Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456950 | XP_013453265.2 | 92.982 | 456 | 12 | 4 | 4 | 439 | 3 | 458 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456950 | sp|Q6ZY51|PWD_ARATH | 61.364 | 396 | 140 | 4 | 54 | 439 | 49 | 441 | 3.41e-170 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456950 | A0A396HKU7 | 92.982 | 456 | 12 | 4 | 4 | 439 | 3 | 458 | 0.0 | 882 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0456950 | 0.839783 | 1.288641e-57 | -8.615850e-47 |
| Msa0003420 | Msa0456950 | 0.802172 | 6.363935e-49 | -8.615850e-47 |
| Msa0022230 | Msa0456950 | 0.809746 | 1.624432e-50 | -8.615850e-47 |
| Msa0025090 | Msa0456950 | 0.816717 | 4.788384e-52 | -8.615850e-47 |
| Msa0079320 | Msa0456950 | 0.804913 | 1.719559e-49 | -8.615850e-47 |
| Msa0081700 | Msa0456950 | 0.811582 | 6.515198e-51 | -8.615850e-47 |
| Msa0091300 | Msa0456950 | 0.813758 | 2.176728e-51 | -8.615850e-47 |
| Msa0099090 | Msa0456950 | 0.809527 | 1.810468e-50 | -8.615850e-47 |
| Msa0106810 | Msa0456950 | 0.800137 | 1.659726e-48 | -8.615850e-47 |
| Msa0137810 | Msa0456950 | 0.801725 | 7.863124e-49 | -8.615850e-47 |
| Msa0148000 | Msa0456950 | 0.809765 | 1.609308e-50 | -8.615850e-47 |
| Msa0153290 | Msa0456950 | 0.829938 | 3.889731e-55 | -8.615850e-47 |
| Msa0172110 | Msa0456950 | 0.803751 | 3.001328e-49 | -8.615850e-47 |
| Msa0198140 | Msa0456950 | 0.817612 | 3.012875e-52 | -8.615850e-47 |
| Msa0198220 | Msa0456950 | 0.806284 | 8.862384e-50 | -8.615850e-47 |
| Msa0226580 | Msa0456950 | 0.803515 | 3.360587e-49 | -8.615850e-47 |
| Msa0232170 | Msa0456950 | 0.834852 | 2.357830e-56 | -8.615850e-47 |
| Msa0365200 | Msa0456950 | 0.891296 | 4.520471e-74 | -8.615850e-47 |
| Msa0412480 | Msa0456950 | 0.877700 | 5.090228e-69 | -8.615850e-47 |
| Msa0434840 | Msa0456950 | 0.806481 | 8.057167e-50 | -8.615850e-47 |
| Msa0456950 | Msa0478750 | 0.822563 | 2.215925e-53 | -8.615850e-47 |
| Msa0456950 | Msa0483160 | 0.817235 | 3.663795e-52 | -8.615850e-47 |
| Msa0456950 | Msa0486210 | 0.851487 | 8.594106e-61 | -8.615850e-47 |
| Msa0456950 | Msa0506090 | 0.810290 | 1.240344e-50 | -8.615850e-47 |
| Msa0456950 | Msa0522830 | 0.825660 | 4.153532e-54 | -8.615850e-47 |
| Msa0456950 | Msa0525940 | 0.820607 | 6.273799e-53 | -8.615850e-47 |
| Msa0456950 | Msa0540160 | 0.815469 | 9.096990e-52 | -8.615850e-47 |
| Msa0456950 | Msa0549550 | 0.807980 | 3.876873e-50 | -8.615850e-47 |
| Msa0456950 | Msa0559270 | 0.821729 | 3.458090e-53 | -8.615850e-47 |
| Msa0456950 | Msa0563230 | 0.833820 | 4.282009e-56 | -8.615850e-47 |
| Msa0456950 | Msa0568260 | 0.807481 | 4.950339e-50 | -8.615850e-47 |
| Msa0456950 | Msa0617470 | 0.807144 | 5.833250e-50 | -8.615850e-47 |
| Msa0456950 | Msa0632040 | 0.803464 | 3.442563e-49 | -8.615850e-47 |
| Msa0456950 | Msa0646180 | 0.809288 | 2.037308e-50 | -8.615850e-47 |
| Msa0456950 | Msa0649530 | 0.805663 | 1.197243e-49 | -8.615850e-47 |
| Msa0456950 | Msa0700250 | 0.810612 | 1.057259e-50 | -8.615850e-47 |
| Msa0456950 | Msa0713590 | 0.802998 | 4.298667e-49 | -8.615850e-47 |
| Msa0456950 | Msa0722660 | 0.821989 | 3.010567e-53 | -8.615850e-47 |
| Msa0456950 | Msa0733460 | 0.804161 | 2.466595e-49 | -8.615850e-47 |
| Msa0456950 | Msa0755530 | 0.800463 | 1.424417e-48 | -8.615850e-47 |
| Msa0456950 | Msa0779830 | 0.805962 | 1.036255e-49 | -8.615850e-47 |
| Msa0456950 | Msa0797210 | 0.807852 | 4.127649e-50 | -8.615850e-47 |
| Msa0456950 | Msa0835070 | 0.804213 | 2.406667e-49 | -8.615850e-47 |
| Msa0456950 | Msa0998900 | 0.803124 | 4.048519e-49 | -8.615850e-47 |
| Msa0456950 | Msa1018210 | 0.811447 | 6.969874e-51 | -8.615850e-47 |
| Msa0456950 | Msa1072410 | 0.802333 | 5.897745e-49 | -8.615850e-47 |
| Msa0456950 | Msa1175850 | 0.811080 | 8.372213e-51 | -8.615850e-47 |
| Msa0456950 | Msa1190460 | 0.812760 | 3.604761e-51 | -8.615850e-47 |
| Msa0456950 | Msa1203210 | 0.804075 | 2.570995e-49 | -8.615850e-47 |
| Msa0456950 | Msa1204390 | 0.809241 | 2.085123e-50 | -8.615850e-47 |
| Msa0456950 | Msa1295840 | 0.810128 | 1.344482e-50 | -8.615850e-47 |
| Msa0456950 | Msa1296610 | 0.805748 | 1.149380e-49 | -8.615850e-47 |
| Msa0456950 | Msa1329020 | 0.819526 | 1.108878e-52 | -8.615850e-47 |
| Msa0456950 | Msa1346920 | 0.810704 | 1.009963e-50 | -8.615850e-47 |
| Msa0456950 | Msa1359880 | 0.805917 | 1.058954e-49 | -8.615850e-47 |
| Msa0456950 | Msa1369220 | 0.807549 | 4.788534e-50 | -8.615850e-47 |
| Msa0456950 | Msa1371060 | 0.803389 | 3.568958e-49 | -8.615850e-47 |
| Msa0456950 | Msa1372470 | 0.807328 | 5.332775e-50 | -8.615850e-47 |
| Msa0456950 | Msa1434850 | 0.804410 | 2.189265e-49 | -8.615850e-47 |
| Msa0456950 | Msa1448840 | 0.822845 | 1.905044e-53 | -8.615850e-47 |
| Msa0266380 | Msa0456950 | 0.800107 | 1.682660e-48 | -8.615850e-47 |
| Msa0278340 | Msa0456950 | 0.808281 | 3.345716e-50 | -8.615850e-47 |
| Msa0279460 | Msa0456950 | 0.820746 | 5.827071e-53 | -8.615850e-47 |
| Msa0310260 | Msa0456950 | 0.805520 | 1.283247e-49 | -8.615850e-47 |
| Msa0315010 | Msa0456950 | 0.801107 | 1.052521e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456950 | MtrunA17_Chr6g0488911 | 92.982 | 456 | 12 | 4 | 4 | 439 | 3 | 458 | 0.0 | 882 |
| Msa0456950 | MtrunA17_Chr1g0213931 | 94.444 | 72 | 4 | 0 | 291 | 362 | 1 | 72 | 7.20e-44 | 148 |
| Msa0456950 | MtrunA17_Chr1g0213921 | 100.000 | 34 | 0 | 0 | 404 | 437 | 1 | 34 | 3.35e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456950 | AT5G26570.2 | 61.364 | 396 | 140 | 4 | 54 | 439 | 49 | 441 | 3.74e-174 | 510 |
| Msa0456950 | AT5G26570.1 | 61.364 | 396 | 140 | 4 | 54 | 439 | 49 | 441 | 3.47e-171 | 512 |
