATAATTGAAAAGGAGTGT+GGG + chr8_2:52584151-52584170 Msa1254470:five_prime_UTR 30.0%
CTAGGTACACAACATATAAA+AGG + chr8_2:52584290-52584309 Msa1254470:five_prime_UTR 30.0%
AAAGTTATGGCATATTGCAT+TGG - chr8_2:52584322-52584341 None:intergenic 30.0%
! AAGAATTTTCACAAGAGGTT+TGG - chr8_2:52584821-52584840 None:intergenic 30.0%
AAGAAAAATAGCACACTAAC+AGG + chr8_2:52584927-52584946 Msa1254470:CDS 30.0%
! ACTCATATTCGTTGATAAGT+GGG + chr8_2:52585214-52585233 Msa1254470:intron 30.0%
AATTGTTAGAACAGCAAATC+CGG - chr8_2:52585413-52585432 None:intergenic 30.0%
!!! GCCATTATTTTGGTATATGT+AGG + chr8_2:52585489-52585508 Msa1254470:intron 30.0%
AACCAAGTCTCTAAATAGTT+TGG + chr8_2:52585576-52585595 Msa1254470:CDS 30.0%
ATACATCTGTGGGAAAAAAT+TGG - chr8_2:52585852-52585871 None:intergenic 30.0%
ATAACTGTCAAGTATAGGAA+TGG + chr8_2:52585929-52585948 Msa1254470:CDS 30.0%
GGTCTCATTATATGAAAGAT+CGG - chr8_2:52586011-52586030 None:intergenic 30.0%
TTCATATGCTGCAAATGAAT+TGG - chr8_2:52586032-52586051 None:intergenic 30.0%
AGCTATACTTATTGAGTCTT+CGG - chr8_2:52586146-52586165 None:intergenic 30.0%
TTATTAGAAGAATCCCAAAC+CGG - chr8_2:52586256-52586275 None:intergenic 30.0%
AAAGAAACCTGAGCTTAAAA+TGG + chr8_2:52586435-52586454 Msa1254470:CDS 30.0%
! TGATAACGAAGTAATAAGAG+AGG + chr8_2:52586468-52586487 Msa1254470:CDS 30.0%
GATAACGAAGTAATAAGAGA+GGG + chr8_2:52586469-52586488 Msa1254470:CDS 30.0%
ATGAGTCAATGTAATATTGC+TGG - chr8_2:52586576-52586595 None:intergenic 30.0%
!!! AAGGAAGCTTTTTCAAGATT+AGG - chr8_2:52586603-52586622 None:intergenic 30.0%
AATCTTGAAAAAGCTTCCTT+TGG + chr8_2:52586603-52586622 Msa1254470:CDS 30.0%
AGTGTCTTAAAATGTACCAA+AGG - chr8_2:52586622-52586641 None:intergenic 30.0%
GATGTTATATGGATGAGTAA+AGG + chr8_2:52586695-52586714 Msa1254470:intron 30.0%
! AAGTTATTCTAGAGAGCTTA+TGG - chr8_2:52586835-52586854 None:intergenic 30.0%
! GATGTTTTCATAAGTTATCC+TGG - chr8_2:52587096-52587115 None:intergenic 30.0%
! CATACCAAGAAAGCATATAA+TGG + chr8_2:52587359-52587378 Msa1254470:CDS 30.0%
! TACCAAGAAAGCATATAATG+GGG + chr8_2:52587361-52587380 Msa1254470:CDS 30.0%
!! CAGAATAACCAATGTTTTGA+AGG - chr8_2:52587403-52587422 None:intergenic 30.0%
!! TGCATTTTGATATTGACAGA+TGG + chr8_2:52587462-52587481 Msa1254470:CDS 30.0%
ACCTCATATTTGCAAGAAAT+TGG - chr8_2:52587575-52587594 None:intergenic 30.0%
ATTTCTTGCAAATATGAGGT+TGG + chr8_2:52587575-52587594 Msa1254470:intron 30.0%
CCAAGATGTTATTCAGTAAA+TGG - chr8_2:52587835-52587854 None:intergenic 30.0%
CCATTTACTGAATAACATCT+TGG + chr8_2:52587832-52587851 Msa1254470:CDS 30.0%
TAACATCTTGGATATAAGCA+AGG + chr8_2:52587844-52587863 Msa1254470:CDS 30.0%
AATATCTTATAGCACATAGG+TGG + chr8_2:52587977-52587996 Msa1254470:intron 30.0%
CTAATCTTAACTCTGTCAAA+TGG + chr8_2:52588389-52588408 Msa1254470:intron 30.0%
TCACTATCACCATAAGAATT+TGG - chr8_2:52588457-52588476 None:intergenic 30.0%
!! TGATAGTGAAAATTTTACCC+TGG + chr8_2:52588468-52588487 Msa1254470:CDS 30.0%
! TAGAAAAACTATCCCTTTTG+TGG + chr8_2:52588635-52588654 Msa1254470:intron 30.0%
! TCTTTTCTTTTGCCACAAAA+GGG - chr8_2:52588650-52588669 None:intergenic 30.0%
! ATCTTTTCTTTTGCCACAAA+AGG - chr8_2:52588651-52588670 None:intergenic 30.0%
TAGACTAGTGTCAAAAACAT+GGG - chr8_2:52588704-52588723 None:intergenic 30.0%
! ACTGAAAATTTTCCCTTTTG+TGG + chr8_2:52588734-52588753 Msa1254470:intron 30.0%
! GGTTTTTCTTTTACCACAAA+AGG - chr8_2:52588750-52588769 None:intergenic 30.0%
! CTTAAACCTTTTCTCATTTC+AGG + chr8_2:52589068-52589087 Msa1254470:three_prime_UTR 30.0%
TTGTCTTGTATAGTAATTGG+TGG + chr8_2:52589225-52589244 Msa1254470:intron 30.0%
TGTCTTGTATAGTAATTGGT+GGG + chr8_2:52589226-52589245 Msa1254470:intron 30.0%
!!! TGATCTTATTTTAGCGTAGT+AGG + chr8_2:52589371-52589390 Msa1254470:intron 30.0%
TAGGCTTATCTCCTTATTAT+AGG + chr8_2:52589465-52589484 Msa1254470:intron 30.0%
TTATAGGTTAATAAGATGGG+TGG + chr8_2:52589481-52589500 Msa1254470:intron 30.0%
ATCAAGATTGTCAAAAAGGA+AGG + chr8_2:52589508-52589527 Msa1254470:three_prime_UTR 30.0%
