AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0186560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186560 MtrunA17_Chr3g0143671 99.632 544 2 0 1 544 1 544 0.0 1114
Msa0186560 MtrunA17_Chr1g0157341 85.055 542 77 1 7 544 2 543 0.0 942
Msa0186560 MtrunA17_Chr4g0038671 74.906 534 133 1 11 544 11 543 0.0 849
Msa0186560 MtrunA17_Chr4g0024861 71.042 518 150 0 23 540 20 537 0.0 793
Msa0186560 MtrunA17_Chr2g0322441 72.921 517 140 0 23 539 23 539 0.0 785
Msa0186560 MtrunA17_Chr4g0075071 70.872 539 156 1 7 544 7 545 0.0 763
Msa0186560 MtrunA17_Chr4g0024641 67.865 445 142 1 92 536 13 456 0.0 644
Msa0186560 MtrunA17_Chr4g0024641 59.302 86 35 0 455 540 871 956 2.42e-26 114
Msa0186560 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 499 580 6.97e-25 109
Msa0186560 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 561 642 6.97e-25 109
Msa0186560 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 623 704 6.97e-25 109
Msa0186560 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 685 766 6.97e-25 109
Msa0186560 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 809 890 6.97e-25 109
Msa0186560 MtrunA17_Chr4g0024641 58.537 82 34 0 455 536 437 518 6.23e-24 106
Msa0186560 MtrunA17_Chr4g0024641 58.537 82 34 0 455 536 747 828 7.85e-24 106
Msa0186560 MtrunA17_Chr8g0374271 60.928 517 199 2 25 540 26 540 0.0 644
Msa0186560 MtrunA17_Chr5g0402831 59.923 519 204 2 22 540 23 537 0.0 627
Msa0186560 MtrunA17_Chr8g0374261 56.809 514 219 3 24 536 23 534 0.0 609
Msa0186560 MtrunA17_Chr4g0043251 53.008 532 241 4 11 534 8 538 0.0 561
Msa0186560 MtrunA17_Chr4g0043261 52.052 536 249 5 3 534 1 532 0.0 560
Msa0186560 MtrunA17_Chr3g0121151 51.481 540 250 5 3 534 42 577 0.0 550
Msa0186560 MtrunA17_Chr3g0121161 51.296 540 251 5 3 534 42 577 0.0 547
Msa0186560 MtrunA17_Chr4g0056511 52.294 545 239 7 11 535 8 551 0.0 533
Msa0186560 MtrunA17_Chr3g0079321 51.705 528 234 7 27 534 26 552 1.01e-180 521
Msa0186560 MtrunA17_Chr7g0234061 52.632 532 226 9 27 537 26 552 6.63e-179 517
Msa0186560 MtrunA17_Chr3g0121171 51.481 540 250 5 3 534 577 1112 7.74e-177 550
Msa0186560 MtrunA17_Chr3g0121171 51.296 540 251 5 3 534 1152 1687 5.46e-176 548
Msa0186560 MtrunA17_Chr3g0121171 52.703 518 236 4 25 534 21 537 2.77e-174 543
Msa0186560 MtrunA17_Chr3g0121171 49.907 537 248 6 6 534 1730 2253 4.51e-165 517
Msa0186560 MtrunA17_Chr1g0197301 48.182 330 168 3 208 534 1 330 4.72e-96 295
Msa0186560 MtrunA17_Chr4g0075781 52.885 208 55 2 134 339 1 167 6.72e-61 198
Msa0186560 MtrunA17_Chr5g0404361 30.351 570 347 18 5 533 51 611 1.84e-60 210
Msa0186560 MtrunA17_Chr5g0404341 29.550 555 335 19 20 533 27 566 2.59e-57 201
Msa0186560 MtrunA17_Chr3g0104061 28.014 564 363 13 5 533 1 556 9.62e-55 193
Msa0186560 MtrunA17_Chr5g0429511 27.866 567 364 16 3 533 1 558 8.82e-54 191
Msa0186560 MtrunA17_Chr5g0436461 28.757 539 341 13 30 533 24 554 1.08e-53 191
Msa0186560 MtrunA17_Chr3g0118321 27.504 589 345 22 5 537 4 566 2.45e-51 184
Msa0186560 MtrunA17_Chr4g0005921 27.437 554 365 12 11 533 10 557 6.53e-50 180
Msa0186560 MtrunA17_Chr1g0197311 40.928 237 100 5 15 212 8 243 5.45e-49 169
Msa0186560 MtrunA17_Chr8g0382691 25.818 581 335 18 20 538 26 572 8.30e-44 164
Msa0186560 MtrunA17_Chr3g0118331 25.823 577 361 17 10 537 7 565 1.59e-43 163
Msa0186560 MtrunA17_Chr5g0431581 28.846 572 342 21 12 533 4 560 2.43e-42 159
Msa0186560 MtrunA17_Chr3g0114211 28.367 490 303 14 51 499 54 536 1.37e-40 154
Msa0186560 MtrunA17_Chr7g0237441 24.357 583 380 16 2 533 8 580 4.03e-40 153
Msa0186560 MtrunA17_Chr2g0278811 26.860 551 333 17 51 533 59 607 1.57e-39 152
Msa0186560 MtrunA17_Chr8g0346581 26.121 513 341 11 30 506 34 544 1.19e-38 149
Msa0186560 MtrunA17_Chr7g0240991 28.827 503 299 20 47 498 42 536 2.03e-38 148
Msa0186560 MtrunA17_Chr7g0238351 23.827 554 367 15 30 533 33 581 9.11e-37 144
Msa0186560 MtrunA17_Chr7g0237491 24.368 554 363 17 30 533 33 580 2.10e-36 142
Msa0186560 MtrunA17_Chr5g0437681 25.992 504 309 15 48 499 42 533 1.57e-35 140
Msa0186560 MtrunA17_Chr7g0238941 24.682 551 362 16 30 533 34 578 4.77e-35 139
Msa0186560 MtrunA17_Chr7g0238981 25.095 526 339 16 21 499 42 559 8.11e-34 135
Msa0186560 MtrunA17_Chr7g0240971 25.824 546 336 18 1 493 1 530 1.81e-33 134
Msa0186560 MtrunA17_Chr4g0031901 25.382 524 320 18 29 499 46 551 4.29e-33 133
Msa0186560 MtrunA17_Chr4g0024651 82.812 64 11 0 23 86 20 83 2.66e-32 119
Msa0186560 MtrunA17_Chr4g0008521 26.316 551 347 16 34 533 30 572 9.68e-32 129
Msa0186560 MtrunA17_Chr3g0118351 22.029 345 217 9 233 537 5 337 1.81e-19 90.1
Msa0186560 MtrunA17_Chr3g0133871 29.714 175 119 4 44 216 46 218 1.76e-18 84.7
Msa0186560 MtrunA17_Chr3g0118341 32.941 170 104 7 11 175 8 172 1.30e-17 81.6
Msa0186560 MtrunA17_Chr3g0133861 28.803 309 177 12 227 499 5 306 1.07e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186560 AT1G76160.1 79.777 539 108 1 6 544 4 541 0.0 908
Msa0186560 AT1G41830.1 79.104 536 111 1 9 544 8 542 0.0 894
Msa0186560 AT1G21850.1 74.187 523 133 2 19 541 18 538 0.0 814
Msa0186560 AT1G21860.1 70.130 539 155 3 2 540 5 537 0.0 796
Msa0186560 AT4G22010.1 69.444 540 161 2 6 544 5 541 0.0 781
Msa0186560 AT4G38420.1 67.844 538 167 3 12 543 12 549 0.0 760
Msa0186560 AT4G28090.1 62.152 539 192 6 9 540 8 541 0.0 692
Msa0186560 AT4G38420.3 66.596 470 151 3 12 475 12 481 0.0 645
Msa0186560 AT5G66920.1 58.189 519 215 1 22 540 29 545 0.0 637
Msa0186560 AT4G38420.2 67.043 443 140 3 12 448 12 454 0.0 608
Msa0186560 AT1G55570.1 54.917 539 233 4 10 539 9 546 0.0 592
Msa0186560 AT3G13400.2 54.851 536 232 5 11 538 9 542 0.0 582
Msa0186560 AT3G13400.1 54.851 536 232 5 11 538 9 542 0.0 582
Msa0186560 AT1G55560.1 53.918 536 237 5 11 538 8 541 0.0 578
Msa0186560 AT4G37160.1 53.817 524 236 3 22 544 23 541 0.0 572
Msa0186560 AT2G23630.2 54.943 526 233 3 17 542 23 544 0.0 569
Msa0186560 AT2G23630.1 54.943 526 233 3 17 542 18 539 0.0 569
Msa0186560 AT3G13390.1 55.556 522 222 4 26 538 24 544 0.0 568
Msa0186560 AT5G48450.1 52.865 541 238 10 12 537 8 546 0.0 546
Msa0186560 AT5G48450.2 52.865 541 238 10 12 537 8 546 0.0 546
Msa0186560 AT4G12420.1 52.102 547 241 7 11 537 6 551 0.0 544
Msa0186560 AT4G12420.2 52.102 547 241 7 11 537 6 551 0.0 544
Msa0186560 AT1G75790.1 49.534 537 260 3 11 536 8 544 0.0 526
Msa0186560 AT4G25240.2 50.452 553 253 8 1 534 1 551 0.0 525
Msa0186560 AT4G25240.1 50.452 553 253 8 1 534 1 551 0.0 525
Msa0186560 AT5G51480.1 49.813 536 248 9 19 534 17 551 0.0 525
Msa0186560 AT4G37160.2 54.673 428 192 2 22 448 23 449 1.56e-165 478
Msa0186560 AT4G39830.1 28.857 551 325 15 11 506 17 555 2.09e-55 196
Msa0186560 AT2G38080.1 27.339 545 352 13 25 533 22 558 4.92e-54 192
Msa0186560 AT5G58910.2 28.196 571 352 16 11 533 7 567 1.84e-52 188
Msa0186560 AT5G21105.1 27.586 551 326 16 12 507 22 554 1.11e-51 186
Msa0186560 AT5G03260.1 28.470 562 352 18 11 533 7 557 1.12e-51 186
Msa0186560 AT5G58910.3 29.032 527 320 15 51 533 50 566 6.20e-51 184
Msa0186560 AT5G21105.3 28.037 535 312 16 12 491 22 538 2.99e-50 181
Msa0186560 AT5G01190.1 27.580 533 354 12 32 533 27 558 1.20e-49 180
Msa0186560 AT5G21100.1 26.715 554 333 17 34 534 28 561 2.56e-49 179
