AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032430 MtrunA17_Chr7g0254511 97.727 484 11 0 1 484 1 484 0.0 959
Msa1032430 MtrunA17_Chr7g0254521 70.287 488 142 2 3 487 2 489 0.0 708
Msa1032430 MtrunA17_Chr6g0460541 75.802 405 96 1 87 489 3 407 0.0 626
Msa1032430 MtrunA17_Chr7g0254531 73.367 398 105 1 89 485 1 398 0.0 589
Msa1032430 MtrunA17_Chr7g0254501 90.852 317 29 0 173 489 1 317 0.0 560
Msa1032430 MtrunA17_Chr5g0412541 49.795 488 237 3 1 480 1 488 1.95e-168 484
Msa1032430 MtrunA17_Chr3g0132531 49.364 472 236 3 12 481 29 499 4.14e-161 466
Msa1032430 MtrunA17_Chr8g0368001 45.633 458 248 1 30 486 50 507 1.89e-149 436
Msa1032430 MtrunA17_Chr1g0202761 45.905 464 248 2 25 486 38 500 2.51e-146 428
Msa1032430 MtrunA17_Chr5g0412771 47.046 457 237 2 31 482 57 513 1.67e-142 419
Msa1032430 MtrunA17_Chr4g0024501 45.570 474 246 3 12 473 36 509 6.90e-141 415
Msa1032430 MtrunA17_Chr2g0322671 45.570 474 246 3 12 473 24 497 3.99e-137 405
Msa1032430 MtrunA17_Chr6g0460531 70.076 264 71 2 3 265 4 260 1.26e-132 384
Msa1032430 MtrunA17_Chr5g0412571 47.859 397 205 2 87 481 38 434 8.80e-131 386
Msa1032430 MtrunA17_Chr1g0154441 48.320 387 199 1 89 474 1 387 1.06e-128 379
Msa1032430 MtrunA17_Chr2g0288281 47.804 387 200 1 89 473 1 387 2.00e-128 378
Msa1032430 MtrunA17_Chr7g0248051 44.789 451 249 0 22 472 62 512 3.16e-127 380
Msa1032430 MtrunA17_Chr6g0468531 38.958 480 281 4 10 479 5 482 3.39e-116 350
Msa1032430 MtrunA17_Chr6g0468521 38.852 453 276 1 22 474 23 474 1.56e-114 346
Msa1032430 MtrunA17_Chr5g0442331 41.328 467 265 3 20 479 31 495 1.32e-111 339
Msa1032430 MtrunA17_Chr3g0132541 40.084 474 210 8 3 464 10 421 1.75e-105 321
Msa1032430 MtrunA17_Chr6g0468511 37.168 452 283 1 22 473 23 473 1.90e-104 320
Msa1032430 MtrunA17_Chr6g0460521 74.208 221 57 0 264 484 1 221 7.26e-99 297
Msa1032430 MtrunA17_Chr6g0483361 34.894 470 300 4 5 470 2 469 1.58e-90 284
Msa1032430 MtrunA17_Chr6g0483381 34.624 465 299 3 10 470 8 471 4.82e-89 280
Msa1032430 MtrunA17_Chr7g0251331 35.611 483 308 2 6 486 3 484 3.13e-88 278
Msa1032430 MtrunA17_Chr1g0208791 33.917 457 294 4 12 462 23 477 2.33e-85 271
Msa1032430 MtrunA17_Chr6g0477961 36.117 443 276 4 33 470 31 471 1.14e-84 269
Msa1032430 MtrunA17_Chr6g0483331 34.130 460 294 6 25 478 7 463 2.16e-83 265
Msa1032430 MtrunA17_Chr6g0483341 33.049 469 301 7 14 472 21 486 3.03e-82 263
Msa1032430 MtrunA17_Chr2g0317131 37.174 460 275 3 13 461 20 476 3.79e-82 263
Msa1032430 MtrunA17_Chr6g0483351 36.483 381 238 2 89 465 1 381 2.19e-79 254
Msa1032430 MtrunA17_Chr2g0317171 36.659 461 274 5 14 461 15 470 8.06e-79 254
Msa1032430 MtrunA17_Chr8g0392601 32.667 450 290 4 30 472 13 456 1.69e-78 253
Msa1032430 MtrunA17_Chr1g0208821 33.610 482 302 6 1 470 8 483 3.48e-78 253
Msa1032430 MtrunA17_Chr2g0317161 36.623 456 275 4 17 461 12 464 6.92e-78 251
Msa1032430 MtrunA17_Chr2g0317151 37.986 437 263 2 30 461 33 466 2.42e-77 250
Msa1032430 MtrunA17_Chr6g0449061 31.677 483 319 5 3 479 5 482 2.27e-75 245
Msa1032430 MtrunA17_Chr2g0317221 39.895 381 221 3 86 461 7 384 6.67e-74 239
Msa1032430 MtrunA17_Chr1g0208881 32.548 467 313 1 6 470 1 467 7.69e-74 241
Msa1032430 MtrunA17_Chr7g0254491 93.103 116 8 0 1 116 1 116 1.18e-73 228
Msa1032430 MtrunA17_Chr1g0208891 33.546 471 302 3 6 470 1 466 5.42e-72 236
Msa1032430 MtrunA17_Chr6g0483161 32.368 380 236 2 87 464 1 361 7.16e-67 219
Msa1032430 MtrunA17_Chr3g0140931 28.602 465 314 5 14 468 35 491 2.03e-62 213
Msa1032430 MtrunA17_Chr7g0251321 31.646 395 249 2 89 481 1 376 2.23e-61 205
Msa1032430 MtrunA17_Chr5g0397991 27.416 445 313 4 30 468 65 505 6.86e-52 184
Msa1032430 MtrunA17_Chr5g0428251 25.470 479 346 4 7 479 32 505 9.08e-52 184
Msa1032430 MtrunA17_Chr1g0203791 27.155 464 322 4 14 468 48 504 2.86e-51 182
Msa1032430 MtrunA17_Chr5g0440661 30.311 386 194 6 89 472 1 313 1.87e-49 172
Msa1032430 MtrunA17_Chr8g0364761 33.993 303 186 4 7 296 21 322 3.05e-49 171
Msa1032430 MtrunA17_Chr6g0467321 25.941 505 345 6 3 483 7 506 5.52e-49 176
Msa1032430 MtrunA17_Chr6g0473701 26.840 462 324 5 27 480 125 580 4.72e-48 175
Msa1032430 MtrunA17_Chr4g0013031 24.946 461 338 3 27 479 63 523 7.85e-46 167
Msa1032430 MtrunA17_Chr8g0364751 47.701 174 91 0 301 474 6 179 1.66e-43 152
Msa1032430 MtrunA17_Chr8g0389801 27.009 448 293 8 30 460 23 453 3.38e-39 148
Msa1032430 MtrunA17_Chr6g0483264 34.314 204 134 0 267 470 1 204 1.81e-33 126
Msa1032430 MtrunA17_Chr2g0295631 22.989 435 309 4 60 472 50 480 4.04e-30 123
Msa1032430 MtrunA17_Chr6g0483221 34.416 154 101 0 310 463 2 155 1.80e-28 111
Msa1032430 MtrunA17_Chr6g0483241 38.798 183 106 4 87 265 1 181 1.94e-28 111
Msa1032430 MtrunA17_Chr6g0460551 63.529 85 27 2 6 86 9 93 3.47e-26 102
Msa1032430 MtrunA17_Chr5g0442311 34.637 179 115 1 89 265 1 179 1.37e-23 97.8
Msa1032430 MtrunA17_Chr6g0483261 34.161 161 106 0 310 470 2 162 4.80e-23 96.3
Msa1032430 MtrunA17_Chr6g0487091 24.934 377 257 5 123 486 39 402 6.22e-22 97.8