! GATATGACACTTCTTATTTC+AGG - chr8_2:52589687-52589706 None:intergenic 30.0%
GTAGATTAATTACATCCAAG+TGG + chr8_2:52589742-52589761 Msa1254470:three_prime_UTR 30.0%
CAACAACAATGACAAATGTT+GGG - chr8_2:52589941-52589960 None:intergenic 30.0%
TCAACAACAATGACAAATGT+TGG - chr8_2:52589942-52589961 None:intergenic 30.0%
ATCATCTTTGCTTTGTAAAG+AGG - chr8_2:52590128-52590147 None:intergenic 30.0%
!! TATTTTGGAAGACGTCATAA+AGG + chr8_2:52590151-52590170 Msa1254470:three_prime_UTR 30.0%
!!! CTAATAAGCAGTTACTTTTC+TGG - chr8_2:52590376-52590395 None:intergenic 30.0%
CAGAAAAGTAACTGCTTATT+AGG + chr8_2:52590374-52590393 Msa1254470:three_prime_UTR 30.0%
!! AGGATTAAGTAATGGATACA+TGG + chr8_2:52590394-52590413 Msa1254470:three_prime_UTR 30.0%
TAAAGGTAGTGAAACAAGTA+GGG + chr8_2:52590463-52590482 Msa1254470:three_prime_UTR 30.0%
AAGATACAGCAGTAATTCAA+AGG + chr8_2:52590552-52590571 Msa1254470:three_prime_UTR 30.0%
AGATACAGCAGTAATTCAAA+GGG + chr8_2:52590553-52590572 Msa1254470:three_prime_UTR 30.0%
!!! TCCCATTTTTTCAAGCATTA+TGG - chr8_2:52590585-52590604 None:intergenic 30.0%
TTAGGATCAAGTCATATGAA+GGG - chr8_2:52590715-52590734 None:intergenic 30.0%
ATTAGGATCAAGTCATATGA+AGG - chr8_2:52590716-52590735 None:intergenic 30.0%
TTCATATGACTTGATCCTAA+TGG + chr8_2:52590715-52590734 Msa1254470:three_prime_UTR 30.0%
!! AAGAAGTGTTTATCCAAACA+AGG - chr8_2:52590794-52590813 None:intergenic 30.0%
ATGAGGCAACAAAAGAAATA+AGG + chr8_2:52590882-52590901 Msa1254470:three_prime_UTR 30.0%
TCATCATTGTTAAGATGACA+AGG - chr8_2:52591077-52591096 None:intergenic 30.0%
! AACAATGATGATGCTAACAA+AGG + chr8_2:52591086-52591105 Msa1254470:three_prime_UTR 30.0%
TATACATTCGAAGTCATGTT+GGG - chr8_2:52591160-52591179 None:intergenic 30.0%
! GATAATTGAAAAGGAGTGTG+GGG + chr8_2:52584152-52584171 Msa1254470:five_prime_UTR 35.0%
GTTTGGAGATACTCTGAATT+TGG - chr8_2:52584188-52584207 None:intergenic 35.0%
AAAGAGAAACTTCCTGTGTT+TGG - chr8_2:52584205-52584224 None:intergenic 35.0%
CATACACTAGTATGGTTATG+TGG - chr8_2:52584250-52584269 None:intergenic 35.0%
! TTTGATTCGAGTCTTGTGAA+TGG - chr8_2:52584427-52584446 None:intergenic 35.0%
! TGTCTGAGATTGAGACATAA+TGG - chr8_2:52584723-52584742 None:intergenic 35.0%
! ATCTCAGACACAAGTTGAAT+TGG + chr8_2:52584733-52584752 Msa1254470:five_prime_UTR 35.0%
! ACCAGATTCAAGTTCTACTA+TGG + chr8_2:52584848-52584867 Msa1254470:exon 35.0%
!!! GCTATTTTTCTTCCAACAAG+TGG - chr8_2:52584919-52584938 None:intergenic 35.0%
AAGAAAATTCCACAAGGATG+TGG + chr8_2:52584953-52584972 Msa1254470:CDS 35.0%
GACATTGAGTAGTTGAATAC+TGG - chr8_2:52584992-52585011 None:intergenic 35.0%
ATTAACTGACCATGATTGCT+AGG - chr8_2:52585046-52585065 None:intergenic 35.0%
TGTTAGCTGCAGTTACAATA+TGG + chr8_2:52585105-52585124 Msa1254470:intron 35.0%
TTGATACTAGAAAAGAGCCA+CGG + chr8_2:52585160-52585179 Msa1254470:intron 35.0%
! GACTCATATTCGTTGATAAG+TGG + chr8_2:52585213-52585232 Msa1254470:intron 35.0%
TTGAGGATCAACTTGTAAAC+TGG + chr8_2:52585244-52585263 Msa1254470:intron 35.0%
TATAGCAAACACTTCGTTGT+GGG + chr8_2:52585314-52585333 Msa1254470:intron 35.0%
GCCGATTAATCCAACAAAAT+TGG - chr8_2:52585471-52585490 None:intergenic 35.0%
! GGATTAATCGGCCATTATTT+TGG + chr8_2:52585479-52585498 Msa1254470:intron 35.0%
GTTATGCTAGCTATCTTGAT+TGG + chr8_2:52585511-52585530 Msa1254470:CDS 35.0%
TCTTTGTGAAATGCCATGTT+AGG - chr8_2:52585549-52585568 None:intergenic 35.0%
AGCCAAACTATTTAGAGACT+TGG - chr8_2:52585581-52585600 None:intergenic 35.0%
TCATGGATTCATACATCTGT+GGG - chr8_2:52585862-52585881 None:intergenic 35.0%
ACAGATGTATGAATCCATGA+GGG + chr8_2:52585862-52585881 Msa1254470:intron 35.0%
ACTCGATAACTGTCAAGTAT+AGG + chr8_2:52585924-52585943 Msa1254470:CDS 35.0%
TCAAGTCTCTATGAAATGCT+TGG - chr8_2:52585961-52585980 None:intergenic 35.0%
AGCATTTCATAGAGACTTGA+AGG + chr8_2:52585961-52585980 Msa1254470:CDS 35.0%
GCTATACTTATTGAGTCTTC+GGG - chr8_2:52586145-52586164 None:intergenic 35.0%
GAAGACTCAATAAGTATAGC+TGG + chr8_2:52586145-52586164 Msa1254470:CDS 35.0%