Msa0186560 AT5G01190.2 28.210 514 337 12 51 533 32 544 4.16e-49 178
Msa0186560 AT5G58910.1 28.463 527 316 16 51 533 14 523 1.46e-46 171
Msa0186560 AT2G46570.1 25.603 539 352 13 30 527 32 562 1.89e-41 157
Msa0186560 AT4G39830.3 28.942 463 263 14 98 506 8 458 4.86e-41 155
Msa0186560 AT4G39830.2 28.942 463 263 14 98 506 10 460 5.76e-41 154
Msa0186560 AT2G30210.1 27.788 529 331 16 10 493 8 530 9.61e-41 155
Msa0186560 AT5G05390.1 28.138 494 314 13 44 499 41 531 7.76e-40 152
Msa0186560 AT5G09360.1 28.719 484 303 13 51 498 57 534 1.13e-39 152
Msa0186560 AT5G01050.1 25.508 541 348 13 41 535 39 570 1.17e-38 149
Msa0186560 AT5G01040.1 26.160 539 345 14 41 535 39 568 7.23e-38 147
Msa0186560 AT2G29130.1 25.501 549 359 17 30 533 30 573 9.68e-38 147
Msa0186560 AT5G48100.1 27.146 501 315 16 51 507 43 537 2.50e-37 145
Msa0186560 AT3G09220.1 26.769 523 338 13 10 493 11 527 3.28e-37 145
Msa0186560 AT4G39830.4 28.078 463 254 14 98 506 10 447 9.39e-37 142
Msa0186560 AT5G07130.1 28.063 506 306 16 51 506 45 542 1.34e-36 143
Msa0186560 AT1G18140.1 26.731 520 314 19 32 493 31 541 2.81e-35 140
Msa0186560 AT2G40370.1 25.174 576 375 15 12 533 7 580 3.50e-34 137
Msa0186560 AT2G46570.2 25.519 482 310 13 87 527 4 477 2.35e-33 133
Msa0186560 AT5G21105.2 28.746 327 194 9 206 507 51 363 1.27e-31 126
Msa0186560 AT3G09220.2 26.107 429 278 11 103 493 3 430 1.99e-26 112
Msa0186560 AT5G07130.2 27.155 464 280 16 93 506 2 457 8.48e-26 111
Msa0186560 AT5G07130.3 27.155 464 280 16 93 506 2 457 8.48e-26 111
Msa0186560 AT5G60020.2 25.784 287 194 7 5 279 6 285 3.19e-24 107
Msa0186560 AT5G60020.1 25.784 287 194 7 5 279 6 285 3.35e-24 107
Msa0186560 AT5G60020.3 27.386 241 162 6 51 279 14 253 1.12e-23 105

Find 191 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAAGCAGCTGGCGGTTT+TGG 0.198928 2_1:+1274373 Msa0186560:CDS
TTCATTTGATGTATTGAATA+TGG 0.237506 2_1:+1279143 Msa0186560:three_prime_UTR
GGAGATTACACTGTCCTTAT+TGG 0.249934 2_1:+1274451 Msa0186560:CDS
CCACAGAGACGTGCATTCTT+TGG 0.252281 2_1:-1278768 None:intergenic
GAACAATGTTCTCGTTGTTT+TGG 0.267342 2_1:-1277892 None:intergenic
ACCAGTATTATTATAAAGTA+TGG 0.269501 2_1:+1279072 Msa0186560:three_prime_UTR
TTCCAGTTGAAGAATTTATA+AGG 0.277879 2_1:-1272596 None:intergenic
GGCTACTCTTTCTTTGTTGT+TGG 0.288891 2_1:+1277932 Msa0186560:CDS
GGAACTTGAGGACCGAGTTT+TGG 0.289721 2_1:+1278667 Msa0186560:CDS
GGGAAAGGAACTGGAATTCT+AGG 0.292928 2_1:-1274418 None:intergenic
AGCTCTCCTGGTCAGGTTAA+TGG 0.304843 2_1:+1277680 Msa0186560:CDS
TCATTCGAAGATGGTGTTTC+GGG 0.308208 2_1:+1274253 Msa0186560:CDS
CTCATTCGAAGATGGTGTTT+CGG 0.314795 2_1:+1274252 Msa0186560:CDS
AACTCTGCAGGCGCAGTATC+AGG 0.316792 2_1:+1277168 Msa0186560:CDS
GTGTAATCTCCAGCTGGTTC+AGG 0.327562 2_1:-1274439 None:intergenic
ATCCTTATAAATTCTTCAAC+TGG 0.330656 2_1:+1272594 Msa0186560:CDS
CTTCAAGTGAAGGATCAAAT+TGG 0.340873 2_1:+1274319 Msa0186560:CDS
TGGTAGGATCCTTGTGGGTT+AGG 0.342056 2_1:-1277617 None:intergenic
GTTCAGAGCTATCATCTTGA+TGG 0.346311 2_1:+1277911 Msa0186560:CDS
TAAAGGTATATCCCTATTCA+TGG 0.349134 2_1:+1278607 Msa0186560:intron
TTGATCAATGGGCAATTTCC+TGG 0.354638 2_1:+1272794 Msa0186560:CDS
ATCAATGGTCGTGGACCTAA+TGG 0.358266 2_1:+1276766 Msa0186560:CDS
ATAAATAGCCGTCCATGAAT+AGG 0.359487 2_1:-1278619 None:intergenic
TTGAAGCTTAAGAGCCTGTT+TGG 0.360513 2_1:+1279246 Msa0186560:three_prime_UTR
AAGTTCCTCCCTGGTGGGAT+GGG 0.362034 2_1:-1274286 None:intergenic
GCTACTCTTTCTTTGTTGTT+GGG 0.364251 2_1:+1277933 Msa0186560:CDS
GCGAGCTTAAGAGGCGTGTC+TGG 0.366650 2_1:-1277743 None:intergenic
AAAATTGAAGGGGATTCATT+TGG 0.371109 2_1:-1272262 None:intergenic
GGGAGGGGTCAGAAATGATT+AGG 0.372948 2_1:-1272368 None:intergenic
CACAACAAAGACAATCATTC+TGG 0.374461 2_1:+1277655 Msa0186560:CDS
GATCCTTGTGGGTTAGGCCT+TGG 0.380517 2_1:-1277611 None:intergenic
TAGGTCCACGACCATTGATT+AGG 0.384593 2_1:-1276762 None:intergenic
ACGTTGAATGATAATCCATT+AGG 0.386904 2_1:-1276781 None:intergenic
TAAACCTTTGCTAGCTCAAA+GGG 0.388940 2_1:-1278817 None:intergenic
ACCATACTTTATAATAATAC+TGG 0.392296 2_1:-1279073 None:intergenic
GTTAATGGCAAGCAAAGATA+TGG 0.394297 2_1:+1277695 Msa0186560:CDS
ACACTGTCCTTATTGGTGAT+TGG 0.395975 2_1:+1274458 Msa0186560:CDS
TACAGGGTATATTGATCAAT+GGG 0.402058 2_1:+1272783 Msa0186560:intron
CGAATGAGTTCCTTCTCTGC+TGG 0.403249 2_1:-1274237 None:intergenic
AAGTAATCAGCGAGCTTAAG+AGG 0.406604 2_1:-1277752 None:intergenic
ACTTGTACCAATCACCAATA+AGG 0.411862 2_1:-1274465 None:intergenic
ATCATTCTGGCTAGCTCTCC+TGG 0.412395 2_1:+1277668 Msa0186560:CDS
TAAATAGCCGTCCATGAATA+GGG 0.412871 2_1:-1278618 None:intergenic
CTTCTACCAACTTCAGTTTG+TGG 0.415762 2_1:-1276975 None:intergenic
AATACCTGATTGAGCGGGCT+TGG 0.429385 2_1:-1277236 None:intergenic
TCTGGCTAGCTCTCCTGGTC+AGG 0.435795 2_1:+1277673 Msa0186560:CDS
GAAGTTCCTCCCTGGTGGGA+TGG 0.436120 2_1:-1274287 None:intergenic
GCCTTGGTCCACTTGCTGTA+AGG 0.436164 2_1:-1277595 None:intergenic
TTACAGGGTATATTGATCAA+TGG 0.440666 2_1:+1272782 Msa0186560:intron
GCTGGTTCAGGGAAAGGAAC+TGG 0.441020 2_1:-1274427 None:intergenic
TGAACCAAGCCCGCTCAATC+AGG 0.441372 2_1:+1277232 Msa0186560:CDS
AGACGTGCATTCTTTGGAAT+AGG 0.443501 2_1:-1278762 None:intergenic
ATTGAAAGCCCATCTTGATA+AGG 0.446007 2_1:+1276711 Msa0186560:CDS
AACTGCTGATCAACCTTCTC+AGG 0.451706 2_1:+1277074 Msa0186560:CDS
GACCAATCAACTTGGATTGT+AGG 0.454328 2_1:-1277207 None:intergenic
TTGAAAGCCCATCTTGATAA+GGG 0.458638 2_1:+1276712 Msa0186560:CDS
TGGACAACTTCTAGCAGAAA+CGG 0.460958 2_1:+1278268 Msa0186560:CDS
GTTCCTTTCCCTGAACCAGC+TGG 0.461491 2_1:+1274430 Msa0186560:CDS
ATTAGGACTCCATCAGGTAT+AGG 0.466437 2_1:-1276745 None:intergenic
AGTTCCTCCCTGGTGGGATG+GGG 0.469341 2_1:-1274285 None:intergenic
TAAAAGAGAGGGAAAATTGA+AGG 0.469894 2_1:-1272274 None:intergenic
ACTCTCAATTTAGCTGCTGT+TGG 0.471199 2_1:+1272518 Msa0186560:CDS
GCTTCTTTCCCTTATCAAGA+TGG 0.472069 2_1:-1276720 None:intergenic
CTTCTTTCCCTTATCAAGAT+GGG 0.472616 2_1:-1276719 None:intergenic
AAACGCGTAAATAAAATTGT+TGG 0.475981 2_1:-1278707 None:intergenic
TTTGTAACAGAATGAATGTC+TGG 0.477062 2_1:-1272818 None:intergenic
TACGGTGACATTTACCCACT+TGG 0.481704 2_1:+1272626 Msa0186560:CDS
CGTCTCTGTGGTAGGGCAAG+TGG 0.486667 2_1:+1278780 Msa0186560:CDS
TGTAATCTCCAGCTGGTTCA+GGG 0.488077 2_1:-1274438 None:intergenic
AAGACACCGCGGAAGTGAAA+AGG 0.488846 2_1:-1279201 None:intergenic
CCACAAGGATCCTACCATTA+CGG 0.488883 2_1:+1277623 Msa0186560:CDS
TTCAACTGGAATGTTACTTA+CGG 0.490501 2_1:+1272608 Msa0186560:CDS
TGCTTGCCATTAACCTGACC+AGG 0.497002 2_1:-1277686 None:intergenic
GGAGGGGTCAGAAATGATTA+GGG 0.500859 2_1:-1272367 None:intergenic
CCCACTTGGAGTTCGTCAAA+GGG 0.500885 2_1:+1272640 Msa0186560:CDS
GACCTACAATCCAAGTTGAT+TGG 0.501737 2_1:+1277205 Msa0186560:CDS
GTCTCTGTGGTAGGGCAAGT+GGG 0.506135 2_1:+1278781 Msa0186560:CDS
CAGGAAAGACTTATAGACTT+AGG 0.506224 2_1:+1276905 Msa0186560:intron
CTCCTCACTTGATGTTCATG+TGG 0.506285 2_1:+1277029 Msa0186560:CDS
ATTGTATCATACCGTATGGT+TGG 0.507927 2_1:-1274488 None:intergenic
ACAACATGCCCCATCCCACC+AGG 0.510773 2_1:+1274277 Msa0186560:CDS
TCTCCAGCTGGTTCAGGGAA+AGG 0.511026 2_1:-1274433 None:intergenic
ACCCACTTGGAGTTCGTCAA+AGG 0.514899 2_1:+1272639 Msa0186560:CDS
CTTCGCTATAGCAACTCTGC+AGG 0.516465 2_1:+1277156 Msa0186560:CDS