Msa1032430 MtrunA17_Chr5g0398571 28.972 214 152 0 254 467 73 286 8.06e-19 87.4
Msa1032430 MtrunA17_Chr5g0412561 49.315 73 37 0 14 86 20 92 2.52e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032430 AT1G33110.1 65.984 488 162 3 2 485 4 491 0.0 671
Msa1032430 AT1G33100.1 63.900 482 173 1 5 485 7 488 0.0 656
Msa1032430 AT1G33090.1 62.887 485 176 3 5 485 7 491 0.0 631
Msa1032430 AT1G33080.1 62.190 484 179 2 5 484 7 490 0.0 624
Msa1032430 AT1G33080.2 63.715 463 164 2 5 463 7 469 0.0 610
Msa1032430 AT1G33110.2 67.000 400 128 3 2 397 4 403 0.0 551
Msa1032430 AT5G65380.1 50.316 475 233 3 2 474 9 482 1.61e-164 474
Msa1032430 AT5G44050.1 49.372 478 236 3 4 477 13 488 2.28e-164 474
Msa1032430 AT1G47530.1 46.250 480 251 3 1 474 1 479 5.47e-151 440
Msa1032430 AT4G00350.1 46.847 444 236 0 31 474 88 531 1.08e-149 438
Msa1032430 AT5G10420.1 47.303 482 247 5 4 482 12 489 7.23e-149 434
Msa1032430 AT1G12950.1 47.020 453 239 1 31 482 67 519 2.23e-143 422
Msa1032430 AT3G26590.1 47.072 444 234 1 31 473 45 488 5.07e-143 420
Msa1032430 AT3G03620.2 44.043 470 262 1 15 483 21 490 2.29e-140 413
Msa1032430 AT3G03620.1 44.043 470 262 1 15 483 21 490 2.29e-140 413
Msa1032430 AT4G25640.1 46.138 479 252 2 10 482 7 485 3.43e-140 412
Msa1032430 AT1G11670.1 44.534 494 253 4 1 473 1 494 4.63e-140 412
Msa1032430 AT4G25640.2 46.138 479 252 2 10 482 7 485 1.30e-139 412
Msa1032430 AT1G61890.1 45.119 461 247 2 19 473 31 491 4.15e-139 410
Msa1032430 AT5G17700.2 42.647 476 271 2 2 475 4 479 4.28e-138 407
Msa1032430 AT5G17700.1 42.647 476 271 2 2 475 4 479 4.28e-138 407
Msa1032430 AT5G38030.1 45.154 454 248 1 31 483 45 498 5.73e-138 407
Msa1032430 AT1G23300.1 45.752 459 244 2 31 488 44 498 1.09e-137 407
Msa1032430 AT3G21690.1 46.358 453 241 1 24 474 45 497 6.39e-136 402
Msa1032430 AT1G61890.2 44.017 468 254 3 5 464 15 482 2.38e-134 397
Msa1032430 AT1G47530.2 48.705 386 197 1 89 473 1 386 1.12e-130 384
Msa1032430 AT4G25640.3 46.853 429 222 2 10 432 7 435 6.22e-127 377
Msa1032430 AT3G26590.2 47.668 386 201 1 89 473 1 386 1.57e-125 372
Msa1032430 AT4G21910.2 41.866 461 261 3 19 473 41 500 6.01e-125 374
Msa1032430 AT4G21910.4 41.866 461 261 3 19 473 41 500 6.01e-125 374
Msa1032430 AT4G21910.3 40.748 481 262 4 15 473 19 498 9.29e-125 374
Msa1032430 AT4G21910.1 40.748 481 262 4 15 473 19 498 9.29e-125 374
Msa1032430 AT4G21903.1 43.897 426 234 4 51 473 73 496 7.47e-122 366
Msa1032430 AT4G21903.2 42.601 446 244 6 51 489 73 513 8.55e-119 358
Msa1032430 AT1G61890.3 43.721 430 236 2 19 442 31 460 2.86e-118 356
Msa1032430 AT3G59030.1 40.119 506 278 5 1 483 1 504 2.43e-117 354
Msa1032430 AT4G21903.3 44.588 388 211 3 89 473 1 387 1.42e-115 346
Msa1032430 AT5G17700.3 42.211 398 228 2 2 397 4 401 7.15e-110 332
Msa1032430 AT5G52450.1 35.054 465 296 2 25 485 20 482 3.15e-88 279
Msa1032430 AT2G34360.1 34.461 473 292 6 20 485 16 477 1.02e-85 272
Msa1032430 AT3G59030.2 37.890 417 235 4 1 394 1 416 3.62e-84 266
Msa1032430 AT1G73700.1 35.484 465 292 5 20 479 13 474 2.31e-82 263
Msa1032430 AT1G71140.1 33.696 460 295 3 17 470 12 467 5.54e-80 257
Msa1032430 AT1G66760.2 32.075 477 311 4 10 480 10 479 2.43e-75 245
Msa1032430 AT2G34360.2 31.513 476 268 4 16 485 12 435 7.63e-75 243
Msa1032430 AT1G15150.1 33.917 457 287 6 31 480 31 479 7.37e-74 241
Msa1032430 AT1G66760.1 32.391 460 298 4 10 463 10 462 7.54e-73 238
Msa1032430 AT1G15160.1 31.470 483 307 7 14 480 5 479 6.35e-72 236
Msa1032430 AT1G66780.1 34.507 426 275 2 48 470 52 476 9.52e-72 236
Msa1032430 AT2G04080.1 32.981 473 295 9 14 470 2 468 3.00e-71 234
Msa1032430 AT1G15170.1 33.195 482 303 8 1 470 1 475 1.08e-70 233
Msa1032430 AT2G04040.1 33.036 448 286 7 31 470 27 468 1.12e-68 228
Msa1032430 AT2G04080.2 32.623 469 294 9 14 466 2 464 1.21e-68 227
Msa1032430 AT2G04070.1 32.328 464 303 5 16 470 7 468 1.45e-68 227
Msa1032430 AT3G23560.1 32.819 454 294 2 19 461 18 471 1.28e-67 224
Msa1032430 AT2G04050.1 32.479 468 304 5 10 470 6 468 6.81e-67 223
Msa1032430 AT1G64820.1 30.717 446 301 4 30 470 28 470 1.07e-66 223
Msa1032430 AT3G23550.1 33.028 436 286 3 30 461 30 463 1.01e-65 219
Msa1032430 AT2G04100.1 31.416 452 300 4 25 470 24 471 3.53e-63 213
Msa1032430 AT1G15180.1 33.110 447 287 6 31 470 35 476 1.09e-62 212
Msa1032430 AT2G04090.1 31.333 450 291 6 31 470 30 471 5.10e-62 210
Msa1032430 AT2G04100.2 31.544 447 296 4 25 465 24 466 1.07e-61 209
Msa1032430 AT1G15150.2 34.511 368 229 5 120 480 1 363 4.44e-60 202
Msa1032430 AT1G15170.2 33.799 358 228 4 120 470 1 356 5.06e-58 196
Msa1032430 AT2G38510.1 24.675 462 341 3 27 483 2 461 1.12e-49 177
Msa1032430 AT1G66760.3 31.737 334 226 1 132 463 1 334 2.17e-49 172
Msa1032430 AT1G66760.4 30.179 391 260 4 10 394 10 393 1.39e-48 172
Msa1032430 AT3G23560.2 31.525 387 254 2 19 394 18 404 6.54e-47 168
Msa1032430 AT1G58340.1 24.499 449 329 3 30 472 57 501 2.27e-46 169