!! TAAAAGCATTGTTGCAGTTG+TGG + chr8_2:52586273-52586292 Msa1254470:CDS 35.0%
!! AAAAGCATTGTTGCAGTTGT+GGG + chr8_2:52586274-52586293 Msa1254470:CDS 35.0%
ACAACTGCACTTTATAGTGT+AGG + chr8_2:52586301-52586320 Msa1254470:CDS 35.0%
CAACTGCACTTTATAGTGTA+GGG + chr8_2:52586302-52586321 Msa1254470:CDS 35.0%
!! GAACTAGTTGATAAGCATAG+TGG + chr8_2:52586337-52586356 Msa1254470:CDS 35.0%
TATGTATTTGACCTCTCAAG+AGG + chr8_2:52586363-52586382 Msa1254470:CDS 35.0%
ATGTATTTGACCTCTCAAGA+GGG + chr8_2:52586364-52586383 Msa1254470:CDS 35.0%
ACGTGGCTAAAGAAAACATA+CGG + chr8_2:52586496-52586515 Msa1254470:CDS 35.0%
TCTTCATGAACTTCATGACT+TGG - chr8_2:52586535-52586554 None:intergenic 35.0%
TTATATGGATGAGTAAAGGC+CGG + chr8_2:52586699-52586718 Msa1254470:intron 35.0%
AGTCTGTTTGACAGAATTGA+TGG + chr8_2:52586767-52586786 Msa1254470:intron 35.0%
! ACCAAGAAAGCATATAATGG+GGG + chr8_2:52587362-52587381 Msa1254470:CDS 35.0%
TGAAAGAGCCTTCAAAACAT+TGG + chr8_2:52587392-52587411 Msa1254470:CDS 35.0%
TCACTGTGTATTATCGTCAT+TGG + chr8_2:52587432-52587451 Msa1254470:CDS 35.0%
! ATTGACAGATGGAGTATCAA+AGG + chr8_2:52587473-52587492 Msa1254470:CDS 35.0%
GCCAATTTCTTGCAAATATG+AGG + chr8_2:52587571-52587590 Msa1254470:CDS 35.0%
! GCTCTTCATAGCATTTTCTT+TGG + chr8_2:52587673-52587692 Msa1254470:intron 35.0%
ATTCAGTAAATGGAGCAATG+CGG - chr8_2:52587825-52587844 None:intergenic 35.0%
GCAAGGTGATATATAAGCTA+AGG + chr8_2:52587861-52587880 Msa1254470:intron 35.0%
GATGAGTAAGAAACTTGTAG+AGG - chr8_2:52588169-52588188 None:intergenic 35.0%
ATGATATGCCAAAGCTAGTT+CGG + chr8_2:52588206-52588225 Msa1254470:CDS 35.0%
!! AGTTAAGATTAGCCTTCCAT+CGG - chr8_2:52588381-52588400 None:intergenic 35.0%
!! GTTCTCATGTTGCTTCATTT+TGG - chr8_2:52588524-52588543 None:intergenic 35.0%
CTAGACTAGTGTCAAAAACA+TGG - chr8_2:52588705-52588724 None:intergenic 35.0%
AACACAGAATCCCATTTACT+CGG - chr8_2:52588865-52588884 None:intergenic 35.0%
!! ATGCTGATTTGTTTGCTCAA+AGG - chr8_2:52588979-52588998 None:intergenic 35.0%
! GTGGCATTCAAAAGACTTTT+CGG - chr8_2:52589027-52589046 None:intergenic 35.0%
! AAAAGTCTTTTGAATGCCAC+TGG + chr8_2:52589027-52589046 Msa1254470:three_prime_UTR 35.0%
ATAATCGCATTAGTGTTCCT+GGG - chr8_2:52589534-52589553 None:intergenic 35.0%
TATAATCGCATTAGTGTTCC+TGG - chr8_2:52589535-52589554 None:intergenic 35.0%
!! AAGAAGTGTCATATCAATGC+AGG + chr8_2:52589692-52589711 Msa1254470:intron 35.0%
TCCAAGTGGTTACAGAAAAA+CGG + chr8_2:52589756-52589775 Msa1254470:three_prime_UTR 35.0%
! AATTTAGAATTCAGACCCTC+CGG - chr8_2:52589894-52589913 None:intergenic 35.0%
TAGACTTGAGCACAGATATA+TGG + chr8_2:52589973-52589992 Msa1254470:three_prime_UTR 35.0%
! GGTTCTGACATATCTGAAAT+TGG + chr8_2:52590275-52590294 Msa1254470:three_prime_UTR 35.0%
TCTAATCTTGTAACTGCCAA+TGG + chr8_2:52590302-52590321 Msa1254470:three_prime_UTR 35.0%
! TTCTCTTTGTTTGTCTCCAT+TGG - chr8_2:52590321-52590340 None:intergenic 35.0%
GCAAAAGGTGAAGATTCTAA+AGG + chr8_2:52590446-52590465 Msa1254470:three_prime_UTR 35.0%
CTAAAGGTAGTGAAACAAGT+AGG + chr8_2:52590462-52590481 Msa1254470:three_prime_UTR 35.0%
GGTTCAAGTAAAGCTATGAA+TGG + chr8_2:52590491-52590510 Msa1254470:three_prime_UTR 35.0%
ATTGTGTTTCTTTCAACACC+AGG - chr8_2:52590665-52590684 None:intergenic 35.0%
GAATAGATTTGCACCTTGTT+TGG + chr8_2:52590778-52590797 Msa1254470:intron 35.0%
AATAAAGCAGATGCCAAAGA+TGG + chr8_2:52590853-52590872 Msa1254470:intron 35.0%
TGAAGCCAAATGTTTAGAAG+TGG + chr8_2:52590973-52590992 Msa1254470:three_prime_UTR 35.0%
GAAGCCAAATGTTTAGAAGT+GGG + chr8_2:52590974-52590993 Msa1254470:three_prime_UTR 35.0%
! ACCAATTGACTTTAAGCTGA+TGG + chr8_2:52591018-52591037 Msa1254470:three_prime_UTR 35.0%
TCCATCAGCTTAAAGTCAAT+TGG - chr8_2:52591022-52591041 None:intergenic 35.0%
TCTCTTTGTGAGTGAAAGAA+TGG - chr8_2:52591050-52591069 None:intergenic 35.0%
! TGATGATGCTAACAAAGGAT+TGG + chr8_2:52591091-52591110 Msa1254470:three_prime_UTR 35.0%
GTATACATTCGAAGTCATGT+TGG - chr8_2:52591161-52591180 None:intergenic 35.0%