TCAAAACCACAAACTGAAGT+TGG 0.517789 2_1:+1276969 Msa0186560:CDS
GGACAACTTCTAGCAGAAAC+GGG 0.518926 2_1:+1278269 Msa0186560:CDS
AGTGGTGGTGAGAATCTTAG+AGG 0.523161 2_1:-1277127 None:intergenic
ACTTGGATTGTAGGTCCACC+AGG 0.525149 2_1:-1277198 None:intergenic
ATGAACCCTTTCTCATCTCA+TGG 0.525350 2_1:+1272876 Msa0186560:CDS
CAAACTGAAGTTGGTAGAAG+TGG 0.526063 2_1:+1276978 Msa0186560:CDS
AGGACTAACCTTACAGCAAG+TGG 0.527132 2_1:+1277587 Msa0186560:intron
CCTGATGGAGTCCTAATCAA+TGG 0.528672 2_1:+1276751 Msa0186560:CDS
TCACAGATGTGTCAAGGTAA+AGG 0.529173 2_1:-1277832 None:intergenic
CTAGCATTTCAGAAAGCAGC+TGG 0.529779 2_1:+1274364 Msa0186560:CDS
GGTTCAAAGACCAATCAACT+TGG 0.532843 2_1:-1277215 None:intergenic
CTTGTACCATGAGATGAGAA+AGG 0.533419 2_1:-1272882 None:intergenic
GCTGATTACTTCAAAATCTC+CGG 0.535779 2_1:+1277764 Msa0186560:CDS
CGAGCTTAAGAGGCGTGTCT+GGG 0.536643 2_1:-1277742 None:intergenic
AGAATGCACGTCTCTGTGGT+AGG 0.539128 2_1:+1278772 Msa0186560:CDS
TTAAACCTTTGCTAGCTCAA+AGG 0.539316 2_1:-1278818 None:intergenic
TAGGGAGGTGCGGTGCAAGA+AGG 0.541201 2_1:-1272349 None:intergenic
ATTTCAATGTGTAGTATGGA+TGG 0.541372 2_1:+1278238 Msa0186560:intron
AAGAAGCTTCCTATACCTGA+TGG 0.542552 2_1:+1276736 Msa0186560:CDS
TCTGAGAGACCCACTGGTGG+TGG 0.543627 2_1:+1277809 Msa0186560:CDS
TGCGGTGCAAGAAGGGACTA+AGG 0.544701 2_1:-1272341 None:intergenic
AAGGTAAAGGCCACCACCAG+TGG 0.545521 2_1:-1277819 None:intergenic
AGGAAACTCGTCTCTGATTG+AGG 0.545951 2_1:-1278742 None:intergenic
CCATTGATTAGGACTCCATC+AGG 0.546662 2_1:-1276751 None:intergenic
AAAAGAGAGGGAAAATTGAA+GGG 0.549950 2_1:-1272273 None:intergenic
GTGACAAGGATTGCAGAAGT+TGG 0.550179 2_1:+1279094 Msa0186560:three_prime_UTR
AAGATTCTAGATAATACAAA+GGG 0.551114 2_1:-1279049 None:intergenic
CATCCATTCCATGCTTGAGA+AGG 0.551848 2_1:+1278844 Msa0186560:three_prime_UTR
TTGAAGGGGATTCATTTGGA+AGG 0.552658 2_1:-1272258 None:intergenic
AGAAGGAACTCATTCGAAGA+TGG 0.555890 2_1:+1274244 Msa0186560:CDS
CGTAATGGTAGGATCCTTGT+GGG 0.556156 2_1:-1277622 None:intergenic
CTAGAATGCCTTCTCAAGCA+TGG 0.557137 2_1:-1278852 None:intergenic
AGGGAGGTGCGGTGCAAGAA+GGG 0.557743 2_1:-1272348 None:intergenic
GTAAGCATTGCCGCGTAGAG+AGG 0.558899 2_1:+1272458 Msa0186560:five_prime_UTR
GGAATGGGATCCAGCAGAGA+AGG 0.564212 2_1:+1274227 Msa0186560:intron
GCTTTCTGAAATGCTAGAGA+TGG 0.570090 2_1:-1274358 None:intergenic
TTGTACCATGAGATGAGAAA+GGG 0.571758 2_1:-1272881 None:intergenic
TGTTGAAGACATTGATAATG+AGG 0.576283 2_1:-1272847 None:intergenic
ATGCCTTCTCAAGCATGGAA+TGG 0.576826 2_1:-1278847 None:intergenic
AGCATATCTGAGAGACCCAC+TGG 0.578496 2_1:+1277803 Msa0186560:CDS
CACTTGACAACGTTGGAATG+TGG 0.580641 2_1:+1278646 Msa0186560:CDS
CACTTATATACTTCAAGTGA+AGG 0.581224 2_1:+1274309 Msa0186560:CDS
TATGTTGCACTTGACAACGT+TGG 0.582455 2_1:+1278639 Msa0186560:CDS
GGAGTCCTAATCAATGGTCG+TGG 0.582546 2_1:+1276757 Msa0186560:CDS
AAAATGTTAAAATAAAAGAG+AGG 0.585654 2_1:-1272286 None:intergenic
ATACTGTCGTGCCCAAAACT+CGG 0.586339 2_1:-1278679 None:intergenic
TTATCATTCAACGTTGAACA+AGG 0.591618 2_1:+1276790 Msa0186560:CDS
AATCTTAGAGGAGAATCTTG+TGG 0.591739 2_1:-1277115 None:intergenic
AGGACAGTGTAATCTCCAGC+TGG 0.591788 2_1:-1274445 None:intergenic
GAATGCACGTCTCTGTGGTA+GGG 0.593245 2_1:+1278773 Msa0186560:CDS
AAATGTTAAAATAAAAGAGA+GGG 0.593942 2_1:-1272285 None:intergenic
GTGGTCGTTCTTGATACGAC+AGG 0.597343 2_1:-1278954 None:intergenic
ACCCTTTGACGAACTCCAAG+TGG 0.599197 2_1:-1272641 None:intergenic
AACCTTTGCTAGCTCAAAGG+GGG 0.603610 2_1:-1278815 None:intergenic
AGTAGCAACACATAGAAGCA+AGG 0.603929 2_1:-1272543 None:intergenic
TTGTGTTTATGAGACCGTAA+TGG 0.605518 2_1:-1277637 None:intergenic
ACAGAATGAATGTCTGGACC+AGG 0.605888 2_1:-1272812 None:intergenic
CTGAAGTTGGTAGAAGTGGA+AGG 0.607607 2_1:+1276982 Msa0186560:CDS
AGTGAAATACCTGATTGAGC+GGG 0.607815 2_1:-1277241 None:intergenic
AGTAGCGCGTTGCACCACTC+AGG 0.609268 2_1:+1278309 Msa0186560:CDS
ATATAAGTGAAGTTCCTCCC+TGG 0.613485 2_1:-1274295 None:intergenic
CCGTAATGGTAGGATCCTTG+TGG 0.613529 2_1:-1277623 None:intergenic
AAGTGAAATACCTGATTGAG+CGG 0.617943 2_1:-1277242 None:intergenic
GTCTGAAAGACCTCAGCTCG+AGG 0.618688 2_1:+1278986 Msa0186560:three_prime_UTR
ACGTTGGAATGTGGAACTTG+AGG 0.618713 2_1:+1278655 Msa0186560:CDS
ATAGCGAAGCACCGCAGTGG+TGG 0.618940 2_1:-1277142 None:intergenic
ACAATGTAGTAGTCCTGAGA+AGG 0.622508 2_1:-1277087 None:intergenic
GTTTATGAGACCGTAATGGT+AGG 0.623341 2_1:-1277633 None:intergenic
TATTATAAAGTATGGTGACA+AGG 0.623446 2_1:+1279080 Msa0186560:three_prime_UTR
TTGGTACAAGTCCAACCATA+CGG 0.625373 2_1:+1274477 Msa0186560:CDS
TAAGATTCTAGATAATACAA+AGG 0.625730 2_1:-1279050 None:intergenic
TCCTCACTTGATGTTCATGT+GGG 0.629604 2_1:+1277030 Msa0186560:CDS
TAAGTGAAGTTCCTCCCTGG+TGG 0.629747 2_1:-1274292 None:intergenic
AAGAATGTGACCTCGAGCTG+AGG 0.629756 2_1:-1278996 None:intergenic
CTTGGATTGTAGGTCCACCA+GGG 0.631318 2_1:-1277197 None:intergenic
AAGTGAAGTTCCTCCCTGGT+GGG 0.631783 2_1:-1274291 None:intergenic
AAAGAGAGGGAAAATTGAAG+GGG 0.633156 2_1:-1272272 None:intergenic
CTTGCATCACAGATGTGTCA+AGG 0.635259 2_1:-1277838 None:intergenic
GGTATATCCCTATTCATGGA+CGG 0.635653 2_1:+1278611 Msa0186560:intron
CCAAAGAATGCACGTCTCTG+TGG 0.641933 2_1:+1278768 Msa0186560:CDS
ACCTTACAGCAAGTGGACCA+AGG 0.643171 2_1:+1277594 Msa0186560:CDS
CAGAAATGATTAGGGAGGTG+CGG 0.649286 2_1:-1272359 None:intergenic
GAGGCATTAGGATACTCAGT+AGG 0.651245 2_1:+1274395 Msa0186560:CDS
AACATCAAGTGAGGAGTACG+TGG 0.656057 2_1:-1277022 None:intergenic
AGGTAAAGGCCACCACCAGT+GGG 0.656498 2_1:-1277818 None:intergenic
GGACCAAGGCCTAACCCACA+AGG 0.659246 2_1:+1277608 Msa0186560:CDS
CCCTTTGACGAACTCCAAGT+GGG 0.661178 2_1:-1272640 None:intergenic
TCAATGTGTAGTATGGATGG+AGG 0.663408 2_1:+1278241 Msa0186560:intron
GCATTTCAGAAAGCAGCTGG+CGG 0.666254 2_1:+1274367 Msa0186560:CDS
TTCTCAGGACTACTACATTG+TGG 0.670612 2_1:+1277089 Msa0186560:CDS
CAACATGCCCCATCCCACCA+GGG 0.673364 2_1:+1274278 Msa0186560:CDS
TAGACTTAGGATATCAAACG+TGG 0.675596 2_1:+1276918 Msa0186560:CDS
TCCCACATGAACATCAAGTG+AGG 0.677217 2_1:-1277031 None:intergenic
AAAACTCTTGCCTCTCTACG+CGG 0.677360 2_1:-1272468 None:intergenic
TAATATGATTCTCACCTGAG+TGG 0.682067 2_1:-1278323 None:intergenic
TTGGATTGTAGGTCCACCAG+GGG 0.683406 2_1:-1277196 None:intergenic
AAACCTTTGCTAGCTCAAAG+GGG 0.688074 2_1:-1278816 None:intergenic
GCTATAGCGAAGCACCGCAG+TGG 0.699087 2_1:-1277145 None:intergenic
AGACTTAGGATATCAAACGT+GGG 0.700576 2_1:+1276919 Msa0186560:CDS
AGGTCTTTCAGACTCAAACG+TGG 0.710556 2_1:-1278976 None:intergenic
GGGGTCAGAAATGATTAGGG+AGG 0.714872 2_1:-1272364 None:intergenic
ATATCTGAGAGACCCACTGG+TGG 0.716405 2_1:+1277806 Msa0186560:CDS
TCTTTCAGACTCAAACGTGG+TGG 0.724306 2_1:-1278973 None:intergenic
CATGCCCCATCCCACCAGGG+AGG 0.735313 2_1:+1274281 Msa0186560:CDS
GTAGTATGGATGGAGGACAG+TGG 0.742907 2_1:+1278248 Msa0186560:intron
TGGATTGTAGGTCCACCAGG+GGG 0.761885 2_1:-1277195 None:intergenic
TAAGATTCTCACCACCACTG+CGG 0.773633 2_1:+1277131 Msa0186560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAATAAAAAAAAA+TGG - chr2_1:1272764-1272783 None:intergenic 0.0%
!!! CTTATAAATCAATTTTAAAA+TGG - chr2_1:1272955-1272974 None:intergenic 10.0%
!! AAATTAAAACATTTAAAAAG+TGG - chr2_1:1273648-1273667 None:intergenic 10.0%