Msa1032430 AT4G29140.1 24.949 489 345 6 1 479 29 505 5.68e-41 154
Msa1032430 AT1G71870.1 23.810 504 344 9 7 483 7 497 1.60e-40 152
Msa1032430 AT5G19700.1 25.581 473 332 5 6 468 13 475 5.63e-40 151
Msa1032430 AT5G52050.1 24.658 438 288 6 55 467 59 479 1.40e-34 136
Msa1032430 AT4G23030.1 24.431 483 353 5 8 483 10 487 1.71e-32 130
Msa1032430 AT5G49130.1 25.462 487 335 8 11 478 12 489 3.12e-32 129
Msa1032430 AT1G15180.2 31.206 282 185 5 120 394 1 280 1.18e-28 117
Msa1032430 AT4G22790.1 25.219 456 307 11 50 489 49 486 1.63e-27 115
Msa1032430 AT2G04066.1 38.400 125 76 1 347 470 39 163 4.35e-24 99.4

Find 115 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATTGGATGCCAAATT+TGG 0.098899 7_1:+67332808 Msa1032430:CDS
CATTTCCACTTCTTCTACTA+TGG 0.160377 7_1:-67331762 None:intergenic
CTAGAAATCGTGTTAATAAA+TGG 0.175287 7_1:+67335055 Msa1032430:CDS
TGGCCAAGTGCCACTAAAAT+TGG 0.210821 7_1:-67332557 None:intergenic
CATTTGCCACATCTGGATTT+GGG 0.227220 7_1:-67333525 None:intergenic
ATCAAGCTTTCTTTATCTTC+TGG 0.246424 7_1:+67332914 Msa1032430:CDS
AAAATAAGCTGGCCCAAATT+TGG 0.247332 7_1:-67332821 None:intergenic
TGTGATTATCATAAGCATTA+TGG 0.251121 7_1:-67334900 None:intergenic
GCATTTGCCACATCTGGATT+TGG 0.252616 7_1:-67333526 None:intergenic
CCATTGATGCTCTTGCTATA+TGG 0.272797 7_1:+67333126 Msa1032430:CDS
AAGTTCAAGTTTGGCCTTAA+TGG 0.279298 7_1:+67332764 Msa1032430:CDS
TGTTCTTGCTTTGTGCTTGT+AGG 0.291347 7_1:-67332673 None:intergenic
CAATCCTTCATTGGTCATAT+TGG 0.293119 7_1:+67331950 Msa1032430:CDS
CAGGTTTGCAAATGGTATTC+TGG 0.301200 7_1:+67332018 Msa1032430:CDS
TGTTGAAAACCTATTGAATA+TGG 0.301753 7_1:-67331906 None:intergenic
ATAGGCTGCTATTACCTAAT+TGG 0.305303 7_1:+67333927 Msa1032430:CDS
TTGATGTCATTGCACCATTA+AGG 0.308624 7_1:-67332778 None:intergenic
AACAGGCCAAAGATCTTTAA+AGG 0.330427 7_1:-67332891 None:intergenic
TGCAATGACATCAATCCTTT+TGG 0.332957 7_1:+67332787 Msa1032430:CDS
GAAAATATTGCACAAGTTGC+TGG 0.335153 7_1:+67332584 Msa1032430:CDS
CCAACTGCATTTGCCACATC+TGG 0.335474 7_1:-67333532 None:intergenic
TGTAAGCAAGTCTTCCTCTT+AGG 0.344861 7_1:-67333495 None:intergenic
GAGAAACCCTTCCATGTATC+AGG 0.346664 7_1:-67332860 None:intergenic
GTTTGGATTGGAATGTTGTT+TGG 0.348970 7_1:+67334863 Msa1032430:CDS
TATCTTCTGGAGCTATGTTA+TGG 0.352221 7_1:+67332927 Msa1032430:CDS
TCTTCTTCATTTGCAAGTTA+AGG 0.355036 7_1:+67333977 Msa1032430:CDS
TCTTGATATTCTTCTTTAGT+TGG 0.358461 7_1:-67335121 None:intergenic
TTAACTGTGAAGTTCAAGTT+TGG 0.371162 7_1:+67332755 Msa1032430:CDS
TTGGACACTGTTCATCAATA+TGG 0.379365 7_1:-67333581 None:intergenic
TCAGTGAAGAAAGTCTAATA+AGG 0.387668 7_1:+67335155 Msa1032430:three_prime_UTR
CATAGTAGAAGAAGTGGAAA+TGG 0.391136 7_1:+67331763 Msa1032430:exon
GATAAAGAAAGCTTGATAAC+AGG 0.397818 7_1:-67332908 None:intergenic
TTGTTATGACTGTCCTAGTC+AGG 0.399000 7_1:+67331999 Msa1032430:CDS
CAGGCCCTGCCATATTCAAT+AGG 0.402161 7_1:+67331897 Msa1032430:CDS
GCTTATTGGATGCCAAATTT+GGG 0.405071 7_1:+67332809 Msa1032430:CDS
GGCTCTTCTTCCTCCTCTGA+AGG 0.408718 7_1:-67331827 None:intergenic
CCATATAGCAAGAGCATCAA+TGG 0.415111 7_1:-67333126 None:intergenic
CTCCGATAGGAATACCAATT+AGG 0.416553 7_1:-67333941 None:intergenic
TTTGTGCTTGTAGGAACATT+TGG 0.420861 7_1:-67332664 None:intergenic
TTGAAAATTGTAGTTGGGTA+TGG 0.421860 7_1:+67332397 Msa1032430:intron
AAGGGCATAAGCAGCTAATT+CGG 0.440329 7_1:-67331978 None:intergenic
GTAGTTGCTCAATCCTTCAT+TGG 0.440406 7_1:+67331941 Msa1032430:CDS
TAAAATCATATCTAGCCTCT+AGG 0.443706 7_1:-67335228 None:intergenic
AAGAAGAGCCACTAAGGAAA+AGG 0.447419 7_1:+67331840 Msa1032430:CDS
TTGCTGGAAGCATTTCAATA+TGG 0.449250 7_1:+67332600 Msa1032430:CDS
TAGAAATCGTGTTAATAAAT+GGG 0.454565 7_1:+67335056 Msa1032430:CDS
AGCATTTCAATATGGTCAAT+AGG 0.456375 7_1:+67332608 Msa1032430:CDS
TTTGCAGCCTCAACATCAAT+GGG 0.465185 7_1:+67333236 Msa1032430:intron
ACACTATGTGGACAAGCATA+TGG 0.467239 7_1:+67332434 Msa1032430:CDS
ATAGGTGTTTCTGTTGGAGC+TGG 0.468391 7_1:+67333876 Msa1032430:intron
GAAAACCTATTGAATATGGC+AGG 0.470460 7_1:-67331902 None:intergenic
GCTCTTCTTCCTCCTCTGAA+GGG 0.476165 7_1:-67331826 None:intergenic
TTGATCTTTCTGTTCCTAAG+AGG 0.477472 7_1:+67333481 Msa1032430:CDS
AAGTGCCACTAAAATTGGTT+TGG 0.478153 7_1:-67332552 None:intergenic
GAGTGTATCTTCAAAGATCA+TGG 0.479506 7_1:+67332480 Msa1032430:CDS
GTGTTTCTGTTGGAGCTGGC+TGG 0.479528 7_1:+67333880 Msa1032430:CDS
AGCCACTAAGGAAAAGGGTA+TGG 0.482191 7_1:+67331846 Msa1032430:CDS
AAAATCATATCTAGCCTCTA+GGG 0.484679 7_1:-67335227 None:intergenic
AGTGTCCAACCTGTGCTCTC+TGG 0.488293 7_1:+67333595 Msa1032430:CDS
TTGGCATCCAATAAGCCAAA+AGG 0.492999 7_1:-67332802 None:intergenic
TAATCACATTTAAGACTGAC+TGG 0.493785 7_1:+67334915 Msa1032430:CDS
GCAAAACAATATGATATGCT+TGG 0.495199 7_1:+67332458 Msa1032430:CDS
AGGAGGAAGAAGAGCCACTA+AGG 0.500928 7_1:+67331834 Msa1032430:CDS
TACCTAATTGGTATTCCTAT+CGG 0.507862 7_1:+67333939 Msa1032430:CDS
AGAAGAGCCACTAAGGAAAA+GGG 0.507893 7_1:+67331841 Msa1032430:CDS
TGAACCAATATGACCAATGA+AGG 0.509207 7_1:-67331954 None:intergenic