GCAGGAATGTTAGAAACAAA+TGG - chr8_2:52591362-52591381 None:intergenic 35.0%
ATACTCTGAATTTGGTACCG+TGG - chr8_2:52584180-52584199 None:intergenic 40.0%
! TTCAGAGTATCTCCAAACAC+AGG + chr8_2:52584190-52584209 Msa1254470:five_prime_UTR 40.0%
GGTTATGTGGCTATTACTGT+GGG - chr8_2:52584237-52584256 None:intergenic 40.0%
TGGTTATGTGGCTATTACTG+TGG - chr8_2:52584238-52584257 None:intergenic 40.0%
TCTAAACATGCCAACTGTCT+AGG + chr8_2:52584272-52584291 Msa1254470:five_prime_UTR 40.0%
ATGTTGTGTACCTAGACAGT+TGG - chr8_2:52584285-52584304 None:intergenic 40.0%
CTCGAATTGCATGGAAGATA+TGG - chr8_2:52584363-52584382 None:intergenic 40.0%
TTATGCAGACTCGAATTGCA+TGG - chr8_2:52584372-52584391 None:intergenic 40.0%
GCCATAGTAGAACTTGAATC+TGG - chr8_2:52584852-52584871 None:intergenic 40.0%
ATCAAAAACGTGCATGCACT+TGG - chr8_2:52584877-52584896 None:intergenic 40.0%
!! TTCTGTGTTTTGCCACTTGT+TGG + chr8_2:52584904-52584923 Msa1254470:CDS 40.0%
AGGCAGAAGAAAATTCCACA+AGG + chr8_2:52584947-52584966 Msa1254470:CDS 40.0%
! CTTCTTTTTCCACATCCTTG+TGG - chr8_2:52584965-52584984 None:intergenic 40.0%
AAAAGAGCCACGGTTATTGA+AGG + chr8_2:52585170-52585189 Msa1254470:intron 40.0%
CACTAATCCTTCAATAACCG+TGG - chr8_2:52585180-52585199 None:intergenic 40.0%
!! CACAACGAAGTGTTTGCTAT+AGG - chr8_2:52585315-52585334 None:intergenic 40.0%
CTATAGCAAACACTTCGTTG+TGG + chr8_2:52585313-52585332 Msa1254470:intron 40.0%
ATAGCAAACACTTCGTTGTG+GGG + chr8_2:52585315-52585334 Msa1254470:intron 40.0%
GTCTACTCACTATCCTAACA+TGG + chr8_2:52585533-52585552 Msa1254470:CDS 40.0%
ATGTTCCACATCCTCAAGAT+GGG - chr8_2:52585634-52585653 None:intergenic 40.0%
AATGTTCCACATCCTCAAGA+TGG - chr8_2:52585635-52585654 None:intergenic 40.0%
GAGTATGTTATCAGAAGCCA+CGG + chr8_2:52585700-52585719 Msa1254470:CDS 40.0%
CTCATGGATTCATACATCTG+TGG - chr8_2:52585863-52585882 None:intergenic 40.0%
CACAGATGTATGAATCCATG+AGG + chr8_2:52585861-52585880 Msa1254470:intron 40.0%
ATAGCAACAAGTCTGCGATT+TGG + chr8_2:52586059-52586078 Msa1254470:CDS 40.0%
GAACAACTTGATCCTGTCAA+TGG + chr8_2:52586088-52586107 Msa1254470:CDS 40.0%
TAGTGTAGGGCAGTTAATGA+AGG + chr8_2:52586315-52586334 Msa1254470:CDS 40.0%
TGTAAGTAGAGGGTCATTTG+TGG - chr8_2:52586407-52586426 None:intergenic 40.0%
!! TCAACAGCCATTTTAAGCTC+AGG - chr8_2:52586445-52586464 None:intergenic 40.0%
CGTGGCTAAAGAAAACATAC+GGG + chr8_2:52586497-52586516 Msa1254470:CDS 40.0%
! CATGAACTTCATGACTTGGA+GGG - chr8_2:52586531-52586550 None:intergenic 40.0%
! TCATGAACTTCATGACTTGG+AGG - chr8_2:52586532-52586551 None:intergenic 40.0%
AAGTTCATGAAGAGAATGCC+AGG + chr8_2:52586542-52586561 Msa1254470:CDS 40.0%
ATCTACTTGCATGAGCACTT+TGG + chr8_2:52586953-52586972 Msa1254470:intron 40.0%
GAGCACTTATGAGACTGTTT+AGG + chr8_2:52587006-52587025 Msa1254470:intron 40.0%
CTTATTTCAGTAAGCTCTCC+AGG + chr8_2:52587075-52587094 Msa1254470:intron 40.0%
! AAGCGCTGTTTATCCAAACA+AGG + chr8_2:52587155-52587174 Msa1254470:intron 40.0%
TTGTTTATCCAAACAAGCCC+AGG + chr8_2:52587236-52587255 Msa1254470:intron 40.0%
TCCCCCATTATATGCTTTCT+TGG - chr8_2:52587366-52587385 None:intergenic 40.0%
! AAGAAAGCATATAATGGGGG+AGG + chr8_2:52587365-52587384 Msa1254470:CDS 40.0%
ACACGAAACTGTAATGCCAT+CGG - chr8_2:52587642-52587661 None:intergenic 40.0%
TGCATTACAGTCATGAACTG+AGG + chr8_2:52587696-52587715 Msa1254470:intron 40.0%
TATAGCACATAGGTGGAATC+TGG + chr8_2:52587984-52588003 Msa1254470:intron 40.0%
TGGAAAACTTGTCCTAGAAG+AGG + chr8_2:52588004-52588023 Msa1254470:CDS 40.0%
AGTCAAATTCTGCCTCTTCT+AGG - chr8_2:52588019-52588038 None:intergenic 40.0%
! GAAGAGGCAGAATTTGACTT+TGG + chr8_2:52588020-52588039 Msa1254470:CDS 40.0%
! AGGCAGAATTTGACTTTGGA+AGG + chr8_2:52588024-52588043 Msa1254470:CDS 40.0%
! GGCAGAATTTGACTTTGGAA+GGG + chr8_2:52588025-52588044 Msa1254470:CDS 40.0%
! ACTTTGGAAGGGAACTTGAA+GGG + chr8_2:52588036-52588055 Msa1254470:CDS 40.0%
TGATATGCCAAAGCTAGTTC+GGG + chr8_2:52588207-52588226 Msa1254470:CDS 40.0%
!! ATTAAGCACTGAAACTCCGA+TGG + chr8_2:52588362-52588381 Msa1254470:intron 40.0%
