AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072410 MtrunA17_Chr7g0254511 97.727 484 11 0 1 484 1 484 0.0 959
Msa1072410 MtrunA17_Chr7g0254521 72.473 465 127 1 24 487 25 489 0.0 709
Msa1072410 MtrunA17_Chr6g0460541 75.802 405 96 1 87 489 3 407 0.0 627
Msa1072410 MtrunA17_Chr7g0254531 73.116 398 106 1 89 485 1 398 0.0 589
Msa1072410 MtrunA17_Chr7g0254501 90.852 317 29 0 173 489 1 317 0.0 559
Msa1072410 MtrunA17_Chr5g0412541 49.590 488 238 3 1 480 1 488 2.68e-168 484
Msa1072410 MtrunA17_Chr3g0132531 49.064 481 241 4 3 481 21 499 5.12e-162 468
Msa1072410 MtrunA17_Chr8g0368001 46.288 458 245 1 30 486 50 507 8.47e-151 440
Msa1072410 MtrunA17_Chr1g0202761 46.121 464 247 2 25 486 38 500 1.27e-146 429
Msa1072410 MtrunA17_Chr5g0412771 47.265 457 236 2 31 482 57 513 1.33e-142 419
Msa1072410 MtrunA17_Chr4g0024501 45.781 474 245 3 12 473 36 509 4.67e-141 415
Msa1072410 MtrunA17_Chr2g0322671 45.359 474 247 3 12 473 24 497 6.09e-137 404
Msa1072410 MtrunA17_Chr6g0460531 69.318 264 73 2 3 265 4 260 4.32e-132 383
Msa1072410 MtrunA17_Chr5g0412571 48.111 397 204 2 87 481 38 434 7.40e-132 389
Msa1072410 MtrunA17_Chr2g0288281 48.062 387 199 1 89 473 1 387 2.28e-128 378
Msa1072410 MtrunA17_Chr1g0154441 48.062 387 200 1 89 474 1 387 3.27e-128 378
Msa1072410 MtrunA17_Chr7g0248051 45.011 451 248 0 22 472 62 512 1.44e-127 380
Msa1072410 MtrunA17_Chr6g0468531 38.958 480 281 4 10 479 5 482 1.98e-116 351
Msa1072410 MtrunA17_Chr6g0468521 38.631 453 277 1 22 474 23 474 3.61e-114 345
Msa1072410 MtrunA17_Chr5g0442331 41.542 467 264 3 20 479 31 495 8.22e-112 340
Msa1072410 MtrunA17_Chr3g0132541 40.084 474 210 8 3 464 10 421 2.39e-105 321
Msa1072410 MtrunA17_Chr6g0468511 36.947 452 284 1 22 473 23 473 4.45e-104 319
Msa1072410 MtrunA17_Chr6g0460521 74.661 221 56 0 264 484 1 221 2.92e-99 298
Msa1072410 MtrunA17_Chr6g0483361 35.358 461 293 3 14 470 10 469 1.41e-90 284
Msa1072410 MtrunA17_Chr6g0483381 34.839 465 298 3 10 470 8 471 1.86e-89 281
Msa1072410 MtrunA17_Chr7g0251331 35.611 483 308 2 6 486 3 484 1.24e-87 277
Msa1072410 MtrunA17_Chr1g0208791 33.698 457 295 4 12 462 23 477 2.28e-85 271
Msa1072410 MtrunA17_Chr6g0477961 35.666 443 278 4 33 470 31 471 7.05e-84 267
Msa1072410 MtrunA17_Chr6g0483331 34.130 460 294 6 25 478 7 463 3.57e-83 265
Msa1072410 MtrunA17_Chr6g0483341 33.262 469 300 7 14 472 21 486 1.26e-82 264
Msa1072410 MtrunA17_Chr2g0317131 37.391 460 274 3 13 461 20 476 2.09e-82 263
Msa1072410 MtrunA17_Chr6g0483351 37.008 381 236 2 89 465 1 381 2.10e-79 254
Msa1072410 MtrunA17_Chr2g0317171 36.034 469 282 5 6 461 7 470 9.06e-79 254
Msa1072410 MtrunA17_Chr8g0392601 32.667 450 290 4 30 472 13 456 2.35e-78 253
Msa1072410 MtrunA17_Chr2g0317161 36.404 456 276 4 17 461 12 464 1.44e-77 251
Msa1072410 MtrunA17_Chr2g0317151 38.215 437 262 2 30 461 33 466 1.62e-77 250
Msa1072410 MtrunA17_Chr1g0208821 32.636 478 312 4 1 470 8 483 8.31e-77 249
Msa1072410 MtrunA17_Chr6g0449061 31.884 483 314 5 3 479 9 482 5.03e-76 246
Msa1072410 MtrunA17_Chr2g0317221 40.157 381 220 3 86 461 7 384 3.41e-74 239
Msa1072410 MtrunA17_Chr7g0254491 92.241 116 9 0 1 116 1 116 2.37e-73 227
Msa1072410 MtrunA17_Chr1g0208881 32.623 469 310 3 6 470 1 467 5.01e-73 238
Msa1072410 MtrunA17_Chr1g0208891 33.615 473 299 5 6 470 1 466 1.70e-71 234
Msa1072410 MtrunA17_Chr6g0483161 33.158 380 233 2 87 464 1 361 4.72e-68 222
Msa1072410 MtrunA17_Chr3g0140931 28.602 465 314 5 14 468 35 491 6.12e-63 214
Msa1072410 MtrunA17_Chr7g0251321 32.152 395 247 2 89 481 1 376 3.07e-62 207
Msa1072410 MtrunA17_Chr5g0428251 25.678 479 345 4 7 479 32 505 1.37e-52 186
Msa1072410 MtrunA17_Chr5g0397991 27.416 445 313 4 30 468 65 505 4.89e-52 184
Msa1072410 MtrunA17_Chr1g0203791 27.292 469 315 5 14 468 48 504 1.18e-51 183
Msa1072410 MtrunA17_Chr5g0440661 30.570 386 193 6 89 472 1 313 7.71e-50 173
Msa1072410 MtrunA17_Chr6g0467321 26.337 505 343 6 3 483 7 506 1.71e-49 177
Msa1072410 MtrunA17_Chr8g0364761 33.663 303 187 4 7 296 21 322 5.65e-49 171
Msa1072410 MtrunA17_Chr6g0473701 26.840 462 324 5 27 480 125 580 2.27e-48 176
Msa1072410 MtrunA17_Chr4g0013031 25.380 461 336 3 27 479 63 523 6.93e-47 170
Msa1072410 MtrunA17_Chr8g0364751 48.276 174 90 0 301 474 6 179 4.84e-44 153
Msa1072410 MtrunA17_Chr8g0389801 27.232 448 292 8 30 460 23 453 3.24e-40 150
Msa1072410 MtrunA17_Chr6g0483264 34.314 204 134 0 267 470 1 204 2.13e-33 126
Msa1072410 MtrunA17_Chr2g0295631 23.448 435 307 4 60 472 50 480 7.30e-31 125
Msa1072410 MtrunA17_Chr6g0483221 35.714 154 99 0 310 463 2 155 1.07e-29 114
Msa1072410 MtrunA17_Chr6g0483241 38.798 183 106 4 87 265 1 181 1.26e-28 111
Msa1072410 MtrunA17_Chr6g0460551 73.913 69 17 1 19 86 25 93 7.43e-26 102
Msa1072410 MtrunA17_Chr6g0483261 34.783 161 105 0 310 470 2 162 1.41e-23 97.8
Msa1072410 MtrunA17_Chr5g0442311 34.078 179 116 1 89 265 1 179 2.32e-23 97.1
Msa1072410 MtrunA17_Chr6g0487091 26.039 361 237 7 141 486 57 402 2.95e-22 99.0