AAGAAGCTGTGGATAGTAGC+AGG 0.510220 7_1:+67331878 Msa1032430:CDS
TTGGTTTCTTCGCTGCAGCT+AGG 0.512378 7_1:+67333278 Msa1032430:CDS
ATAGTAGAAGAAGTGGAAAT+GGG 0.513164 7_1:+67331764 Msa1032430:exon
TGACAAAATGTCCTGATACA+TGG 0.517890 7_1:+67332849 Msa1032430:CDS
TTTCCCACCCATTGATGTTG+AGG 0.520512 7_1:-67333243 None:intergenic
ATTCCTATCGGAGTTGTGCT+TGG 0.524605 7_1:+67333951 Msa1032430:CDS
CAGCTCCATAGTAGAAGAAG+TGG 0.525322 7_1:+67331757 Msa1032430:five_prime_UTR
TTGTGAATAGGTGTTTCTGT+TGG 0.527931 7_1:+67333870 Msa1032430:intron
GTCCTAGTCAGGTTTGCAAA+TGG 0.528064 7_1:+67332010 Msa1032430:CDS
TGTTAATAAATGGGCTGTAG+TGG 0.537932 7_1:+67335065 Msa1032430:CDS
GATTCTTCTAACAGGGAACA+TGG 0.541639 7_1:+67333088 Msa1032430:CDS
ATGAATCAAACAACACATCA+AGG 0.547424 7_1:+67335094 Msa1032430:CDS
AATTGGAAGAAGAAGAATTG+AGG 0.547786 7_1:-67332519 None:intergenic
CCAGATGTGGCAAATGCAGT+TGG 0.549172 7_1:+67333532 Msa1032430:CDS
ATTTGCCACATCTGGATTTG+GGG 0.550933 7_1:-67333524 None:intergenic
CAAGAATAGCACAAATCCAA+TGG 0.555748 7_1:-67333461 None:intergenic
TAAGACTGACTGGGACAAGC+AGG 0.560914 7_1:+67334925 Msa1032430:CDS
GTTGTAGCATATGTCAACAT+AGG 0.569004 7_1:+67333909 Msa1032430:CDS
GTTAGGGTGTCAAATGAACT+AGG 0.580896 7_1:+67333379 Msa1032430:CDS
AAAATGTCCTGATACATGGA+AGG 0.587310 7_1:+67332853 Msa1032430:CDS
GTGTCAAATGAACTAGGCAG+AGG 0.587372 7_1:+67333385 Msa1032430:CDS
TACCATTTGCAAACCTGACT+AGG 0.588271 7_1:-67332012 None:intergenic
GCAGCCTCAACATCAATGGG+TGG 0.590413 7_1:+67333239 Msa1032430:intron
GCCACTAAGGAAAAGGGTAT+GGG 0.595578 7_1:+67331847 Msa1032430:CDS
TTACCAAGCACAACTCCGAT+AGG 0.598268 7_1:-67333954 None:intergenic
TAGCTGCAGCGAAGAAACCA+AGG 0.602642 7_1:-67333276 None:intergenic
CAGCCTCAACATCAATGGGT+GGG 0.609170 7_1:+67333240 Msa1032430:intron
AACTAAAGAAGAATATCAAG+AGG 0.616189 7_1:+67335123 Msa1032430:exon
TGGGAAATGATGATAGCCCT+TGG 0.617562 7_1:+67333259 Msa1032430:CDS
TGACTAGGACAGTCATAACA+AGG 0.618469 7_1:-67331997 None:intergenic
GCATCAAAACCCTTCAGAGG+AGG 0.620658 7_1:+67331817 Msa1032430:CDS
AAATATTTACCAGAGAGCAC+AGG 0.621828 7_1:-67333604 None:intergenic
GGGAAGAAAGCAAGAAGCTG+TGG 0.627710 7_1:+67331867 Msa1032430:CDS
AAATCATATCTAGCCTCTAG+GGG 0.631776 7_1:-67335226 None:intergenic
TTTCACCCCAAATCCAGATG+TGG 0.632797 7_1:+67333519 Msa1032430:CDS
TGTCAAATGAACTAGGCAGA+GGG 0.643173 7_1:+67333386 Msa1032430:CDS
GCAGCATCAAAACCCTTCAG+AGG 0.649637 7_1:+67331814 Msa1032430:CDS
AAATGTCCTGATACATGGAA+GGG 0.649772 7_1:+67332854 Msa1032430:CDS
AATCACATTTAAGACTGACT+GGG 0.658771 7_1:+67334916 Msa1032430:CDS
AAAACCTATTGAATATGGCA+GGG 0.658833 7_1:-67331901 None:intergenic
TTGAAATTGAAACTGCTGCA+AGG 0.660479 7_1:-67332709 None:intergenic
TCTAGTCAAAAGACCCCTAG+AGG 0.663695 7_1:+67335213 Msa1032430:three_prime_UTR
ATTTACCAGAGAGCACAGGT+TGG 0.672429 7_1:-67333600 None:intergenic
ACTAGGCAGAGGGAGTTCCA+AGG 0.672625 7_1:+67333396 Msa1032430:CDS
TGTGAGCACTGTTATGACAA+TGG 0.674257 7_1:-67333431 None:intergenic
AGCTGCAGCGAAGAAACCAA+GGG 0.675016 7_1:-67333275 None:intergenic
GACTAGGACAGTCATAACAA+GGG 0.709723 7_1:-67331996 None:intergenic
AGTGCATTAGAAACACTATG+TGG 0.716160 7_1:+67332422 Msa1032430:CDS
AATATGGAGAATGATAACAA+AGG 0.716405 7_1:-67333565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTACTAAATAACAT+AGG + chr7_1:67334405-67334424 Msa1032430:intron 10.0%
!! TTTATATATAAACAAAGTAA+CGG - chr7_1:67334433-67334452 None:intergenic 10.0%
!! TATATTTGTCAAAAAATTAA+TGG - chr7_1:67334723-67334742 None:intergenic 10.0%
!!! TCAATTTTTAAGATTATGTA+TGG + chr7_1:67332974-67332993 Msa1032430:intron 15.0%
!! TAATTCATTTATCATTTACA+TGG + chr7_1:67334000-67334019 Msa1032430:intron 15.0%
!! TATATATACCAAATAGAAAA+TGG + chr7_1:67334739-67334758 Msa1032430:intron 15.0%
!! ATATATACCAAATAGAAAAT+GGG + chr7_1:67334740-67334759 Msa1032430:intron 15.0%
!! CTCTTTATATTATATATATG+TGG - chr7_1:67334768-67334787 None:intergenic 15.0%
!! ATGCTTAAAATTATAAGAAA+CGG - chr7_1:67334999-67335018 None:intergenic 15.0%
!!! TAATAACATATGTATTTTAC+AGG + chr7_1:67335023-67335042 Msa1032430:intron 15.0%
!!! ATTTTATTTTTTGAAGGAAT+TGG - chr7_1:67335293-67335312 None:intergenic 15.0%
!!! ATTTTAGTCCTTAAGATTAT+AGG + chr7_1:67333693-67333712 Msa1032430:intron 20.0%
!!! ACAACATTTTTAGATGAATT+TGG - chr7_1:67333851-67333870 None:intergenic 20.0%
!! CATGATTTCATAAAAATGAT+AGG - chr7_1:67334604-67334623 None:intergenic 20.0%
!!! CTATCATTTTTATGAAATCA+TGG + chr7_1:67334602-67334621 Msa1032430:intron 20.0%
!!! ATTTTTAGACATTTCATTCA+TGG - chr7_1:67334647-67334666 None:intergenic 20.0%
!! AATGATTAAAGAGATATTGT+TGG + chr7_1:67334812-67334831 Msa1032430:intron 20.0%
!! TAGAAATCGTGTTAATAAAT+GGG + chr7_1:67335056-67335075 Msa1032430:CDS 20.0%
! TGTTGAAAACCTATTGAATA+TGG - chr7_1:67331909-67331928 None:intergenic 25.0%
!! TTCAATAGGTTTTCAACATT+TGG + chr7_1:67331911-67331930 Msa1032430:CDS 25.0%
! ATCTTGCAAGTGAAAAAATA+AGG + chr7_1:67332342-67332361 Msa1032430:intron 25.0%