TCTGTCAAATGGTTTACAGC+CGG + chr8_2:52588400-52588419 Msa1254470:intron 40.0%
TCCTCTCAGAATAATGTGAC+CGG - chr8_2:52588422-52588441 None:intergenic 40.0%
! GTCACATTATTCTGAGAGGA+TGG + chr8_2:52588422-52588441 Msa1254470:CDS 40.0%
CATATCAACTGTGCATCTGT+AGG + chr8_2:52588832-52588851 Msa1254470:intron 40.0%
!! TAGGTATTGACCCGAGTAAA+TGG + chr8_2:52588851-52588870 Msa1254470:intron 40.0%
!! AGGTATTGACCCGAGTAAAT+GGG + chr8_2:52588852-52588871 Msa1254470:intron 40.0%
ACACAGAATCCCATTTACTC+GGG - chr8_2:52588864-52588883 None:intergenic 40.0%
! ACCTTTTCTCATTTCAGGCA+CGG + chr8_2:52589073-52589092 Msa1254470:three_prime_UTR 40.0%
TCTTTGCATTGTCAGATCCT+TGG + chr8_2:52589111-52589130 Msa1254470:three_prime_UTR 40.0%
CCTAAGATTCTTACTCACCA+AGG - chr8_2:52589131-52589150 None:intergenic 40.0%
! ACTATTTGACAGAAGAGTGC+AGG + chr8_2:52589175-52589194 Msa1254470:intron 40.0%
GACTTGACAATGTTGTTCTG+TGG - chr8_2:52589584-52589603 None:intergenic 40.0%
AATGGTGAGTAGTATCACCT+TGG + chr8_2:52589624-52589643 Msa1254470:intron 40.0%
!! TCACTATGGAAGCATCTGAA+TGG + chr8_2:52589784-52589803 Msa1254470:three_prime_UTR 40.0%
!! ATGGAAGCATCTGAATGGAA+TGG + chr8_2:52589789-52589808 Msa1254470:three_prime_UTR 40.0%
TGGAGACAAACAAAGAGAAG+AGG + chr8_2:52590322-52590341 Msa1254470:three_prime_UTR 40.0%
!! CTTTTCTGGTATAGTGACGA+TGG - chr8_2:52590362-52590381 None:intergenic 40.0%
AGTGAAACAAGTAGGGTTAG+TGG + chr8_2:52590470-52590489 Msa1254470:three_prime_UTR 40.0%
AATGGAAAGAAGTCTCTCGA+AGG + chr8_2:52590509-52590528 Msa1254470:three_prime_UTR 40.0%
TACAGCAGTAATTCAAAGGG+TGG + chr8_2:52590556-52590575 Msa1254470:three_prime_UTR 40.0%
!! CTTGATCCTAATGGATTGTC+AGG + chr8_2:52590724-52590743 Msa1254470:three_prime_UTR 40.0%
CACATACCTGACAATCCATT+AGG - chr8_2:52590733-52590752 None:intergenic 40.0%
CATGCCCACTTCTAAACATT+TGG - chr8_2:52590981-52591000 None:intergenic 40.0%
CAAATGTTTAGAAGTGGGCA+TGG + chr8_2:52590979-52590998 Msa1254470:three_prime_UTR 40.0%
GCTATTACTGTGGGAACAGT+AGG - chr8_2:52584228-52584247 None:intergenic 45.0%
ATCCTACTACAGTGTCTTCG+TGG + chr8_2:52585016-52585035 Msa1254470:CDS 45.0%
AACCACGAAGACACTGTAGT+AGG - chr8_2:52585021-52585040 None:intergenic 45.0%
GATAAGTGGGAAGACACTTG+AGG + chr8_2:52585227-52585246 Msa1254470:intron 45.0%
TAGCAAACACTTCGTTGTGG+GGG + chr8_2:52585316-52585335 Msa1254470:intron 45.0%
CACTCAAGCAGAAAGAGTTG+AGG + chr8_2:52585732-52585751 Msa1254470:CDS 45.0%
!! ACAAGTCTGCGATTTGGTAC+CGG + chr8_2:52586065-52586084 Msa1254470:CDS 45.0%
! TGACAGGATCAAGTTGTTCC+CGG - chr8_2:52586087-52586106 None:intergenic 45.0%
! CCAATTTTCTCGCCATTGAC+AGG - chr8_2:52586103-52586122 None:intergenic 45.0%
CCTGTCAATGGCGAGAAAAT+TGG + chr8_2:52586100-52586119 Msa1254470:CDS 45.0%
GGCAATGCTGCTGAAAGTAA+CGG - chr8_2:52586235-52586254 None:intergenic 45.0%
! GTTACTTTCAGCAGCATTGC+CGG + chr8_2:52586234-52586253 Msa1254470:CDS 45.0%
AAGCAAATAGCCCTCTTGAG+AGG - chr8_2:52586377-52586396 None:intergenic 45.0%
! ATTTGTGTCCTGGGCTTGTT+TGG - chr8_2:52587247-52587266 None:intergenic 45.0%
TATTACACCCACCTGCACAA+AGG - chr8_2:52587337-52587356 None:intergenic 45.0%
TCACCTCGAAGCAAGAAGAA+AGG + chr8_2:52587524-52587543 Msa1254470:CDS 45.0%
AATCCGATTACTGCTGCCAT+CGG - chr8_2:52587725-52587744 None:intergenic 45.0%
! GACTTTGGAAGGGAACTTGA+AGG + chr8_2:52588035-52588054 Msa1254470:CDS 45.0%
GATATGCCAAAGCTAGTTCG+GGG + chr8_2:52588208-52588227 Msa1254470:CDS 45.0%
! TGGTTTGAAGTTGACGACAC+AGG + chr8_2:52588586-52588605 Msa1254470:CDS 45.0%
TCCGTGCCTGAAATGAGAAA+AGG - chr8_2:52589077-52589096 None:intergenic 45.0%
! TTTTCTCATTTCAGGCACGG+AGG + chr8_2:52589076-52589095 Msa1254470:three_prime_UTR 45.0%
GACAATGCAAAGACCAAGAC+CGG - chr8_2:52589104-52589123 None:intergenic 45.0%
ATTGTCAAAAAGGAAGGCCC+AGG + chr8_2:52589514-52589533 Msa1254470:three_prime_UTR 45.0%
!!! GCCGTTTTTCTGTAACCACT+TGG - chr8_2:52589760-52589779 None:intergenic 45.0%
ACGCGAGAGCGAAATTTGTA+TGG + chr8_2:52590027-52590046 Msa1254470:three_prime_UTR 45.0%