!!! TTAAAATGAATTTTTTTACA+AGG + chr2_1:1275125-1275144 Msa0186560:intron 10.0%
!!! CAGTTTTTTTTTTTTATATA+AGG - chr2_1:1276271-1276290 None:intergenic 10.0%
!!! TTATTTAAAAAAACTTTTCT+TGG + chr2_1:1276303-1276322 Msa0186560:intron 10.0%
!! AAATGTTAAAATAAAAGAGA+GGG - chr2_1:1272288-1272307 None:intergenic 15.0%
!! AAAATGTTAAAATAAAAGAG+AGG - chr2_1:1272289-1272308 None:intergenic 15.0%
!! GAAATTGAAACATAAAATAT+AGG - chr2_1:1272729-1272748 None:intergenic 15.0%
!! TTTATCTATCAAAATGAAAA+AGG + chr2_1:1273082-1273101 Msa0186560:intron 15.0%
!! TGTATATTAGTAGAAAAATA+CGG - chr2_1:1273810-1273829 None:intergenic 15.0%
!! ATATTACATATTATATGCAT+CGG - chr2_1:1274816-1274835 None:intergenic 15.0%
!! AATTTAAAAAGTTAAACTCA+CGG + chr2_1:1274888-1274907 Msa0186560:intron 15.0%
!! CATAAATATTATATGTTGTA+AGG - chr2_1:1277500-1277519 None:intergenic 15.0%
!!! TTAAACAATCCTTATTTATT+TGG + chr2_1:1278046-1278065 Msa0186560:intron 15.0%
!!! ATGATTTTCAATTTTCTTAA+AGG + chr2_1:1278590-1278609 Msa0186560:intron 15.0%
!!! ACATATATAGTATTCTTTTT+CGG - chr2_1:1279028-1279047 None:intergenic 15.0%
!! GATAATCTAATTCATATCTT+TGG + chr2_1:1273334-1273353 Msa0186560:intron 20.0%
!!! AAAATTGCACATTTTCAAAT+GGG - chr2_1:1273770-1273789 None:intergenic 20.0%
!! TTAAATCCACATTTCTTAAA+CGG - chr2_1:1274192-1274211 None:intergenic 20.0%
!! ATGAAATAGCTATAAAAAGA+AGG - chr2_1:1274525-1274544 None:intergenic 20.0%
!! TATTCATTCACTAAACAATA+TGG + chr2_1:1274552-1274571 Msa0186560:intron 20.0%
!! ATTTAAAAAGTTAAACTCAC+GGG + chr2_1:1274889-1274908 Msa0186560:intron 20.0%
!! CTTAAATTCGTATAAAGAAA+TGG - chr2_1:1274924-1274943 None:intergenic 20.0%
!! CTTTATACGAATTTAAGAAA+TGG + chr2_1:1274927-1274946 Msa0186560:intron 20.0%
!! TTAAAAATGAAAGAAAGATG+TGG - chr2_1:1275109-1275128 None:intergenic 20.0%
!! TTAAGTATCTTAAAACTTGT+AGG - chr2_1:1275756-1275775 None:intergenic 20.0%
!! CTATTGTAAAACAAAAAAAC+CGG + chr2_1:1275893-1275912 Msa0186560:intron 20.0%
!! TATTGTAAAACAAAAAAACC+GGG + chr2_1:1275894-1275913 Msa0186560:intron 20.0%
!!! GCAAGAAGTTTTTTTTTTTT+TGG - chr2_1:1276197-1276216 None:intergenic 20.0%
!! TCAAATTTGTGTATTTAAAC+CGG + chr2_1:1276587-1276606 Msa0186560:intron 20.0%
!!! TTAGAATGTATTTTTTCATC+CGG - chr2_1:1276609-1276628 None:intergenic 20.0%
!! AGGAATTTATTAACATTATG+TGG + chr2_1:1276675-1276694 Msa0186560:intron 20.0%
!! TAGTCATTTATTTAAAGAGT+AGG - chr2_1:1277475-1277494 None:intergenic 20.0%
!! TTACAAATGCCAAATAAATA+AGG - chr2_1:1278058-1278077 None:intergenic 20.0%
!! AATTATTTCAATGTGTAGTA+TGG + chr2_1:1278234-1278253 Msa0186560:intron 20.0%
!! AGTTAGAAACAACAAAAATT+GGG - chr2_1:1278560-1278579 None:intergenic 20.0%
!! AAGATTCTAGATAATACAAA+GGG - chr2_1:1279052-1279071 None:intergenic 20.0%
!! TAAGATTCTAGATAATACAA+AGG - chr2_1:1279053-1279072 None:intergenic 20.0%
!! ACCAGTATTATTATAAAGTA+TGG + chr2_1:1279072-1279091 Msa0186560:three_prime_UTR 20.0%
!! ACCATACTTTATAATAATAC+TGG - chr2_1:1279076-1279095 None:intergenic 20.0%
!! TTCATTTGATGTATTGAATA+TGG + chr2_1:1279143-1279162 Msa0186560:three_prime_UTR 20.0%
! ATCCTTATAAATTCTTCAAC+TGG + chr2_1:1272594-1272613 Msa0186560:CDS 25.0%
! TTCCAGTTGAAGAATTTATA+AGG - chr2_1:1272599-1272618 None:intergenic 25.0%
! ACACTAATCACATGATTATT+TGG - chr2_1:1273017-1273036 None:intergenic 25.0%
! CATATAACAAACATTCAAAG+TGG - chr2_1:1273115-1273134 None:intergenic 25.0%
! TTATGGTACTTAATGGAATT+AGG + chr2_1:1273288-1273307 Msa0186560:intron 25.0%
! TAGGTATTAATGTTACTAGT+TGG + chr2_1:1273307-1273326 Msa0186560:intron 25.0%
! AGGTATTAATGTTACTAGTT+GGG + chr2_1:1273308-1273327 Msa0186560:intron 25.0%
! TTTACTCTCTTCAATTCAAT+CGG - chr2_1:1273429-1273448 None:intergenic 25.0%
! AGTAAAAGGTTAATTGATGA+TGG - chr2_1:1273545-1273564 None:intergenic 25.0%
!! TAACCTTTTACTATTTTCGT+TGG + chr2_1:1273553-1273572 Msa0186560:intron 25.0%
!! CAAAATTGCACATTTTCAAA+TGG - chr2_1:1273771-1273790 None:intergenic 25.0%
! TAAACAGTTATGATAAGTGA+GGG + chr2_1:1274004-1274023 Msa0186560:intron 25.0%
! ACTGTATTACATGAATTTAG+TGG + chr2_1:1274104-1274123 Msa0186560:intron 25.0%
! ATTAATTGTATCATACCGTA+TGG - chr2_1:1274495-1274514 None:intergenic 25.0%
! ACATTTAAATGTGAAGAAGT+GGG + chr2_1:1274772-1274791 Msa0186560:intron 25.0%
! TATCAGTTGAGTTAAACTTA+TGG + chr2_1:1274839-1274858 Msa0186560:intron 25.0%
!! CTTATGTTTGAAACAATCTA+CGG - chr2_1:1274989-1275008 None:intergenic 25.0%
! GATTGTTTCAAACATAAGTA+AGG + chr2_1:1274991-1275010 Msa0186560:intron 25.0%
! TTTCAAACATAAGTAAGGAA+TGG + chr2_1:1274996-1275015 Msa0186560:intron 25.0%
! ACCATTAGTAAGAATATTTG+GGG - chr2_1:1275307-1275326 None:intergenic 25.0%
! GACCATTAGTAAGAATATTT+GGG - chr2_1:1275308-1275327 None:intergenic 25.0%
! TGACCATTAGTAAGAATATT+TGG - chr2_1:1275309-1275328 None:intergenic 25.0%
! ACTAATGGTCAAAATTTGAT+TGG + chr2_1:1275318-1275337 Msa0186560:intron 25.0%
! AATTAAATACGTAGTCAGAT+CGG - chr2_1:1275439-1275458 None:intergenic 25.0%
! AATACTAGTACTAGTATAGT+TGG - chr2_1:1275611-1275630 None:intergenic 25.0%
!! AGGAATTTACAAAAGTTGAT+AGG - chr2_1:1276219-1276238 None:intergenic 25.0%
!! TATCATTTTGTTCGATATAG+AGG - chr2_1:1276441-1276460 None:intergenic 25.0%
!! ATCAATTACTTGAACTTTTG+TGG + chr2_1:1276478-1276497 Msa0186560:intron 25.0%
!!! GTTTTGAATTCGAAAGTTAA+GGG - chr2_1:1276956-1276975 None:intergenic 25.0%
! GTTTCTATATTTAACCTTTC+CGG + chr2_1:1278510-1278529 Msa0186560:intron 25.0%
! GTTAGAAACAACAAAAATTG+GGG - chr2_1:1278559-1278578 None:intergenic 25.0%
! CAGTTAGAAACAACAAAAAT+TGG - chr2_1:1278561-1278580 None:intergenic 25.0%
! AAACGCGTAAATAAAATTGT+TGG - chr2_1:1278710-1278729 None:intergenic 25.0%
! TATTATAAAGTATGGTGACA+AGG + chr2_1:1279080-1279099 Msa0186560:three_prime_UTR 25.0%
AAAATTGAAGGGGATTCATT+TGG - chr2_1:1272265-1272284 None:intergenic 30.0%
AAAAGAGAGGGAAAATTGAA+GGG - chr2_1:1272276-1272295 None:intergenic 30.0%
TAAAAGAGAGGGAAAATTGA+AGG - chr2_1:1272277-1272296 None:intergenic 30.0%
!! AAGAGACTTTTAAAAGAGGT+GGG - chr2_1:1272393-1272412 None:intergenic 30.0%
!! AGAGAAGAGACTTTTAAAAG+AGG - chr2_1:1272397-1272416 None:intergenic 30.0%
!!! AGTTTTGTTAGTTAAGTGTG+TGG + chr2_1:1272485-1272504 Msa0186560:five_prime_UTR 30.0%
!! GTTTTGTTAGTTAAGTGTGT+GGG + chr2_1:1272486-1272505 Msa0186560:five_prime_UTR 30.0%
! TTCAACTGGAATGTTACTTA+CGG + chr2_1:1272608-1272627 Msa0186560:CDS 30.0%
TTACAGGGTATATTGATCAA+TGG + chr2_1:1272782-1272801 Msa0186560:intron 30.0%
TACAGGGTATATTGATCAAT+GGG + chr2_1:1272783-1272802 Msa0186560:intron 30.0%
TTTGTAACAGAATGAATGTC+TGG - chr2_1:1272821-1272840 None:intergenic 30.0%
!! TGTTGAAGACATTGATAATG+AGG - chr2_1:1272850-1272869 None:intergenic 30.0%
!! ATTAGTGTTGACACACTTAA+GGG + chr2_1:1273029-1273048 Msa0186560:intron 30.0%
ATATGACTCTAGCTAAATAG+TGG + chr2_1:1273130-1273149 Msa0186560:intron 30.0%
CACATGATTATGGTACTTAA+TGG + chr2_1:1273281-1273300 Msa0186560:intron 30.0%
TATTAATGTTACTAGTTGGG+AGG + chr2_1:1273311-1273330 Msa0186560:intron 30.0%
ATTAATGTTACTAGTTGGGA+GGG + chr2_1:1273312-1273331 Msa0186560:intron 30.0%
TAACAAGAAAGCAACCATTA+TGG + chr2_1:1273359-1273378 Msa0186560:intron 30.0%
AACACTTACGCTTTACATTA+TGG + chr2_1:1273507-1273526 Msa0186560:intron 30.0%
!! ATTGATGATGGATTATGGAT+GGG - chr2_1:1273533-1273552 None:intergenic 30.0%