! AGCAAATTGAAAATTGTAGT+TGG + chr7_1:67332391-67332410 Msa1032430:intron 25.0%
! GCAAATTGAAAATTGTAGTT+GGG + chr7_1:67332392-67332411 Msa1032430:intron 25.0%
!! GGTTTGGTAAAAATGTAAAT+TGG - chr7_1:67332539-67332558 None:intergenic 25.0%
!! TTTTACCAAACCAATTTTAG+TGG + chr7_1:67332547-67332566 Msa1032430:CDS 25.0%
!!! CAATACATGTTTTTATGTCA+TGG + chr7_1:67332729-67332748 Msa1032430:CDS 25.0%
! TTGTCATGATAAAAATAAGC+TGG - chr7_1:67332835-67332854 None:intergenic 25.0%
!! GTTTGTAATCAAAGTTTGTT+TGG + chr7_1:67332996-67333015 Msa1032430:intron 25.0%
!! ACTTTTACAGTCTTGAAATA+TGG + chr7_1:67333051-67333070 Msa1032430:intron 25.0%
!!! ATTACATTTTTTGCAGTGTT+AGG + chr7_1:67333362-67333381 Msa1032430:intron 25.0%
!!! TTACATTTTTTGCAGTGTTA+GGG + chr7_1:67333363-67333382 Msa1032430:intron 25.0%
! AATATGGAGAATGATAACAA+AGG - chr7_1:67333568-67333587 None:intergenic 25.0%
! CTAAAAATGTTGTTGTGAAT+AGG + chr7_1:67333858-67333877 Msa1032430:intron 25.0%
!!! CTTTTTGGTAATTATGTCAT+TGG + chr7_1:67334208-67334227 Msa1032430:intron 25.0%
! GATGAAAAAATATGGTTGAT+AGG - chr7_1:67334311-67334330 None:intergenic 25.0%
! TATCAACATTACATTGTTCA+GGG - chr7_1:67334378-67334397 None:intergenic 25.0%
! ATATCAACATTACATTGTTC+AGG - chr7_1:67334379-67334398 None:intergenic 25.0%
! TCTATTCTAAATCTTCAATG+AGG - chr7_1:67334568-67334587 None:intergenic 25.0%
! CTTTAATCATTATGCGATAT+AGG - chr7_1:67334803-67334822 None:intergenic 25.0%
! TGTGATTATCATAAGCATTA+TGG - chr7_1:67334903-67334922 None:intergenic 25.0%
! CTAGAAATCGTGTTAATAAA+TGG + chr7_1:67335055-67335074 Msa1032430:CDS 25.0%
! TCTTGATATTCTTCTTTAGT+TGG - chr7_1:67335124-67335143 None:intergenic 25.0%
! AACTAAAGAAGAATATCAAG+AGG + chr7_1:67335123-67335142 Msa1032430:exon 25.0%
ATAGTAGAAGAAGTGGAAAT+GGG + chr7_1:67331764-67331783 Msa1032430:exon 30.0%
AAAACCTATTGAATATGGCA+GGG - chr7_1:67331904-67331923 None:intergenic 30.0%
! GTTTTCAACATTTGGTATCA+TGG + chr7_1:67331919-67331938 Msa1032430:CDS 30.0%
CTATAATACAATTGCGATTG+AGG - chr7_1:67332127-67332146 None:intergenic 30.0%
! GTTTTGTATTTGTGACATCA+AGG - chr7_1:67332161-67332180 None:intergenic 30.0%
CGATAATACTATTGTGATTG+AGG - chr7_1:67332232-67332251 None:intergenic 30.0%
GCAATTGTATTTGTGACATA+TGG - chr7_1:67332267-67332286 None:intergenic 30.0%
ACAAATACAATTGCAGTTGA+TGG + chr7_1:67332273-67332292 Msa1032430:intron 30.0%
TTGAAAATTGTAGTTGGGTA+TGG + chr7_1:67332397-67332416 Msa1032430:intron 30.0%
GCAAAACAATATGATATGCT+TGG + chr7_1:67332458-67332477 Msa1032430:CDS 30.0%
AATTGGAAGAAGAAGAATTG+AGG - chr7_1:67332522-67332541 None:intergenic 30.0%
! CTTGTGCAATATTTTCATCT+TGG - chr7_1:67332580-67332599 None:intergenic 30.0%
AGCATTTCAATATGGTCAAT+AGG + chr7_1:67332608-67332627 Msa1032430:CDS 30.0%
! TTAACTGTGAAGTTCAAGTT+TGG + chr7_1:67332755-67332774 Msa1032430:CDS 30.0%
!! TTTTGGCCTTTAAAGATCTT+TGG + chr7_1:67332885-67332904 Msa1032430:CDS 30.0%
! GATAAAGAAAGCTTGATAAC+AGG - chr7_1:67332911-67332930 None:intergenic 30.0%
ATCAAGCTTTCTTTATCTTC+TGG + chr7_1:67332914-67332933 Msa1032430:CDS 30.0%
!! ATAGCTTCATGTTAGTCTTA+TGG - chr7_1:67333027-67333046 None:intergenic 30.0%
ATAAGACTAACATGAAGCTA+TGG + chr7_1:67333026-67333045 Msa1032430:intron 30.0%
!!! ACAGTTTTGATTCTTCTAAC+AGG + chr7_1:67333080-67333099 Msa1032430:CDS 30.0%
!!! CAGTTTTGATTCTTCTAACA+GGG + chr7_1:67333081-67333100 Msa1032430:CDS 30.0%
TCTTGTCAGTACTAAATGTT+AGG + chr7_1:67333335-67333354 Msa1032430:intron 30.0%
! AATGGAAAATTTTGTTGCCT+TGG - chr7_1:67333416-67333435 None:intergenic 30.0%
TTAGTCCTTAAGATTATAGG+TGG + chr7_1:67333696-67333715 Msa1032430:intron 30.0%
CTGAAGGAGAATATTAGATA+AGG - chr7_1:67333730-67333749 None:intergenic 30.0%
! TTGTTGTTAGTGTAATCTGA+AGG - chr7_1:67333746-67333765 None:intergenic 30.0%
TACCTAATTGGTATTCCTAT+CGG + chr7_1:67333939-67333958 Msa1032430:CDS 30.0%
TCTTCTTCATTTGCAAGTTA+AGG + chr7_1:67333977-67333996 Msa1032430:CDS 30.0%
! ACCAAAAAGTGTAGTTGAAA+GGG - chr7_1:67334197-67334216 None:intergenic 30.0%
! TACCAAAAAGTGTAGTTGAA+AGG - chr7_1:67334198-67334217 None:intergenic 30.0%
ACAGACAACTAATATGTGTT+GGG + chr7_1:67334253-67334272 Msa1032430:intron 30.0%
TTACATTGTTCAGGGTAAAT+TGG - chr7_1:67334370-67334389 None:intergenic 30.0%
TTCTAAATCTTCAATGAGGA+CGG - chr7_1:67334564-67334583 None:intergenic 30.0%
!! ATATTGTTGGTGCTGAAATT+GGG + chr7_1:67334825-67334844 Msa1032430:intron 30.0%
! TAATCACATTTAAGACTGAC+TGG + chr7_1:67334915-67334934 Msa1032430:CDS 30.0%
! AATCACATTTAAGACTGACT+GGG + chr7_1:67334916-67334935 Msa1032430:CDS 30.0%
ATGAATCAAACAACACATCA+AGG + chr7_1:67335094-67335113 Msa1032430:CDS 30.0%
TCAGTGAAGAAAGTCTAATA+AGG + chr7_1:67335155-67335174 Msa1032430:three_prime_UTR 30.0%
AAAATCATATCTAGCCTCTA+GGG - chr7_1:67335230-67335249 None:intergenic 30.0%
TAAAATCATATCTAGCCTCT+AGG - chr7_1:67335231-67335250 None:intergenic 30.0%
CATTTCCACTTCTTCTACTA+TGG - chr7_1:67331765-67331784 None:intergenic 35.0%
CATAGTAGAAGAAGTGGAAA+TGG + chr7_1:67331763-67331782 Msa1032430:exon 35.0%
GAAAACCTATTGAATATGGC+AGG - chr7_1:67331905-67331924 None:intergenic 35.0%
CAATCCTTCATTGGTCATAT+TGG + chr7_1:67331950-67331969 Msa1032430:CDS 35.0%
TGAACCAATATGACCAATGA+AGG - chr7_1:67331957-67331976 None:intergenic 35.0%
GACTACGATTTAAACGATTG+AGG - chr7_1:67332057-67332076 None:intergenic 35.0%
AAATACAAAACTGCGATCGA+CGG + chr7_1:67332170-67332189 Msa1032430:intron 35.0%
TATTGTGATTGAGGTAGCAT+CGG - chr7_1:67332223-67332242 None:intergenic 35.0%
AGTGCATTAGAAACACTATG+TGG + chr7_1:67332422-67332441 Msa1032430:CDS 35.0%
GAGTGTATCTTCAAAGATCA+TGG + chr7_1:67332480-67332499 Msa1032430:CDS 35.0%
! AAGTGCCACTAAAATTGGTT+TGG - chr7_1:67332555-67332574 None:intergenic 35.0%
!! AAACCAATTTTAGTGGCACT+TGG + chr7_1:67332554-67332573 Msa1032430:CDS 35.0%
GAAAATATTGCACAAGTTGC+TGG + chr7_1:67332584-67332603 Msa1032430:CDS 35.0%
!! TTGCTGGAAGCATTTCAATA+TGG + chr7_1:67332600-67332619 Msa1032430:CDS 35.0%
TTTGTGCTTGTAGGAACATT+TGG - chr7_1:67332667-67332686 None:intergenic 35.0%
TTGAAATTGAAACTGCTGCA+AGG - chr7_1:67332712-67332731 None:intergenic 35.0%
!! AAGTTCAAGTTTGGCCTTAA+TGG + chr7_1:67332764-67332783 Msa1032430:CDS 35.0%
TTGATGTCATTGCACCATTA+AGG - chr7_1:67332781-67332800 None:intergenic 35.0%
! TGCAATGACATCAATCCTTT+TGG + chr7_1:67332787-67332806 Msa1032430:CDS 35.0%
!!! CATCAATCCTTTTGGCTTAT+TGG + chr7_1:67332795-67332814 Msa1032430:CDS 35.0%
GCTTATTGGATGCCAAATTT+GGG + chr7_1:67332809-67332828 Msa1032430:CDS 35.0%
AAAATAAGCTGGCCCAAATT+TGG - chr7_1:67332824-67332843 None:intergenic 35.0%
TGACAAAATGTCCTGATACA+TGG + chr7_1:67332849-67332868 Msa1032430:CDS 35.0%
AAAATGTCCTGATACATGGA+AGG + chr7_1:67332853-67332872 Msa1032430:CDS 35.0%
AAATGTCCTGATACATGGAA+GGG + chr7_1:67332854-67332873 Msa1032430:CDS 35.0%
! ATGGAAGGGTTTCTCATTTT+TGG + chr7_1:67332868-67332887 Msa1032430:CDS 35.0%
AACAGGCCAAAGATCTTTAA+AGG - chr7_1:67332894-67332913 None:intergenic 35.0%
!! TATCTTCTGGAGCTATGTTA+TGG + chr7_1:67332927-67332946 Msa1032430:CDS 35.0%
CAAGAATAGCACAAATCCAA+TGG - chr7_1:67333464-67333483 None:intergenic 35.0%
TTGATCTTTCTGTTCCTAAG+AGG + chr7_1:67333481-67333500 Msa1032430:CDS 35.0%
TTGGACACTGTTCATCAATA+TGG - chr7_1:67333584-67333603 None:intergenic 35.0%
! AAATATTTACCAGAGAGCAC+AGG - chr7_1:67333607-67333626 None:intergenic 35.0%
ACTTGCCACCTATAATCTTA+AGG - chr7_1:67333704-67333723 None:intergenic 35.0%
! TTGTGAATAGGTGTTTCTGT+TGG + chr7_1:67333870-67333889 Msa1032430:intron 35.0%
GTTGTAGCATATGTCAACAT+AGG + chr7_1:67333909-67333928 Msa1032430:CDS 35.0%
ATAGGCTGCTATTACCTAAT+TGG + chr7_1:67333927-67333946 Msa1032430:CDS 35.0%
! TGTAAGAGATTAGTCATTGG+TGG - chr7_1:67334141-67334160 None:intergenic 35.0%
ACCAATGACTAATCTCTTAC+AGG + chr7_1:67334140-67334159 Msa1032430:intron 35.0%
CCAATGACTAATCTCTTACA+GGG + chr7_1:67334141-67334160 Msa1032430:intron 35.0%
CAATGACTAATCTCTTACAG+GGG + chr7_1:67334142-67334161 Msa1032430:intron 35.0%
! ATCTCACCGACTATATTTAG+TGG + chr7_1:67334165-67334184 Msa1032430:intron 35.0%
! TCTCACCGACTATATTTAGT+GGG + chr7_1:67334166-67334185 Msa1032430:intron 35.0%
GAGATCCCACTAAATATAGT+CGG - chr7_1:67334174-67334193 None:intergenic 35.0%
! CCAAAAAGTGTAGTTGAAAG+GGG - chr7_1:67334196-67334215 None:intergenic 35.0%
CACAGACAACTAATATGTGT+TGG + chr7_1:67334252-67334271 Msa1032430:intron 35.0%
CAGACAACTAATATGTGTTG+GGG + chr7_1:67334254-67334273 Msa1032430:intron 35.0%
ATCTAACTTACCACCTTTGT+TGG + chr7_1:67334278-67334297 Msa1032430:intron 35.0%
TCTAACTTACCACCTTTGTT+GGG + chr7_1:67334279-67334298 Msa1032430:intron 35.0%
GACTCGTCGATGAAAAAATA+TGG - chr7_1:67334319-67334338 None:intergenic 35.0%
TGTTCAGGGTAAATTGGATT+TGG - chr7_1:67334364-67334383 None:intergenic 35.0%
! TGTGGATCCCATTTTCTATT+TGG - chr7_1:67334750-67334769 None:intergenic 35.0%
!! GATATTGTTGGTGCTGAAAT+TGG + chr7_1:67334824-67334843 Msa1032430:intron 35.0%
!!! TGAAATTGGGTCACTTTTGT+AGG + chr7_1:67334838-67334857 Msa1032430:intron 35.0%
!!! GAAATTGGGTCACTTTTGTA+GGG + chr7_1:67334839-67334858 Msa1032430:intron 35.0%
! GTTTGGATTGGAATGTTGTT+TGG + chr7_1:67334863-67334882 Msa1032430:CDS 35.0%
!! TGTTAATAAATGGGCTGTAG+TGG + chr7_1:67335065-67335084 Msa1032430:CDS 35.0%
AAATCATATCTAGCCTCTAG+GGG - chr7_1:67335229-67335248 None:intergenic 35.0%
AAGAAGAGCCACTAAGGAAA+AGG + chr7_1:67331840-67331859 Msa1032430:CDS 40.0%
AGAAGAGCCACTAAGGAAAA+GGG + chr7_1:67331841-67331860 Msa1032430:CDS 40.0%
GTAGTTGCTCAATCCTTCAT+TGG + chr7_1:67331941-67331960 Msa1032430:CDS 40.0%
! AAGGGCATAAGCAGCTAATT+CGG - chr7_1:67331981-67332000 None:intergenic 40.0%
GACTAGGACAGTCATAACAA+GGG - chr7_1:67331999-67332018 None:intergenic 40.0%
TGACTAGGACAGTCATAACA+AGG - chr7_1:67332000-67332019 None:intergenic 40.0%
TTGTTATGACTGTCCTAGTC+AGG + chr7_1:67331999-67332018 Msa1032430:CDS 40.0%
TACCATTTGCAAACCTGACT+AGG - chr7_1:67332015-67332034 None:intergenic 40.0%
CAGGTTTGCAAATGGTATTC+TGG + chr7_1:67332018-67332037 Msa1032430:CDS 40.0%
AATTGCGATTGAGGTAGCAT+CGG - chr7_1:67332118-67332137 None:intergenic 40.0%
ACACTATGTGGACAAGCATA+TGG + chr7_1:67332434-67332453 Msa1032430:CDS 40.0%
TGTTCTTGCTTTGTGCTTGT+AGG - chr7_1:67332676-67332695 None:intergenic 40.0%
TTGGCATCCAATAAGCCAAA+AGG - chr7_1:67332805-67332824 None:intergenic 40.0%
GGCTTATTGGATGCCAAATT+TGG + chr7_1:67332808-67332827 Msa1032430:CDS 40.0%
GATTCTTCTAACAGGGAACA+TGG + chr7_1:67333088-67333107 Msa1032430:CDS 40.0%
!! CCATATAGCAAGAGCATCAA+TGG - chr7_1:67333129-67333148 None:intergenic 40.0%
! CCATTGATGCTCTTGCTATA+TGG + chr7_1:67333126-67333145 Msa1032430:CDS 40.0%
! TTTTGCAGCCTCAACATCAA+TGG + chr7_1:67333235-67333254 Msa1032430:intron 40.0%
TTTGCAGCCTCAACATCAAT+GGG + chr7_1:67333236-67333255 Msa1032430:intron 40.0%
! GTTAGGGTGTCAAATGAACT+AGG + chr7_1:67333379-67333398 Msa1032430:CDS 40.0%
TGTCAAATGAACTAGGCAGA+GGG + chr7_1:67333386-67333405 Msa1032430:CDS 40.0%
! TGTGAGCACTGTTATGACAA+TGG - chr7_1:67333434-67333453 None:intergenic 40.0%
! GTGCTCACATCATTTTCCAT+TGG + chr7_1:67333445-67333464 Msa1032430:CDS 40.0%
TGTAAGCAAGTCTTCCTCTT+AGG - chr7_1:67333498-67333517 None:intergenic 40.0%
ATTTGCCACATCTGGATTTG+GGG - chr7_1:67333527-67333546 None:intergenic 40.0%
CATTTGCCACATCTGGATTT+GGG - chr7_1:67333528-67333547 None:intergenic 40.0%
!! ACCATTGATTTGAGATCCGA+CGG + chr7_1:67333790-67333809 Msa1032430:intron 40.0%
TAACAGCGAGACGGAATATT+TGG - chr7_1:67333817-67333836 None:intergenic 40.0%
AATATTCCGTCTCGCTGTTA+CGG + chr7_1:67333817-67333836 Msa1032430:intron 40.0%
CTCCGATAGGAATACCAATT+AGG - chr7_1:67333944-67333963 None:intergenic 40.0%
GATGTTTCGCACTAATACGA+TGG - chr7_1:67334119-67334138 None:intergenic 40.0%
! CCCTGTAAGAGATTAGTCAT+TGG - chr7_1:67334144-67334163 None:intergenic 40.0%
! CCCCTTTCAACTACACTTTT+TGG + chr7_1:67334193-67334212 Msa1032430:intron 40.0%
CTAACTTACCACCTTTGTTG+GGG + chr7_1:67334280-67334299 Msa1032430:intron 40.0%
TTGTCAGTATCAACCGCAAT+TGG + chr7_1:67334681-67334700 Msa1032430:intron 40.0%
!! CTTTTGTAGGGTGTTTGGAT+TGG + chr7_1:67334851-67334870 Msa1032430:intron 40.0%
CAGCTCCATAGTAGAAGAAG+TGG + chr7_1:67331757-67331776 Msa1032430:five_prime_UTR 45.0%
!! AAGGGTTTTGATGCTGCAGA+AGG - chr7_1:67331811-67331830 None:intergenic 45.0%
AGCCACTAAGGAAAAGGGTA+TGG + chr7_1:67331846-67331865 Msa1032430:CDS 45.0%
! GCCACTAAGGAAAAGGGTAT+GGG + chr7_1:67331847-67331866 Msa1032430:CDS 45.0%
! TCCCATACCCTTTTCCTTAG+TGG - chr7_1:67331851-67331870 None:intergenic 45.0%
AAGAAGCTGTGGATAGTAGC+AGG + chr7_1:67331878-67331897 Msa1032430:CDS 45.0%
GTCCTAGTCAGGTTTGCAAA+TGG + chr7_1:67332010-67332029 Msa1032430:CDS 45.0%
! TGGCCAAGTGCCACTAAAAT+TGG - chr7_1:67332560-67332579 None:intergenic 45.0%
GAGAAACCCTTCCATGTATC+AGG - chr7_1:67332863-67332882 None:intergenic 45.0%
TTTCCCACCCATTGATGTTG+AGG - chr7_1:67333246-67333265 None:intergenic 45.0%
TGGGAAATGATGATAGCCCT+TGG + chr7_1:67333259-67333278 Msa1032430:CDS 45.0%
GTGTCAAATGAACTAGGCAG+AGG + chr7_1:67333385-67333404 Msa1032430:CDS 45.0%
TTTCACCCCAAATCCAGATG+TGG + chr7_1:67333519-67333538 Msa1032430:CDS 45.0%
GCATTTGCCACATCTGGATT+TGG - chr7_1:67333529-67333548 None:intergenic 45.0%
! ATTTACCAGAGAGCACAGGT+TGG - chr7_1:67333603-67333622 None:intergenic 45.0%
ACCGTCGGATCTCAAATCAA+TGG - chr7_1:67333794-67333813 None:intergenic 45.0%
AGACGGAATATTTGGACCGT+CGG - chr7_1:67333809-67333828 None:intergenic 45.0%
! ATAGGTGTTTCTGTTGGAGC+TGG + chr7_1:67333876-67333895 Msa1032430:intron 45.0%
ATTCCTATCGGAGTTGTGCT+TGG + chr7_1:67333951-67333970 Msa1032430:CDS 45.0%
TTACCAAGCACAACTCCGAT+AGG - chr7_1:67333957-67333976 None:intergenic 45.0%
CAGTATCAACCGCAATTGGT+TGG + chr7_1:67334685-67334704 Msa1032430:intron 45.0%
TCAACCGCAATTGGTTGGAT+TGG + chr7_1:67334690-67334709 Msa1032430:intron 45.0%
CCAACCAATCCAACCAATTG+CGG - chr7_1:67334697-67334716 None:intergenic 45.0%
!!! GGTCACTTTTGTAGGGTGTT+TGG + chr7_1:67334846-67334865 Msa1032430:intron 45.0%
TCTAGTCAAAAGACCCCTAG+AGG + chr7_1:67335213-67335232 Msa1032430:three_prime_UTR 45.0%
!!! ACATTATTTATAATTTTTTT+TGG + chr7_1:67334090-67334109 Msa1032430:intron 5.0%
GCAGCATCAAAACCCTTCAG+AGG + chr7_1:67331814-67331833 Msa1032430:CDS 50.0%
GCATCAAAACCCTTCAGAGG+AGG + chr7_1:67331817-67331836 Msa1032430:CDS 50.0%
GCTCTTCTTCCTCCTCTGAA+GGG - chr7_1:67331829-67331848 None:intergenic 50.0%
AGGAGGAAGAAGAGCCACTA+AGG + chr7_1:67331834-67331853 Msa1032430:CDS 50.0%
GGGAAGAAAGCAAGAAGCTG+TGG + chr7_1:67331867-67331886 Msa1032430:CDS 50.0%
CAGGCCCTGCCATATTCAAT+AGG + chr7_1:67331897-67331916 Msa1032430:CDS 50.0%
CAGCCTCAACATCAATGGGT+GGG + chr7_1:67333240-67333259 Msa1032430:intron 50.0%
AGCTGCAGCGAAGAAACCAA+GGG - chr7_1:67333278-67333297 None:intergenic 50.0%
TAGCTGCAGCGAAGAAACCA+AGG - chr7_1:67333279-67333298 None:intergenic 50.0%
TTGGTTTCTTCGCTGCAGCT+AGG + chr7_1:67333278-67333297 Msa1032430:CDS 50.0%
CCAACTGCATTTGCCACATC+TGG - chr7_1:67333535-67333554 None:intergenic 50.0%
CCAGATGTGGCAAATGCAGT+TGG + chr7_1:67333532-67333551 Msa1032430:CDS 50.0%
TCTCTACCGTAACAGCGAGA+CGG - chr7_1:67333826-67333845 None:intergenic 50.0%
GATAGGAGAGACCCCAACAA+AGG - chr7_1:67334294-67334313 None:intergenic 50.0%
!! CCGCAATTGGTTGGATTGGT+TGG + chr7_1:67334694-67334713 Msa1032430:intron 50.0%
TAAGACTGACTGGGACAAGC+AGG + chr7_1:67334925-67334944 Msa1032430:CDS 50.0%
GGCTCTTCTTCCTCCTCTGA+AGG - chr7_1:67331830-67331849 None:intergenic 55.0%
! TGCGATTGAGGTAGCATCGG+TGG - chr7_1:67332115-67332134 None:intergenic 55.0%
GCAGCCTCAACATCAATGGG+TGG + chr7_1:67333239-67333258 Msa1032430:intron 55.0%
ACTAGGCAGAGGGAGTTCCA+AGG + chr7_1:67333396-67333415 Msa1032430:CDS 55.0%
AGTGTCCAACCTGTGCTCTC+TGG + chr7_1:67333595-67333614 Msa1032430:CDS 55.0%
! GTGTTTCTGTTGGAGCTGGC+TGG + chr7_1:67333880-67333899 Msa1032430:CDS 55.0%
AGGAGAGACCCCAACAAAGG+TGG - chr7_1:67334291-67334310 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67331680 67335317 67331680 ID=Msa1032430;Name=Msa1032430
chr7_1 mRNA 67331680 67335317 67331680 ID=Msa1032430-mRNA-1;Parent=Msa1032430;Name=Msa1032430-mRNA-1;_AED=0.34;_eAED=0.34;_QI=102|1|1|1|1|1|8|189|489
chr7_1 exon 67331680 67332039 67331680 ID=Msa1032430-mRNA-1:exon:15455;Parent=Msa1032430-mRNA-1
chr7_1 exon 67332410 67332948 67332410 ID=Msa1032430-mRNA-1:exon:15456;Parent=Msa1032430-mRNA-1
chr7_1 exon 67333061 67333147 67333061 ID=Msa1032430-mRNA-1:exon:15457;Parent=Msa1032430-mRNA-1
chr7_1 exon 67333243 67333299 67333243 ID=Msa1032430-mRNA-1:exon:15458;Parent=Msa1032430-mRNA-1
chr7_1 exon 67333378 67333616 67333378 ID=Msa1032430-mRNA-1:exon:15459;Parent=Msa1032430-mRNA-1
chr7_1 exon 67333880 67333998 67333880 ID=Msa1032430-mRNA-1:exon:15460;Parent=Msa1032430-mRNA-1
chr7_1 exon 67334860 67334946 67334860 ID=Msa1032430-mRNA-1:exon:15461;Parent=Msa1032430-mRNA-1
chr7_1 exon 67335045 67335317 67335045 ID=Msa1032430-mRNA-1:exon:15462;Parent=Msa1032430-mRNA-1
chr7_1 five_prime_UTR 67331680 67331781 67331680 ID=Msa1032430-mRNA-1:five_prime_utr;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67331782 67332039 67331782 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67332410 67332948 67332410 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67333061 67333147 67333061 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67333243 67333299 67333243 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67333378 67333616 67333378 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67333880 67333998 67333880 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67334860 67334946 67334860 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 CDS 67335045 67335128 67335045 ID=Msa1032430-mRNA-1:cds;Parent=Msa1032430-mRNA-1
chr7_1 three_prime_UTR 67335129 67335317 67335129 ID=Msa1032430-mRNA-1:three_prime_utr;Parent=Msa1032430-mRNA-1
Gene Sequence

>Msa1032430

ATGGGATCAGAAGAACTAAACAAGAACCTTCTGCAGCATCAAAACCCTTCAGAGGAGGAAGAAGAGCCACTAAGGAAAAGGGTATGGGAAGAAAGCAAGAAGCTGTGGATAGTAGCAGGCCCTGCCATATTCAATAGGTTTTCAACATTTGGTATCATGGTAGTTGCTCAATCCTTCATTGGTCATATTGGTTCAACCGAATTAGCTGCTTATGCCCTTGTTATGACTGTCCTAGTCAGGTTTGCAAATGGTATTCTGTTGGGTATGGCAAGTGCATTAGAAACACTATGTGGACAAGCATATGGAGCAAAACAATATGATATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTTATATTCTTAACCTCAATTCTTCTTCTTCCAATTTACATTTTTACCAAACCAATTTTAGTGGCACTTGGCCAAGATGAAAATATTGCACAAGTTGCTGGAAGCATTTCAATATGGTCAATAGGTATAGTATTTGCTTTCTCTGCATCATTCACTTGCCAAATGTTCCTACAAGCACAAAGCAAGAACAAGATTATTGCTTACCTTGCAGCAGTTTCAATTTCAATACATGTTTTTATGTCATGGCTTTTAACTGTGAAGTTCAAGTTTGGCCTTAATGGTGCAATGACATCAATCCTTTTGGCTTATTGGATGCCAAATTTGGGCCAGCTTATTTTTATCATGACAAAATGTCCTGATACATGGAAGGGTTTCTCATTTTTGGCCTTTAAAGATCTTTGGCCTGTTATCAAGCTTTCTTTATCTTCTGGAGCTATGTTATGTCTTGAAATATGGTACAACACAGTTTTGATTCTTCTAACAGGGAACATGGAAAATGCTGAGATTTCCATTGATGCTCTTGCTATATGCCTCAACATCAATGGGTGGGAAATGATGATAGCCCTTGGTTTCTTCGCTGCAGCTAGTGTTAGGGTGTCAAATGAACTAGGCAGAGGGAGTTCCAAGGCAACAAAATTTTCCATTGTCATAACAGTGCTCACATCATTTTCCATTGGATTTGTGCTATTCTTGATCTTTCTGTTCCTAAGAGGAAGACTTGCTTACATTTTCACCCCAAATCCAGATGTGGCAAATGCAGTTGGAGATCTATCACCTTTGTTATCATTCTCCATATTGATGAACAGTGTCCAACCTGTGCTCTCTGGTGTTTCTGTTGGAGCTGGCTGGCAAAGTGTTGTAGCATATGTCAACATAGGCTGCTATTACCTAATTGGTATTCCTATCGGAGTTGTGCTTGGTAATCTTCTTCATTTGCAAGTTAAGGGTGTTTGGATTGGAATGTTGTTTGGAACTTTTGTTCAAACCATAATGCTTATGATAATCACATTTAAGACTGACTGGGACAAGCAGGTTGAGATTGCTAGAAATCGTGTTAATAAATGGGCTGTAGTGGAGAATGATGAATCAAACAACACATCAAGGATATCCAACTAA
Protein sequence

>Msa1032430

MGSEELNKNLLQHQNPSEEEEEPLRKRVWEESKKLWIVAGPAIFNRFSTFGIMVVAQSFIGHIGSTELAAYALVMTVLVRFANGILLGMASALETLCGQAYGAKQYDMLGVYLQRSWIVIFLTSILLLPIYIFTKPILVALGQDENIAQVAGSISIWSIGIVFAFSASFTCQMFLQAQSKNKIIAYLAAVSISIHVFMSWLLTVKFKFGLNGAMTSILLAYWMPNLGQLIFIMTKCPDTWKGFSFLAFKDLWPVIKLSLSSGAMLCLEIWYNTVLILLTGNMENAEISIDALAICLNINGWEMMIALGFFAAASVRVSNELGRGSSKATKFSIVITVLTSFSIGFVLFLIFLFLRGRLAYIFTPNPDVANAVGDLSPLLSFSILMNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPIGVVLGNLLHLQVKGVWIGMLFGTFVQTIMLMIITFKTDWDKQVEIARNRVNKWAVVENDESNNTSRISN*