! TTACGGTATTGGACGAGTCA+TGG - chr8_2:52590061-52590080 None:intergenic 45.0%
CTCGTCCAATACCGTAAAGA+CGG + chr8_2:52590064-52590083 Msa1254470:three_prime_UTR 45.0%
AAGCTCCGTCTTTACGGTAT+TGG - chr8_2:52590072-52590091 None:intergenic 45.0%
TGTGATGTTGCAAGCTCAGA+TGG + chr8_2:52590254-52590273 Msa1254470:three_prime_UTR 45.0%
AGAAGTCTCTCGAAGGTTTG+AGG + chr8_2:52590516-52590535 Msa1254470:three_prime_UTR 45.0%
AAGCAGATGCCAAAGATGGA+TGG + chr8_2:52590857-52590876 Msa1254470:intron 45.0%
GCCAAAGATGGATGGATATG+AGG + chr8_2:52590865-52590884 Msa1254470:three_prime_UTR 45.0%
GCCTCATATCCATCCATCTT+TGG - chr8_2:52590869-52590888 None:intergenic 45.0%
TAAGAGCGACGATTGGAATG+TGG - chr8_2:52590931-52590950 None:intergenic 45.0%
ACATTCGAAGTCATGTTGGG+AGG - chr8_2:52591157-52591176 None:intergenic 45.0%
!!! TTTTTCTTTTATAAAATAAT+TGG - chr8_2:52588803-52588822 None:intergenic 5.0%
ACTTCGTTGTGGGGGATGTA+AGG + chr8_2:52585324-52585343 Msa1254470:intron 50.0%
GTGGGGGATGTAAGGACAAT+AGG + chr8_2:52585332-52585351 Msa1254470:intron 50.0%
GTTGCAGAAGTTCGTAACGC+AGG - chr8_2:52585609-52585628 None:intergenic 50.0%
TTCTGCAACGTCCCATCTTG+AGG + chr8_2:52585620-52585639 Msa1254470:CDS 50.0%
AACGTCCCATCTTGAGGATG+TGG + chr8_2:52585626-52585645 Msa1254470:CDS 50.0%
ATCAGAAGCCACGGTAACCA+AGG + chr8_2:52585709-52585728 Msa1254470:CDS 50.0%
CTCTTTCTGCTTGAGTGCCT+TGG - chr8_2:52585729-52585748 None:intergenic 50.0%
AATCCATGAGGGCTGTCACA+TGG + chr8_2:52585873-52585892 Msa1254470:CDS 50.0%
ATCCATGAGGGCTGTCACAT+GGG + chr8_2:52585874-52585893 Msa1254470:CDS 50.0%
!! CAAGTCTGCGATTTGGTACC+GGG + chr8_2:52586066-52586085 Msa1254470:CDS 50.0%
TACCTGACGGTGTAGCTTCA+TGG + chr8_2:52586179-52586198 Msa1254470:CDS 50.0%
AGCTTCATGGCACGTTTCTG+TGG + chr8_2:52586192-52586211 Msa1254470:CDS 50.0%
GCTTCATGGCACGTTTCTGT+GGG + chr8_2:52586193-52586212 Msa1254470:CDS 50.0%
! TTTCAGCAGCATTGCCGGTT+TGG + chr8_2:52586239-52586258 Msa1254470:CDS 50.0%
!! TTCAGCAGCATTGCCGGTTT+GGG + chr8_2:52586240-52586259 Msa1254470:CDS 50.0%
TAATAAGAGAGGGAGCGACG+TGG + chr8_2:52586479-52586498 Msa1254470:CDS 50.0%
CATGAAGAGAATGCCAGGCT+AGG + chr8_2:52586547-52586566 Msa1254470:CDS 50.0%
ATATTGCTGGTGACCTAGCC+TGG - chr8_2:52586563-52586582 None:intergenic 50.0%
!! GGTTGGCTTAACCTTTGTGC+AGG + chr8_2:52587323-52587342 Msa1254470:intron 50.0%
TGGCTTAACCTTTGTGCAGG+TGG + chr8_2:52587326-52587345 Msa1254470:intron 50.0%
GGCTTAACCTTTGTGCAGGT+GGG + chr8_2:52587327-52587346 Msa1254470:intron 50.0%
CCTCGAAGCAAGAAGAAAGG+CGG + chr8_2:52587527-52587546 Msa1254470:CDS 50.0%
TCATGAACTGAGGACACCGA+TGG + chr8_2:52587706-52587725 Msa1254470:CDS 50.0%
ACACCGATGGCAGCAGTAAT+CGG + chr8_2:52587719-52587738 Msa1254470:CDS 50.0%
! GAATCTCCCCGAACTAGCTT+TGG - chr8_2:52588217-52588236 None:intergenic 50.0%
! AGCACTGAAACTCCGATGGA+AGG + chr8_2:52588366-52588385 Msa1254470:intron 50.0%
GCCGGTCACATTATTCTGAG+AGG + chr8_2:52588418-52588437 Msa1254470:intron 50.0%
ACCCTGGAGCAGAAGCAATT+CGG + chr8_2:52588484-52588503 Msa1254470:CDS 50.0%
TCCGAATTGCTTCTGCTCCA+GGG - chr8_2:52588488-52588507 None:intergenic 50.0%
ATCCGAATTGCTTCTGCTCC+AGG - chr8_2:52588489-52588508 None:intergenic 50.0%
! TGCCACTGGCTGAAGATACA+CGG + chr8_2:52589041-52589060 Msa1254470:three_prime_UTR 50.0%
TGTTGTTCTGTGGCATCCAC+AGG - chr8_2:52589574-52589593 None:intergenic 50.0%
GTGAACTCAGTGCAGTTCCA+AGG - chr8_2:52589644-52589663 None:intergenic 50.0%
CAGGTACTTCTTGCACTGCA+TGG + chr8_2:52589711-52589730 Msa1254470:intron 50.0%
GTGGTTACAGAAAAACGGCG+TGG + chr8_2:52589761-52589780 Msa1254470:three_prime_UTR 50.0%
GAAAAACGGCGTGGTCACTA+TGG + chr8_2:52589770-52589789 Msa1254470:three_prime_UTR 50.0%
TGATGCTCACTTTCCAGCTC+CGG + chr8_2:52589872-52589891 Msa1254470:three_prime_UTR 50.0%
CTCTCGCGTAGTACTTGTGA+AGG - chr8_2:52590016-52590035 None:intergenic 50.0%
CTTGCGAAGCTCCGTCTTTA+CGG - chr8_2:52590078-52590097 None:intergenic 50.0%
AAGACGGAGCTTCGCAAGAA+AGG + chr8_2:52590080-52590099 Msa1254470:three_prime_UTR 50.0%