Find 149 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTCTCTTGGAAGTTAT+TGG | 0.164678 | 3_3:+51245642 | Msa0456950:three_prime_UTR |
| CCCAAGTCCTTTGTGTTTCA+TGG | 0.188668 | 3_3:-51242983 | None:intergenic |
| TGAATCCTCTTGGCTGATTA+TGG | 0.233134 | 3_3:-51242298 | None:intergenic |
| GGTGACCATGTTGTGCTTCT+TGG | 0.252280 | 3_3:+51242564 | Msa0456950:CDS |
| ATTAGGATTCGAATTCCTTC+TGG | 0.283921 | 3_3:-51242264 | None:intergenic |
| CCACCCATGTTCCCTTGAAT+TGG | 0.305119 | 3_3:+51242613 | Msa0456950:CDS |
| TATGATACCTAGGTTGGGTT+TGG | 0.323525 | 3_3:-51242394 | None:intergenic |
| TGAAATTTCAGCATGCCTAT+TGG | 0.325389 | 3_3:-51244862 | None:intergenic |
| ATTAATGTCTTCTTTGTTGT+TGG | 0.342523 | 3_3:-51242502 | None:intergenic |
| GAAATTTCAGCATGCCTATT+GGG | 0.352024 | 3_3:-51244861 | None:intergenic |
| TCTTCATCCTATGTGGGACT+TGG | 0.357249 | 3_3:-51245671 | None:intergenic |
| GTCTTCCAATCACTCTCTCT+TGG | 0.375219 | 3_3:+51245632 | Msa0456950:three_prime_UTR |
| ATATCTCTGATTCGAGTTAG+AGG | 0.376143 | 3_3:-51245208 | None:intergenic |
| TGGGATACCTCAGGTCTTCA+AGG | 0.383554 | 3_3:+51243002 | Msa0456950:CDS |
| GGCACTTTACACTGGGAATC+TGG | 0.387828 | 3_3:+51242717 | Msa0456950:CDS |
| TTATGGTTCCGATTCCGATT+AGG | 0.394702 | 3_3:-51242281 | None:intergenic |
| GAACAAAACACACCAGACTA+TGG | 0.395168 | 3_3:+51242797 | Msa0456950:CDS |
| GGTCCAGGAGCCCAACTGTT+TGG | 0.395487 | 3_3:-51242592 | None:intergenic |
| GATATAGTCGGAAGTGTTCA+TGG | 0.414405 | 3_3:+51244649 | Msa0456950:CDS |
| GGTGATCGCCGGCGTTGAAA+TGG | 0.414806 | 3_3:-51242662 | None:intergenic |
| GGGATCAAAGCGCAAGGAAT+TGG | 0.415864 | 3_3:+51243048 | Msa0456950:CDS |
| TTCGAATTCCTTCTGGGACT+GGG | 0.417580 | 3_3:-51242257 | None:intergenic |
| TTGCCTCTCAAGTTTGTTCA+AGG | 0.420915 | 3_3:+51243026 | Msa0456950:CDS |
| CCAAGTCCTTTGTGTTTCAT+GGG | 0.422081 | 3_3:-51242982 | None:intergenic |
| TTAGGATTCGAATTCCTTCT+GGG | 0.425632 | 3_3:-51242263 | None:intergenic |
| CAACCAAACAGTTGGGCTCC+TGG | 0.430043 | 3_3:+51242589 | Msa0456950:CDS |
| TTAGATCACCAAGTTGAATT+CGG | 0.430046 | 3_3:+51242543 | Msa0456950:CDS |
| ATGATACCTAGGTTGGGTTT+GGG | 0.430154 | 3_3:-51242393 | None:intergenic |
| ACCATTTGGTGTCCAATTCA+AGG | 0.433494 | 3_3:-51242625 | None:intergenic |
| TCCATGTTTGCCTTCATTCA+AGG | 0.434190 | 3_3:+51245165 | Msa0456950:CDS |
| CATTACAAAACCAACTTGTA+AGG | 0.434405 | 3_3:-51245732 | None:intergenic |
| AACTTCCAAGAGAGAGTGAT+TGG | 0.438203 | 3_3:-51245637 | None:intergenic |
| CTCAAAGACTTCTTTAATGC+TGG | 0.438334 | 3_3:+51245532 | Msa0456950:CDS |
| TGTTCATGGGGAAGATCAAT+TGG | 0.439782 | 3_3:+51244663 | Msa0456950:CDS |
| GAGGTCACCACCGTCCCAAT+AGG | 0.453384 | 3_3:+51244847 | Msa0456950:CDS |
| GGTCATGTGGGATGTCATTT+CGG | 0.454813 | 3_3:-51245237 | None:intergenic |
| ATAGGCATGCTGAAATTTCA+AGG | 0.457266 | 3_3:+51244865 | Msa0456950:CDS |
| GAAGGAATTCGAATCCTAAT+CGG | 0.457612 | 3_3:+51242267 | Msa0456950:CDS |
| AATGTTTCACTATATTCTCC+AGG | 0.458569 | 3_3:-51245478 | None:intergenic |
| TCTGTAGCAACCAAGTCTTC+AGG | 0.459388 | 3_3:-51245427 | None:intergenic |
| ATTCGAATTCCTTCTGGGAC+TGG | 0.464628 | 3_3:-51242258 | None:intergenic |
| TTGGGTTTGGGTGGAAGAGG+AGG | 0.465531 | 3_3:-51242381 | None:intergenic |
| GCTCCTCTTTCAGATGCAGC+AGG | 0.466346 | 3_3:+51242891 | Msa0456950:CDS |
| CAAGGGAACATGGGTGGTCC+AGG | 0.466515 | 3_3:-51242607 | None:intergenic |
| GCCTCTCAAGTTTGTTCAAG+GGG | 0.467475 | 3_3:+51243028 | Msa0456950:CDS |
| CTTCATCCTATGTGGGACTT+GGG | 0.467939 | 3_3:-51245670 | None:intergenic |
| CCCTTGAATTGGACACCAAA+TGG | 0.474571 | 3_3:+51242624 | Msa0456950:CDS |
| AAGACTTCTTTAATGCTGGC+AGG | 0.474634 | 3_3:+51245536 | Msa0456950:CDS |
| TGGTGTGGTGTGGTGTGGAG+TGG | 0.474757 | 3_3:-51242151 | None:intergenic |
| AGGTTGGGTTTGGGTGGAAG+AGG | 0.476698 | 3_3:-51242384 | None:intergenic |
| CCCATGAAACACAAAGGACT+TGG | 0.478253 | 3_3:+51242982 | Msa0456950:CDS |
| CCCAGTGTAAAGTGCCATCC+TGG | 0.482451 | 3_3:-51242710 | None:intergenic |
| AAGGAAGTAACTCCATAGTC+TGG | 0.482731 | 3_3:-51242809 | None:intergenic |
| GTATTAAACTTGCCCAATGC+TGG | 0.484652 | 3_3:+51242750 | Msa0456950:CDS |
| TCTTGGATCAACCAAACAGT+TGG | 0.488116 | 3_3:+51242581 | Msa0456950:CDS |
| CAATGGTGAATTTGAATTCA+AGG | 0.488443 | 3_3:-51242683 | None:intergenic |
| AAGAGATATGATACCTAGGT+TGG | 0.488768 | 3_3:-51242400 | None:intergenic |
| ACCAGGATGGCACTTTACAC+TGG | 0.489768 | 3_3:+51242709 | Msa0456950:CDS |
| GTCTGAAAATGACCAGCATT+GGG | 0.490068 | 3_3:-51242762 | None:intergenic |
| CCTTGCCACTCTCCTACAAA+AGG | 0.490365 | 3_3:-51242921 | None:intergenic |
| CGCAAGGAATTGGTGGAGAA+AGG | 0.490585 | 3_3:+51243058 | Msa0456950:CDS |
| CAAATTCACCATTGTCCACC+AGG | 0.490714 | 3_3:+51242692 | Msa0456950:CDS |
| GAATTGGACACCAAATGGTT+GGG | 0.493628 | 3_3:+51242629 | Msa0456950:CDS |
| TGCCTCTCAAGTTTGTTCAA+GGG | 0.498175 | 3_3:+51243027 | Msa0456950:CDS |
| CTTGGATCAACCAAACAGTT+GGG | 0.498856 | 3_3:+51242582 | Msa0456950:CDS |
| TGGTGTGGTGTGGTGTGGTG+TGG | 0.498919 | 3_3:-51242156 | None:intergenic |
| TGGTGTGGTGTGGAGTGGTG+TGG | 0.499922 | 3_3:-51242146 | None:intergenic |
| GGTCTGAAAATGACCAGCAT+TGG | 0.500178 | 3_3:-51242763 | None:intergenic |
| TTCTGTTCATTGAAATTCAA+AGG | 0.502073 | 3_3:-51242828 | None:intergenic |
| TATGTTATCTTCATCCTATG+TGG | 0.502453 | 3_3:-51245678 | None:intergenic |
| AGAATATAGTGAAACATTTG+TGG | 0.502804 | 3_3:+51245483 | Msa0456950:CDS |
| GTGTCCAATTCAAGGGAACA+TGG | 0.504504 | 3_3:-51242617 | None:intergenic |
| TTTGTGTTTCATGGGTCTGA+TGG | 0.505071 | 3_3:-51242974 | None:intergenic |
| AAGTCGCATACCCAACCATT+TGG | 0.512231 | 3_3:-51242639 | None:intergenic |
| TGAATTGGACACCAAATGGT+TGG | 0.514554 | 3_3:+51242628 | Msa0456950:CDS |
| CATGGTCACCGAATTCAACT+TGG | 0.514895 | 3_3:-51242551 | None:intergenic |
| TTCATGGGTCTGATGGTCGT+TGG | 0.517749 | 3_3:-51242967 | None:intergenic |
| GAGGATGATGAAGATAATGA+TGG | 0.519702 | 3_3:-51242329 | None:intergenic |
| AGAGATATGATACCTAGGTT+GGG | 0.520879 | 3_3:-51242399 | None:intergenic |
| AGTCTTCAGGACCAGCGTTA+CGG | 0.527185 | 3_3:-51245414 | None:intergenic |
| ATTCGAATCCTAATCGGAAT+CGG | 0.529683 | 3_3:+51242273 | Msa0456950:CDS |
| GCCTTGAATGAAGGCAAACA+TGG | 0.538777 | 3_3:-51245166 | None:intergenic |
| ATCAAAGCGCAAGGAATTGG+TGG | 0.540940 | 3_3:+51243051 | Msa0456950:CDS |
| TGAAATGTAATGCACGTGTA+TGG | 0.544720 | 3_3:+51242076 | Msa0456950:five_prime_UTR |
| TAACGCTGGTCCTGAAGACT+TGG | 0.545660 | 3_3:+51245417 | Msa0456950:CDS |
| TTTGAATTCAAGGTGATCGC+CGG | 0.546998 | 3_3:-51242673 | None:intergenic |
| GGCCCTGCTGCATCTGAAAG+AGG | 0.548861 | 3_3:-51242894 | None:intergenic |
| GGAAGAAGAATGAATCCTCT+TGG | 0.551510 | 3_3:-51242308 | None:intergenic |
| CCATTTGGTGTCCAATTCAA+GGG | 0.551707 | 3_3:-51242624 | None:intergenic |
| ATATAGTCGGAAGTGTTCAT+GGG | 0.552947 | 3_3:+51244650 | Msa0456950:CDS |
| ACACCCCTCACCTTACAAGT+TGG | 0.552992 | 3_3:+51245722 | Msa0456950:three_prime_UTR |
| AAACAGACACGAGACGGTGA+TGG | 0.555875 | 3_3:-51242355 | None:intergenic |
| TAATAATAATGATGATGAGA+AGG | 0.558681 | 3_3:+51242854 | Msa0456950:CDS |
| ATGTTATCTTCATCCTATGT+GGG | 0.559241 | 3_3:-51245677 | None:intergenic |
| AAAATAACCTTGAGGTCATG+TGG | 0.562951 | 3_3:-51245250 | None:intergenic |
| ACCGTTCAGTTGAACTTGAG+TGG | 0.563774 | 3_3:+51242178 | Msa0456950:five_prime_UTR |
| GTGAATTCTGCCTTGAATGA+AGG | 0.564824 | 3_3:-51245175 | None:intergenic |
| CCAGGATGGCACTTTACACT+GGG | 0.568160 | 3_3:+51242710 | Msa0456950:CDS |
| ATACCTAGGTTGGGTTTGGG+TGG | 0.568602 | 3_3:-51242390 | None:intergenic |
| ATACTCTTCTATCTATCTGA+AGG | 0.573630 | 3_3:+51244696 | Msa0456950:CDS |
| AGACACGAGACGGTGATGGA+TGG | 0.574319 | 3_3:-51242351 | None:intergenic |
| TGACGTGAATATCACAGAGC+TGG | 0.575642 | 3_3:+51245561 | Msa0456950:CDS |
| AAAACCAACTTGTAAGGTGA+GGG | 0.578095 | 3_3:-51245726 | None:intergenic |
| CTCCTCTTTCAGATGCAGCA+GGG | 0.578168 | 3_3:+51242892 | Msa0456950:CDS |
| CTTCCACCCAAACCCAACCT+AGG | 0.582255 | 3_3:+51242387 | Msa0456950:CDS |
| TAATAATGATGATGAGAAGG+AGG | 0.584313 | 3_3:+51242857 | Msa0456950:CDS |
| AACAAGCTTCACCGTAACGC+TGG | 0.586434 | 3_3:+51245403 | Msa0456950:CDS |
| CAAAACCAACTTGTAAGGTG+AGG | 0.586682 | 3_3:-51245727 | None:intergenic |
| ATGTTTCACTATATTCTCCA+GGG | 0.588007 | 3_3:-51245477 | None:intergenic |
| CAAAGGACTTGGGATACCTC+AGG | 0.590864 | 3_3:+51242993 | Msa0456950:CDS |
| TTCAAGGGGATCAAAGCGCA+AGG | 0.595435 | 3_3:+51243042 | Msa0456950:CDS |
| CACTCTCCTACAAAAGGACT+CGG | 0.595482 | 3_3:-51242915 | None:intergenic |
| CTTATGCAGTGGATAAACAC+AGG | 0.598140 | 3_3:+51244801 | Msa0456950:intron |
| TGACATCCCACATGACCTCA+AGG | 0.598443 | 3_3:+51245243 | Msa0456950:CDS |
| TGCGACTTCCATTTCAACGC+CGG | 0.599134 | 3_3:+51242654 | Msa0456950:CDS |
| AGGCAGAAACAGACACGAGA+CGG | 0.601097 | 3_3:-51242361 | None:intergenic |
| CCATGAAACACAAAGGACTT+GGG | 0.601641 | 3_3:+51242983 | Msa0456950:CDS |
| CACGAGACGGTGATGGATGG+AGG | 0.601952 | 3_3:-51242348 | None:intergenic |
| AACTGAACGGTGGTGTGGTG+TGG | 0.607662 | 3_3:-51242166 | None:intergenic |
| TTCATCCTCCCAGTCCCAGA+AGG | 0.610101 | 3_3:+51242249 | Msa0456950:CDS |
| TTTCAGCATGCCTATTGGGA+CGG | 0.611247 | 3_3:-51244857 | None:intergenic |
| TTCACCATTGTCCACCAGGA+TGG | 0.611719 | 3_3:+51242696 | Msa0456950:CDS |
| GCTAAAATCACAAAGAACCC+TGG | 0.612235 | 3_3:+51245460 | Msa0456950:CDS |
| AACGGTGGTGTGGTGTGGTG+TGG | 0.619518 | 3_3:-51242161 | None:intergenic |
| GATCTTGTACGTGATATAGT+CGG | 0.620324 | 3_3:+51244637 | Msa0456950:CDS |
| CAGCATGCCTATTGGGACGG+TGG | 0.622344 | 3_3:-51244854 | None:intergenic |
| AGAGCAACATACAAGTCGAA+AGG | 0.623148 | 3_3:+51244905 | Msa0456950:CDS |
| TCCCCTTGAACAAACTTGAG+AGG | 0.625441 | 3_3:-51243029 | None:intergenic |
| TCATGGGGAAGATCAATTGG+AGG | 0.627527 | 3_3:+51244666 | Msa0456950:CDS |
| GCCACTCAAGTTCAACTGAA+CGG | 0.633809 | 3_3:-51242179 | None:intergenic |
| AAATAACCTTGAGGTCATGT+GGG | 0.642385 | 3_3:-51245249 | None:intergenic |
| CCAATTCAAGGGAACATGGG+TGG | 0.646472 | 3_3:-51242613 | None:intergenic |
| GAATTCCTTCTGGGACTGGG+AGG | 0.651260 | 3_3:-51242254 | None:intergenic |
| TGACCTCCATCTTCAAAACA+TGG | 0.654311 | 3_3:-51244831 | None:intergenic |
| AGAAAAGAAAGCATGTGTAG+AGG | 0.655901 | 3_3:+51242050 | Msa0456950:five_prime_UTR |
| AGTGCCATCCTGGTGGACAA+TGG | 0.659130 | 3_3:-51242700 | None:intergenic |
| TTGATCCAAGAAGCACAACA+TGG | 0.661070 | 3_3:-51242569 | None:intergenic |
| AGTGTAAAGTGCCATCCTGG+TGG | 0.661255 | 3_3:-51242707 | None:intergenic |
| TGTCCAATTCAAGGGAACAT+GGG | 0.666516 | 3_3:-51242616 | None:intergenic |
| AGTTCAACTGAACGGTGGTG+TGG | 0.668048 | 3_3:-51242171 | None:intergenic |
| AGGCAAACCTTGAAGACCTG+AGG | 0.673854 | 3_3:-51243009 | None:intergenic |
| ATCAGACCCATGAAACACAA+AGG | 0.676250 | 3_3:+51242976 | Msa0456950:CDS |
| CGGAACCATAATCAGCCAAG+AGG | 0.679755 | 3_3:+51242293 | Msa0456950:CDS |
| AAACCAACTTGTAAGGTGAG+GGG | 0.693343 | 3_3:-51245725 | None:intergenic |
| CGTGTATGGAAAGAAGACAA+AGG | 0.699696 | 3_3:+51242090 | Msa0456950:five_prime_UTR |
| TTATGCAGTGGATAAACACA+GGG | 0.702208 | 3_3:+51244802 | Msa0456950:intron |
| TATAGTCGGAAGTGTTCATG+GGG | 0.710598 | 3_3:+51244651 | Msa0456950:CDS |
| GGGACTGGGAGGATGAACGA+TGG | 0.732469 | 3_3:-51242243 | None:intergenic |
| ACTCAAGTTCAACTGAACGG+TGG | 0.755616 | 3_3:-51242176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATTACCTATAATGT+TGG | + | chr3_3:51243100-51243119 | Msa0456950:intron | 15.0% |
| !! | TATAAAAGAAAAACAATAGT+TGG | - | chr3_3:51243471-51243490 | None:intergenic | 15.0% |
| !! | TTCTTCAAAAAAAAGTAATA+TGG | + | chr3_3:51244027-51244046 | Msa0456950:intron | 15.0% |
| !! | ATGAATAGATATAAATAATG+AGG | - | chr3_3:51244738-51244757 | None:intergenic | 15.0% |
| !! | AAATAAAAATAAATCACATG+TGG | - | chr3_3:51244939-51244958 | None:intergenic | 15.0% |
| !! | AGTGAGTAAGTAATTATTAA+GGG | - | chr3_3:51242451-51242470 | None:intergenic | 20.0% |
| !! | TAGTGAGTAAGTAATTATTA+AGG | - | chr3_3:51242452-51242471 | None:intergenic | 20.0% |
| !!! | TAATAATAATGATGATGAGA+AGG | + | chr3_3:51242854-51242873 | Msa0456950:CDS | 20.0% |
| !! | ATTACATTACACTTAATTCA+TGG | + | chr3_3:51243170-51243189 | Msa0456950:intron | 20.0% |
| !!! | ATTTTTACAAATTACAGTGA+TGG | - | chr3_3:51243736-51243755 | None:intergenic | 20.0% |
| !! | TAAATCATCTTATGGTAAAA+TGG | - | chr3_3:51244287-51244306 | None:intergenic | 20.0% |
| !!! | TAAAATGCCTTTATTTTTTC+CGG | + | chr3_3:51244556-51244575 | Msa0456950:intron | 20.0% |
| !!! | AAACACTGATTAGTTTAAAT+AGG | - | chr3_3:51245037-51245056 | None:intergenic | 20.0% |
| !! | CCTGTATACAAATAAATTTA+TGG | - | chr3_3:51245120-51245139 | None:intergenic | 20.0% |
| !! | CCATAAATTTATTTGTATAC+AGG | + | chr3_3:51245117-51245136 | Msa0456950:intron | 20.0% |
| ! | ATAAAAGAGATATGATACCT+AGG | - | chr3_3:51242407-51242426 | None:intergenic | 25.0% |
| !! | ATTAATGTCTTCTTTGTTGT+TGG | - | chr3_3:51242505-51242524 | None:intergenic | 25.0% |
| ! | TTCTGTTCATTGAAATTCAA+AGG | - | chr3_3:51242831-51242850 | None:intergenic | 25.0% |
| !! | CATACATTTTCCAACATTAT+AGG | - | chr3_3:51243113-51243132 | None:intergenic | 25.0% |
| !!! | CTAATTAGTGGTTTGTTATA+AGG | - | chr3_3:51243331-51243350 | None:intergenic | 25.0% |
| !! | AGTGGTTAAAAGTTGTATTT+TGG | + | chr3_3:51243955-51243974 | Msa0456950:intron | 25.0% |
| ! | AAAAACCATATTTACTGAGA+AGG | - | chr3_3:51243989-51244008 | None:intergenic | 25.0% |
| !! | AGTAAATATGGTTTTTGTTG+TGG | + | chr3_3:51243993-51244012 | Msa0456950:intron | 25.0% |
| !!! | GTAAATATGGTTTTTGTTGT+GGG | + | chr3_3:51243994-51244013 | Msa0456950:intron | 25.0% |
| ! | TTGCATATAATCAATCTCTA+GGG | + | chr3_3:51244182-51244201 | Msa0456950:intron | 25.0% |
| ! | TTAGTGTCAAACTAAATCAT+CGG | - | chr3_3:51244236-51244255 | None:intergenic | 25.0% |
| ! | ACGAGAAATAAATCATCTTA+TGG | - | chr3_3:51244295-51244314 | None:intergenic | 25.0% |
| ! | TGAATAAACAGAACATTATC+CGG | - | chr3_3:51244372-51244391 | None:intergenic | 25.0% |
| ! | TGTTTGAACATAGATTTGTA+AGG | + | chr3_3:51244487-51244506 | Msa0456950:intron | 25.0% |
| !! | ACATTCAAATTTAAAACTGC+AGG | - | chr3_3:51244519-51244538 | None:intergenic | 25.0% |
| ! | TTATTTAAAAAGAAAGCCAC+CGG | - | chr3_3:51244578-51244597 | None:intergenic | 25.0% |
| ! | TGCATAAGATTATCTAAGAA+GGG | - | chr3_3:51244789-51244808 | None:intergenic | 25.0% |
| ! | TCTTATTGCACTTTATTGTT+AGG | + | chr3_3:51245297-51245316 | Msa0456950:intron | 25.0% |
| ! | TATATATACATATGTGTGTG+TGG | - | chr3_3:51245334-51245353 | None:intergenic | 25.0% |
| ! | AGAATATAGTGAAACATTTG+TGG | + | chr3_3:51245483-51245502 | Msa0456950:CDS | 25.0% |
| ! | TTAGATCACCAAGTTGAATT+CGG | + | chr3_3:51242543-51242562 | Msa0456950:CDS | 30.0% |
| CAATGGTGAATTTGAATTCA+AGG | - | chr3_3:51242686-51242705 | None:intergenic | 30.0% | |
| ! | TAATAATGATGATGAGAAGG+AGG | + | chr3_3:51242857-51242876 | Msa0456950:CDS | 30.0% |
| !! | GTTTTAATGACACAAAGATG+TGG | - | chr3_3:51243201-51243220 | None:intergenic | 30.0% |
| AGTCAAGAAAAGCTAATTAG+TGG | - | chr3_3:51243343-51243362 | None:intergenic | 30.0% | |
| TAATAATGTTTGTGCAACCT+GGG | - | chr3_3:51243429-51243448 | None:intergenic | 30.0% | |
| ATAATAATGTTTGTGCAACC+TGG | - | chr3_3:51243430-51243449 | None:intergenic | 30.0% | |
| ! | AATAGTTGGACATTTGTTGA+AGG | - | chr3_3:51243457-51243476 | None:intergenic | 30.0% |
| ATAGTGTTCTCATTAGCAAT+AGG | - | chr3_3:51243543-51243562 | None:intergenic | 30.0% | |
| ATTCATATACACTCAACTTC+TGG | + | chr3_3:51243649-51243668 | Msa0456950:intron | 30.0% | |
| TGATTCAAAGTGACATAATC+TGG | - | chr3_3:51243682-51243701 | None:intergenic | 30.0% | |
| !! | CTGGTTTTTACAGTTAAAGT+TGG | + | chr3_3:51243896-51243915 | Msa0456950:intron | 30.0% |
| !!! | TTAAAAGTTGTATTTTGGCC+TGG | + | chr3_3:51243960-51243979 | Msa0456950:intron | 30.0% |
| CAACAATTGTAGACAAAAAC+AGG | - | chr3_3:51244063-51244082 | None:intergenic | 30.0% | |
| ! | TTTTATATCCAACCGATGAA+GGG | - | chr3_3:51244098-51244117 | None:intergenic | 30.0% |
| ! | TTTTTATATCCAACCGATGA+AGG | - | chr3_3:51244099-51244118 | None:intergenic | 30.0% |
| CTAGAGATTGATTATATGCA+AGG | - | chr3_3:51244183-51244202 | None:intergenic | 30.0% | |
| CTTGCATATAATCAATCTCT+AGG | + | chr3_3:51244181-51244200 | Msa0456950:intron | 30.0% | |
| !! | TATAATCAATCTCTAGGGTT+TGG | + | chr3_3:51244187-51244206 | Msa0456950:intron | 30.0% |
| TAGTGTCAAACTAAATCATC+GGG | - | chr3_3:51244235-51244254 | None:intergenic | 30.0% | |
| TATCAGAAAATTAAGCAACC+CGG | + | chr3_3:51244350-51244369 | Msa0456950:intron | 30.0% | |
| GAATAAACAGAACATTATCC+GGG | - | chr3_3:51244371-51244390 | None:intergenic | 30.0% | |
| ATACTCTTCTATCTATCTGA+AGG | + | chr3_3:51244696-51244715 | Msa0456950:CDS | 30.0% | |
| CTGCATAAGATTATCTAAGA+AGG | - | chr3_3:51244790-51244809 | None:intergenic | 30.0% | |
| TCTTAGATAATCTTATGCAG+TGG | + | chr3_3:51244790-51244809 | Msa0456950:intron | 30.0% | |
| !!! | CAAATACCATGTTTTGAAGA+TGG | + | chr3_3:51244825-51244844 | Msa0456950:CDS | 30.0% |
| TAGGCAATTCAAAATCTGAT+GGG | - | chr3_3:51245018-51245037 | None:intergenic | 30.0% | |
| ATAGGCAATTCAAAATCTGA+TGG | - | chr3_3:51245019-51245038 | None:intergenic | 30.0% | |
| TCCAAAGTTCATGTACTTTA+GGG | - | chr3_3:51245276-51245295 | None:intergenic | 30.0% | |
| TTCCAAAGTTCATGTACTTT+AGG | - | chr3_3:51245277-51245296 | None:intergenic | 30.0% | |
| ATGTTTCACTATATTCTCCA+GGG | - | chr3_3:51245480-51245499 | None:intergenic | 30.0% | |
| AATGTTTCACTATATTCTCC+AGG | - | chr3_3:51245481-51245500 | None:intergenic | 30.0% | |
| ATGTTATCTTCATCCTATGT+GGG | - | chr3_3:51245680-51245699 | None:intergenic | 30.0% | |
| TATGTTATCTTCATCCTATG+TGG | - | chr3_3:51245681-51245700 | None:intergenic | 30.0% | |
| CATTACAAAACCAACTTGTA+AGG | - | chr3_3:51245735-51245754 | None:intergenic | 30.0% | |
| ! | AGAAAAGAAAGCATGTGTAG+AGG | + | chr3_3:51242050-51242069 | Msa0456950:five_prime_UTR | 35.0% |
| TGAAATGTAATGCACGTGTA+TGG | + | chr3_3:51242076-51242095 | Msa0456950:five_prime_UTR | 35.0% | |
| TTAGGATTCGAATTCCTTCT+GGG | - | chr3_3:51242266-51242285 | None:intergenic | 35.0% | |
| ATTAGGATTCGAATTCCTTC+TGG | - | chr3_3:51242267-51242286 | None:intergenic | 35.0% | |
| GAAGGAATTCGAATCCTAAT+CGG | + | chr3_3:51242267-51242286 | Msa0456950:CDS | 35.0% | |
| ATTCGAATCCTAATCGGAAT+CGG | + | chr3_3:51242273-51242292 | Msa0456950:CDS | 35.0% | |
| GAGGATGATGAAGATAATGA+TGG | - | chr3_3:51242332-51242351 | None:intergenic | 35.0% | |
| AGAGATATGATACCTAGGTT+GGG | - | chr3_3:51242402-51242421 | None:intergenic | 35.0% | |
| AAGAGATATGATACCTAGGT+TGG | - | chr3_3:51242403-51242422 | None:intergenic | 35.0% | |
| ! | ATTTTCAGACCATTGCCAAA+TGG | + | chr3_3:51242775-51242794 | Msa0456950:CDS | 35.0% |
| !! | TGTTTTGTTCCATTTGGCAA+TGG | - | chr3_3:51242787-51242806 | None:intergenic | 35.0% |
| ! | TTTGTTATAAGGTACACGGT+GGG | - | chr3_3:51243320-51243339 | None:intergenic | 35.0% |
| !! | GTGGTTTGTTATAAGGTACA+CGG | - | chr3_3:51243324-51243343 | None:intergenic | 35.0% |
| AATAATGTTTGTGCAACCTG+GGG | - | chr3_3:51243428-51243447 | None:intergenic | 35.0% | |
| !! | CTTGCTATTGCTCTCATAAA+AGG | + | chr3_3:51243621-51243640 | Msa0456950:intron | 35.0% |
| CGTCTTTCTTCTTTGCATTA+TGG | + | chr3_3:51243706-51243725 | Msa0456950:intron | 35.0% | |
| TGTAAAAATGTCTAGTCCTC+TGG | + | chr3_3:51243747-51243766 | Msa0456950:intron | 35.0% | |
| !! | GTTTTTGTTGTGGGCTAATT+TGG | + | chr3_3:51244003-51244022 | Msa0456950:intron | 35.0% |
| TTTATATCCAACCGATGAAG+GGG | - | chr3_3:51244097-51244116 | None:intergenic | 35.0% | |
| ATAAAAAACGCCTTCTTCCA+TGG | + | chr3_3:51244112-51244131 | Msa0456950:intron | 35.0% | |
| GAACATTTGTAGAATCACCA+TGG | - | chr3_3:51244132-51244151 | None:intergenic | 35.0% | |
| TCTACAAATGTTCACAAGCA+TGG | + | chr3_3:51244139-51244158 | Msa0456950:intron | 35.0% | |
| TATGCAAGGATTTGTGAAGA+CGG | - | chr3_3:51244169-51244188 | None:intergenic | 35.0% | |
| !!! | ATAAAGGCATTTTACAGCAG+TGG | - | chr3_3:51244550-51244569 | None:intergenic | 35.0% |
| !!! | AATGCCTTTATTTTTTCCGG+TGG | + | chr3_3:51244559-51244578 | Msa0456950:intron | 35.0% |
| AAAGCCACCGGAAAAAATAA+AGG | - | chr3_3:51244566-51244585 | None:intergenic | 35.0% | |
| GATCTTGTACGTGATATAGT+CGG | + | chr3_3:51244637-51244656 | Msa0456950:CDS | 35.0% | |
| !! | ATATAGTCGGAAGTGTTCAT+GGG | + | chr3_3:51244650-51244669 | Msa0456950:CDS | 35.0% |
| TTATGCAGTGGATAAACACA+GGG | + | chr3_3:51244802-51244821 | Msa0456950:intron | 35.0% | |
| !!! | ATACCATGTTTTGAAGATGG+AGG | + | chr3_3:51244828-51244847 | Msa0456950:CDS | 35.0% |
| GAAATTTCAGCATGCCTATT+GGG | - | chr3_3:51244864-51244883 | None:intergenic | 35.0% | |
| TGAAATTTCAGCATGCCTAT+TGG | - | chr3_3:51244865-51244884 | None:intergenic | 35.0% | |
| ATAGGCATGCTGAAATTTCA+AGG | + | chr3_3:51244865-51244884 | Msa0456950:CDS | 35.0% | |
| GGAGTAATAGAGAACCAAAA+AGG | - | chr3_3:51244985-51245004 | None:intergenic | 35.0% | |
| !! | AATCTGATGGGCTTAACTAA+TGG | - | chr3_3:51245006-51245025 | None:intergenic | 35.0% |
| ! | ATATCTCTGATTCGAGTTAG+AGG | - | chr3_3:51245211-51245230 | None:intergenic | 35.0% |
| AAATAACCTTGAGGTCATGT+GGG | - | chr3_3:51245252-51245271 | None:intergenic | 35.0% | |
| AAAATAACCTTGAGGTCATG+TGG | - | chr3_3:51245253-51245272 | None:intergenic | 35.0% | |
| ! | CTTTAGGGAAAATAACCTTG+AGG | - | chr3_3:51245261-51245280 | None:intergenic | 35.0% |
| TCCCTAAAGTACATGAACTT+TGG | + | chr3_3:51245272-51245291 | Msa0456950:intron | 35.0% | |
| !! | CTTTGTGATTTTAGCAAGCA+TGG | - | chr3_3:51245455-51245474 | None:intergenic | 35.0% |
| CTCAAAGACTTCTTTAATGC+TGG | + | chr3_3:51245532-51245551 | Msa0456950:CDS | 35.0% | |
| AAAACCAACTTGTAAGGTGA+GGG | - | chr3_3:51245729-51245748 | None:intergenic | 35.0% | |
| CGTGTATGGAAAGAAGACAA+AGG | + | chr3_3:51242090-51242109 | Msa0456950:five_prime_UTR | 40.0% | |
| TTATGGTTCCGATTCCGATT+AGG | - | chr3_3:51242284-51242303 | None:intergenic | 40.0% | |
| TGAATCCTCTTGGCTGATTA+TGG | - | chr3_3:51242301-51242320 | None:intergenic | 40.0% | |
| GGAAGAAGAATGAATCCTCT+TGG | - | chr3_3:51242311-51242330 | None:intergenic | 40.0% | |
| ! | ATGATACCTAGGTTGGGTTT+GGG | - | chr3_3:51242396-51242415 | None:intergenic | 40.0% |
| ! | TATGATACCTAGGTTGGGTT+TGG | - | chr3_3:51242397-51242416 | None:intergenic | 40.0% |
| TGCTCGATTCATGTGGAAAA+AGG | + | chr3_3:51242472-51242491 | Msa0456950:intron | 40.0% | |
| ! | TTGATCCAAGAAGCACAACA+TGG | - | chr3_3:51242572-51242591 | None:intergenic | 40.0% |
| TCTTGGATCAACCAAACAGT+TGG | + | chr3_3:51242581-51242600 | Msa0456950:CDS | 40.0% | |
| CTTGGATCAACCAAACAGTT+GGG | + | chr3_3:51242582-51242601 | Msa0456950:CDS | 40.0% | |
| TGTCCAATTCAAGGGAACAT+GGG | - | chr3_3:51242619-51242638 | None:intergenic | 40.0% | |
| !! | CCATTTGGTGTCCAATTCAA+GGG | - | chr3_3:51242627-51242646 | None:intergenic | 40.0% |
| !! | ACCATTTGGTGTCCAATTCA+AGG | - | chr3_3:51242628-51242647 | None:intergenic | 40.0% |
| TGAATTGGACACCAAATGGT+TGG | + | chr3_3:51242628-51242647 | Msa0456950:CDS | 40.0% | |
| GAATTGGACACCAAATGGTT+GGG | + | chr3_3:51242629-51242648 | Msa0456950:CDS | 40.0% | |
| TTTGAATTCAAGGTGATCGC+CGG | - | chr3_3:51242676-51242695 | None:intergenic | 40.0% | |
| GTATTAAACTTGCCCAATGC+TGG | + | chr3_3:51242750-51242769 | Msa0456950:CDS | 40.0% | |
| GTCTGAAAATGACCAGCATT+GGG | - | chr3_3:51242765-51242784 | None:intergenic | 40.0% | |
| !! | CTGGTGTGTTTTGTTCCATT+TGG | - | chr3_3:51242793-51242812 | None:intergenic | 40.0% |
| GAACAAAACACACCAGACTA+TGG | + | chr3_3:51242797-51242816 | Msa0456950:CDS | 40.0% | |
| AAGGAAGTAACTCCATAGTC+TGG | - | chr3_3:51242812-51242831 | None:intergenic | 40.0% | |
| TTTGTGTTTCATGGGTCTGA+TGG | - | chr3_3:51242977-51242996 | None:intergenic | 40.0% | |
| ATCAGACCCATGAAACACAA+AGG | + | chr3_3:51242976-51242995 | Msa0456950:CDS | 40.0% | |
| CCAAGTCCTTTGTGTTTCAT+GGG | - | chr3_3:51242985-51243004 | None:intergenic | 40.0% | |
| CCATGAAACACAAAGGACTT+GGG | + | chr3_3:51242983-51243002 | Msa0456950:CDS | 40.0% | |
| ! | TTGCCTCTCAAGTTTGTTCA+AGG | + | chr3_3:51243026-51243045 | Msa0456950:CDS | 40.0% |
| ! | TGCCTCTCAAGTTTGTTCAA+GGG | + | chr3_3:51243027-51243046 | Msa0456950:CDS | 40.0% |
| TTGTTATAAGGTACACGGTG+GGG | - | chr3_3:51243319-51243338 | None:intergenic | 40.0% | |
| !! | GTTTGTTATAAGGTACACGG+TGG | - | chr3_3:51243321-51243340 | None:intergenic | 40.0% |
| CTAGATCAACCCATGTTTAG+CGG | + | chr3_3:51243361-51243380 | Msa0456950:intron | 40.0% | |
| ATGATAGCACCGCTAAACAT+GGG | - | chr3_3:51243373-51243392 | None:intergenic | 40.0% | |
| GTTCTCATTAGCAATAGGAG+AGG | - | chr3_3:51243538-51243557 | None:intergenic | 40.0% | |
| CTAGACTCAACTAGCAATGT+TGG | - | chr3_3:51243600-51243619 | None:intergenic | 40.0% | |
| !! | GACCTAGTTCTTTTTCTTCG+TGG | + | chr3_3:51243852-51243871 | Msa0456950:intron | 40.0% |
| CTCCACGAAGAAAAAGAACT+AGG | - | chr3_3:51243857-51243876 | None:intergenic | 40.0% | |
| !! | CTAGTTCTTTTTCTTCGTGG+AGG | + | chr3_3:51243855-51243874 | Msa0456950:intron | 40.0% |
| GATTGTAGTTAGCTGACAAC+TGG | + | chr3_3:51243877-51243896 | Msa0456950:intron | 40.0% | |
| !! | ACAGTTAAAGTTGGCCTTCA+TGG | + | chr3_3:51243905-51243924 | Msa0456950:intron | 40.0% |
| !! | TATTTACTGAGAAGGTGTCC+AGG | - | chr3_3:51243981-51244000 | None:intergenic | 40.0% |
| GGACACCTTCTCAGTAAATA+TGG | + | chr3_3:51243981-51244000 | Msa0456950:intron | 40.0% | |
| TGTAGAATCACCATGGAAGA+AGG | - | chr3_3:51244125-51244144 | None:intergenic | 40.0% | |
| GACATTGTAGTCACTAGTAC+TGG | + | chr3_3:51244325-51244344 | Msa0456950:intron | 40.0% | |
| !! | GATATAGTCGGAAGTGTTCA+TGG | + | chr3_3:51244649-51244668 | Msa0456950:CDS | 40.0% |
| !! | TATAGTCGGAAGTGTTCATG+GGG | + | chr3_3:51244651-51244670 | Msa0456950:CDS | 40.0% |
| TGTTCATGGGGAAGATCAAT+TGG | + | chr3_3:51244663-51244682 | Msa0456950:CDS | 40.0% | |
| CTTATGCAGTGGATAAACAC+AGG | + | chr3_3:51244801-51244820 | Msa0456950:intron | 40.0% | |
| TGACCTCCATCTTCAAAACA+TGG | - | chr3_3:51244834-51244853 | None:intergenic | 40.0% | |
| AGAGCAACATACAAGTCGAA+AGG | + | chr3_3:51244905-51244924 | Msa0456950:CDS | 40.0% | |
| ! | ATGTTGAAGTGCAGCCTTTT+TGG | + | chr3_3:51244968-51244987 | Msa0456950:intron | 40.0% |
| TCCATGTTTGCCTTCATTCA+AGG | + | chr3_3:51245165-51245184 | Msa0456950:CDS | 40.0% | |
| GTGAATTCTGCCTTGAATGA+AGG | - | chr3_3:51245178-51245197 | None:intergenic | 40.0% | |
| GCTAAAATCACAAAGAACCC+TGG | + | chr3_3:51245460-51245479 | Msa0456950:CDS | 40.0% | |
| AAGACTTCTTTAATGCTGGC+AGG | + | chr3_3:51245536-51245555 | Msa0456950:CDS | 40.0% | |
| AACTTCCAAGAGAGAGTGAT+TGG | - | chr3_3:51245640-51245659 | None:intergenic | 40.0% | |
| CACTCTCTCTTGGAAGTTAT+TGG | + | chr3_3:51245642-51245661 | Msa0456950:three_prime_UTR | 40.0% | |
| AAACCAACTTGTAAGGTGAG+GGG | - | chr3_3:51245728-51245747 | None:intergenic | 40.0% | |
| CAAAACCAACTTGTAAGGTG+AGG | - | chr3_3:51245730-51245749 | None:intergenic | 40.0% | |
| ACTCAAGTTCAACTGAACGG+TGG | - | chr3_3:51242179-51242198 | None:intergenic | 45.0% | |
| ACCGTTCAGTTGAACTTGAG+TGG | + | chr3_3:51242178-51242197 | Msa0456950:five_prime_UTR | 45.0% | |
| GCCACTCAAGTTCAACTGAA+CGG | - | chr3_3:51242182-51242201 | None:intergenic | 45.0% | |
| !! | TTCGAATTCCTTCTGGGACT+GGG | - | chr3_3:51242260-51242279 | None:intergenic | 45.0% |
| !! | ATTCGAATTCCTTCTGGGAC+TGG | - | chr3_3:51242261-51242280 | None:intergenic | 45.0% |
| CTCACTATGCTCGATTCATG+TGG | + | chr3_3:51242465-51242484 | Msa0456950:intron | 45.0% | |
| CATGGTCACCGAATTCAACT+TGG | - | chr3_3:51242554-51242573 | None:intergenic | 45.0% | |
| GTGTCCAATTCAAGGGAACA+TGG | - | chr3_3:51242620-51242639 | None:intergenic | 45.0% | |
| CCCTTGAATTGGACACCAAA+TGG | + | chr3_3:51242624-51242643 | Msa0456950:CDS | 45.0% | |
| AAGTCGCATACCCAACCATT+TGG | - | chr3_3:51242642-51242661 | None:intergenic | 45.0% | |
| CAAATTCACCATTGTCCACC+AGG | + | chr3_3:51242692-51242711 | Msa0456950:CDS | 45.0% | |
| GGTCTGAAAATGACCAGCAT+TGG | - | chr3_3:51242766-51242785 | None:intergenic | 45.0% | |
| CACTCTCCTACAAAAGGACT+CGG | - | chr3_3:51242918-51242937 | None:intergenic | 45.0% | |
| CCCATGAAACACAAAGGACT+TGG | + | chr3_3:51242982-51243001 | Msa0456950:CDS | 45.0% | |
| CCCAAGTCCTTTGTGTTTCA+TGG | - | chr3_3:51242986-51243005 | None:intergenic | 45.0% | |
| ! | GCCTCTCAAGTTTGTTCAAG+GGG | + | chr3_3:51243028-51243047 | Msa0456950:CDS | 45.0% |
| TCCCCTTGAACAAACTTGAG+AGG | - | chr3_3:51243032-51243051 | None:intergenic | 45.0% | |
| ATCAAAGCGCAAGGAATTGG+TGG | + | chr3_3:51243051-51243070 | Msa0456950:CDS | 45.0% | |
| GACCCTCATTTGTTCATACC+CGG | + | chr3_3:51243290-51243309 | Msa0456950:intron | 45.0% | |
| TGCCGGGTATGAACAAATGA+GGG | - | chr3_3:51243295-51243314 | None:intergenic | 45.0% | |
| CATGATAGCACCGCTAAACA+TGG | - | chr3_3:51243374-51243393 | None:intergenic | 45.0% | |
| GAGATGCAAAAGCAACGTGT+AGG | - | chr3_3:51243402-51243421 | None:intergenic | 45.0% | |
| GTAACCTCCACCATTACCTT+TGG | + | chr3_3:51243504-51243523 | Msa0456950:intron | 45.0% | |
| ATTAGCAATAGGAGAGGAGG+TGG | - | chr3_3:51243532-51243551 | None:intergenic | 45.0% | |
| CTCATTAGCAATAGGAGAGG+AGG | - | chr3_3:51243535-51243554 | None:intergenic | 45.0% | |
| TCAACTAGCAATGTTGGAGC+TGG | - | chr3_3:51243594-51243613 | None:intergenic | 45.0% | |
| GGCATGAATGCAACTAATCG+TGG | - | chr3_3:51243812-51243831 | None:intergenic | 45.0% | |
| ! | CATTCATGCCTTTTGAGCAG+CGG | + | chr3_3:51243822-51243841 | Msa0456950:intron | 45.0% |
| GGCAGTCAATCTTTCCATGA+AGG | - | chr3_3:51243922-51243941 | None:intergenic | 45.0% | |
| TGGAAAGATTGACTGCCTCA+AGG | + | chr3_3:51243925-51243944 | Msa0456950:intron | 45.0% | |
| TTTGCCATTGACCCCTTCAT+CGG | + | chr3_3:51244083-51244102 | Msa0456950:intron | 45.0% | |
| TCATGGGGAAGATCAATTGG+AGG | + | chr3_3:51244666-51244685 | Msa0456950:CDS | 45.0% | |
| TTTCAGCATGCCTATTGGGA+CGG | - | chr3_3:51244860-51244879 | None:intergenic | 45.0% | |
| CTGCACTTCAACATCAGTGT+TGG | - | chr3_3:51244962-51244981 | None:intergenic | 45.0% | |
| GCCTTGAATGAAGGCAAACA+TGG | - | chr3_3:51245169-51245188 | None:intergenic | 45.0% | |
| ! | GGTCATGTGGGATGTCATTT+CGG | - | chr3_3:51245240-51245259 | None:intergenic | 45.0% |
| TCTGTAGCAACCAAGTCTTC+AGG | - | chr3_3:51245430-51245449 | None:intergenic | 45.0% | |
| TGACGTGAATATCACAGAGC+TGG | + | chr3_3:51245561-51245580 | Msa0456950:CDS | 45.0% | |
| GTCTTCCAATCACTCTCTCT+TGG | + | chr3_3:51245632-51245651 | Msa0456950:three_prime_UTR | 45.0% | |
| GAAAAACCCAAGTCCCACAT+AGG | + | chr3_3:51245664-51245683 | Msa0456950:three_prime_UTR | 45.0% | |
| CTTCATCCTATGTGGGACTT+GGG | - | chr3_3:51245673-51245692 | None:intergenic | 45.0% | |
| TCTTCATCCTATGTGGGACT+TGG | - | chr3_3:51245674-51245693 | None:intergenic | 45.0% | |
| !!! | ATGAATTATAAATTTTATAT+CGG | - | chr3_3:51244426-51244445 | None:intergenic | 5.0% |
| AGTTCAACTGAACGGTGGTG+TGG | - | chr3_3:51242174-51242193 | None:intergenic | 50.0% | |
| CGGAACCATAATCAGCCAAG+AGG | + | chr3_3:51242293-51242312 | Msa0456950:CDS | 50.0% | |
| AAACAGACACGAGACGGTGA+TGG | - | chr3_3:51242358-51242377 | None:intergenic | 50.0% | |
| AGGCAGAAACAGACACGAGA+CGG | - | chr3_3:51242364-51242383 | None:intergenic | 50.0% | |
| ! | ATACCTAGGTTGGGTTTGGG+TGG | - | chr3_3:51242393-51242412 | None:intergenic | 50.0% |
| GGTGACCATGTTGTGCTTCT+TGG | + | chr3_3:51242564-51242583 | Msa0456950:CDS | 50.0% | |
| CCAATTCAAGGGAACATGGG+TGG | - | chr3_3:51242616-51242635 | None:intergenic | 50.0% | |
| CCACCCATGTTCCCTTGAAT+TGG | + | chr3_3:51242613-51242632 | Msa0456950:CDS | 50.0% | |
| TGCGACTTCCATTTCAACGC+CGG | + | chr3_3:51242654-51242673 | Msa0456950:CDS | 50.0% | |
| TTCACCATTGTCCACCAGGA+TGG | + | chr3_3:51242696-51242715 | Msa0456950:CDS | 50.0% | |
| ! | AGTGTAAAGTGCCATCCTGG+TGG | - | chr3_3:51242710-51242729 | None:intergenic | 50.0% |
| ACCAGGATGGCACTTTACAC+TGG | + | chr3_3:51242709-51242728 | Msa0456950:CDS | 50.0% | |
| CCAGGATGGCACTTTACACT+GGG | + | chr3_3:51242710-51242729 | Msa0456950:CDS | 50.0% | |
| GGCACTTTACACTGGGAATC+TGG | + | chr3_3:51242717-51242736 | Msa0456950:CDS | 50.0% | |
| CTCCTCTTTCAGATGCAGCA+GGG | + | chr3_3:51242892-51242911 | Msa0456950:CDS | 50.0% | |
| ! | CGAGTCCTTTTGTAGGAGAG+TGG | + | chr3_3:51242916-51242935 | Msa0456950:CDS | 50.0% |
| CCTTGCCACTCTCCTACAAA+AGG | - | chr3_3:51242924-51242943 | None:intergenic | 50.0% | |
| ! | CCTTTTGTAGGAGAGTGGCA+AGG | + | chr3_3:51242921-51242940 | Msa0456950:CDS | 50.0% |
| TTCATGGGTCTGATGGTCGT+TGG | - | chr3_3:51242970-51242989 | None:intergenic | 50.0% | |
| CAAAGGACTTGGGATACCTC+AGG | + | chr3_3:51242993-51243012 | Msa0456950:CDS | 50.0% | |
| TGGGATACCTCAGGTCTTCA+AGG | + | chr3_3:51243002-51243021 | Msa0456950:CDS | 50.0% | |
| AGGCAAACCTTGAAGACCTG+AGG | - | chr3_3:51243012-51243031 | None:intergenic | 50.0% | |
| TTCAAGGGGATCAAAGCGCA+AGG | + | chr3_3:51243042-51243061 | Msa0456950:CDS | 50.0% | |
| GGGATCAAAGCGCAAGGAAT+TGG | + | chr3_3:51243048-51243067 | Msa0456950:CDS | 50.0% | |
| CGCAAGGAATTGGTGGAGAA+AGG | + | chr3_3:51243058-51243077 | Msa0456950:CDS | 50.0% | |
| CTGCCGGGTATGAACAAATG+AGG | - | chr3_3:51243296-51243315 | None:intergenic | 50.0% | |
| !! | GTTGGAGCTGGTGATGGAAT+TGG | - | chr3_3:51243582-51243601 | None:intergenic | 50.0% |
| AGCAATGTTGGAGCTGGTGA+TGG | - | chr3_3:51243588-51243607 | None:intergenic | 50.0% | |
| TCTAGTCCTCTGGCTACAAG+CGG | + | chr3_3:51243757-51243776 | Msa0456950:intron | 50.0% | |
| AGCGGCACATTATCCCATCA+TGG | + | chr3_3:51243775-51243794 | Msa0456950:intron | 50.0% | |
| GCGGCACATTATCCCATCAT+GGG | + | chr3_3:51243776-51243795 | Msa0456950:intron | 50.0% | |
| GCACATTATCCCATCATGGG+TGG | + | chr3_3:51243779-51243798 | Msa0456950:intron | 50.0% | |
| TAACCACTAGACGAGCCTTG+AGG | - | chr3_3:51243943-51243962 | None:intergenic | 50.0% | |
| TGACATCCCACATGACCTCA+AGG | + | chr3_3:51245243-51245262 | Msa0456950:CDS | 50.0% | |
| AACAAGCTTCACCGTAACGC+TGG | + | chr3_3:51245403-51245422 | Msa0456950:CDS | 50.0% | |
| AGTCTTCAGGACCAGCGTTA+CGG | - | chr3_3:51245417-51245436 | None:intergenic | 50.0% | |
| TAACGCTGGTCCTGAAGACT+TGG | + | chr3_3:51245417-51245436 | Msa0456950:CDS | 50.0% | |
| ACACCCCTCACCTTACAAGT+TGG | + | chr3_3:51245722-51245741 | Msa0456950:three_prime_UTR | 50.0% | |
| AACTGAACGGTGGTGTGGTG+TGG | - | chr3_3:51242169-51242188 | None:intergenic | 55.0% | |
| TTCATCCTCCCAGTCCCAGA+AGG | + | chr3_3:51242249-51242268 | Msa0456950:CDS | 55.0% | |
| !! | GAATTCCTTCTGGGACTGGG+AGG | - | chr3_3:51242257-51242276 | None:intergenic | 55.0% |
| !! | AGACACGAGACGGTGATGGA+TGG | - | chr3_3:51242354-51242373 | None:intergenic | 55.0% |
| TTGGGTTTGGGTGGAAGAGG+AGG | - | chr3_3:51242384-51242403 | None:intergenic | 55.0% | |
| AGGTTGGGTTTGGGTGGAAG+AGG | - | chr3_3:51242387-51242406 | None:intergenic | 55.0% | |
| CTTCCACCCAAACCCAACCT+AGG | + | chr3_3:51242387-51242406 | Msa0456950:CDS | 55.0% | |
| CAACCAAACAGTTGGGCTCC+TGG | + | chr3_3:51242589-51242608 | Msa0456950:CDS | 55.0% | |
| ! | AGTGCCATCCTGGTGGACAA+TGG | - | chr3_3:51242703-51242722 | None:intergenic | 55.0% |
| ! | CCCAGTGTAAAGTGCCATCC+TGG | - | chr3_3:51242713-51242732 | None:intergenic | 55.0% |
| GCTCCTCTTTCAGATGCAGC+AGG | + | chr3_3:51242891-51242910 | Msa0456950:CDS | 55.0% | |
| ! | GCTTTTGCATCTCAGTCCCC+AGG | + | chr3_3:51243409-51243428 | Msa0456950:intron | 55.0% |
| ! | GGCTCCAAAGGTAATGGTGG+AGG | - | chr3_3:51243511-51243530 | None:intergenic | 55.0% |
| ! | GGTGGCTCCAAAGGTAATGG+TGG | - | chr3_3:51243514-51243533 | None:intergenic | 55.0% |
| GGAGGTGGCTCCAAAGGTAA+TGG | - | chr3_3:51243517-51243536 | None:intergenic | 55.0% | |
| !! | AATGTGCCGCTTGTAGCCAG+AGG | - | chr3_3:51243766-51243785 | None:intergenic | 55.0% |
| !! | GGCTAGTCTCCACCCATGAT+GGG | - | chr3_3:51243791-51243810 | None:intergenic | 55.0% |
| !! | TGGCTAGTCTCCACCCATGA+TGG | - | chr3_3:51243792-51243811 | None:intergenic | 55.0% |
| CTTGCATGCCGCTGCTCAAA+AGG | - | chr3_3:51243833-51243852 | None:intergenic | 55.0% | |
| CCAACCGATGAAGGGGTCAA+TGG | - | chr3_3:51244090-51244109 | None:intergenic | 55.0% | |
| CCATTGACCCCTTCATCGGT+TGG | + | chr3_3:51244087-51244106 | Msa0456950:intron | 55.0% | |
| TGGTGTGGTGTGGAGTGGTG+TGG | - | chr3_3:51242149-51242168 | None:intergenic | 60.0% | |
| TGGTGTGGTGTGGTGTGGAG+TGG | - | chr3_3:51242154-51242173 | None:intergenic | 60.0% | |
| TGGTGTGGTGTGGTGTGGTG+TGG | - | chr3_3:51242159-51242178 | None:intergenic | 60.0% | |
| AACGGTGGTGTGGTGTGGTG+TGG | - | chr3_3:51242164-51242183 | None:intergenic | 60.0% | |
| GGGACTGGGAGGATGAACGA+TGG | - | chr3_3:51242246-51242265 | None:intergenic | 60.0% | |
| !! | CACGAGACGGTGATGGATGG+AGG | - | chr3_3:51242351-51242370 | None:intergenic | 60.0% |
| GGTCCAGGAGCCCAACTGTT+TGG | - | chr3_3:51242595-51242614 | None:intergenic | 60.0% | |
| CAAGGGAACATGGGTGGTCC+AGG | - | chr3_3:51242610-51242629 | None:intergenic | 60.0% | |
| ! | GGTGATCGCCGGCGTTGAAA+TGG | - | chr3_3:51242665-51242684 | None:intergenic | 60.0% |
| GGCCCTGCTGCATCTGAAAG+AGG | - | chr3_3:51242897-51242916 | None:intergenic | 60.0% | |
| ! | GCAGGGCCGAGTCCTTTTGT+AGG | + | chr3_3:51242909-51242928 | Msa0456950:CDS | 60.0% |
| AGGAGAGGAGGTGGCTCCAA+AGG | - | chr3_3:51243523-51243542 | None:intergenic | 60.0% | |
| CTGCCTCAAGGCTCGTCTAG+TGG | + | chr3_3:51243937-51243956 | Msa0456950:intron | 60.0% | |
| GAGGTCACCACCGTCCCAAT+AGG | + | chr3_3:51244847-51244866 | Msa0456950:CDS | 60.0% | |
| CAGCATGCCTATTGGGACGG+TGG | - | chr3_3:51244857-51244876 | None:intergenic | 60.0% | |
| AAGGTACACGGTGGGGCTGC+CGG | - | chr3_3:51243312-51243331 | None:intergenic | 65.0% | |
| AGGTACACGGTGGGGCTGCC+GGG | - | chr3_3:51243311-51243330 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 51242015 | 51245758 | 51242015 | ID=Msa0456950;Name=Msa0456950 |
| chr3_3 | mRNA | 51242015 | 51245758 | 51242015 | ID=Msa0456950-mRNA-1;Parent=Msa0456950;Name=Msa0456950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=188|1|0.83|1|1|1|6|158|451 |
| chr3_3 | exon | 51242015 | 51242408 | 51242015 | ID=Msa0456950-mRNA-1:exon:9805;Parent=Msa0456950-mRNA-1 |
| chr3_3 | exon | 51242494 | 51243079 | 51242494 | ID=Msa0456950-mRNA-1:exon:9806;Parent=Msa0456950-mRNA-1 |
| chr3_3 | exon | 51244634 | 51244717 | 51244634 | ID=Msa0456950-mRNA-1:exon:9807;Parent=Msa0456950-mRNA-1 |
| chr3_3 | exon | 51244810 | 51244941 | 51244810 | ID=Msa0456950-mRNA-1:exon:9808;Parent=Msa0456950-mRNA-1 |
| chr3_3 | exon | 51245139 | 51245264 | 51245139 | ID=Msa0456950-mRNA-1:exon:9809;Parent=Msa0456950-mRNA-1 |
| chr3_3 | exon | 51245379 | 51245758 | 51245379 | ID=Msa0456950-mRNA-1:exon:9810;Parent=Msa0456950-mRNA-1 |
| chr3_3 | five_prime_UTR | 51242015 | 51242202 | 51242015 | ID=Msa0456950-mRNA-1:five_prime_utr;Parent=Msa0456950-mRNA-1 |
| chr3_3 | CDS | 51242203 | 51242408 | 51242203 | ID=Msa0456950-mRNA-1:cds;Parent=Msa0456950-mRNA-1 |
| chr3_3 | CDS | 51242494 | 51243079 | 51242494 | ID=Msa0456950-mRNA-1:cds;Parent=Msa0456950-mRNA-1 |
| chr3_3 | CDS | 51244634 | 51244717 | 51244634 | ID=Msa0456950-mRNA-1:cds;Parent=Msa0456950-mRNA-1 |
| chr3_3 | CDS | 51244810 | 51244941 | 51244810 | ID=Msa0456950-mRNA-1:cds;Parent=Msa0456950-mRNA-1 |
| chr3_3 | CDS | 51245139 | 51245264 | 51245139 | ID=Msa0456950-mRNA-1:cds;Parent=Msa0456950-mRNA-1 |
| chr3_3 | CDS | 51245379 | 51245600 | 51245379 | ID=Msa0456950-mRNA-1:cds;Parent=Msa0456950-mRNA-1 |
| chr3_3 | three_prime_UTR | 51245601 | 51245758 | 51245601 | ID=Msa0456950-mRNA-1:three_prime_utr;Parent=Msa0456950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