Msa1072410 MtrunA17_Chr5g0398571 29.439 214 151 0 254 467 73 286 4.33e-19 88.2
Msa1072410 MtrunA17_Chr5g0412561 49.315 73 37 0 14 86 20 92 2.28e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072410 AT1G33110.1 65.574 488 164 3 2 485 4 491 0.0 669
Msa1072410 AT1G33100.1 63.485 482 175 1 5 485 7 488 0.0 654
Msa1072410 AT1G33090.1 62.474 485 178 3 5 485 7 491 0.0 628
Msa1072410 AT1G33080.1 62.190 484 179 2 5 484 7 490 0.0 625
Msa1072410 AT1G33080.2 63.715 463 164 2 5 463 7 469 0.0 611
Msa1072410 AT1G33110.2 66.500 400 130 3 2 397 4 403 0.0 548
Msa1072410 AT5G65380.1 50.526 475 232 3 2 474 9 482 8.97e-165 475
Msa1072410 AT5G44050.1 49.582 478 235 3 4 477 13 488 1.71e-164 474
Msa1072410 AT1G47530.1 46.250 480 251 3 1 474 1 479 7.58e-151 439
Msa1072410 AT4G00350.1 47.297 444 234 0 31 474 88 531 2.72e-150 440
Msa1072410 AT5G10420.1 47.510 482 246 5 4 482 12 489 3.93e-149 435
Msa1072410 AT1G12950.1 47.682 453 236 1 31 482 67 519 3.89e-144 424
Msa1072410 AT3G26590.1 47.297 444 233 1 31 473 45 488 2.37e-143 421
Msa1072410 AT4G25640.1 46.764 479 249 2 10 482 7 485 4.70e-141 414
Msa1072410 AT4G25640.2 46.764 479 249 2 10 482 7 485 1.46e-140 414
Msa1072410 AT3G03620.2 44.043 470 262 1 15 483 21 490 2.47e-140 413
Msa1072410 AT3G03620.1 44.043 470 262 1 15 483 21 490 2.47e-140 413
Msa1072410 AT1G11670.1 44.534 494 253 4 1 473 1 494 3.23e-140 413
Msa1072410 AT1G61890.1 45.553 461 245 2 19 473 31 491 1.13e-139 411
Msa1072410 AT5G38030.1 45.374 454 247 1 31 483 45 498 2.77e-138 408
Msa1072410 AT5G17700.2 42.647 476 271 2 2 475 4 479 7.52e-138 407
Msa1072410 AT5G17700.1 42.647 476 271 2 2 475 4 479 7.52e-138 407
Msa1072410 AT1G23300.1 45.969 459 243 2 31 488 44 498 1.70e-137 406
Msa1072410 AT3G21690.1 46.578 453 240 1 24 474 45 497 5.55e-136 402
Msa1072410 AT1G61890.2 44.444 468 252 3 5 464 15 482 2.75e-135 400
Msa1072410 AT1G47530.2 48.705 386 197 1 89 473 1 386 1.10e-130 384
Msa1072410 AT4G25640.3 47.552 429 219 2 10 432 7 435 7.60e-128 380
Msa1072410 AT3G26590.2 47.927 386 200 1 89 473 1 386 7.05e-126 372
Msa1072410 AT4G21910.2 42.082 461 260 3 19 473 41 500 2.40e-125 375
Msa1072410 AT4G21910.4 42.082 461 260 3 19 473 41 500 2.40e-125 375
Msa1072410 AT4G21910.3 40.202 495 271 5 3 473 5 498 3.08e-125 375
Msa1072410 AT4G21910.1 40.202 495 271 5 3 473 5 498 3.08e-125 375
Msa1072410 AT4G21903.1 44.131 426 233 4 51 473 73 496 2.98e-122 367
Msa1072410 AT4G21903.2 42.825 446 243 6 51 489 73 513 3.13e-119 360
Msa1072410 AT1G61890.3 44.186 430 234 2 19 442 31 460 6.22e-119 357
Msa1072410 AT3G59030.1 40.119 506 278 5 1 483 1 504 1.09e-117 355
Msa1072410 AT4G21903.3 44.845 388 210 3 89 473 1 387 6.81e-116 347
Msa1072410 AT5G17700.3 42.211 398 228 2 2 397 4 401 1.46e-109 331
Msa1072410 AT5G52450.1 35.269 465 295 2 25 485 20 482 1.91e-88 279
Msa1072410 AT2G34360.1 34.884 473 290 6 20 485 16 477 7.88e-86 272
Msa1072410 AT3G59030.2 37.890 417 235 4 1 394 1 416 1.67e-84 267
Msa1072410 AT1G73700.1 36.129 465 289 5 20 479 13 474 4.61e-83 265
Msa1072410 AT1G71140.1 33.983 462 291 5 17 470 12 467 2.34e-80 258
Msa1072410 AT1G66760.2 32.495 477 309 4 10 480 10 479 7.23e-76 246
Msa1072410 AT2G34360.2 31.933 476 266 4 16 485 12 435 1.21e-75 244
Msa1072410 AT1G15150.1 34.136 457 286 6 31 480 31 479 4.93e-74 242
Msa1072410 AT1G66760.1 32.826 460 296 4 10 463 10 462 2.13e-73 239
Msa1072410 AT1G66780.1 34.507 426 275 2 48 470 52 476 4.44e-72 236
Msa1072410 AT1G15160.1 31.677 483 306 7 14 480 5 479 7.36e-72 236
Msa1072410 AT2G04080.1 33.192 473 294 9 14 470 2 468 1.91e-71 234
Msa1072410 AT1G15170.1 33.402 482 302 8 1 470 1 475 7.29e-71 233
Msa1072410 AT2G04080.2 32.836 469 293 9 14 466 2 464 6.55e-69 228
Msa1072410 AT2G04070.1 32.543 464 302 5 16 470 7 468 9.32e-69 228
Msa1072410 AT2G04040.1 33.259 448 285 7 31 470 27 468 1.04e-68 228
Msa1072410 AT3G23560.1 32.340 470 307 2 3 461 2 471 3.02e-68 226
Msa1072410 AT1G64820.1 30.942 446 300 4 30 470 28 470 2.61e-67 224
Msa1072410 AT2G04050.1 32.692 468 303 5 10 470 6 468 5.88e-67 223
Msa1072410 AT3G23550.1 33.486 436 284 3 30 461 30 463 5.25e-66 220
Msa1072410 AT2G04100.1 31.416 452 300 4 25 470 24 471 6.28e-63 213
Msa1072410 AT1G15180.1 33.333 447 286 6 31 470 35 476 1.09e-62 212
Msa1072410 AT2G04090.1 31.333 450 291 6 31 470 30 471 1.24e-61 209
Msa1072410 AT2G04100.2 31.544 447 296 4 25 465 24 466 1.35e-61 209
Msa1072410 AT1G15150.2 34.783 368 228 5 120 480 1 363 3.34e-60 202
Msa1072410 AT1G15170.2 34.078 358 227 4 120 470 1 356 3.25e-58 197
Msa1072410 AT2G38510.1 25.108 462 339 3 27 483 2 461 3.61e-50 179
Msa1072410 AT1G66760.3 32.335 334 224 1 132 463 1 334 5.60e-50 174
Msa1072410 AT1G66760.4 30.691 391 258 4 10 394 10 393 2.57e-49 174
Msa1072410 AT1G58340.1 25.167 449 326 3 30 472 57 501 1.32e-47 172
Msa1072410 AT3G23560.2 32.041 387 252 2 19 394 18 404 1.60e-47 170
Msa1072410 AT4G29140.1 25.153 489 344 6 1 479 29 505 2.02e-41 155
Msa1072410 AT1G71870.1 24.206 504 342 9 7 483 7 497 5.50e-41 154
Msa1072410 AT5G19700.1 25.053 475 335 5 7 468 9 475 4.80e-40 151
Msa1072410 AT5G52050.1 25.114 438 286 6 55 467 59 479 4.75e-35 137
Msa1072410 AT4G23030.1 24.742 485 353 5 6 483 8 487 7.03e-33 131
Msa1072410 AT5G49130.1 25.667 487 334 8 11 478 12 489 1.60e-32 130
Msa1072410 AT1G15180.2 31.560 282 184 5 120 394 1 280 8.21e-29 118
Msa1072410 AT4G22790.1 24.494 494 336 12 15 489 11 486 1.31e-27 115
Msa1072410 AT2G04066.1 38.400 125 76 1 347 470 39 163 4.10e-24 99.4

Find 121 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATTGGATGCCAAATT+TGG 0.094262 7_2:-69479818 Msa1072410:CDS
CCATTTATTAACACGATTTC+TGG 0.107535 7_2:+69477701 None:intergenic
CCAGAAATCGTGTTAATAAA+TGG 0.153553 7_2:-69477701 Msa1072410:CDS
CATTTCCACTTCTTCTACTA+TGG 0.160377 7_2:+69480890 None:intergenic
TGGCCAAGTGCCACTAAAAT+TGG 0.210821 7_2:+69480069 None:intergenic
AAGTTCAAGTTTGGCCTTAA+TGG 0.236077 7_2:-69479862 Msa1072410:CDS
AAAACAAGCTGCCCCAAATT+TGG 0.237889 7_2:+69479805 None:intergenic
TTGGACACTGTTCATTAATA+TGG 0.243362 7_2:+69478937 None:intergenic
ATCAAGCTTTCTTTATCTTC+TGG 0.246424 7_2:-69479712 Msa1072410:CDS
TGTGATTATCATAAGCATTA+TGG 0.251121 7_2:+69477856 None:intergenic
TACCTAATTGGTATTCCTAT+TGG 0.253015 7_2:-69478551 Msa1072410:CDS
CATTAGCCACATCTGGATTT+GGG 0.265681 7_2:+69478993 None:intergenic
CCATTGATGCTCTTGCTATA+TGG 0.272797 7_2:-69479500 Msa1072410:intron
GCATTAGCCACATCTGGATT+TGG 0.277971 7_2:+69478992 None:intergenic
CATATATATGTTGCACTAAT+AGG 0.287588 7_2:+69480951 None:intergenic
TGTTCTTGCTTTGTGCTTGT+AGG 0.291347 7_2:+69479953 None:intergenic
CAATCCTTCATTGGTCATAT+TGG 0.293119 7_2:-69480702 Msa1072410:CDS
CAGGTTTGCAAATGGTATTC+TGG 0.301200 7_2:-69480634 Msa1072410:intron
TGTTGAAAACCTATTGAATA+TGG 0.301753 7_2:+69480746 None:intergenic
ATAGGCTGCTATTACCTAAT+TGG 0.305303 7_2:-69478563 Msa1072410:CDS
AACAGGCCAAAGATCTTTAA+AGG 0.330427 7_2:+69479735 None:intergenic
GCTTATTGGATGCCAAATTT+GGG 0.332361 7_2:-69479817 Msa1072410:CDS
GAAAATATTGCACAAGTTGC+TGG 0.335153 7_2:-69480042 Msa1072410:CDS
TGCAATGACATCCATCCTTT+TGG 0.335752 7_2:-69479839 Msa1072410:CDS
TGTAAGCAAGTCTTCCTCTT+AGG 0.344861 7_2:+69479023 None:intergenic
GAGAAACCCTTCCATGTATC+AGG 0.346664 7_2:+69479766 None:intergenic
GTTTGGATTGGAATGTTGTT+TGG 0.348970 7_2:-69477893 Msa1072410:CDS
TATCTTCTGGAGCTATGTTA+TGG 0.352221 7_2:-69479699 Msa1072410:intron
TTAACTGTTAAGTTCAAGTT+TGG 0.352285 7_2:-69479871 Msa1072410:CDS
TATTCTCCATTTGCAAGTTA+AGG 0.357518 7_2:-69478513 Msa1072410:intron
TCTTGATATTCTTCTTTAGT+TGG 0.358461 7_2:+69477635 None:intergenic
TGGATGTCATTGCACCATTA+AGG 0.369349 7_2:+69479848 None:intergenic
TCAGTAAAGAAAGTCTAATA+AGG 0.372663 7_2:-69477601 Msa1072410:three_prime_UTR
CATAGTAGAAGAAGTGGAAA+TGG 0.391136 7_2:-69480889 Msa1072410:exon
CTCCAATAGGAATACCAATT+AGG 0.396168 7_2:+69478549 None:intergenic
GATAAAGAAAGCTTGATAAC+AGG 0.397818 7_2:+69479718 None:intergenic
TTGTTATGACTGTCCTAGTC+AGG 0.399000 7_2:-69480653 Msa1072410:CDS
CAGGCCCTGCCATATTCAAT+AGG 0.402161 7_2:-69480755 Msa1072410:CDS
GGCTCTTCTTCCTCCTCTGA+AGG 0.408718 7_2:+69480825 None:intergenic
CCATATAGCAAGAGCATCAA+TGG 0.415111 7_2:+69479500 None:intergenic
TTTGTGCTTGTAGGAACATT+TGG 0.420861 7_2:+69479962 None:intergenic
TTGAAAATTGTAGTTGGGTA+TGG 0.421860 7_2:-69480229 Msa1072410:intron
CCAACTGCATTAGCCACATC+TGG 0.423816 7_2:+69478986 None:intergenic
TTACCAAGCACAACTCCAAT+AGG 0.429954 7_2:+69478536 None:intergenic
AAGGGCATAAGCAGCTAATT+CGG 0.440329 7_2:+69480674 None:intergenic
GTAGTTGCTCAATCCTTCAT+TGG 0.440406 7_2:-69480711 Msa1072410:CDS
GAATTACCTTAACTTGCAAA+TGG 0.446854 7_2:+69478507 None:intergenic
CAGAAATCGTGTTAATAAAT+GGG 0.446923 7_2:-69477700 Msa1072410:CDS
AAGAAGAGCCACTAAGGAAA+AGG 0.447419 7_2:-69480812 Msa1072410:CDS
TTGCTGGAAGCATTTCAATA+TGG 0.449250 7_2:-69480026 Msa1072410:CDS
AGCATTTCAATATGGTCAAT+AGG 0.456375 7_2:-69480018 Msa1072410:CDS
ACACTATGTGGACAAGCATA+TGG 0.467239 7_2:-69480192 Msa1072410:CDS
ATAGGTGTTTCTGTTGGAGC+TGG 0.468391 7_2:-69478614 Msa1072410:intron
TTTGCAGCCTCAACATCAAT+GGG 0.469922 7_2:-69479375 Msa1072410:intron
GAAAACCTATTGAATATGGC+AGG 0.470460 7_2:+69480750 None:intergenic
GCTCTTCTTCCTCCTCTGAA+GGG 0.476165 7_2:+69480826 None:intergenic
TTGATCTTTCTGTTCCTAAG+AGG 0.477472 7_2:-69479037 Msa1072410:CDS
AAGTGCCACTAAAATTGGTT+TGG 0.478153 7_2:+69480074 None:intergenic
GAGTGTATCTTCAAAGATCA+TGG 0.479506 7_2:-69480146 Msa1072410:CDS
GTGTTTCTGTTGGAGCTGGC+TGG 0.479528 7_2:-69478610 Msa1072410:CDS
AGCCACTAAGGAAAAGGGTA+TGG 0.482191 7_2:-69480806 Msa1072410:CDS
AAAATCATATCTAGCCTCTA+GGG 0.484679 7_2:+69477527 None:intergenic
AGTGTCCAACCAGTGCTCTC+TGG 0.491944 7_2:-69478923 Msa1072410:intron
GTGCTCACATCATTTGCCAT+TGG 0.492593 7_2:-69479073 Msa1072410:CDS
TAATCACATTTAAGACTGAC+TGG 0.493785 7_2:-69477841 Msa1072410:CDS
GCAAAACAATATGATATGCT+TGG 0.495199 7_2:-69480168 Msa1072410:CDS
GGGAAGAAAGCAAGAAATTG+TGG 0.497231 7_2:-69480785 Msa1072410:CDS
AGGAGGAAGAAGAGCCACTA+AGG 0.500928 7_2:-69480818 Msa1072410:CDS
ATTCCTATTGGAGTTGTGCT+TGG 0.501302 7_2:-69478539 Msa1072410:CDS
AAGAAATTGTGGATAGTAGC+AGG 0.502559 7_2:-69480774 Msa1072410:CDS
AGAAGAGCCACTAAGGAAAA+GGG 0.507893 7_2:-69480811 Msa1072410:CDS
TGAACCAATATGACCAATGA+AGG 0.509207 7_2:+69480698 None:intergenic
ATAGTAGAAGAAGTGGAAAT+GGG 0.513164 7_2:-69480888 Msa1072410:exon
TTGGCATCCAATAAGCCAAA+AGG 0.517836 7_2:+69479824 None:intergenic
TGACAAAATGTCCTGATACA+TGG 0.517890 7_2:-69479777 Msa1072410:CDS
TTGGTTTCTTTGCTGCAGCT+AGG 0.518538 7_2:-69479333 Msa1072410:intron
GTTAGGGTGTCGAATGAACT+AGG 0.518686 7_2:-69479139 Msa1072410:CDS
TTTCCCACCCATTGATGTTG+AGG 0.520512 7_2:+69479368 None:intergenic
CAGCTCCATAGTAGAAGAAG+TGG 0.525322 7_2:-69480895 Msa1072410:five_prime_UTR
TTGTGAATAGGTGTTTCTGT+TGG 0.527931 7_2:-69478620 Msa1072410:intron
GTCCTAGTCAGGTTTGCAAA+TGG 0.528064 7_2:-69480642 Msa1072410:CDS
CCAGATGTGGCTAATGCAGT+TGG 0.534123 7_2:-69478986 Msa1072410:CDS
TGTTAATAAATGGGCTGTAG+TGG 0.537932 7_2:-69477691 Msa1072410:CDS
GATTCTTCTAACAGGGAACA+TGG 0.541639 7_2:-69479538 Msa1072410:CDS
ATGAATCAAACAACACATCA+AGG 0.547424 7_2:-69477662 Msa1072410:CDS
AATTGGAAGAAGAAGAATTG+AGG 0.547786 7_2:+69480107 None:intergenic
GTGTCGAATGAACTAGGAAG+AGG 0.554484 7_2:-69479133 Msa1072410:CDS
TAAGACTGACTGGGACAAGC+AGG 0.560914 7_2:-69477831 Msa1072410:intron
TGGGAAATGATGACAGCCCT+TGG 0.564116 7_2:-69479352 Msa1072410:CDS
TATTAATCAAGGTTTAAATG+AGG 0.568253 7_2:-69480977 Msa1072410:five_prime_UTR
GTTGTAGCATATGTCAACAT+AGG 0.569004 7_2:-69478581 Msa1072410:CDS
CAAGAATAGCACAAATCCAA+TGG 0.586224 7_2:+69479057 None:intergenic
AAATATTTACCAGAGAGCAC+TGG 0.586611 7_2:+69478914 None:intergenic
AAAATGTCCTGATACATGGA+AGG 0.587310 7_2:-69479773 Msa1072410:CDS
TACCATTTGCAAACCTGACT+AGG 0.588271 7_2:+69480640 None:intergenic
ATTAGCCACATCTGGATTTG+GGG 0.588466 7_2:+69478994 None:intergenic
GCAGCCTCAACATCAATGGG+TGG 0.590413 7_2:-69479372 Msa1072410:intron
GCAGCATCAAAACCCTTCAG+AGG 0.592540 7_2:-69480838 Msa1072410:CDS
GCCACTAAGGAAAAGGGTAT+GGG 0.595578 7_2:-69480805 Msa1072410:CDS
CAGCCTCAACATCAATGGGT+GGG 0.609170 7_2:-69479371 Msa1072410:CDS
TAGCTGCAGCAAAGAAACCA+AGG 0.611276 7_2:+69479335 None:intergenic
CTTATTGGATGCCAAATTTG+GGG 0.612153 7_2:-69479816 Msa1072410:CDS
AACTAAAGAAGAATATCAAG+AGG 0.616189 7_2:-69477633 Msa1072410:exon
TGACTAGGACAGTCATAACA+AGG 0.618469 7_2:+69480655 None:intergenic
GCATCAAAACCCTTCAGAGG+AGG 0.620658 7_2:-69480835 Msa1072410:CDS
AAATCATATCTAGCCTCTAG+GGG 0.624956 7_2:+69477528 None:intergenic
ACTAGGAAGAGGGAGTTCCA+AGG 0.626189 7_2:-69479122 Msa1072410:CDS
TGTCGAATGAACTAGGAAGA+GGG 0.634314 7_2:-69479132 Msa1072410:CDS
CATCCAATAAGCCAAAAGGA+TGG 0.636104 7_2:+69479828 None:intergenic
TTTCACCCCAAATCCAGATG+TGG 0.637534 7_2:-69478999 Msa1072410:CDS
TCTAGTCAAAATACCCCTAG+AGG 0.644635 7_2:-69477541 Msa1072410:three_prime_UTR
AGCTGCAGCAAAGAAACCAA+GGG 0.647868 7_2:+69479336 None:intergenic
AAATGTCCTGATACATGGAA+GGG 0.649772 7_2:-69479772 Msa1072410:CDS
AATCACATTTAAGACTGACT+GGG 0.658771 7_2:-69477840 Msa1072410:CDS
AAAACCTATTGAATATGGCA+GGG 0.658833 7_2:+69480751 None:intergenic
TTGAAATTGAAACTGCTGCA+AGG 0.660479 7_2:+69479917 None:intergenic
ATTTACCAGAGAGCACTGGT+TGG 0.661356 7_2:+69478918 None:intergenic
TGTGAGCACTGTTATCACAA+TGG 0.707567 7_2:+69479087 None:intergenic
GACTAGGACAGTCATAACAA+GGG 0.709723 7_2:+69480656 None:intergenic
AGTGCATTAGAAACACTATG+TGG 0.716160 7_2:-69480204 Msa1072410:CDS
AATATGGAGAATGATAACAA+AGG 0.716405 7_2:+69478953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTACTAAATAACAT+AGG - chr7_2:69480356-69480375 Msa1072410:intron 10.0%
!! TTTATATATAAACAAAGTAA+CGG + chr7_2:69480384-69480403 None:intergenic 10.0%
!!! TCAATTTTTAAGATTATGTA+TGG - chr7_2:69478789-69478808 Msa1072410:intron 15.0%
!! CTCTTTATATTATATATATG+TGG + chr7_2:69480453-69480472 None:intergenic 15.0%
!!! TAATAACATATGTATTTTAC+AGG - chr7_2:69480708-69480727 Msa1072410:CDS 15.0%
!!! ATATAATTTTTTGAAGGAAT+TGG + chr7_2:69480978-69480997 None:intergenic 15.0%
!! TATTAATCAAGGTTTAAATG+AGG - chr7_2:69477464-69477483 Msa1072410:three_prime_UTR 20.0%
!!! AATGTAATAATTTAGAGCAA+AGG - chr7_2:69479186-69479205 Msa1072410:intron 20.0%
!! AAAATTGAATCAATAAGCAA+TGG + chr7_2:69479576-69479595 None:intergenic 20.0%
!!! ATTTTAGTCCTTAAGATTAT+AGG - chr7_2:69479620-69479639 Msa1072410:intron 20.0%
!!! ACAACATTTTTAGATGAATT+TGG + chr7_2:69479802-69479821 None:intergenic 20.0%
!!! TAATTCATTTGTCATTTACA+TGG - chr7_2:69479951-69479970 Msa1072410:CDS 20.0%
!! ATAACATATCAACATTACAT+TGG + chr7_2:69480335-69480354 None:intergenic 20.0%
!! AATGATTAAAGAGATATTGT+TGG - chr7_2:69480497-69480516 Msa1072410:intron 20.0%
!! CTGCTTAAAATTATAAGAAA+CGG + chr7_2:69480684-69480703 None:intergenic 20.0%
! CATATATATGTTGCACTAAT+AGG + chr7_2:69477493-69477512 None:intergenic 25.0%
! TGTTGAAAACCTATTGAATA+TGG + chr7_2:69477698-69477717 None:intergenic 25.0%
!! TTCAATAGGTTTTCAACATT+TGG - chr7_2:69477700-69477719 Msa1072410:CDS 25.0%
! CTATAATACAATTGTGATTG+AGG + chr7_2:69477916-69477935 None:intergenic 25.0%
! CTATAATACTATTGCAATTG+AGG + chr7_2:69478046-69478065 None:intergenic 25.0%
! TGCAAATTGAAAATTGTAGT+TGG - chr7_2:69478206-69478225 Msa1072410:intron 25.0%
! GCAAATTGAAAATTGTAGTT+GGG - chr7_2:69478207-69478226 Msa1072410:intron 25.0%
!! GGTTTGGTAAAAATGTAAAT+TGG + chr7_2:69478354-69478373 None:intergenic 25.0%
!! TTTTACCAAACCAATTTTAG+TGG - chr7_2:69478362-69478381 Msa1072410:intron 25.0%
!!! CAATACATGTTTTTATGTCA+TGG - chr7_2:69478544-69478563 Msa1072410:CDS 25.0%
!! TTAACTGTTAAGTTCAAGTT+TGG - chr7_2:69478570-69478589 Msa1072410:CDS 25.0%
!! GTTTGTAATCAAAGTTTGTT+TGG - chr7_2:69478811-69478830 Msa1072410:intron 25.0%
!! ACTTTTACAGTCTTGAAATA+TGG - chr7_2:69478866-69478885 Msa1072410:intron 25.0%
!! TCTTGTCAGTACTAAATTTT+AGG - chr7_2:69479256-69479275 Msa1072410:intron 25.0%
!!! TACATTTTTTTTGCAGTGTT+AGG - chr7_2:69479285-69479304 Msa1072410:intron 25.0%
!!! ACATTTTTTTTGCAGTGTTA+GGG - chr7_2:69479286-69479305 Msa1072410:intron 25.0%
! AATATGGAGAATGATAACAA+AGG + chr7_2:69479491-69479510 None:intergenic 25.0%
! GCTATTTGATCTCTAATTAA+TGG + chr7_2:69479677-69479696 None:intergenic 25.0%
! CTAAAAATGTTGTTGTGAAT+AGG - chr7_2:69479809-69479828 Msa1072410:CDS 25.0%
!!! CTTTTTGGTAATTATGTCAT+TGG - chr7_2:69480159-69480178 Msa1072410:CDS 25.0%
! GATGAAAAAATATGGTTGAT+AGG + chr7_2:69480262-69480281 None:intergenic 25.0%
! CTTTAATCATTATGCGATAT+AGG + chr7_2:69480488-69480507 None:intergenic 25.0%
! TGTGATTATCATAAGCATTA+TGG + chr7_2:69480588-69480607 None:intergenic 25.0%
! CAGAAATCGTGTTAATAAAT+GGG - chr7_2:69480741-69480760 Msa1072410:CDS 25.0%
! TCTTGATATTCTTCTTTAGT+TGG + chr7_2:69480809-69480828 None:intergenic 25.0%
! AACTAAAGAAGAATATCAAG+AGG - chr7_2:69480808-69480827 Msa1072410:CDS 25.0%
! TCAGTAAAGAAAGTCTAATA+AGG - chr7_2:69480840-69480859 Msa1072410:CDS 25.0%
ATAGTAGAAGAAGTGGAAAT+GGG - chr7_2:69477553-69477572 Msa1072410:three_prime_UTR 30.0%
AAAACCTATTGAATATGGCA+GGG + chr7_2:69477693-69477712 None:intergenic 30.0%
! GTTTTCAACATTTGGTATCA+TGG - chr7_2:69477708-69477727 Msa1072410:CDS 30.0%
GATTGTGATTTAAGAGATTG+AGG + chr7_2:69477846-69477865 None:intergenic 30.0%
CAATTGTATTTGTGACATCA+AGG + chr7_2:69477949-69477968 None:intergenic 30.0%
TTGTATTTGTGACAGACATA+TGG + chr7_2:69478079-69478098 None:intergenic 30.0%
TTGAAAATTGTAGTTGGGTA+TGG - chr7_2:69478212-69478231 Msa1072410:intron 30.0%
GCAAAACAATATGATATGCT+TGG - chr7_2:69478273-69478292 Msa1072410:intron 30.0%
AATTGGAAGAAGAAGAATTG+AGG + chr7_2:69478337-69478356 None:intergenic 30.0%
! CTTGTGCAATATTTTCATCT+TGG + chr7_2:69478395-69478414 None:intergenic 30.0%
AGCATTTCAATATGGTCAAT+AGG - chr7_2:69478423-69478442 Msa1072410:intron 30.0%
!! TTTTGGCCTTTAAAGATCTT+TGG - chr7_2:69478700-69478719 Msa1072410:intron 30.0%
! GATAAAGAAAGCTTGATAAC+AGG + chr7_2:69478726-69478745 None:intergenic 30.0%
ATCAAGCTTTCTTTATCTTC+TGG - chr7_2:69478729-69478748 Msa1072410:intron 30.0%
!! ATAGCTTCATGTTAGTCTTA+TGG + chr7_2:69478842-69478861 None:intergenic 30.0%
ATAAGACTAACATGAAGCTA+TGG - chr7_2:69478841-69478860 Msa1072410:intron 30.0%
!!! ACAGTTTTGATTCTTCTAAC+AGG - chr7_2:69478895-69478914 Msa1072410:intron 30.0%
!!! CAGTTTTGATTCTTCTAACA+GGG - chr7_2:69478896-69478915 Msa1072410:intron 30.0%
!! TAGTACTGACAAGAAACTTA+GGG + chr7_2:69479250-69479269 None:intergenic 30.0%
!! TTAGTACTGACAAGAAACTT+AGG + chr7_2:69479251-69479270 None:intergenic 30.0%
TTGGACACTGTTCATTAATA+TGG + chr7_2:69479507-69479526 None:intergenic 30.0%
TTAGTCCTTAAGATTATAGG+TGG - chr7_2:69479623-69479642 Msa1072410:intron 30.0%
ATGGCAGAGAATATTAGATA+AGG + chr7_2:69479658-69479677 None:intergenic 30.0%
ACTGTCAGATCTTAAATCAA+CGG + chr7_2:69479745-69479764 None:intergenic 30.0%
TACCTAATTGGTATTCCTAT+TGG - chr7_2:69479890-69479909 Msa1072410:CDS 30.0%
TATTCTCCATTTGCAAGTTA+AGG - chr7_2:69479928-69479947 Msa1072410:CDS 30.0%
!! GAATTACCTTAACTTGCAAA+TGG + chr7_2:69479937-69479956 None:intergenic 30.0%
! ACCAAAAAGTGTAGTTGAAA+GGG + chr7_2:69480148-69480167 None:intergenic 30.0%
! TACCAAAAAGTGTAGTTGAA+AGG + chr7_2:69480149-69480168 None:intergenic 30.0%
ACAGACAACTAATATGTGTT+GGG - chr7_2:69480204-69480223 Msa1072410:CDS 30.0%
TATCAACATTACATTGGTCA+GGG + chr7_2:69480329-69480348 None:intergenic 30.0%
ATATCAACATTACATTGGTC+AGG + chr7_2:69480330-69480349 None:intergenic 30.0%
!! ATATTGTTGGTGCTGAAATT+GGG - chr7_2:69480510-69480529 Msa1072410:intron 30.0%
! TAATCACATTTAAGACTGAC+TGG - chr7_2:69480600-69480619 Msa1072410:intron 30.0%
! AATCACATTTAAGACTGACT+GGG - chr7_2:69480601-69480620 Msa1072410:intron 30.0%
CCATTTATTAACACGATTTC+TGG + chr7_2:69480743-69480762 None:intergenic 30.0%
CCAGAAATCGTGTTAATAAA+TGG - chr7_2:69480740-69480759 Msa1072410:CDS 30.0%
ATGAATCAAACAACACATCA+AGG - chr7_2:69480779-69480798 Msa1072410:CDS 30.0%
AAAATCATATCTAGCCTCTA+GGG + chr7_2:69480917-69480936 None:intergenic 30.0%
AAAAATCATATCTAGCCTCT+AGG + chr7_2:69480918-69480937 None:intergenic 30.0%
CATTTCCACTTCTTCTACTA+TGG + chr7_2:69477554-69477573 None:intergenic 35.0%
CATAGTAGAAGAAGTGGAAA+TGG - chr7_2:69477552-69477571 Msa1072410:three_prime_UTR 35.0%
AAGAAATTGTGGATAGTAGC+AGG - chr7_2:69477667-69477686 Msa1072410:CDS 35.0%
GAAAACCTATTGAATATGGC+AGG + chr7_2:69477694-69477713 None:intergenic 35.0%
CAATCCTTCATTGGTCATAT+TGG - chr7_2:69477739-69477758 Msa1072410:intron 35.0%
TGAACCAATATGACCAATGA+AGG + chr7_2:69477746-69477765 None:intergenic 35.0%
TATTGCAATTGAGGTAGCAT+CGG + chr7_2:69478037-69478056 None:intergenic 35.0%
GTCTGTCACAAATACAATTG+CGG - chr7_2:69478082-69478101 Msa1072410:intron 35.0%
AGTGCATTAGAAACACTATG+TGG - chr7_2:69478237-69478256 Msa1072410:intron 35.0%
GAGTGTATCTTCAAAGATCA+TGG - chr7_2:69478295-69478314 Msa1072410:intron 35.0%
! AAGTGCCACTAAAATTGGTT+TGG + chr7_2:69478370-69478389 None:intergenic 35.0%
!! AAACCAATTTTAGTGGCACT+TGG - chr7_2:69478369-69478388 Msa1072410:intron 35.0%
GAAAATATTGCACAAGTTGC+TGG - chr7_2:69478399-69478418 Msa1072410:intron 35.0%
!! TTGCTGGAAGCATTTCAATA+TGG - chr7_2:69478415-69478434 Msa1072410:intron 35.0%
TTTGTGCTTGTAGGAACATT+TGG + chr7_2:69478482-69478501 None:intergenic 35.0%
TTGAAATTGAAACTGCTGCA+AGG + chr7_2:69478527-69478546 None:intergenic 35.0%
!! AAGTTCAAGTTTGGCCTTAA+TGG - chr7_2:69478579-69478598 Msa1072410:CDS 35.0%
GCTTATTGGATGCCAAATTT+GGG - chr7_2:69478624-69478643 Msa1072410:intron 35.0%
CTTATTGGATGCCAAATTTG+GGG - chr7_2:69478625-69478644 Msa1072410:intron 35.0%
TGACAAAATGTCCTGATACA+TGG - chr7_2:69478664-69478683 Msa1072410:intron 35.0%
AAAATGTCCTGATACATGGA+AGG - chr7_2:69478668-69478687 Msa1072410:intron 35.0%
AAATGTCCTGATACATGGAA+GGG - chr7_2:69478669-69478688 Msa1072410:intron 35.0%
! ATGGAAGGGTTTCTCATTTT+TGG - chr7_2:69478683-69478702 Msa1072410:intron 35.0%
AACAGGCCAAAGATCTTTAA+AGG + chr7_2:69478709-69478728 None:intergenic 35.0%
!! TATCTTCTGGAGCTATGTTA+TGG - chr7_2:69478742-69478761 Msa1072410:intron 35.0%
!! AGTACTGACAAGAAACTTAG+GGG + chr7_2:69479249-69479268 None:intergenic 35.0%
! AATGGAAAATTTTGCTGCCT+TGG + chr7_2:69479339-69479358 None:intergenic 35.0%
CAAGAATAGCACAAATCCAA+TGG + chr7_2:69479387-69479406 None:intergenic 35.0%
TTGATCTTTCTGTTCCTAAG+AGG - chr7_2:69479404-69479423 Msa1072410:intron 35.0%
! AAATATTTACCAGAGAGCAC+TGG + chr7_2:69479530-69479549 None:intergenic 35.0%
CTTTGCCACCTATAATCTTA+AGG + chr7_2:69479631-69479650 None:intergenic 35.0%
! TTGTGAATAGGTGTTTCTGT+TGG - chr7_2:69479821-69479840 Msa1072410:CDS 35.0%
GTTGTAGCATATGTCAACAT+AGG - chr7_2:69479860-69479879 Msa1072410:CDS 35.0%
ATAGGCTGCTATTACCTAAT+TGG - chr7_2:69479878-69479897 Msa1072410:CDS 35.0%
CTCCAATAGGAATACCAATT+AGG + chr7_2:69479895-69479914 None:intergenic 35.0%
! TGTAAGAGATTAGTCATTGG+TGG + chr7_2:69480092-69480111 None:intergenic 35.0%
ACCAATGACTAATCTCTTAC+AGG - chr7_2:69480091-69480110 Msa1072410:CDS 35.0%
CCAATGACTAATCTCTTACA+GGG - chr7_2:69480092-69480111 Msa1072410:CDS 35.0%
CAATGACTAATCTCTTACAG+GGG - chr7_2:69480093-69480112 Msa1072410:CDS 35.0%
ATCTCATCGACCATATTTAG+TGG - chr7_2:69480116-69480135 Msa1072410:CDS 35.0%
TCTCATCGACCATATTTAGT+GGG - chr7_2:69480117-69480136 Msa1072410:CDS 35.0%
! CCAAAAAGTGTAGTTGAAAG+GGG + chr7_2:69480147-69480166 None:intergenic 35.0%
CACAGACAACTAATATGTGT+TGG - chr7_2:69480203-69480222 Msa1072410:CDS 35.0%
CAGACAACTAATATGTGTTG+GGG - chr7_2:69480205-69480224 Msa1072410:CDS 35.0%
ATCTAACTTACCACCTTTGT+TGG - chr7_2:69480229-69480248 Msa1072410:intron 35.0%
TCTAACTTACCACCTTTGTT+GGG - chr7_2:69480230-69480249 Msa1072410:intron 35.0%
GACTCGTCGATGAAAAAATA+TGG + chr7_2:69480270-69480289 None:intergenic 35.0%
TTACATTGGTCAGGGTAAAT+TGG + chr7_2:69480321-69480340 None:intergenic 35.0%
!! GATATTGTTGGTGCTGAAAT+TGG - chr7_2:69480509-69480528 Msa1072410:intron 35.0%
!!! TGAAATTGGGTCACTTTTGT+AGG - chr7_2:69480523-69480542 Msa1072410:intron 35.0%
!!! GAAATTGGGTCACTTTTGTA+GGG - chr7_2:69480524-69480543 Msa1072410:intron 35.0%
! GTTTGGATTGGAATGTTGTT+TGG - chr7_2:69480548-69480567 Msa1072410:intron 35.0%
!! TGTTAATAAATGGGCTGTAG+TGG - chr7_2:69480750-69480769 Msa1072410:CDS 35.0%
AAATCATATCTAGCCTCTAG+GGG + chr7_2:69480916-69480935 None:intergenic 35.0%
!! AAGGGTTTTGATGCTGCAAA+AGG + chr7_2:69477600-69477619 None:intergenic 40.0%
AAGAAGAGCCACTAAGGAAA+AGG - chr7_2:69477629-69477648 Msa1072410:three_prime_UTR 40.0%
AGAAGAGCCACTAAGGAAAA+GGG - chr7_2:69477630-69477649 Msa1072410:three_prime_UTR 40.0%
GGGAAGAAAGCAAGAAATTG+TGG - chr7_2:69477656-69477675 Msa1072410:CDS 40.0%
GTAGTTGCTCAATCCTTCAT+TGG - chr7_2:69477730-69477749 Msa1072410:intron 40.0%
! AAGGGCATAAGCAGCTAATT+CGG + chr7_2:69477770-69477789 None:intergenic 40.0%
GACTAGGACAGTCATAACAA+GGG + chr7_2:69477788-69477807 None:intergenic 40.0%
TGACTAGGACAGTCATAACA+AGG + chr7_2:69477789-69477808 None:intergenic 40.0%
TTGTTATGACTGTCCTAGTC+AGG - chr7_2:69477788-69477807 Msa1072410:intron 40.0%
TACCATTTGCAAACCTGACT+AGG + chr7_2:69477804-69477823 None:intergenic 40.0%
CAGGTTTGCAAATGGTATTC+TGG - chr7_2:69477807-69477826 Msa1072410:intron 40.0%
ACAAATACAATTGCGGTCGA+TGG - chr7_2:69478089-69478108 Msa1072410:intron 40.0%
ACACTATGTGGACAAGCATA+TGG - chr7_2:69478249-69478268 Msa1072410:intron 40.0%
TGTTCTTGCTTTGTGCTTGT+AGG + chr7_2:69478491-69478510 None:intergenic 40.0%
TGGATGTCATTGCACCATTA+AGG + chr7_2:69478596-69478615 None:intergenic 40.0%
! TGCAATGACATCCATCCTTT+TGG - chr7_2:69478602-69478621 Msa1072410:CDS 40.0%
!!! CATCCATCCTTTTGGCTTAT+TGG - chr7_2:69478610-69478629 Msa1072410:CDS 40.0%
CATCCAATAAGCCAAAAGGA+TGG + chr7_2:69478616-69478635 None:intergenic 40.0%
TTGGCATCCAATAAGCCAAA+AGG + chr7_2:69478620-69478639 None:intergenic 40.0%
GGCTTATTGGATGCCAAATT+TGG - chr7_2:69478623-69478642 Msa1072410:intron 40.0%
AAAACAAGCTGCCCCAAATT+TGG + chr7_2:69478639-69478658 None:intergenic 40.0%
GATTCTTCTAACAGGGAACA+TGG - chr7_2:69478903-69478922 Msa1072410:intron 40.0%
!! CCATATAGCAAGAGCATCAA+TGG + chr7_2:69478944-69478963 None:intergenic 40.0%
! CCATTGATGCTCTTGCTATA+TGG - chr7_2:69478941-69478960 Msa1072410:CDS 40.0%
! TTTTGCAGCCTCAACATCAA+TGG - chr7_2:69479065-69479084 Msa1072410:CDS 40.0%
TTTGCAGCCTCAACATCAAT+GGG - chr7_2:69479066-69479085 Msa1072410:CDS 40.0%
! GTACTGACAAGAAACTTAGG+GGG + chr7_2:69479248-69479267 None:intergenic 40.0%
TGTCGAATGAACTAGGAAGA+GGG - chr7_2:69479309-69479328 Msa1072410:intron 40.0%
! TGTGAGCACTGTTATCACAA+TGG + chr7_2:69479357-69479376 None:intergenic 40.0%
TGTAAGCAAGTCTTCCTCTT+AGG + chr7_2:69479421-69479440 None:intergenic 40.0%
ATTAGCCACATCTGGATTTG+GGG + chr7_2:69479450-69479469 None:intergenic 40.0%
CATTAGCCACATCTGGATTT+GGG + chr7_2:69479451-69479470 None:intergenic 40.0%
ATTTGGATTCTCTGCCGTAA+CGG + chr7_2:69479785-69479804 None:intergenic 40.0%
ATTCCTATTGGAGTTGTGCT+TGG - chr7_2:69479902-69479921 Msa1072410:CDS 40.0%
TTACCAAGCACAACTCCAAT+AGG + chr7_2:69479908-69479927 None:intergenic 40.0%
TCGCACTAATACGATGGTTA+CGG + chr7_2:69480064-69480083 None:intergenic 40.0%
GATGTTTCGCACTAATACGA+TGG + chr7_2:69480070-69480089 None:intergenic 40.0%
! CCCTGTAAGAGATTAGTCAT+TGG + chr7_2:69480095-69480114 None:intergenic 40.0%
! CCCCTTTCAACTACACTTTT+TGG - chr7_2:69480144-69480163 Msa1072410:CDS 40.0%
CTAACTTACCACCTTTGTTG+GGG - chr7_2:69480231-69480250 Msa1072410:intron 40.0%
TGGTCAGGGTAAATTGGATT+TGG + chr7_2:69480315-69480334 None:intergenic 40.0%
!! CTTTTGTAGGGTGTTTGGAT+TGG - chr7_2:69480536-69480555 Msa1072410:intron 40.0%
TCTAGTCAAAATACCCCTAG+AGG - chr7_2:69480900-69480919 Msa1072410:five_prime_UTR 40.0%
CAGCTCCATAGTAGAAGAAG+TGG - chr7_2:69477546-69477565 Msa1072410:three_prime_UTR 45.0%
AGCCACTAAGGAAAAGGGTA+TGG - chr7_2:69477635-69477654 Msa1072410:exon 45.0%
! GCCACTAAGGAAAAGGGTAT+GGG - chr7_2:69477636-69477655 Msa1072410:exon 45.0%
! TCCCATACCCTTTTCCTTAG+TGG + chr7_2:69477640-69477659 None:intergenic 45.0%
GTCCTAGTCAGGTTTGCAAA+TGG - chr7_2:69477799-69477818 Msa1072410:intron 45.0%
! TGGCCAAGTGCCACTAAAAT+TGG + chr7_2:69478375-69478394 None:intergenic 45.0%
GAGAAACCCTTCCATGTATC+AGG + chr7_2:69478678-69478697 None:intergenic 45.0%
TTTCCCACCCATTGATGTTG+AGG + chr7_2:69479076-69479095 None:intergenic 45.0%
AGCTGCAGCAAAGAAACCAA+GGG + chr7_2:69479108-69479127 None:intergenic 45.0%
TAGCTGCAGCAAAGAAACCA+AGG + chr7_2:69479109-69479128 None:intergenic 45.0%
TTGGTTTCTTTGCTGCAGCT+AGG - chr7_2:69479108-69479127 Msa1072410:CDS 45.0%
!! GTTAGGGTGTCGAATGAACT+AGG - chr7_2:69479302-69479321 Msa1072410:intron 45.0%
GTGTCGAATGAACTAGGAAG+AGG - chr7_2:69479308-69479327 Msa1072410:intron 45.0%
GTGCTCACATCATTTGCCAT+TGG - chr7_2:69479368-69479387 Msa1072410:CDS 45.0%
TTTCACCCCAAATCCAGATG+TGG - chr7_2:69479442-69479461 Msa1072410:intron 45.0%
GCATTAGCCACATCTGGATT+TGG + chr7_2:69479452-69479471 None:intergenic 45.0%
!! ATTTACCAGAGAGCACTGGT+TGG + chr7_2:69479526-69479545 None:intergenic 45.0%
! ATAGGTGTTTCTGTTGGAGC+TGG - chr7_2:69479827-69479846 Msa1072410:CDS 45.0%
AGGGGAGATCCCACTAAATA+TGG + chr7_2:69480129-69480148 None:intergenic 45.0%
!!! GGTCACTTTTGTAGGGTGTT+TGG - chr7_2:69480531-69480550 Msa1072410:intron 45.0%
GCAGCATCAAAACCCTTCAG+AGG - chr7_2:69477603-69477622 Msa1072410:three_prime_UTR 50.0%
GCATCAAAACCCTTCAGAGG+AGG - chr7_2:69477606-69477625 Msa1072410:three_prime_UTR 50.0%
GCTCTTCTTCCTCCTCTGAA+GGG + chr7_2:69477618-69477637 None:intergenic 50.0%
AGGAGGAAGAAGAGCCACTA+AGG - chr7_2:69477623-69477642 Msa1072410:three_prime_UTR 50.0%
CAGGCCCTGCCATATTCAAT+AGG - chr7_2:69477686-69477705 Msa1072410:CDS 50.0%
TTGCGATCGAGTGCAGTGTA+TGG - chr7_2:69477966-69477985 Msa1072410:intron 50.0%
CAGCCTCAACATCAATGGGT+GGG - chr7_2:69479070-69479089 Msa1072410:CDS 50.0%
TGGGAAATGATGACAGCCCT+TGG - chr7_2:69479089-69479108 Msa1072410:CDS 50.0%
CTGACAAGAAACTTAGGGGG+TGG + chr7_2:69479245-69479264 None:intergenic 50.0%
ACTAGGAAGAGGGAGTTCCA+AGG - chr7_2:69479319-69479338 Msa1072410:intron 50.0%
CCAACTGCATTAGCCACATC+TGG + chr7_2:69479458-69479477 None:intergenic 50.0%
CCAGATGTGGCTAATGCAGT+TGG - chr7_2:69479455-69479474 Msa1072410:intron 50.0%
TAACGGCGAGACGGTCTATT+TGG + chr7_2:69479768-69479787 None:intergenic 50.0%
AATAGACCGTCTCGCCGTTA+CGG - chr7_2:69479768-69479787 Msa1072410:CDS 50.0%
GATAGGAGAGACCCCAACAA+AGG + chr7_2:69480245-69480264 None:intergenic 50.0%
TAAGACTGACTGGGACAAGC+AGG - chr7_2:69480610-69480629 Msa1072410:intron 50.0%
GGCTCTTCTTCCTCCTCTGA+AGG + chr7_2:69477619-69477638 None:intergenic 55.0%
GCAGCCTCAACATCAATGGG+TGG - chr7_2:69479069-69479088 Msa1072410:CDS 55.0%
AGTGTCCAACCAGTGCTCTC+TGG - chr7_2:69479518-69479537 Msa1072410:CDS 55.0%
! GTGTTTCTGTTGGAGCTGGC+TGG - chr7_2:69479831-69479850 Msa1072410:CDS 55.0%
AGGAGAGACCCCAACAAAGG+TGG + chr7_2:69480242-69480261 None:intergenic 55.0%
TCTCTGCCGTAACGGCGAGA+CGG + chr7_2:69479777-69479796 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69477461 69481002 69477461 ID=Msa1072410;Name=Msa1072410
chr7_2 mRNA 69477461 69481002 69477461 ID=Msa1072410-mRNA-1;Parent=Msa1072410;Name=Msa1072410-mRNA-1;_AED=0.13;_eAED=0.13;_QI=110|1|1|1|1|1|8|189|489
chr7_2 exon 69477461 69477733 69477461 ID=Msa1072410-mRNA-1:exon:15443;Parent=Msa1072410-mRNA-1
chr7_2 exon 69477832 69477918 69477832 ID=Msa1072410-mRNA-1:exon:15442;Parent=Msa1072410-mRNA-1
chr7_2 exon 69478514 69478632 69478514 ID=Msa1072410-mRNA-1:exon:15441;Parent=Msa1072410-mRNA-1
chr7_2 exon 69478924 69479162 69478924 ID=Msa1072410-mRNA-1:exon:15440;Parent=Msa1072410-mRNA-1
chr7_2 exon 69479334 69479390 69479334 ID=Msa1072410-mRNA-1:exon:15439;Parent=Msa1072410-mRNA-1
chr7_2 exon 69479501 69479587 69479501 ID=Msa1072410-mRNA-1:exon:15438;Parent=Msa1072410-mRNA-1
chr7_2 exon 69479700 69480238 69479700 ID=Msa1072410-mRNA-1:exon:15437;Parent=Msa1072410-mRNA-1
chr7_2 exon 69480635 69481002 69480635 ID=Msa1072410-mRNA-1:exon:15436;Parent=Msa1072410-mRNA-1
chr7_2 five_prime_UTR 69480893 69481002 69480893 ID=Msa1072410-mRNA-1:five_prime_utr;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69480635 69480892 69480635 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69479700 69480238 69479700 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69479501 69479587 69479501 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69479334 69479390 69479334 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69478924 69479162 69478924 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69478514 69478632 69478514 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69477832 69477918 69477832 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 CDS 69477650 69477733 69477650 ID=Msa1072410-mRNA-1:cds;Parent=Msa1072410-mRNA-1
chr7_2 three_prime_UTR 69477461 69477649 69477461 ID=Msa1072410-mRNA-1:three_prime_utr;Parent=Msa1072410-mRNA-1
Gene Sequence

>Msa1072410

ATGGGATCAGAAGAGATAAACAAGAACCTTTTGCAGCATCAAAACCCTTCAGAGGAGGAAGAAGAGCCACTAAGGAAAAGGGTATGGGAAGAAAGCAAGAAATTGTGGATAGTAGCAGGCCCTGCCATATTCAATAGGTTTTCAACATTTGGTATCATGGTAGTTGCTCAATCCTTCATTGGTCATATTGGTTCAACCGAATTAGCTGCTTATGCCCTTGTTATGACTGTCCTAGTCAGGTTTGCAAATGGTATTCTGTTGGGTATGGCAAGTGCATTAGAAACACTATGTGGACAAGCATATGGAGCAAAACAATATGATATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTTATATTCTTAACCTCAATTCTTCTTCTTCCAATTTACATTTTTACCAAACCAATTTTAGTGGCACTTGGCCAAGATGAAAATATTGCACAAGTTGCTGGAAGCATTTCAATATGGTCAATAGGTATAGTATTTGCTTTCTCTGCATCATTCACTTGCCAAATGTTCCTACAAGCACAAAGCAAGAACAAGATTATTGCTTACCTTGCAGCAGTTTCAATTTCAATACATGTTTTTATGTCATGGCTTTTAACTGTTAAGTTCAAGTTTGGCCTTAATGGTGCAATGACATCCATCCTTTTGGCTTATTGGATGCCAAATTTGGGGCAGCTTGTTTTTATCATGACAAAATGTCCTGATACATGGAAGGGTTTCTCATTTTTGGCCTTTAAAGATCTTTGGCCTGTTATCAAGCTTTCTTTATCTTCTGGAGCTATGTTATGTCTTGAAATATGGTACAACACAGTTTTGATTCTTCTAACAGGGAACATGGAAAATGCTGAGATTTCCATTGATGCTCTTGCTATATGCCTCAACATCAATGGGTGGGAAATGATGACAGCCCTTGGTTTCTTTGCTGCAGCTAGTGTTAGGGTGTCGAATGAACTAGGAAGAGGGAGTTCCAAGGCAGCAAAATTTTCCATTGTGATAACAGTGCTCACATCATTTGCCATTGGATTTGTGCTATTCTTGATCTTTCTGTTCCTAAGAGGAAGACTTGCTTACATTTTCACCCCAAATCCAGATGTGGCTAATGCAGTTGGAGATCTATCACCTTTGTTATCATTCTCCATATTAATGAACAGTGTCCAACCAGTGCTCTCTGGTGTTTCTGTTGGAGCTGGCTGGCAAAGTGTTGTAGCATATGTCAACATAGGCTGCTATTACCTAATTGGTATTCCTATTGGAGTTGTGCTTGGTAATATTCTCCATTTGCAAGTTAAGGGTGTTTGGATTGGAATGTTGTTTGGAACTTTTGTTCAAACCATAATGCTTATGATAATCACATTTAAGACTGACTGGGACAAGCAGGTTGAGATTGCCAGAAATCGTGTTAATAAATGGGCTGTAGTGGAGAATGATGAATCAAACAACACATCAAGGATATCCAACTAA
Protein sequence

>Msa1072410

MGSEEINKNLLQHQNPSEEEEEPLRKRVWEESKKLWIVAGPAIFNRFSTFGIMVVAQSFIGHIGSTELAAYALVMTVLVRFANGILLGMASALETLCGQAYGAKQYDMLGVYLQRSWIVIFLTSILLLPIYIFTKPILVALGQDENIAQVAGSISIWSIGIVFAFSASFTCQMFLQAQSKNKIIAYLAAVSISIHVFMSWLLTVKFKFGLNGAMTSILLAYWMPNLGQLVFIMTKCPDTWKGFSFLAFKDLWPVIKLSLSSGAMLCLEIWYNTVLILLTGNMENAEISIDALAICLNINGWEMMTALGFFAAASVRVSNELGRGSSKAAKFSIVITVLTSFAIGFVLFLIFLFLRGRLAYIFTPNPDVANAVGDLSPLLSFSILMNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPIGVVLGNILHLQVKGVWIGMLFGTFVQTIMLMIITFKTDWDKQVEIARNRVNKWAVVENDESNNTSRISN*