! CAGGCAGTGGATGCTCTAAA+TGG + chr8_2:52590635-52590654 Msa1254470:three_prime_UTR 50.0%
! GATGCTCTAAATGGCATGCC+TGG + chr8_2:52590644-52590663 Msa1254470:three_prime_UTR 50.0%
TGAGCTGTAAGAGCGACGAT+TGG - chr8_2:52590938-52590957 None:intergenic 50.0%
! AAAAGGAGTGTGGGGCACCA+CGG + chr8_2:52584160-52584179 Msa1254470:five_prime_UTR 55.0%
CGTGGTTCGCCTAGCAATCA+TGG + chr8_2:52585034-52585053 Msa1254470:CDS 55.0%
CTTGAGTGCCTTGGTTACCG+TGG - chr8_2:52585720-52585739 None:intergenic 55.0%
GGCCTGTCTCAAGTACCTGA+CGG + chr8_2:52586166-52586185 Msa1254470:CDS 55.0%
CACCGTCAGGTACTTGAGAC+AGG - chr8_2:52586171-52586190 None:intergenic 55.0%
TGCCATGAAGCTACACCGTC+AGG - chr8_2:52586184-52586203 None:intergenic 55.0%
CCGCCTTTCTTCTTGCTTCG+AGG - chr8_2:52587530-52587549 None:intergenic 55.0%
CGAAGCAAGAAGAAAGGCGG+AGG + chr8_2:52587530-52587549 Msa1254470:CDS 55.0%
GAAGTTGACGACACAGGCTG+TGG + chr8_2:52588592-52588611 Msa1254470:CDS 55.0%
CTCCGTGTATCTTCAGCCAG+TGG - chr8_2:52589046-52589065 None:intergenic 55.0%
CATGCGACTAACTGCACCTG+TGG + chr8_2:52589555-52589574 Msa1254470:three_prime_UTR 55.0%
ACCGTTGTTGCTGTAGGCGA+CGG + chr8_2:52590608-52590627 Msa1254470:three_prime_UTR 55.0%
TCCGTCGCCTACAGCAACAA+CGG - chr8_2:52590612-52590631 None:intergenic 55.0%
TGCCCATGTGACAGCCCTCA+TGG - chr8_2:52585879-52585898 None:intergenic 60.0%
TCGGGGAGATTCTGCGAGAG+TGG + chr8_2:52588225-52588244 Msa1254470:CDS 60.0%
! CATTTCAGGCACGGAGGCAC+CGG + chr8_2:52589082-52589101 Msa1254470:three_prime_UTR 60.0%
TGCTCACTTTCCAGCTCCGG+AGG + chr8_2:52589875-52589894 Msa1254470:three_prime_UTR 60.0%
GCTCACTTTCCAGCTCCGGA+GGG + chr8_2:52589876-52589895 Msa1254470:three_prime_UTR 60.0%
GAATTCAGACCCTCCGGAGC+TGG - chr8_2:52589888-52589907 None:intergenic 60.0%
GGAGCCACCGTTGTTGCTGT+AGG + chr8_2:52590602-52590621 Msa1254470:three_prime_UTR 60.0%
GTCGCCTACAGCAACAACGG+TGG - chr8_2:52590609-52590628 None:intergenic 60.0%
TGCTGTAGGCGACGGACAAC+AGG + chr8_2:52590616-52590635 Msa1254470:three_prime_UTR 60.0%
AGGCGACGGACAACAGGCAG+TGG + chr8_2:52590622-52590641 Msa1254470:three_prime_UTR 65.0%
!! AGGCACGGAGGCACCGGTCT+TGG + chr8_2:52589088-52589107 Msa1254470:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52584151 52591394 52584151 ID=Msa1254470;Name=Msa1254470
chr8_2 mRNA 52584151 52591394 52584151 ID=Msa1254470-mRNA-1;Parent=Msa1254470;Name=Msa1254470-mRNA-1;_AED=0.11;_eAED=0.11;_QI=716|1|1|1|1|0.91|12|1910|694
chr8_2 exon 52584151 52585055 52584151 ID=Msa1254470-mRNA-1:exon:16147;Parent=Msa1254470-mRNA-1
chr8_2 exon 52585511 52585753 52585511 ID=Msa1254470-mRNA-1:exon:16148;Parent=Msa1254470-mRNA-1
chr8_2 exon 52585866 52586624 52585866 ID=Msa1254470-mRNA-1:exon:16149;Parent=Msa1254470-mRNA-1
chr8_2 exon 52587345 52587592 52587345 ID=Msa1254470-mRNA-1:exon:16150;Parent=Msa1254470-mRNA-1
chr8_2 exon 52587706 52587865 52587706 ID=Msa1254470-mRNA-1:exon:16151;Parent=Msa1254470-mRNA-1
chr8_2 exon 52587996 52588122 52587996 ID=Msa1254470-mRNA-1:exon:16152;Parent=Msa1254470-mRNA-1
chr8_2 exon 52588206 52588295 52588206 ID=Msa1254470-mRNA-1:exon:16153;Parent=Msa1254470-mRNA-1
chr8_2 exon 52588419 52588613 52588419 ID=Msa1254470-mRNA-1:exon:16154;Parent=Msa1254470-mRNA-1
chr8_2 exon 52588854 52589132 52588854 ID=Msa1254470-mRNA-1:exon:16155;Parent=Msa1254470-mRNA-1
chr8_2 exon 52589487 52589627 52589487 ID=Msa1254470-mRNA-1:exon:16156;Parent=Msa1254470-mRNA-1
chr8_2 exon 52589714 52590745 52589714 ID=Msa1254470-mRNA-1:exon:16157;Parent=Msa1254470-mRNA-1
chr8_2 exon 52590863 52591394 52590863 ID=Msa1254470-mRNA-1:exon:16158;Parent=Msa1254470-mRNA-1