!! AATTGATGATGGATTATGGA+TGG - chr2_1:1273534-1273553 None:intergenic 30.0%
!! GGTTAATTGATGATGGATTA+TGG - chr2_1:1273538-1273557 None:intergenic 30.0%
AAATACGGTCAAAGTAAGTT+AGG - chr2_1:1273795-1273814 None:intergenic 30.0%
TCAACTGTGTCAAGTATTAT+AGG + chr2_1:1273968-1273987 Msa0186560:intron 30.0%
GTAAACAGTTATGATAAGTG+AGG + chr2_1:1274003-1274022 Msa0186560:intron 30.0%
ATTTAATTGAATGAAACCGC+AGG + chr2_1:1274206-1274225 Msa0186560:intron 30.0%
CACTTATATACTTCAAGTGA+AGG + chr2_1:1274309-1274328 Msa0186560:CDS 30.0%
CACATTTAAATGTGAAGAAG+TGG + chr2_1:1274771-1274790 Msa0186560:intron 30.0%
AAATGAAAGAAAGATGTGGT+GGG - chr2_1:1275105-1275124 None:intergenic 30.0%
AAAATGAAAGAAAGATGTGG+TGG - chr2_1:1275106-1275125 None:intergenic 30.0%
!! GAAAAAAGAGTACTAGAAAC+TGG + chr2_1:1275245-1275264 Msa0186560:intron 30.0%
CCATTAGTAAGAATATTTGG+GGG - chr2_1:1275306-1275325 None:intergenic 30.0%
AATGGTCAAAATTTGATTGG+CGG + chr2_1:1275321-1275340 Msa0186560:intron 30.0%
GAACTTTCAATGTAATACAG+CGG + chr2_1:1275513-1275532 Msa0186560:intron 30.0%
AACTTTCAATGTAATACAGC+GGG + chr2_1:1275514-1275533 Msa0186560:intron 30.0%
! AGTATTGAATCTGTAACGTT+TGG + chr2_1:1275625-1275644 Msa0186560:intron 30.0%
TTTAAACGAGACAGTTTCTA+TGG + chr2_1:1276065-1276084 Msa0186560:intron 30.0%
ACGTTGAATGATAATCCATT+AGG - chr2_1:1276784-1276803 None:intergenic 30.0%
TTATCATTCAACGTTGAACA+AGG + chr2_1:1276790-1276809 Msa0186560:CDS 30.0%
!!! GGTTTTGAATTCGAAAGTTA+AGG - chr2_1:1276957-1276976 None:intergenic 30.0%
TAAAGAGTAGGAATCGAATT+CGG - chr2_1:1277463-1277482 None:intergenic 30.0%
AAGCTATGATCCATAATTTC+AGG + chr2_1:1277567-1277586 Msa0186560:intron 30.0%
! TAAGGTTAGTCCTGAAATTA+TGG - chr2_1:1277580-1277599 None:intergenic 30.0%
CTAATGAGCATTAAAGTGAA+AGG - chr2_1:1277992-1278011 None:intergenic 30.0%
TTCAATTGATATTGTGTCTC+TGG + chr2_1:1278181-1278200 Msa0186560:intron 30.0%
ATTTCAATGTGTAGTATGGA+TGG + chr2_1:1278238-1278257 Msa0186560:intron 30.0%
TAAACACTGCTACTATGTAT+AGG - chr2_1:1278459-1278478 None:intergenic 30.0%
ACATAGTAGCAGTGTTTAAT+CGG + chr2_1:1278461-1278480 Msa0186560:intron 30.0%
! TAAAGGTATATCCCTATTCA+TGG + chr2_1:1278607-1278626 Msa0186560:intron 30.0%
!!! TATAGTATTCTTTTTCGGCT+GGG - chr2_1:1279023-1279042 None:intergenic 30.0%
!!! ATATAGTATTCTTTTTCGGC+TGG - chr2_1:1279024-1279043 None:intergenic 30.0%
AAAGAGAGGGAAAATTGAAG+GGG - chr2_1:1272275-1272294 None:intergenic 35.0%
!! AGAGACTTTTAAAAGAGGTG+GGG - chr2_1:1272392-1272411 None:intergenic 35.0%
!! GAAGAGACTTTTAAAAGAGG+TGG - chr2_1:1272394-1272413 None:intergenic 35.0%
TTGTACCATGAGATGAGAAA+GGG - chr2_1:1272884-1272903 None:intergenic 35.0%
!! GATTAGTGTTGACACACTTA+AGG + chr2_1:1273028-1273047 Msa0186560:intron 35.0%
ATGTTTGTTTGATGCTGATG+TGG + chr2_1:1273053-1273072 Msa0186560:intron 35.0%
AAAAACAAGTGAACCAGATC+TGG - chr2_1:1273210-1273229 None:intergenic 35.0%
!! GTGCTTTTGCTCTTTTAGAA+AGG - chr2_1:1273264-1273283 None:intergenic 35.0%
! AGAGCAAAAGCACATGATTA+TGG + chr2_1:1273271-1273290 Msa0186560:intron 35.0%
CAACCATTATGGCATATTGT+CGG + chr2_1:1273370-1273389 Msa0186560:intron 35.0%
ATTCCGACAATATGCCATAA+TGG - chr2_1:1273376-1273395 None:intergenic 35.0%
TTCAATTCAATCGGTACCTT+AGG - chr2_1:1273420-1273439 None:intergenic 35.0%
GTTGGTCGTTATGTAATGTA+AGG + chr2_1:1273471-1273490 Msa0186560:intron 35.0%
CAGCCAACGAAAATAGTAAA+AGG - chr2_1:1273559-1273578 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG - chr2_1:1273757-1273776 None:intergenic 35.0%
! ATGCATTGACATGCGTAATA+AGG + chr2_1:1273945-1273964 Msa0186560:intron 35.0%
CTGTGTCAAGTATTATAGGA+AGG + chr2_1:1273972-1273991 Msa0186560:intron 35.0%
TGTCAAGTATTATAGGAAGG+AGG + chr2_1:1273975-1273994 Msa0186560:intron 35.0%
GTCAAGTATTATAGGAAGGA+GGG + chr2_1:1273976-1273995 Msa0186560:intron 35.0%
CATATCTACAATTGCCCTTT+GGG - chr2_1:1274149-1274168 None:intergenic 35.0%
ACTGAACCGTTTAAGAAATG+TGG + chr2_1:1274183-1274202 Msa0186560:intron 35.0%
CTTCAAGTGAAGGATCAAAT+TGG + chr2_1:1274319-1274338 Msa0186560:CDS 35.0%
ACTTGTACCAATCACCAATA+AGG - chr2_1:1274468-1274487 None:intergenic 35.0%
ATTGTATCATACCGTATGGT+TGG - chr2_1:1274491-1274510 None:intergenic 35.0%
! AAGAACTACTCGACTTTTTG+TGG + chr2_1:1275049-1275068 Msa0186560:intron 35.0%
ATGAACTACGCGTTCAATAT+TGG + chr2_1:1275159-1275178 Msa0186560:intron 35.0%
CCCCCAAATATTCTTACTAA+TGG + chr2_1:1275303-1275322 Msa0186560:intron 35.0%
ACTTTCAATGTAATACAGCG+GGG + chr2_1:1275515-1275534 Msa0186560:intron 35.0%
!! AACTTTAAAACACATGCACC+CGG - chr2_1:1275915-1275934 None:intergenic 35.0%
AGACAGTTTCTATGGTTATC+CGG + chr2_1:1276073-1276092 Msa0186560:intron 35.0%
AAGCATCACATGAAAACTCA+CGG - chr2_1:1276112-1276131 None:intergenic 35.0%
TCCTTACAGATTACAGAACT+GGG - chr2_1:1276659-1276678 None:intergenic 35.0%
TTCCTTACAGATTACAGAAC+TGG - chr2_1:1276660-1276679 None:intergenic 35.0%
ATTGAAAGCCCATCTTGATA+AGG + chr2_1:1276711-1276730 Msa0186560:CDS 35.0%
TTGAAAGCCCATCTTGATAA+GGG + chr2_1:1276712-1276731 Msa0186560:CDS 35.0%
CTTCTTTCCCTTATCAAGAT+GGG - chr2_1:1276722-1276741 None:intergenic 35.0%
TATCACCATTTGTACACAAC+AGG + chr2_1:1276886-1276905 Msa0186560:intron 35.0%
TCTTTCCTGTTGTGTACAAA+TGG - chr2_1:1276894-1276913 None:intergenic 35.0%
CAGGAAAGACTTATAGACTT+AGG + chr2_1:1276905-1276924 Msa0186560:intron 35.0%
TAGACTTAGGATATCAAACG+TGG + chr2_1:1276918-1276937 Msa0186560:CDS 35.0%
AGACTTAGGATATCAAACGT+GGG + chr2_1:1276919-1276938 Msa0186560:CDS 35.0%
TCAAAACCACAAACTGAAGT+TGG + chr2_1:1276969-1276988 Msa0186560:CDS 35.0%
AATCTTAGAGGAGAATCTTG+TGG - chr2_1:1277118-1277137 None:intergenic 35.0%
AAGTGAAATACCTGATTGAG+CGG - chr2_1:1277245-1277264 None:intergenic 35.0%
TTGTGTTTATGAGACCGTAA+TGG - chr2_1:1277640-1277659 None:intergenic 35.0%
CACAACAAAGACAATCATTC+TGG + chr2_1:1277655-1277674 Msa0186560:CDS 35.0%
GTTAATGGCAAGCAAAGATA+TGG + chr2_1:1277695-1277714 Msa0186560:CDS 35.0%
GCTGATTACTTCAAAATCTC+CGG + chr2_1:1277764-1277783 Msa0186560:CDS 35.0%
! GAACAATGTTCTCGTTGTTT+TGG - chr2_1:1277895-1277914 None:intergenic 35.0%
!! GCTACTCTTTCTTTGTTGTT+GGG + chr2_1:1277933-1277952 Msa0186560:CDS 35.0%
GAGACACAATATCAGTAACA+TGG - chr2_1:1278124-1278143 None:intergenic 35.0%
TGTTACTGATATTGTGTCTC+TGG + chr2_1:1278124-1278143 Msa0186560:intron 35.0%
TAATATGATTCTCACCTGAG+TGG - chr2_1:1278326-1278345 None:intergenic 35.0%
GTAACTAACCAACTAGTAAC+TGG - chr2_1:1278393-1278412 None:intergenic 35.0%
TCACATAACAGAAAGAAAGC+CGG - chr2_1:1278532-1278551 None:intergenic 35.0%
TAAATAGCCGTCCATGAATA+GGG - chr2_1:1278621-1278640 None:intergenic 35.0%
ATAAATAGCCGTCCATGAAT+AGG - chr2_1:1278622-1278641 None:intergenic 35.0%
TAAACCTTTGCTAGCTCAAA+GGG - chr2_1:1278820-1278839 None:intergenic 35.0%
TTAAACCTTTGCTAGCTCAA+AGG - chr2_1:1278821-1278840 None:intergenic 35.0%
AGAAAAACTTGGTACCAAAC+AGG - chr2_1:1279263-1279282 None:intergenic 35.0%
TTGAAGGGGATTCATTTGGA+AGG - chr2_1:1272261-1272280 None:intergenic 40.0%
!! GAGACTTTTAAAAGAGGTGG+GGG - chr2_1:1272391-1272410 None:intergenic 40.0%
ACTCTCAATTTAGCTGCTGT+TGG + chr2_1:1272518-1272537 Msa0186560:CDS 40.0%
AGTAGCAACACATAGAAGCA+AGG - chr2_1:1272546-1272565 None:intergenic 40.0%
TTGATCAATGGGCAATTTCC+TGG + chr2_1:1272794-1272813 Msa0186560:CDS 40.0%
ATGAACCCTTTCTCATCTCA+TGG + chr2_1:1272876-1272895 Msa0186560:CDS 40.0%
CTTGTACCATGAGATGAGAA+AGG - chr2_1:1272885-1272904 None:intergenic 40.0%
TGTTTGATGCTGATGTGGAT+TGG + chr2_1:1273058-1273077 Msa0186560:intron 40.0%
ACACATTTGATCCAGCACAT+GGG - chr2_1:1273170-1273189 None:intergenic 40.0%
AAATGTGTGGACACTAGACA+CGG + chr2_1:1273182-1273201 Msa0186560:intron 40.0%
GGCATATTGTCGGAATTATG+TGG + chr2_1:1273380-1273399 Msa0186560:intron 40.0%
GGTAGAAGAAACTACTCCTA+AGG + chr2_1:1273401-1273420 Msa0186560:intron 40.0%
CCAACTACAACAACTACTTC+TGG - chr2_1:1273456-1273475 None:intergenic 40.0%
CCAGAAGTAGTTGTTGTAGT+TGG + chr2_1:1273453-1273472 Msa0186560:intron 40.0%
GAGTAGGTGGTAAGCTATAA+TGG - chr2_1:1273597-1273616 None:intergenic 40.0%
! TGATTTTGGACAAACCGAGA+TGG - chr2_1:1273619-1273638 None:intergenic 40.0%
! AAAAGTGGCGCATGTGATTT+TGG - chr2_1:1273633-1273652 None:intergenic 40.0%
TCAAATGGGTCATCTATTGC+GGG - chr2_1:1273756-1273775 None:intergenic 40.0%
!!! TTTTTTGTTCCTGAGCCCAA+AGG + chr2_1:1274131-1274150 Msa0186560:intron 40.0%
! TTTTTGTTCCTGAGCCCAAA+GGG + chr2_1:1274132-1274151 Msa0186560:intron 40.0%
CCATATCTACAATTGCCCTT+TGG - chr2_1:1274150-1274169 None:intergenic 40.0%
CCAAAGGGCAATTGTAGATA+TGG + chr2_1:1274147-1274166 Msa0186560:intron 40.0%
ATTGAATGAAACCGCAGGAA+TGG + chr2_1:1274211-1274230 Msa0186560:intron 40.0%
TTGAATGAAACCGCAGGAAT+GGG + chr2_1:1274212-1274231 Msa0186560:intron 40.0%
AGAAGGAACTCATTCGAAGA+TGG + chr2_1:1274244-1274263 Msa0186560:CDS 40.0%
CTCATTCGAAGATGGTGTTT+CGG + chr2_1:1274252-1274271 Msa0186560:CDS 40.0%
TCATTCGAAGATGGTGTTTC+GGG + chr2_1:1274253-1274272 Msa0186560:CDS 40.0%
ATATAAGTGAAGTTCCTCCC+TGG - chr2_1:1274298-1274317 None:intergenic 40.0%
!! GCTTTCTGAAATGCTAGAGA+TGG - chr2_1:1274361-1274380 None:intergenic 40.0%
GGAGATTACACTGTCCTTAT+TGG + chr2_1:1274451-1274470 Msa0186560:CDS 40.0%
! ACACTGTCCTTATTGGTGAT+TGG + chr2_1:1274458-1274477 Msa0186560:CDS 40.0%
TTGGTACAAGTCCAACCATA+CGG + chr2_1:1274477-1274496 Msa0186560:CDS 40.0%
!! AGTACTAGAAACTGGTTTGC+TGG + chr2_1:1275253-1275272 Msa0186560:intron 40.0%
TTTGCTGGCAAATTACGAAG+TGG + chr2_1:1275268-1275287 Msa0186560:intron 40.0%
!!! CATTTTGAGTTGTGTGCCAA+GGG + chr2_1:1275395-1275414 Msa0186560:intron 40.0%
GACAGTTTCTATGGTTATCC+GGG + chr2_1:1276074-1276093 Msa0186560:intron 40.0%
TCACGGACAAAATTTGAACC+CGG - chr2_1:1276095-1276114 None:intergenic 40.0%
TCCCAGTTCTGTAATCTGTA+AGG + chr2_1:1276655-1276674 Msa0186560:intron 40.0%
GCTTCTTTCCCTTATCAAGA+TGG - chr2_1:1276723-1276742 None:intergenic 40.0%
AAGAAGCTTCCTATACCTGA+TGG + chr2_1:1276736-1276755 Msa0186560:CDS 40.0%
ATTAGGACTCCATCAGGTAT+AGG - chr2_1:1276748-1276767 None:intergenic 40.0%
CTTCTACCAACTTCAGTTTG+TGG - chr2_1:1276978-1276997 None:intergenic 40.0%
!! CAAACTGAAGTTGGTAGAAG+TGG + chr2_1:1276978-1276997 Msa0186560:CDS 40.0%
TCCTCACTTGATGTTCATGT+GGG + chr2_1:1277030-1277049 Msa0186560:CDS 40.0%
ACAATGTAGTAGTCCTGAGA+AGG - chr2_1:1277090-1277109 None:intergenic 40.0%
TTCTCAGGACTACTACATTG+TGG + chr2_1:1277089-1277108 Msa0186560:CDS 40.0%
!! GACCTACAATCCAAGTTGAT+TGG + chr2_1:1277205-1277224 Msa0186560:CDS 40.0%
GACCAATCAACTTGGATTGT+AGG - chr2_1:1277210-1277229 None:intergenic 40.0%
GGTTCAAAGACCAATCAACT+TGG - chr2_1:1277218-1277237 None:intergenic 40.0%
AGTGAAATACCTGATTGAGC+GGG - chr2_1:1277244-1277263 None:intergenic 40.0%
GTTTATGAGACCGTAATGGT+AGG - chr2_1:1277636-1277655 None:intergenic 40.0%
AAGTAATCAGCGAGCTTAAG+AGG - chr2_1:1277755-1277774 None:intergenic 40.0%
TCACAGATGTGTCAAGGTAA+AGG - chr2_1:1277835-1277854 None:intergenic 40.0%
GTTCAGAGCTATCATCTTGA+TGG + chr2_1:1277911-1277930 Msa0186560:CDS 40.0%
! GGCTACTCTTTCTTTGTTGT+TGG + chr2_1:1277932-1277951 Msa0186560:CDS 40.0%
TCAATGTGTAGTATGGATGG+AGG + chr2_1:1278241-1278260 Msa0186560:intron 40.0%
TGGACAACTTCTAGCAGAAA+CGG + chr2_1:1278268-1278287 Msa0186560:CDS 40.0%
TATGTATAGGACAGCTAGGT+AGG - chr2_1:1278446-1278465 None:intergenic 40.0%
CTACTATGTATAGGACAGCT+AGG - chr2_1:1278450-1278469 None:intergenic 40.0%
TAACAGAAAGAAAGCCGGAA+AGG - chr2_1:1278527-1278546 None:intergenic 40.0%
GGTATATCCCTATTCATGGA+CGG + chr2_1:1278611-1278630 Msa0186560:intron 40.0%
TATGTTGCACTTGACAACGT+TGG + chr2_1:1278639-1278658 Msa0186560:CDS 40.0%
!! AGACGTGCATTCTTTGGAAT+AGG - chr2_1:1278765-1278784 None:intergenic 40.0%
AAACCTTTGCTAGCTCAAAG+GGG - chr2_1:1278819-1278838 None:intergenic 40.0%
! ACATATCCTTTTCACTTCCG+CGG + chr2_1:1279195-1279214 Msa0186560:three_prime_UTR 40.0%
TTGAAGCTTAAGAGCCTGTT+TGG + chr2_1:1279246-1279265 Msa0186560:three_prime_UTR 40.0%
CAGAAATGATTAGGGAGGTG+CGG - chr2_1:1272362-1272381 None:intergenic 45.0%
GGAGGGGTCAGAAATGATTA+GGG - chr2_1:1272370-1272389 None:intergenic 45.0%
!! TTTTAAAAGAGGTGGGGGAG+GGG - chr2_1:1272386-1272405 None:intergenic 45.0%
!! CTTTTAAAAGAGGTGGGGGA+GGG - chr2_1:1272387-1272406 None:intergenic 45.0%
!! ACTTTTAAAAGAGGTGGGGG+AGG - chr2_1:1272388-1272407 None:intergenic 45.0%
AAAACTCTTGCCTCTCTACG+CGG - chr2_1:1272471-1272490 None:intergenic 45.0%
TACGGTGACATTTACCCACT+TGG + chr2_1:1272626-1272645 Msa0186560:CDS 45.0%
ACAGAATGAATGTCTGGACC+AGG - chr2_1:1272815-1272834 None:intergenic 45.0%
CACACATTTGATCCAGCACA+TGG - chr2_1:1273171-1273190 None:intergenic 45.0%
CATGTGCTGGATCAAATGTG+TGG + chr2_1:1273169-1273188 Msa0186560:intron 45.0%
CTAGCATTTCAGAAAGCAGC+TGG + chr2_1:1274364-1274383 Msa0186560:CDS 45.0%
! GAGGCATTAGGATACTCAGT+AGG + chr2_1:1274395-1274414 Msa0186560:CDS 45.0%
GGGAAAGGAACTGGAATTCT+AGG - chr2_1:1274421-1274440 None:intergenic 45.0%
! TGTAATCTCCAGCTGGTTCA+GGG - chr2_1:1274441-1274460 None:intergenic 45.0%
ATGTGAAGAAGTGGGATGTC+TGG + chr2_1:1274780-1274799 Msa0186560:intron 45.0%
TGTGAAGAAGTGGGATGTCT+GGG + chr2_1:1274781-1274800 Msa0186560:intron 45.0%
! AAGAAAGATGTGGTGGGAGT+GGG - chr2_1:1275099-1275118 None:intergenic 45.0%
! AAAGAAAGATGTGGTGGGAG+TGG - chr2_1:1275100-1275119 None:intergenic 45.0%
CCTTGGCACACAACTCAAAA+TGG - chr2_1:1275397-1275416 None:intergenic 45.0%
!!! CCATTTTGAGTTGTGTGCCA+AGG + chr2_1:1275394-1275413 Msa0186560:intron 45.0%
TCAGATCGGATAGAAGAGGA+GGG - chr2_1:1275425-1275444 None:intergenic 45.0%
GTAGTCAGATCGGATAGAAG+AGG - chr2_1:1275429-1275448 None:intergenic 45.0%
CTCTTAAGCAAGTTGCCAAG+CGG + chr2_1:1275461-1275480 Msa0186560:intron 45.0%
TCTAATGAGTGATCACCGCT+TGG - chr2_1:1275479-1275498 None:intergenic 45.0%
TATACTCCCTCAGTGTCCAT+GGG - chr2_1:1276365-1276384 None:intergenic 45.0%
TTATACTCCCTCAGTGTCCA+TGG - chr2_1:1276366-1276385 None:intergenic 45.0%
! CCATTGATTAGGACTCCATC+AGG - chr2_1:1276754-1276773 None:intergenic 45.0%
CCTGATGGAGTCCTAATCAA+TGG + chr2_1:1276751-1276770 Msa0186560:CDS 45.0%
! TAGGTCCACGACCATTGATT+AGG - chr2_1:1276765-1276784 None:intergenic 45.0%
ATCAATGGTCGTGGACCTAA+TGG + chr2_1:1276766-1276785 Msa0186560:CDS 45.0%
!! CTGAAGTTGGTAGAAGTGGA+AGG + chr2_1:1276982-1277001 Msa0186560:CDS 45.0%
! AACATCAAGTGAGGAGTACG+TGG - chr2_1:1277025-1277044 None:intergenic 45.0%
CTCCTCACTTGATGTTCATG+TGG + chr2_1:1277029-1277048 Msa0186560:CDS 45.0%
TCCCACATGAACATCAAGTG+AGG - chr2_1:1277034-1277053 None:intergenic 45.0%
AACTGCTGATCAACCTTCTC+AGG + chr2_1:1277074-1277093 Msa0186560:CDS 45.0%
! AGTGGTGGTGAGAATCTTAG+AGG - chr2_1:1277130-1277149 None:intergenic 45.0%
TAAGATTCTCACCACCACTG+CGG + chr2_1:1277131-1277150 Msa0186560:CDS 45.0%
GATCGACTACTCCTTAACCA+CGG + chr2_1:1277380-1277399 Msa0186560:intron 45.0%
ATCGACTACTCCTTAACCAC+GGG + chr2_1:1277381-1277400 Msa0186560:intron 45.0%
AGGACTAACCTTACAGCAAG+TGG + chr2_1:1277587-1277606 Msa0186560:intron 45.0%
CGTAATGGTAGGATCCTTGT+GGG - chr2_1:1277625-1277644 None:intergenic 45.0%
CCACAAGGATCCTACCATTA+CGG + chr2_1:1277623-1277642 Msa0186560:CDS 45.0%
CTTGCATCACAGATGTGTCA+AGG - chr2_1:1277841-1277860 None:intergenic 45.0%
GGACAACTTCTAGCAGAAAC+GGG + chr2_1:1278269-1278288 Msa0186560:CDS 45.0%
GCAAACGACCAGTTACTAGT+TGG + chr2_1:1278382-1278401 Msa0186560:intron 45.0%
CACTTGACAACGTTGGAATG+TGG + chr2_1:1278646-1278665 Msa0186560:CDS 45.0%
ACGTTGGAATGTGGAACTTG+AGG + chr2_1:1278655-1278674 Msa0186560:CDS 45.0%
! GAACTTGAGGACCGAGTTTT+GGG + chr2_1:1278668-1278687 Msa0186560:CDS 45.0%
ATACTGTCGTGCCCAAAACT+CGG - chr2_1:1278682-1278701 None:intergenic 45.0%
! TTTTGGGCACGACAGTATCT+TGG + chr2_1:1278684-1278703 Msa0186560:CDS 45.0%
AGGAAACTCGTCTCTGATTG+AGG - chr2_1:1278745-1278764 None:intergenic 45.0%
AACCTTTGCTAGCTCAAAGG+GGG - chr2_1:1278818-1278837 None:intergenic 45.0%
CATCCATTCCATGCTTGAGA+AGG + chr2_1:1278844-1278863 Msa0186560:three_prime_UTR 45.0%
ATGCCTTCTCAAGCATGGAA+TGG - chr2_1:1278850-1278869 None:intergenic 45.0%
CTAGAATGCCTTCTCAAGCA+TGG - chr2_1:1278855-1278874 None:intergenic 45.0%
TCTTTCAGACTCAAACGTGG+TGG - chr2_1:1278976-1278995 None:intergenic 45.0%
AGGTCTTTCAGACTCAAACG+TGG - chr2_1:1278979-1278998 None:intergenic 45.0%
GTGACAAGGATTGCAGAAGT+TGG + chr2_1:1279094-1279113 Msa0186560:three_prime_UTR 45.0%
GCTGTTACAAAAAGACACCG+CGG - chr2_1:1279215-1279234 None:intergenic 45.0%
!!! TTTTTTTATTTAATTTTTAC+AGG + chr2_1:1272766-1272785 Msa0186560:intron 5.0%
!!! TTTTTTATTTAATTTTTACA+GGG + chr2_1:1272767-1272786 Msa0186560:intron 5.0%
!! AAAAATTACAATAAAAAAAA+TGG + chr2_1:1274698-1274717 Msa0186560:intron 5.0%
!!! TAATTAATATTTTATTTTTC+TGG + chr2_1:1275691-1275710 Msa0186560:intron 5.0%
!! TAAATTAACTTATAAAAATA+TGG + chr2_1:1275773-1275792 Msa0186560:intron 5.0%
!! AAATTAACTTATAAAAATAT+GGG + chr2_1:1275774-1275793 Msa0186560:intron 5.0%
GGGGTCAGAAATGATTAGGG+AGG - chr2_1:1272367-1272386 None:intergenic 50.0%
GGGAGGGGTCAGAAATGATT+AGG - chr2_1:1272371-1272390 None:intergenic 50.0%
ACCCACTTGGAGTTCGTCAA+AGG + chr2_1:1272639-1272658 Msa0186560:CDS 50.0%
CCCTTTGACGAACTCCAAGT+GGG - chr2_1:1272643-1272662 None:intergenic 50.0%
CCCACTTGGAGTTCGTCAAA+GGG + chr2_1:1272640-1272659 Msa0186560:CDS 50.0%
ACCCTTTGACGAACTCCAAG+TGG - chr2_1:1272644-1272663 None:intergenic 50.0%
CACTAAAGTCTCCCATGTGC+TGG + chr2_1:1273156-1273175 Msa0186560:intron 50.0%
ACTAGACACGGATCCAGATC+TGG + chr2_1:1273194-1273213 Msa0186560:intron 50.0%
!! TTCGTTGGCTGTTAGCTTGC+TGG + chr2_1:1273568-1273587 Msa0186560:intron 50.0%
GCTTACCACCTACTCCATCT+CGG + chr2_1:1273602-1273621 Msa0186560:intron 50.0%
ACAAACCGAGATGGAGTAGG+TGG - chr2_1:1273610-1273629 None:intergenic 50.0%
TGGACAAACCGAGATGGAGT+AGG - chr2_1:1273613-1273632 None:intergenic 50.0%
ATGGGTCATCTATTGCGGGA+CGG - chr2_1:1273752-1273771 None:intergenic 50.0%
TACAATTGCCCTTTGGGCTC+AGG - chr2_1:1274143-1274162 None:intergenic 50.0%
CGAATGAGTTCCTTCTCTGC+TGG - chr2_1:1274240-1274259 None:intergenic 50.0%
AAGTGAAGTTCCTCCCTGGT+GGG - chr2_1:1274294-1274313 None:intergenic 50.0%
TAAGTGAAGTTCCTCCCTGG+TGG - chr2_1:1274295-1274314 None:intergenic 50.0%
GCATTTCAGAAAGCAGCTGG+CGG + chr2_1:1274367-1274386 Msa0186560:CDS 50.0%
! GTGTAATCTCCAGCTGGTTC+AGG - chr2_1:1274442-1274461 None:intergenic 50.0%
AGGACAGTGTAATCTCCAGC+TGG - chr2_1:1274448-1274467 None:intergenic 50.0%
! AGAAAGATGTGGTGGGAGTG+GGG - chr2_1:1275098-1275117 None:intergenic 50.0%
AGAAGAGGAGGGTTATCCCT+TGG - chr2_1:1275414-1275433 None:intergenic 50.0%
GTCAGATCGGATAGAAGAGG+AGG - chr2_1:1275426-1275445 None:intergenic 50.0%
! CGCTTGGCAACTTGCTTAAG+AGG - chr2_1:1275463-1275482 None:intergenic 50.0%
ATACTCCCTCAGTGTCCATG+GGG - chr2_1:1276364-1276383 None:intergenic 50.0%
GGAGTCCTAATCAATGGTCG+TGG + chr2_1:1276757-1276776 Msa0186560:CDS 50.0%
CTTCGCTATAGCAACTCTGC+AGG + chr2_1:1277156-1277175 Msa0186560:CDS 50.0%
TTGGATTGTAGGTCCACCAG+GGG - chr2_1:1277199-1277218 None:intergenic 50.0%
CTTGGATTGTAGGTCCACCA+GGG - chr2_1:1277200-1277219 None:intergenic 50.0%
ACTTGGATTGTAGGTCCACC+AGG - chr2_1:1277201-1277220 None:intergenic 50.0%
! AATACCTGATTGAGCGGGCT+TGG - chr2_1:1277239-1277258 None:intergenic 50.0%
TCGACTACTCCTTAACCACG+GGG + chr2_1:1277382-1277401 Msa0186560:intron 50.0%
ACCTTACAGCAAGTGGACCA+AGG + chr2_1:1277594-1277613 Msa0186560:CDS 50.0%
TGGTAGGATCCTTGTGGGTT+AGG - chr2_1:1277620-1277639 None:intergenic 50.0%
CCGTAATGGTAGGATCCTTG+TGG - chr2_1:1277626-1277645 None:intergenic 50.0%
! ATCATTCTGGCTAGCTCTCC+TGG + chr2_1:1277668-1277687 Msa0186560:CDS 50.0%
AGCTCTCCTGGTCAGGTTAA+TGG + chr2_1:1277680-1277699 Msa0186560:CDS 50.0%
TGCTTGCCATTAACCTGACC+AGG - chr2_1:1277689-1277708 None:intergenic 50.0%
! ATCTCCGGTGTTTTTCGCGT+TGG + chr2_1:1277779-1277798 Msa0186560:CDS 50.0%
GCTTCCAACGCGAAAAACAC+CGG - chr2_1:1277786-1277805 None:intergenic 50.0%
AGCATATCTGAGAGACCCAC+TGG + chr2_1:1277803-1277822 Msa0186560:CDS 50.0%
ATATCTGAGAGACCCACTGG+TGG + chr2_1:1277806-1277825 Msa0186560:CDS 50.0%
GTAGTATGGATGGAGGACAG+TGG + chr2_1:1278248-1278267 Msa0186560:intron 50.0%
! GGAACTTGAGGACCGAGTTT+TGG + chr2_1:1278667-1278686 Msa0186560:CDS 50.0%
CCACAGAGACGTGCATTCTT+TGG - chr2_1:1278771-1278790 None:intergenic 50.0%
CCAAAGAATGCACGTCTCTG+TGG + chr2_1:1278768-1278787 Msa0186560:CDS 50.0%
AGAATGCACGTCTCTGTGGT+AGG + chr2_1:1278772-1278791 Msa0186560:CDS 50.0%
GAATGCACGTCTCTGTGGTA+GGG + chr2_1:1278773-1278792 Msa0186560:CDS 50.0%
GTGGTCGTTCTTGATACGAC+AGG - chr2_1:1278957-1278976 None:intergenic 50.0%
AAGAATGTGACCTCGAGCTG+AGG - chr2_1:1278999-1279018 None:intergenic 50.0%
AAGACACCGCGGAAGTGAAA+AGG - chr2_1:1279204-1279223 None:intergenic 50.0%
TGCGGTGCAAGAAGGGACTA+AGG - chr2_1:1272344-1272363 None:intergenic 55.0%
! GTAAGCATTGCCGCGTAGAG+AGG + chr2_1:1272458-1272477 Msa0186560:five_prime_UTR 55.0%
GTCATCTATTGCGGGACGGA+GGG - chr2_1:1273748-1273767 None:intergenic 55.0%
TCTGCTGGATCCCATTCCTG+CGG - chr2_1:1274225-1274244 None:intergenic 55.0%
GGAATGGGATCCAGCAGAGA+AGG + chr2_1:1274227-1274246 Msa0186560:intron 55.0%
AAGTTCCTCCCTGGTGGGAT+GGG - chr2_1:1274289-1274308 None:intergenic 55.0%
! CAGAAAGCAGCTGGCGGTTT+TGG + chr2_1:1274373-1274392 Msa0186560:CDS 55.0%
!! AAAGCAGCTGGCGGTTTTGG+AGG + chr2_1:1274376-1274395 Msa0186560:CDS 55.0%
!!! CTGGCGGTTTTGGAGGCATT+AGG + chr2_1:1274383-1274402 Msa0186560:CDS 55.0%
! GCTGGTTCAGGGAAAGGAAC+TGG - chr2_1:1274430-1274449 None:intergenic 55.0%
GTTCCTTTCCCTGAACCAGC+TGG + chr2_1:1274430-1274449 Msa0186560:CDS 55.0%
! TCTCCAGCTGGTTCAGGGAA+AGG - chr2_1:1274436-1274455 None:intergenic 55.0%
AACTCTGCAGGCGCAGTATC+AGG + chr2_1:1277168-1277187 Msa0186560:CDS 55.0%
TGGATTGTAGGTCCACCAGG+GGG - chr2_1:1277198-1277217 None:intergenic 55.0%
TGAACCAAGCCCGCTCAATC+AGG + chr2_1:1277232-1277251 Msa0186560:CDS 55.0%
CGACTACTCCTTAACCACGG+GGG + chr2_1:1277383-1277402 Msa0186560:intron 55.0%
!! GCCTTGGTCCACTTGCTGTA+AGG - chr2_1:1277598-1277617 None:intergenic 55.0%
!! GATCCTTGTGGGTTAGGCCT+TGG - chr2_1:1277614-1277633 None:intergenic 55.0%
! CGAGCTTAAGAGGCGTGTCT+GGG - chr2_1:1277745-1277764 None:intergenic 55.0%
AGGTAAAGGCCACCACCAGT+GGG - chr2_1:1277821-1277840 None:intergenic 55.0%
AAGGTAAAGGCCACCACCAG+TGG - chr2_1:1277822-1277841 None:intergenic 55.0%
GTCTCTGTGGTAGGGCAAGT+GGG + chr2_1:1278781-1278800 Msa0186560:CDS 55.0%
TTTGCTAGCTCAAAGGGGGC+GGG - chr2_1:1278814-1278833 None:intergenic 55.0%
CTTTGCTAGCTCAAAGGGGG+CGG - chr2_1:1278815-1278834 None:intergenic 55.0%
GTCTGAAAGACCTCAGCTCG+AGG + chr2_1:1278986-1279005 Msa0186560:three_prime_UTR 55.0%
! AGGGAGGTGCGGTGCAAGAA+GGG - chr2_1:1272351-1272370 None:intergenic 60.0%
! TAGGGAGGTGCGGTGCAAGA+AGG - chr2_1:1272352-1272371 None:intergenic 60.0%
GGTCATCTATTGCGGGACGG+AGG - chr2_1:1273749-1273768 None:intergenic 60.0%
ACAACATGCCCCATCCCACC+AGG + chr2_1:1274277-1274296 Msa0186560:CDS 60.0%
CAACATGCCCCATCCCACCA+GGG + chr2_1:1274278-1274297 Msa0186560:CDS 60.0%
AGTTCCTCCCTGGTGGGATG+GGG - chr2_1:1274288-1274307 None:intergenic 60.0%
GAAGTTCCTCCCTGGTGGGA+TGG - chr2_1:1274290-1274309 None:intergenic 60.0%
!! ATAGCGAAGCACCGCAGTGG+TGG - chr2_1:1277145-1277164 None:intergenic 60.0%
!! GCTATAGCGAAGCACCGCAG+TGG - chr2_1:1277148-1277167 None:intergenic 60.0%
TTGTAGGTCCACCAGGGGGT+GGG - chr2_1:1277194-1277213 None:intergenic 60.0%
ATTGTAGGTCCACCAGGGGG+TGG - chr2_1:1277195-1277214 None:intergenic 60.0%
GCACTAGACCCCCGTGGTTA+AGG - chr2_1:1277394-1277413 None:intergenic 60.0%
GGACCAAGGCCTAACCCACA+AGG + chr2_1:1277608-1277627 Msa0186560:CDS 60.0%
! TCTGGCTAGCTCTCCTGGTC+AGG + chr2_1:1277673-1277692 Msa0186560:CDS 60.0%
! GCGAGCTTAAGAGGCGTGTC+TGG - chr2_1:1277746-1277765 None:intergenic 60.0%
TCTGAGAGACCCACTGGTGG+TGG + chr2_1:1277809-1277828 Msa0186560:CDS 60.0%
AGTAGCGCGTTGCACCACTC+AGG + chr2_1:1278309-1278328 Msa0186560:CDS 60.0%
CGTCTCTGTGGTAGGGCAAG+TGG + chr2_1:1278780-1278799 Msa0186560:CDS 60.0%
CGCCCCCTTTGAGCTAGCAA+AGG + chr2_1:1278813-1278832 Msa0186560:exon 60.0%
TGCCGCCCCATGGACACTGA+GGG + chr2_1:1276356-1276375 Msa0186560:intron 65.0%
CTCCCTCAGTGTCCATGGGG+CGG - chr2_1:1276361-1276380 None:intergenic 65.0%
CCACTTGCACTAGACCCCCG+TGG - chr2_1:1277400-1277419 None:intergenic 65.0%
CCACGGGGGTCTAGTGCAAG+TGG + chr2_1:1277397-1277416 Msa0186560:intron 65.0%
CATGCCCCATCCCACCAGGG+AGG + chr2_1:1274281-1274300 Msa0186560:CDS 70.0%
CTACCTCTGCTGCCGCCCCA+TGG + chr2_1:1276346-1276365 Msa0186560:intron 70.0%
TGTCCATGGGGCGGCAGCAG+AGG - chr2_1:1276352-1276371 None:intergenic 70.0%
CTGCCGCCCCATGGACACTG+AGG + chr2_1:1276355-1276374 Msa0186560:intron 70.0%
GCAGTATCAGGCCCACCCCC+TGG + chr2_1:1277180-1277199 Msa0186560:CDS 70.0%
GTATCAGGCCCACCCCCTGG+TGG + chr2_1:1277183-1277202 Msa0186560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 1272256 1279287 1272256 ID=Msa0186560;Name=Msa0186560
chr2_1 mRNA 1272256 1279287 1272256 ID=Msa0186560-mRNA-1;Parent=Msa0186560;Name=Msa0186560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=259|1|1|1|1|1|8|463|544
chr2_1 exon 1272256 1272661 1272256 ID=Msa0186560-mRNA-1:exon:524;Parent=Msa0186560-mRNA-1
chr2_1 exon 1272788 1272897 1272788 ID=Msa0186560-mRNA-1:exon:525;Parent=Msa0186560-mRNA-1
chr2_1 exon 1274228 1274498 1274228 ID=Msa0186560-mRNA-1:exon:526;Parent=Msa0186560-mRNA-1
chr2_1 exon 1276709 1276811 1276709 ID=Msa0186560-mRNA-1:exon:527;Parent=Msa0186560-mRNA-1
chr2_1 exon 1276908 1277253 1276908 ID=Msa0186560-mRNA-1:exon:528;Parent=Msa0186560-mRNA-1
chr2_1 exon 1277589 1277954 1277589 ID=Msa0186560-mRNA-1:exon:529;Parent=Msa0186560-mRNA-1
chr2_1 exon 1278252 1278330 1278252 ID=Msa0186560-mRNA-1:exon:530;Parent=Msa0186560-mRNA-1
chr2_1 exon 1278612 1279287 1278612 ID=Msa0186560-mRNA-1:exon:531;Parent=Msa0186560-mRNA-1
chr2_1 five_prime_UTR 1272256 1272514 1272256 ID=Msa0186560-mRNA-1:five_prime_utr;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1272515 1272661 1272515 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1272788 1272897 1272788 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1274228 1274498 1274228 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1276709 1276811 1276709 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1276908 1277253 1276908 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1277589 1277954 1277589 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1278252 1278330 1278252 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 CDS 1278612 1278824 1278612 ID=Msa0186560-mRNA-1:cds;Parent=Msa0186560-mRNA-1
chr2_1 three_prime_UTR 1278825 1279287 1278825 ID=Msa0186560-mRNA-1:three_prime_utr;Parent=Msa0186560-mRNA-1
Gene Sequence

>Msa0186560

ATGACTCTCAATTTAGCTGCTGTTGGAGCCTTGCTTCTATGTGTTGCTACTTCTTTGTTTCACATTACTTCAGCTGAAGATCCTTATAAATTCTTCAACTGGAATGTTACTTACGGTGACATTTACCCACTTGGAGTTCGTCAAAGGGGTATATTGATCAATGGGCAATTTCCTGGTCCAGACATTCATTCTGTTACAAACGACAACCTCATTATCAATGTCTTCAACAGTTTGAATGAACCCTTTCTCATCTCATGGAATGGGATCCAGCAGAGAAGGAACTCATTCGAAGATGGTGTTTCGGGAACAACATGCCCCATCCCACCAGGGAGGAACTTCACTTATATACTTCAAGTGAAGGATCAAATTGGAAGCTTTTACTACTTTCCATCTCTAGCATTTCAGAAAGCAGCTGGCGGTTTTGGAGGCATTAGGATACTCAGTAGGCCTAGAATTCCAGTTCCTTTCCCTGAACCAGCTGGAGATTACACTGTCCTTATTGGTGATTGGTACAAGTCCAACCATACGACATTGAAAGCCCATCTTGATAAGGGAAAGAAGCTTCCTATACCTGATGGAGTCCTAATCAATGGTCGTGGACCTAATGGATTATCATTCAACGTTGAACAAGGAAAGACTTATAGACTTAGGATATCAAACGTGGGATTGCAACATTCCCTTAACTTTCGAATTCAAAACCACAAACTGAAGTTGGTAGAAGTGGAAGGAACACACACACTTCAAACCACGTACTCCTCACTTGATGTTCATGTGGGACAATCTTACTCAGTGCTAGTAACTGCTGATCAACCTTCTCAGGACTACTACATTGTGGCTTCCACAAGATTCTCCTCTAAGATTCTCACCACCACTGCGGTGCTTCGCTATAGCAACTCTGCAGGCGCAGTATCAGGCCCACCCCCTGGTGGACCTACAATCCAAGTTGATTGGTCTTTGAACCAAGCCCGCTCAATCAGGACTAACCTTACAGCAAGTGGACCAAGGCCTAACCCACAAGGATCCTACCATTACGGTCTCATAAACACAACAAAGACAATCATTCTGGCTAGCTCTCCTGGTCAGGTTAATGGCAAGCAAAGATATGGAATAAACAGTGTGTCTTATGTTGTCCCAGACACGCCTCTTAAGCTCGCTGATTACTTCAAAATCTCCGGTGTTTTTCGCGTTGGAAGCATATCTGAGAGACCCACTGGTGGTGGCCTTTACCTTGACACATCTGTGATGCAAGCTGATTACAGATCTTTTGTTGAGATTGTCTTCCAAAACAACGAGAACATTGTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTTGTTGGTATGGATGGAGGACAGTGGACAACTTCTAGCAGAAACGGGTACAATCTTCGAGATGCAGTAGCGCGTTGCACCACTCAGGTATATCCCTATTCATGGACGGCTATTTATGTTGCACTTGACAACGTTGGAATGTGGAACTTGAGGACCGAGTTTTGGGCACGACAGTATCTTGGCCAACAATTTTATTTACGCGTTTACACAGCATCAACCTCAATCAGAGACGAGTTTCCTATTCCAAAGAATGCACGTCTCTGTGGTAGGGCAAGTGGGAGACATACCCGCCCCCTTTGA
Protein sequence

>Msa0186560

MTLNLAAVGALLLCVATSLFHITSAEDPYKFFNWNVTYGDIYPLGVRQRGILINGQFPGPDIHSVTNDNLIINVFNSLNEPFLISWNGIQQRRNSFEDGVSGTTCPIPPGRNFTYILQVKDQIGSFYYFPSLAFQKAAGGFGGIRILSRPRIPVPFPEPAGDYTVLIGDWYKSNHTTLKAHLDKGKKLPIPDGVLINGRGPNGLSFNVEQGKTYRLRISNVGLQHSLNFRIQNHKLKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPSQDYYIVASTRFSSKILTTTAVLRYSNSAGAVSGPPPGGPTIQVDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTTKTIILASSPGQVNGKQRYGINSVSYVVPDTPLKLADYFKISGVFRVGSISERPTGGGLYLDTSVMQADYRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTTSSRNGYNLRDAVARCTTQVYPYSWTAIYVALDNVGMWNLRTEFWARQYLGQQFYLRVYTASTSIRDEFPIPKNARLCGRASGRHTRPL*