chr8_2 five_prime_UTR 52584151 52584866 52584151 ID=Msa1254470-mRNA-1:five_prime_utr;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52584867 52585055 52584867 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52585511 52585753 52585511 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52585866 52586624 52585866 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52587345 52587592 52587345 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52587706 52587865 52587706 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52587996 52588122 52587996 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52588206 52588295 52588206 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52588419 52588613 52588419 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 CDS 52588854 52588927 52588854 ID=Msa1254470-mRNA-1:cds;Parent=Msa1254470-mRNA-1
chr8_2 three_prime_UTR 52588928 52589132 52588928 ID=Msa1254470-mRNA-1:three_prime_utr;Parent=Msa1254470-mRNA-1
chr8_2 three_prime_UTR 52589487 52589627 52589487 ID=Msa1254470-mRNA-1:three_prime_utr;Parent=Msa1254470-mRNA-1
chr8_2 three_prime_UTR 52589714 52590745 52589714 ID=Msa1254470-mRNA-1:three_prime_utr;Parent=Msa1254470-mRNA-1
chr8_2 three_prime_UTR 52590863 52591394 52590863 ID=Msa1254470-mRNA-1:three_prime_utr;Parent=Msa1254470-mRNA-1
Gene Sequence

>Msa1254470

ATGGCTACCAAGTGCATGCACGTTTTTGATAGATTGCTTCTGTGTTTTGCCACTTGTTGGAAGAAAAATAGCACACTAACAGGCAGAAGAAAATTCCACAAGGATGTGGAAAAAGAAGAATTCCAGTATTCAACTACTCAATGTCTCTCATCCTACTACAGTGTCTTCGTGGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACCAAGTCTCTAAATAGTTTGGCTTACGACCTGCGTTACGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAACATTTTGAACTCTACTGCTGAAATCACAACTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCACGGTAACCAAGGCACTCAAGCAGAAAGAGTTGAGATGTATGAATCCATGAGGGCTGTCACATGGGCACTATTTGCTAGTCGAAAAGCTCTCAACTCGATAACTGTCAAGTATAGGAATGGTTTTGTCCAAGCATTTCATAGAGACTTGAAGGATAATAATATTTTTTACATCTACACCGATCTTTCATATAATGAGACCAATTCATTTGCAGCATATGAAGACACTCATAGCAACAAGTCTGCGATTTGGTACCGGGAACAACTTGATCCTGTCAATGGCGAGAAAATTGGAAAAGCAATGAAGATTGCACCCGAAGACTCAATAAGTATAGCTGGCCTGTCTCAAGTACCTGACGGTGTAGCTTCATGGCACGTTTCTGTGGGCAAGTTTACAGATTCACCGTTACTTTCAGCAGCATTGCCGGTTTGGGATTCTTCTAATAAAAGCATTGTTGCAGTTGTGGGAGTTACAACTGCACTTTATAGTGTAGGGCAGTTAATGAAGGAACTAGTTGATAAGCATAGTGGTCATATGTATTTGACCTCTCAAGAGGGCTATTTGCTTGCAACTTCCACAAATGACCCTCTACTTACAAATTCAACAAAGAAACCTGAGCTTAAAATGGCTGTTGACTGTGATAACGAAGTAATAAGAGAGGGAGCGACGTGGCTAAAGAAAACATACGGGAACAATTTCCCTCCAAGTCATGAAGTTCATGAAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATTGACTCATTCTTCCTAATCTTGAAAAAGCTTCCTTTGGTGGGTGTAATAATCATACCAAGAAAGCATATAATGGGGGAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCACTGTGTATTATCGTCATTGGATGTGTTTGCATTTTGATATTGACAGATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTCGAAGCAAGAAGAAAGGCGGAGGCATCGAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATCGGATTACTTGACATTCTTTTGTCGGATGATCATCTCACAAATGAACAATGTGCAACCGTTACTCAAATAAGAAAATGTTCAACCGCATTGCTCCATTTACTGAATAACATCTTGGATATAAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGAGGCAGAATTTGACTTTGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAATGTAGAAATTATTTTAGACCTTTCTGATGATATGCCAAAGCTAGTTCGGGGAGATTCTGCGAGAGTGGTTCAAATTTTTGCAAATTTGATCAATAACTCAATCAAATTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTATGAAAATCCAAATTCTTATGGTGATAGTGAAAATTTTACCCTGGAGCAGAAGCAATTCGGATGTTCTTCGAAGACCAAAATGAAGCAACATGAGAACCATTCAAAGAAGACTTCTAATATTGATAACAAAATGATACTTTGGTTTGAAGTTGACGACACAGGCTGTGGTATTGACCCGAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCTATCAACTACTAGACTGTAA
Protein sequence

>Msa1254470

MATKCMHVFDRLLLCFATCWKKNSTLTGRRKFHKDVEKEEFQYSTTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHGNQGTQAERVEMYESMRAVTWALFASRKALNSITVKYRNGFVQAFHRDLKDNNIFYIYTDLSYNETNSFAAYEDTHSNKSAIWYREQLDPVNGEKIGKAMKIAPEDSISIAGLSQVPDGVASWHVSVGKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVDKHSGHMYLTSQEGYLLATSTNDPLLTNSTKKPELKMAVDCDNEVIREGATWLKKTYGNNFPPSHEVHEENARLGHQQYYIDSFFLILKKLPLVGVIIIPRKHIMGEADERAFKTLVILISASLCIIVIGCVCILILTDGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDHLTNEQCATVTQIRKCSTALLHLLNNILDISKVESGKLVLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWYENPNSYGDSENFTLEQKQFGCSSKTKMKQHENHSKKTSNIDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRL*