AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1074480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074480 MtrunA17_Chr7g0257721 93.373 332 21 1 63 393 1 332 0.0 610
Msa1074480 MtrunA17_Chr1g0173451 62.946 448 149 8 63 505 1 436 0.0 547
Msa1074480 MtrunA17_Chr7g0257701 68.550 407 75 5 63 433 1 390 0.0 517
Msa1074480 MtrunA17_Chr4g0020771 49.015 457 209 8 59 507 4 444 1.68e-141 414
Msa1074480 MtrunA17_Chr3g0089021 49.666 449 208 5 63 505 1 437 1.53e-136 402
Msa1074480 MtrunA17_Chr2g0332801 48.780 369 186 3 136 502 58 425 2.97e-119 358
Msa1074480 MtrunA17_Chr8g0365901 45.652 368 197 3 136 502 64 429 2.27e-115 348
Msa1074480 MtrunA17_Chr6g0449961 44.536 366 185 6 122 477 21 378 2.66e-99 306
Msa1074480 MtrunA17_Chr4g0052621 43.575 358 189 6 136 483 64 418 4.38e-93 291
Msa1074480 MtrunA17_Chr1g0194231 40.833 360 198 6 136 483 80 436 2.01e-89 282
Msa1074480 MtrunA17_Chr5g0413411 40.108 369 191 5 136 477 120 485 1.85e-86 276
Msa1074480 MtrunA17_Chr7g0270361 40.111 359 201 6 136 483 66 421 4.31e-86 273
Msa1074480 MtrunA17_Chr4g0043431 43.631 369 198 9 138 503 36 397 6.82e-85 268
Msa1074480 MtrunA17_Chr2g0332971 41.329 346 195 6 138 477 29 372 4.67e-83 263
Msa1074480 MtrunA17_Chr4g0043661 39.370 381 206 7 138 507 24 390 2.69e-82 261
Msa1074480 MtrunA17_Chr2g0303941 40.541 370 208 7 137 503 28 388 6.58e-82 259
Msa1074480 MtrunA17_Chr5g0413141 39.216 357 205 5 127 477 52 402 1.47e-81 261
Msa1074480 MtrunA17_Chr8g0365891 37.736 371 194 5 138 477 108 472 2.77e-80 259
Msa1074480 MtrunA17_Chr1g0195221 37.275 389 225 10 123 502 24 402 1.77e-79 254
Msa1074480 MtrunA17_Chr4g0067631 39.894 376 211 10 135 502 50 418 2.79e-79 254
Msa1074480 MtrunA17_Chr5g0418411 39.628 376 213 5 124 493 16 383 4.34e-79 253
Msa1074480 MtrunA17_Chr7g0228411 38.035 397 213 10 124 493 27 417 8.37e-79 253
Msa1074480 MtrunA17_Chr3g0121881 39.084 371 211 6 131 495 27 388 1.49e-78 251
Msa1074480 MtrunA17_Chr7g0257711 98.305 118 2 0 394 511 3 120 3.03e-78 240
Msa1074480 MtrunA17_Chr3g0121891 39.946 368 204 7 129 489 21 378 3.28e-78 250
Msa1074480 MtrunA17_Chr8g0348981 41.595 351 190 8 135 477 25 368 6.00e-78 249
Msa1074480 MtrunA17_Chr2g0293681 42.308 338 182 5 126 454 57 390 3.80e-77 248
Msa1074480 MtrunA17_Chr4g0018151 39.837 369 205 5 130 493 71 427 5.59e-77 248
Msa1074480 MtrunA17_Chr7g0230891 40.108 369 209 8 138 503 38 397 1.52e-76 246
Msa1074480 MtrunA17_Chr8g0337571 41.209 364 190 9 136 493 30 375 2.18e-76 245
Msa1074480 MtrunA17_Chr2g0295451 42.623 305 163 8 135 430 51 352 4.47e-74 239
Msa1074480 MtrunA17_Chr8g0337581 39.726 365 195 11 136 493 30 376 1.76e-73 238
Msa1074480 MtrunA17_Chr6g0461181 36.228 403 196 9 138 492 31 420 4.71e-70 230
Msa1074480 MtrunA17_Chr1g0150291 36.119 371 224 8 137 503 45 406 7.93e-70 229
Msa1074480 MtrunA17_Chr1g0150301 37.119 361 214 8 137 493 27 378 2.23e-68 224
Msa1074480 MtrunA17_Chr2g0307811 36.243 378 226 9 136 506 24 393 3.37e-68 224
Msa1074480 MtrunA17_Chr2g0291841 40.000 330 185 9 179 503 38 359 2.11e-64 213
Msa1074480 MtrunA17_Chr2g0307831 33.422 377 238 8 136 506 24 393 2.93e-63 212
Msa1074480 MtrunA17_Chr2g0307821 33.422 377 238 8 136 506 24 393 2.93e-63 212
Msa1074480 MtrunA17_Chr3g0100091 36.658 371 181 6 138 507 31 348 1.62e-62 208
Msa1074480 MtrunA17_Chr5g0447901 38.014 292 173 5 136 423 24 311 1.36e-59 200
Msa1074480 MtrunA17_Chr1g0149241 34.332 367 193 9 133 493 24 348 3.80e-57 194
Msa1074480 MtrunA17_Chr5g0425811 36.727 275 159 7 154 423 2 266 4.32e-54 183
Msa1074480 MtrunA17_Chr8g0336481 39.925 268 145 4 196 461 14 267 2.95e-52 178
Msa1074480 MtrunA17_Chr8g0337521 40.530 264 133 8 136 393 30 275 8.38e-50 172
Msa1074480 MtrunA17_Chr8g0337511 41.152 243 134 3 262 503 5 239 1.26e-49 170
Msa1074480 MtrunA17_Chr3g0093011 40.650 246 141 3 261 502 13 257 3.38e-49 170
Msa1074480 MtrunA17_Chr8g0337601 43.777 233 123 4 262 493 2 227 3.97e-48 166
Msa1074480 MtrunA17_Chr7g0273191 54.745 137 62 0 239 375 2 138 9.17e-45 154
Msa1074480 MtrunA17_Chr8g0337351 48.408 157 80 1 272 427 1 157 4.55e-36 132
Msa1074480 MtrunA17_Chr8g0337551 50.000 130 65 0 264 393 7 136 9.25e-30 114
Msa1074480 MtrunA17_Chr3g0093021 40.800 125 68 5 132 254 22 142 7.01e-22 92.8
Msa1074480 MtrunA17_Chr4g0070281 24.282 383 226 15 136 475 74 435 4.22e-19 90.1
Msa1074480 MtrunA17_Chr8g0337541 37.500 120 66 6 136 249 30 146 1.76e-18 82.4
Msa1074480 MtrunA17_Chr7g0273181 44.792 96 50 2 409 502 1 95 1.94e-18 81.3
Msa1074480 MtrunA17_Chr5g0442221 24.923 325 195 11 137 425 44 355 1.05e-17 85.5
Msa1074480 MtrunA17_Chr2g0295241 25.183 409 242 14 137 503 37 423 1.86e-17 84.7
Msa1074480 MtrunA17_Chr3g0130251 25.304 411 208 16 129 477 69 442 1.58e-16 82.0
Msa1074480 MtrunA17_Chr7g0248451 23.877 423 236 16 137 505 55 445 3.59e-16 80.9
Msa1074480 MtrunA17_Chr4g0067811 23.604 394 246 12 137 492 40 416 3.99e-15 77.8
Msa1074480 MtrunA17_Chr2g0330221 26.875 160 109 4 153 309 39 193 4.12e-15 74.3
Msa1074480 MtrunA17_Chr8g0348491 23.317 416 242 14 137 503 55 442 1.19e-14 76.3
Msa1074480 MtrunA17_Chr1g0193961 27.171 357 207 14 129 447 38 379 1.50e-14 75.9
Msa1074480 MtrunA17_Chr7g0270821 26.570 414 230 21 129 486 38 433 1.60e-14 75.9
Msa1074480 MtrunA17_Chr1g0202641 24.800 375 231 14 139 477 57 416 1.75e-14 76.6
Msa1074480 MtrunA17_Chr1g0202641 25.558 403 243 16 139 502 557 941 9.72e-14 74.3
Msa1074480 MtrunA17_Chr8g0387391 23.404 376 239 14 137 477 44 405 4.19e-14 74.7
Msa1074480 MtrunA17_Chr3g0095221 23.782 349 226 12 109 425 17 357 6.75e-14 73.9
Msa1074480 MtrunA17_Chr7g0255311 23.544 412 253 17 109 481 41 429 9.84e-14 73.6
Msa1074480 MtrunA17_Chr8g0373171 43.529 85 48 0 262 346 7 91 1.11e-13 67.8
Msa1074480 MtrunA17_Chr1g0202651 24.000 375 234 12 139 477 57 416 2.55e-13 72.0
Msa1074480 MtrunA17_Chr1g0202621 24.490 392 228 16 127 477 39 403 3.31e-11 65.5
Msa1074480 MtrunA17_Chr8g0337561 36.634 101 56 3 394 493 8 101 8.20e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074480 AT3G07970.1 51.562 448 197 10 63 504 5 438 2.62e-146 427
Msa1074480 AT3G57510.1 49.103 446 207 8 63 504 1 430 6.24e-142 416
Msa1074480 AT2G41850.1 57.407 378 150 5 132 506 63 432 1.92e-139 409
Msa1074480 AT1G70500.1 41.253 463 239 7 44 505 4 434 4.90e-117 353
Msa1074480 AT1G80170.1 45.063 395 206 5 118 502 27 420 3.19e-116 350
Msa1074480 AT1G23460.2 47.011 368 192 3 136 502 42 407 4.39e-115 347
Msa1074480 AT1G23460.1 46.631 371 195 3 136 505 66 434 7.61e-115 347
Msa1074480 AT5G14650.1 43.567 342 186 5 137 477 51 386 1.10e-91 287
Msa1074480 AT1G56710.1 41.944 360 194 6 136 483 47 403 3.91e-90 283
Msa1074480 AT1G10640.1 41.622 370 186 5 135 477 117 483 1.14e-89 285
Msa1074480 AT1G02460.1 42.424 363 191 7 136 483 88 447 2.46e-89 282
Msa1074480 AT1G60590.1 40.541 370 187 5 138 477 124 490 1.81e-88 281
Msa1074480 AT4G18180.1 39.086 394 213 11 133 505 35 422 1.21e-86 273
Msa1074480 AT3G15720.3 40.872 367 201 6 137 497 23 379 3.66e-86 273
Msa1074480 AT3G15720.1 40.872 367 201 6 137 497 24 380 4.47e-86 273
Msa1074480 AT2G43890.1 40.108 369 209 8 138 503 30 389 7.18e-86 270
Msa1074480 AT1G48100.1 40.223 358 201 5 136 483 79 433 2.82e-85 271
Msa1074480 AT1G80170.2 45.775 284 145 3 118 392 27 310 3.23e-85 266
Msa1074480 AT3G26610.1 42.391 368 196 6 136 491 66 429 7.31e-84 268
Msa1074480 AT4G01890.1 40.650 369 195 9 125 478 59 418 1.03e-83 267
Msa1074480 AT1G05660.1 39.623 371 211 8 136 502 27 388 1.04e-83 265
Msa1074480 AT3G15720.2 40.054 367 201 6 137 497 23 376 4.31e-83 265
Msa1074480 AT1G05650.1 39.353 371 212 8 136 502 27 388 5.35e-83 263
Msa1074480 AT5G44840.1 38.950 362 209 5 135 492 22 375 5.63e-83 263
Msa1074480 AT5G27530.1 41.322 363 192 5 135 493 51 396 3.54e-82 263
Msa1074480 AT1G78400.1 38.874 373 217 7 135 502 33 399 4.91e-82 261
Msa1074480 AT2G43860.1 42.582 364 195 9 137 495 33 387 6.13e-82 261
Msa1074480 AT1G17150.1 40.584 377 210 10 135 504 31 400 7.42e-82 260
Msa1074480 AT2G43880.1 39.295 369 212 8 138 503 32 391 1.40e-81 259
Msa1074480 AT4G35670.1 41.783 359 196 5 138 492 25 374 2.36e-81 259
Msa1074480 AT2G33160.1 40.526 380 212 9 131 502 26 399 3.97e-81 266
Msa1074480 AT5G17200.1 38.642 383 202 6 136 495 38 410 3.16e-79 254
Msa1074480 AT2G43870.1 38.978 372 212 10 138 504 22 383 5.41e-79 252
Msa1074480 AT3G59850.2 40.000 370 208 10 138 502 68 428 1.99e-78 252
Msa1074480 AT3G59850.1 40.000 370 208 10 138 502 24 384 5.78e-78 249
Msa1074480 AT1G02790.1 38.120 383 210 11 136 504 51 420 1.00e-76 248
Msa1074480 AT4G32380.1 38.439 346 200 6 136 475 25 363 2.29e-75 245
Msa1074480 AT1G43080.1 37.368 380 219 10 135 503 29 400 1.60e-74 241
Msa1074480 AT1G43090.1 37.333 375 216 10 135 498 29 395 4.73e-74 241
Msa1074480 AT2G15460.1 37.105 380 220 10 135 503 29 400 2.59e-73 238
Msa1074480 AT4G13760.1 36.842 380 221 10 135 503 29 400 2.82e-73 238
Msa1074480 AT1G43100.1 37.067 375 217 10 135 498 29 395 5.90e-73 238
Msa1074480 AT3G07840.1 35.340 382 229 7 137 510 21 392 7.93e-73 237
Msa1074480 AT2G15450.1 38.109 349 201 8 135 475 29 370 1.21e-71 234
Msa1074480 AT1G65570.1 38.978 372 212 11 137 502 31 393 1.91e-71 233
Msa1074480 AT3G15720.4 39.815 324 180 5 179 497 3 316 4.06e-71 232
Msa1074480 AT2G40310.1 36.148 379 225 9 135 503 29 400 5.42e-71 232
Msa1074480 AT3G07830.1 36.813 364 215 9 150 506 34 389 3.12e-70 230
Msa1074480 AT2G15470.1 36.053 380 224 10 135 503 29 400 6.41e-70 229
Msa1074480 AT3G14040.1 38.070 373 215 10 137 502 71 434 5.42e-69 228
Msa1074480 AT5G44830.1 38.024 334 185 5 163 492 1 316 5.60e-69 224
Msa1074480 AT3G07820.1 36.212 359 217 7 150 503 33 384 1.72e-68 225
Msa1074480 AT1G80140.1 37.910 335 193 7 174 502 7 332 3.00e-68 223
Msa1074480 AT5G48140.1 35.509 383 226 8 137 510 21 391 3.33e-68 224
Msa1074480 AT5G14650.2 43.191 257 142 3 137 392 51 304 7.51e-68 221
Msa1074480 AT3G07850.1 37.802 373 216 10 137 502 70 433 7.64e-68 225
Msa1074480 AT2G43880.2 38.585 311 181 6 133 440 27 330 7.86e-68 221
Msa1074480 AT2G26620.1 36.243 378 224 10 135 503 29 398 5.10e-67 221
Msa1074480 AT4G32370.1 41.639 305 159 9 135 428 32 328 6.42e-66 217
Msa1074480 AT4G32375.1 40.840 262 148 1 214 475 9 263 1.61e-61 207
Msa1074480 AT4G32380.2 34.493 345 174 6 136 475 25 322 1.84e-61 207
Msa1074480 AT4G35670.2 42.279 272 148 2 218 489 2 264 1.56e-60 201
Msa1074480 AT5G39910.1 36.513 304 166 6 136 433 35 317 1.22e-58 199
Msa1074480 AT1G19170.1 24.048 420 249 17 131 503 80 476 3.21e-20 94.0
Msa1074480 AT3G42950.1 24.020 408 250 15 136 502 65 453 2.40e-18 88.2
Msa1074480 AT5G49215.1 27.387 398 226 15 131 487 40 415 4.89e-18 87.0
Msa1074480 AT5G49215.2 27.387 398 226 15 131 487 38 413 5.39e-18 87.0
Msa1074480 AT4G23820.1 26.752 314 192 10 128 410 30 336 1.96e-17 85.1
Msa1074480 AT3G62110.1 27.073 410 246 21 137 508 43 437 4.05e-17 84.3
Msa1074480 AT3G62110.2 27.073 410 246 21 137 508 43 437 4.05e-17 84.3
Msa1074480 AT3G06770.5 25.849 383 217 12 137 475 44 403 1.02e-16 82.8
Msa1074480 AT3G06770.2 25.849 383 217 12 137 475 43 402 1.02e-16 82.8
Msa1074480 AT4G33440.1 23.645 406 210 14 136 470 71 447 1.47e-16 82.8
Msa1074480 AT5G41870.1 25.312 320 202 10 135 424 43 355 3.21e-14 75.1
Msa1074480 AT2G23900.1 24.505 404 249 17 139 503 58 444 1.65e-13 73.2
Msa1074480 AT3G06770.4 26.199 271 169 7 223 475 58 315 5.91e-13 70.9
Msa1074480 AT3G06770.1 26.199 271 169 7 223 475 76 333 1.07e-12 70.1
Msa1074480 AT3G06770.3 26.199 271 169 7 223 475 76 333 1.07e-12 70.1
Msa1074480 AT3G61490.4 23.704 405 254 17 137 503 158 545 4.95e-12 68.9
Msa1074480 AT3G61490.5 23.573 403 257 16 137 503 60 447 5.27e-12 68.6
Msa1074480 AT4G23500.1 24.010 404 254 18 137 503 68 455 6.07e-12 68.2
Msa1074480 AT3G61490.2 23.704 405 254 17 137 503 45 432 8.48e-12 67.8
Msa1074480 AT3G61490.3 23.704 405 254 17 137 503 45 432 8.48e-12 67.8
Msa1074480 AT3G61490.1 23.704 405 254 17 137 503 45 432 8.48e-12 67.8

Find 115 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACAACACATTGCTAATT+TGG 0.092906 7_2:+72308538 None:intergenic
GTGAATGGAGCTAAGATTTC+TGG 0.145479 7_2:-72309654 Msa1074480:CDS
GTAATTCTGATTAATTATTA+TGG 0.180204 7_2:+72308721 None:intergenic
TGGGAAGTAGTATGTGATTC+AGG 0.267912 7_2:-72310927 Msa1074480:CDS
AAATTTAATTGTCAGATATC+TGG 0.291470 7_2:-72310704 Msa1074480:intron
GTTCAGCAACTATTAGTTAA+TGG 0.294863 7_2:-72310611 Msa1074480:CDS
AAATCCAAGGACATCGTTTC+GGG 0.299515 7_2:-72309684 Msa1074480:CDS
ACTACAAATTAATGTTCAAT+TGG 0.300538 7_2:+72308220 None:intergenic
TAATTCTGATTAATTATTAT+GGG 0.319605 7_2:+72308722 None:intergenic
ATTGTTAATGTCAAAGATTA+TGG 0.321747 7_2:-72311303 Msa1074480:CDS
GGTTAAATGCAGGGAGGTTC+AGG 0.324538 7_2:-72308797 Msa1074480:intron
TCACAGAAATATACAAATTA+AGG 0.339722 7_2:-72308333 Msa1074480:exon
CAAATCTAACATATCAGTTC+AGG 0.357768 7_2:-72310835 Msa1074480:intron
ACAAATTCACGTTTCATTCC+AGG 0.368923 7_2:-72310163 Msa1074480:CDS
TTCATATTTATATCCACATA+TGG 0.375972 7_2:+72311726 None:intergenic
ATGAGAGGAGGAATTGTCTT+AGG 0.383327 7_2:+72311514 None:intergenic
TATCTCAGTATTGGAAGCTT+GGG 0.384966 7_2:-72309714 Msa1074480:intron
CAAATTTCAGAACATTGAAA+TGG 0.394222 7_2:-72308759 Msa1074480:CDS
TTTATGGAGCAAACGTTGTA+TGG 0.398145 7_2:-72311838 None:intergenic
AAGATTTCTGGAACTACAAA+TGG 0.398447 7_2:-72309642 Msa1074480:CDS
GTGGACCAGGCCATGGCATC+AGG 0.404513 7_2:-72309815 Msa1074480:intron
ATAGGTATGGAAGTTTAGTT+AGG 0.413211 7_2:+72311759 None:intergenic
GTCAAAGATTATGGAGCTAA+AGG 0.414898 7_2:-72311294 Msa1074480:CDS
AAAATCCAAGGACATCGTTT+CGG 0.414961 7_2:-72309685 Msa1074480:CDS
CAAGGACCAGAGAATCTGAT+TGG 0.415737 7_2:+72310858 None:intergenic
AAAATCTCTAGCTCTATCAT+AGG 0.416238 7_2:-72310045 Msa1074480:CDS
ACATATGGATATATAGATAT+AGG 0.417370 7_2:+72311741 None:intergenic
TCAAAGATTATGGAGCTAAA+GGG 0.422051 7_2:-72311293 Msa1074480:CDS
GATTGTATATCAATTGTAGA+TGG 0.423588 7_2:-72309870 Msa1074480:CDS
CTGATTAATTATTATGGGGT+TGG 0.424803 7_2:+72308727 None:intergenic
ATATGAATTCCATCGGTGTT+AGG 0.428068 7_2:+72310087 None:intergenic
AAAATACAAAAGAACTATAA+TGG 0.434958 7_2:-72311541 Msa1074480:CDS
ACATGTTTCATATTGTTGTA+AGG 0.437458 7_2:-72308141 Msa1074480:three_prime_UTR
AGAGTGTGGTATAGAGACTT+TGG 0.439073 7_2:-72311805 Msa1074480:five_prime_UTR
ATATCTCAGTATTGGAAGCT+TGG 0.439364 7_2:-72309715 Msa1074480:intron
TTCAGGCATTCAAGAAGGCT+TGG 0.439440 7_2:-72310947 Msa1074480:intron
CTCAAACCAATCAGATTCTC+TGG 0.441568 7_2:-72310864 Msa1074480:CDS
GTGTTGTACCAGAATATAAC+AGG 0.441587 7_2:-72308525 Msa1074480:CDS
TACATTATTATTCAAGAACT+TGG 0.444587 7_2:-72311388 Msa1074480:CDS
TAATGTATCACCATCATCAT+AGG 0.445190 7_2:+72311404 None:intergenic
CGTCTCAATGTGTCATCACC+AGG 0.449500 7_2:-72310117 Msa1074480:CDS
CAAACGTTGTATGGAGCAAC+AGG 0.454334 7_2:-72311829 Msa1074480:five_prime_UTR
TCTAGCTCTATCATAGGAAC+TGG 0.455625 7_2:-72310039 Msa1074480:intron
CTTTAACATTAATCGAATCC+TGG 0.456787 7_2:+72310145 None:intergenic
CTACAAATTAATGTTCAATT+GGG 0.463780 7_2:+72308221 None:intergenic
TACTCCCGAAACGATGTCCT+TGG 0.473033 7_2:+72309680 None:intergenic
TCAGGCATTCAAGAAGGCTT+GGG 0.482423 7_2:-72310946 Msa1074480:intron
TTGTTGCATAAAGCCTTAGC+AGG 0.490400 7_2:+72308399 None:intergenic
AACTACCTGATGCCATGGCC+TGG 0.490944 7_2:+72309810 None:intergenic
GAGTGTGGTATAGAGACTTT+GGG 0.495358 7_2:-72311804 Msa1074480:five_prime_UTR
TGATCTTCACTGTAATCTGA+TGG 0.496203 7_2:+72310659 None:intergenic
AGCAACTATTAGTTAATGGT+GGG 0.503518 7_2:-72310607 Msa1074480:CDS
ATGAAACATGTCACAAGTAA+TGG 0.505301 7_2:+72308153 None:intergenic
TGTATCGAGGTATGGAACTA+AGG 0.506317 7_2:+72311649 None:intergenic
ATACTCTTAATATGTGAAGA+AGG 0.514121 7_2:-72308426 Msa1074480:CDS
GTTTCGGGAGTATTAGTGAA+TGG 0.514173 7_2:-72309669 Msa1074480:CDS
CAGCAACTATTAGTTAATGG+TGG 0.520571 7_2:-72310608 Msa1074480:CDS
GGTGGCAAAACTCATGCAAA+AGG 0.522181 7_2:-72310556 Msa1074480:CDS
TAATATTCAGGCATTCAAGA+AGG 0.522536 7_2:-72310952 Msa1074480:intron
AGTAGATAATTATAATCTTG+AGG 0.527229 7_2:+72310885 None:intergenic
GGGAAGTAGTATGTGATTCA+GGG 0.539599 7_2:-72310926 Msa1074480:CDS
TATATCTATATATCCATATG+TGG 0.545137 7_2:-72311739 Msa1074480:five_prime_UTR
CAGTGAGAAATTTCCATGCA+AGG 0.551676 7_2:-72308466 Msa1074480:CDS
TGGATATATAGATATAGGTA+TGG 0.551709 7_2:+72311746 None:intergenic
TGATGACGATAGTGAATGAG+AGG 0.555898 7_2:+72311499 None:intergenic
GATTATGGAGCTAAAGGGGA+TGG 0.559266 7_2:-72311288 Msa1074480:CDS
ATATATAGATGCACTTTGAA+AGG 0.559322 7_2:+72311579 None:intergenic
CAACGTATGTAGTAATAAGC+GGG 0.563528 7_2:+72311439 None:intergenic
AATTCTGATTAATTATTATG+GGG 0.565719 7_2:+72308723 None:intergenic
TCGAGGTATGGAACTAAGGA+GGG 0.569798 7_2:+72311653 None:intergenic
AGTTAGAATTAAGACTTGGC+CGG 0.569890 7_2:-72309619 Msa1074480:intron
ATTTCTGTGAGTTGCAGCGT+GGG 0.569894 7_2:+72308346 None:intergenic
ACTGATATGTTAGATTTGCA+AGG 0.570724 7_2:+72310840 None:intergenic
AAAAGCTATGTATCGAGGTA+TGG 0.571387 7_2:+72311641 None:intergenic
GCAACTATTAGTTAATGGTG+GGG 0.572896 7_2:-72310606 Msa1074480:CDS
TCGATGGAAAAGGAAACATA+TGG 0.573459 7_2:-72310577 Msa1074480:CDS
TCTAACATTTGATAGTTGCA+AGG 0.576561 7_2:-72310223 Msa1074480:CDS
GATTCACCTTCCTATGATGA+TGG 0.579625 7_2:-72311414 Msa1074480:CDS
ATCTCAGTATTGGAAGCTTG+GGG 0.581140 7_2:-72309713 Msa1074480:intron
GCCTTGCAAGGATGCTCCAA+CGG 0.581239 7_2:-72310390 Msa1074480:intron
CAAAGATTATGGAGCTAAAG+GGG 0.581495 7_2:-72311292 Msa1074480:CDS
AATGTTCAATTGTCTTACAC+AGG 0.586671 7_2:-72308378 Msa1074480:CDS
ACCGTTGGAGCATCCTTGCA+AGG 0.589497 7_2:+72310389 None:intergenic
ATTACTTGTGGACCAGGCCA+TGG 0.589996 7_2:-72309822 Msa1074480:CDS
CAACTATTAGTTAATGGTGG+GGG 0.593365 7_2:-72310605 Msa1074480:CDS
TGAAGAAGGAGAACCTGCTA+AGG 0.593731 7_2:-72308412 Msa1074480:CDS
TTGCAATAGCAACTTGCAAG+AGG 0.593871 7_2:-72311463 Msa1074480:CDS
AGAGGAGGAATTGTCTTAGG+AGG 0.600709 7_2:+72311517 None:intergenic
ACAGACATTACTTGTGGACC+AGG 0.604491 7_2:-72309828 Msa1074480:CDS
AAGTTAACTACCTGATGCCA+TGG 0.609029 7_2:+72309805 None:intergenic
GAGGTATGGAACTAAGGAGG+GGG 0.611371 7_2:+72311655 None:intergenic
ATGGAGTTAGAATTAAGACT+TGG 0.618304 7_2:-72309623 Msa1074480:CDS
ATTGGTGATATGAATTCCAT+CGG 0.620342 7_2:+72310080 None:intergenic
GGGAATAGTCCTAACACCGA+TGG 0.628872 7_2:-72310096 Msa1074480:CDS
GAAGCCACAGACATTACTTG+TGG 0.628882 7_2:-72309834 Msa1074480:CDS
TGGTCCACAAGTAATGTCTG+TGG 0.628925 7_2:+72309830 None:intergenic
ATCGAGGTATGGAACTAAGG+AGG 0.629235 7_2:+72311652 None:intergenic
TGACGATAGTGAATGAGAGG+AGG 0.634888 7_2:+72311502 None:intergenic
ACAGTGAAGATCAAAGACAT+TGG 0.636413 7_2:-72310649 Msa1074480:CDS
TCAACGTATGTAGTAATAAG+CGG 0.641060 7_2:+72311438 None:intergenic
TCGGTGTTAGGACTATTCCC+TGG 0.642387 7_2:+72310099 None:intergenic
AGATTGTGTATTTATAGACA+AGG 0.643980 7_2:+72311679 None:intergenic
GTATCACCATCATCATAGGA+AGG 0.644782 7_2:+72311408 None:intergenic
CGAGGTATGGAACTAAGGAG+GGG 0.647138 7_2:+72311654 None:intergenic
TATTTCTGTGAGTTGCAGCG+TGG 0.653112 7_2:+72308345 None:intergenic
ATGGAGCAACAGGCAGAGTG+TGG 0.668229 7_2:-72311819 Msa1074480:five_prime_UTR
TCTCAGTATTGGAAGCTTGG+GGG 0.679058 7_2:-72309712 Msa1074480:intron
GTCTCAATGTGTCATCACCA+GGG 0.683510 7_2:-72310116 Msa1074480:CDS
TGGTCATACTGATGACACAC+AGG 0.686944 7_2:-72311268 Msa1074480:intron
ATGGAAAAGGAAACATATGG+TGG 0.687596 7_2:-72310574 Msa1074480:CDS
TAGATGCACTTTGAAAGGTG+AGG 0.687852 7_2:+72311584 None:intergenic
TTAGCAAAAGCTATGTATCG+AGG 0.688155 7_2:+72311636 None:intergenic
GAGAACGTGGAGTGACACCA+TGG 0.693455 7_2:+72311331 None:intergenic
AGGTATGGAACTAAGGAGGG+GGG 0.695636 7_2:+72311656 None:intergenic
GTTGTTTATGCAGGACTCTG+CGG 0.702531 7_2:-72308562 Msa1074480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAACAAAAAATATCT+TGG + chr7_2:72308768-72308787 None:intergenic 10.0%
!! TTATAATTTACTTAAAAATG+TGG + chr7_2:72309209-72309228 None:intergenic 10.0%
!! AGAAATATTTATTTATTTAG+TGG + chr7_2:72310883-72310902 None:intergenic 10.0%
!!! TCTTATTTGATTAAATATAA+AGG + chr7_2:72311114-72311133 None:intergenic 10.0%
!! TAATTCTGATTAATTATTAT+GGG + chr7_2:72311237-72311256 None:intergenic 10.0%
!! AAAATACAAAAGAACTATAA+TGG - chr7_2:72308415-72308434 Msa1074480:CDS 15.0%
!! CATACAAAATATTAAATTAG+TGG + chr7_2:72308885-72308904 None:intergenic 15.0%
!!! AACTTAAATTTTCCTATAAT+TGG - chr7_2:72308967-72308986 Msa1074480:intron 15.0%
!! ATAATTAGTTAATTAATCAC+TGG + chr7_2:72309168-72309187 None:intergenic 15.0%
!!! ATTGACTTGATTAAAATATT+GGG + chr7_2:72309458-72309477 None:intergenic 15.0%
!!! AATTGACTTGATTAAAATAT+TGG + chr7_2:72309459-72309478 None:intergenic 15.0%
!!! CTAACTAATTTTATTTTTGT+AGG - chr7_2:72309709-72309728 Msa1074480:CDS 15.0%
!! TGAAAAAAAATTACAAGATT+AGG - chr7_2:72309969-72309988 Msa1074480:intron 15.0%
!!! ATAAATGATATTTTAATCAG+TGG - chr7_2:72310841-72310860 Msa1074480:CDS 15.0%
!!! TAAATGATATTTTAATCAGT+GGG - chr7_2:72310842-72310861 Msa1074480:CDS 15.0%
!!! AATAAGACATAAATTTTCTT+TGG - chr7_2:72311127-72311146 Msa1074480:intron 15.0%
!! AATTCTGATTAATTATTATG+GGG + chr7_2:72311236-72311255 None:intergenic 15.0%
!! GTAATTCTGATTAATTATTA+TGG + chr7_2:72311238-72311257 None:intergenic 15.0%
!!! TAATTTACCATTTTTTTACA+TGG + chr7_2:72311279-72311298 None:intergenic 15.0%
!! ACATATGGATATATAGATAT+AGG + chr7_2:72308218-72308237 None:intergenic 20.0%
!! TATATCTATATATCCATATG+TGG - chr7_2:72308217-72308236 Msa1074480:three_prime_UTR 20.0%
!! TTCATATTTATATCCACATA+TGG + chr7_2:72308233-72308252 None:intergenic 20.0%
!! TACATTATTATTCAAGAACT+TGG - chr7_2:72308568-72308587 Msa1074480:intron 20.0%
!! ATTGTTAATGTCAAAGATTA+TGG - chr7_2:72308653-72308672 Msa1074480:intron 20.0%
!!! TTTGTTTTCGATTATAACAA+TGG - chr7_2:72308794-72308813 Msa1074480:intron 20.0%
!!! TTGTTTTCGATTATAACAAT+GGG - chr7_2:72308795-72308814 Msa1074480:intron 20.0%
!! TAAGAAAACCAAATTAGTAT+AGG + chr7_2:72308908-72308927 None:intergenic 20.0%
!! AGTAGATAATTATAATCTTG+AGG + chr7_2:72309074-72309093 None:intergenic 20.0%
!! AAATTTAATTGTCAGATATC+TGG - chr7_2:72309252-72309271 Msa1074480:intron 20.0%
!! GTTAAAACAATGTTCAATTT+AGG + chr7_2:72309610-72309629 None:intergenic 20.0%
!!! TCATAATCAAGGATTTTAAT+TGG - chr7_2:72309669-72309688 Msa1074480:CDS 20.0%
!!! ATTTTTCTGTAATTTGTTTC+AGG - chr7_2:72310059-72310078 Msa1074480:CDS 20.0%
!! TGATTTATATATCTCAGTAT+TGG - chr7_2:72310233-72310252 Msa1074480:intron 20.0%
!!! TCCTTAAAGTTTAAAATTAC+CGG + chr7_2:72310359-72310378 None:intergenic 20.0%
!!! TTTTAAAATAAGTGCATGTT+TGG - chr7_2:72310434-72310453 Msa1074480:intron 20.0%
!!! ATGTAGTTTTAACAAAATCA+CGG - chr7_2:72310665-72310684 Msa1074480:CDS 20.0%
!! TTGAATTCTTTATTGATCAT+AGG - chr7_2:72311075-72311094 Msa1074480:intron 20.0%
!! AAAAAAGCCATGTAAAAAAA+TGG - chr7_2:72311269-72311288 Msa1074480:CDS 20.0%
!! TCACAGAAATATACAAATTA+AGG - chr7_2:72311623-72311642 Msa1074480:CDS 20.0%
!!! AAACTAATTGCATTTTTGTA+TGG + chr7_2:72311677-72311696 None:intergenic 20.0%
!! CTACAAATTAATGTTCAATT+GGG + chr7_2:72311738-72311757 None:intergenic 20.0%
!! ACTACAAATTAATGTTCAAT+TGG + chr7_2:72311739-72311758 None:intergenic 20.0%
! TGGATATATAGATATAGGTA+TGG + chr7_2:72308213-72308232 None:intergenic 25.0%
! AGATTGTGTATTTATAGACA+AGG + chr7_2:72308280-72308299 None:intergenic 25.0%
! ATATATAGATGCACTTTGAA+AGG + chr7_2:72308380-72308399 None:intergenic 25.0%
!!! TTAACAATTTTAAGAGAACG+TGG + chr7_2:72308641-72308660 None:intergenic 25.0%
! TTTGTATGCCTATACTAATT+TGG - chr7_2:72308897-72308916 Msa1074480:intron 25.0%
! AAAAATGTGGAGCTTAAAAA+CGG + chr7_2:72309196-72309215 None:intergenic 25.0%
!! GAGAAAAAGCATAAAAAAGT+TGG + chr7_2:72309536-72309555 None:intergenic 25.0%
! ACAATTATGATTTGACTGTT+CGG - chr7_2:72309628-72309647 Msa1074480:CDS 25.0%
! TTGATTATGAAATCTGTAAC+AGG + chr7_2:72309659-72309678 None:intergenic 25.0%
! TGTTACAGATTTCATAATCA+AGG - chr7_2:72309658-72309677 Msa1074480:CDS 25.0%
! GATTGTATATCAATTGTAGA+TGG - chr7_2:72310086-72310105 Msa1074480:CDS 25.0%
!! TGATATTTTGTCAATCATCA+TGG + chr7_2:72310388-72310407 None:intergenic 25.0%
!! TTTACGTTAAACAAAAGCAT+TGG + chr7_2:72310518-72310537 None:intergenic 25.0%
!! AAATTGAAGCTTCATGTTTT+CGG - chr7_2:72310551-72310570 Msa1074480:CDS 25.0%
! TATTTACTTTGCTTCACTTA+CGG + chr7_2:72310931-72310950 None:intergenic 25.0%
! ATCAAACACAATAATAGTGT+TGG - chr7_2:72310980-72310999 Msa1074480:intron 25.0%
! AATATAAAGGTGAGTAAGTT+AGG + chr7_2:72311101-72311120 None:intergenic 25.0%
!!! ATAAATTTTCTTTGGTCTTG+CGG - chr7_2:72311135-72311154 Msa1074480:intron 25.0%
! CAAATTTCAGAACATTGAAA+TGG - chr7_2:72311197-72311216 Msa1074480:intron 25.0%
! ATACTCTTAATATGTGAAGA+AGG - chr7_2:72311530-72311549 Msa1074480:CDS 25.0%
! ACATGTTTCATATTGTTGTA+AGG - chr7_2:72311815-72311834 Msa1074480:five_prime_UTR 25.0%
ATAGGTATGGAAGTTTAGTT+AGG + chr7_2:72308200-72308219 None:intergenic 30.0%
TCAACGTATGTAGTAATAAG+CGG + chr7_2:72308521-72308540 None:intergenic 30.0%
TAATGTATCACCATCATCAT+AGG + chr7_2:72308555-72308574 None:intergenic 30.0%
TCAAAGATTATGGAGCTAAA+GGG - chr7_2:72308663-72308682 Msa1074480:intron 30.0%
TGAATATTAAATGTCCCACA+TGG + chr7_2:72308993-72309012 None:intergenic 30.0%
ATGTGGGACATTTAATATTC+AGG - chr7_2:72308992-72309011 Msa1074480:intron 30.0%
TAATATTCAGGCATTCAAGA+AGG - chr7_2:72309004-72309023 Msa1074480:intron 30.0%
ACTGATATGTTAGATTTGCA+AGG + chr7_2:72309119-72309138 None:intergenic 30.0%
CAAATCTAACATATCAGTTC+AGG - chr7_2:72309121-72309140 Msa1074480:intron 30.0%
GTTCAGCAACTATTAGTTAA+TGG - chr7_2:72309345-72309364 Msa1074480:intron 30.0%
AGCAACTATTAGTTAATGGT+GGG - chr7_2:72309349-72309368 Msa1074480:intron 30.0%
! TCTAACATTTGATAGTTGCA+AGG - chr7_2:72309733-72309752 Msa1074480:intron 30.0%
CTTTAACATTAATCGAATCC+TGG + chr7_2:72309814-72309833 None:intergenic 30.0%
! ATTGGTGATATGAATTCCAT+CGG + chr7_2:72309879-72309898 None:intergenic 30.0%
!! GATTTTGATGTTTTGGGTAT+TGG + chr7_2:72309897-72309916 None:intergenic 30.0%
!! GCTAGAGATTTTGATGTTTT+GGG + chr7_2:72309903-72309922 None:intergenic 30.0%
!! AGCTAGAGATTTTGATGTTT+TGG + chr7_2:72309904-72309923 None:intergenic 30.0%
!! AAAATCTCTAGCTCTATCAT+AGG - chr7_2:72309911-72309930 Msa1074480:intron 30.0%
!! AAGATTTCTGGAACTACAAA+TGG - chr7_2:72310314-72310333 Msa1074480:intron 30.0%
ATGGAGTTAGAATTAAGACT+TGG - chr7_2:72310333-72310352 Msa1074480:intron 30.0%
! GCCGGTAATTTTAAACTTTA+AGG - chr7_2:72310355-72310374 Msa1074480:intron 30.0%
! TATTTTGTCAATCATCATGG+TGG + chr7_2:72310385-72310404 None:intergenic 30.0%
TAAGTGCATGTTTGGTATAA+TGG - chr7_2:72310442-72310461 Msa1074480:intron 30.0%
GAAAACATGAAGCTTCAATT+TGG + chr7_2:72310552-72310571 None:intergenic 30.0%
!!! TAGTTTTAACAAAATCACGG+TGG - chr7_2:72310668-72310687 Msa1074480:CDS 30.0%
TTGGAAACTCAATGATTGTT+TGG + chr7_2:72310707-72310726 None:intergenic 30.0%
CTGATTAATTATTATGGGGT+TGG + chr7_2:72311232-72311251 None:intergenic 30.0%
!!! TGATTTTGTGTTGTTTATGC+AGG - chr7_2:72311385-72311404 Msa1074480:CDS 30.0%
AATGTTCAATTGTCTTACAC+AGG - chr7_2:72311578-72311597 Msa1074480:CDS 30.0%
ATGAAACATGTCACAAGTAA+TGG + chr7_2:72311806-72311825 None:intergenic 30.0%
AAAAGCTATGTATCGAGGTA+TGG + chr7_2:72308318-72308337 None:intergenic 35.0%
TTAGCAAAAGCTATGTATCG+AGG + chr7_2:72308323-72308342 None:intergenic 35.0%
CAACGTATGTAGTAATAAGC+GGG + chr7_2:72308520-72308539 None:intergenic 35.0%
GTCAAAGATTATGGAGCTAA+AGG - chr7_2:72308662-72308681 Msa1074480:intron 35.0%
CAAAGATTATGGAGCTAAAG+GGG - chr7_2:72308664-72308683 Msa1074480:intron 35.0%
! TTTTCCTATAATTGGCCATG+TGG - chr7_2:72308975-72308994 Msa1074480:intron 35.0%
TTTCCTATAATTGGCCATGT+GGG - chr7_2:72308976-72308995 Msa1074480:intron 35.0%
TGATCTTCACTGTAATCTGA+TGG + chr7_2:72309300-72309319 None:intergenic 35.0%
ACAGTGAAGATCAAAGACAT+TGG - chr7_2:72309307-72309326 Msa1074480:intron 35.0%
CAGCAACTATTAGTTAATGG+TGG - chr7_2:72309348-72309367 Msa1074480:intron 35.0%
GCAACTATTAGTTAATGGTG+GGG - chr7_2:72309350-72309369 Msa1074480:intron 35.0%
CAACTATTAGTTAATGGTGG+GGG - chr7_2:72309351-72309370 Msa1074480:intron 35.0%
! TATGTTTCCTTTTCCATCGA+TGG + chr7_2:72309379-72309398 None:intergenic 35.0%
TCGATGGAAAAGGAAACATA+TGG - chr7_2:72309379-72309398 Msa1074480:intron 35.0%
ATGGAAAAGGAAACATATGG+TGG - chr7_2:72309382-72309401 Msa1074480:intron 35.0%
GAACTATGTATACATACCGT+TGG + chr7_2:72309585-72309604 None:intergenic 35.0%
ACAAATTCACGTTTCATTCC+AGG - chr7_2:72309793-72309812 Msa1074480:intron 35.0%
! ATATGAATTCCATCGGTGTT+AGG + chr7_2:72309872-72309891 None:intergenic 35.0%
! ATATCTCAGTATTGGAAGCT+TGG - chr7_2:72310241-72310260 Msa1074480:intron 35.0%
! TATCTCAGTATTGGAAGCTT+GGG - chr7_2:72310242-72310261 Msa1074480:intron 35.0%
AAAATCCAAGGACATCGTTT+CGG - chr7_2:72310271-72310290 Msa1074480:intron 35.0%
AGTTAGAATTAAGACTTGGC+CGG - chr7_2:72310337-72310356 Msa1074480:intron 35.0%
TTAACAAAATCACGGTGGTT+TGG - chr7_2:72310673-72310692 Msa1074480:CDS 35.0%
TGATAAGTCTAGTGCATGTT+TGG + chr7_2:72310746-72310765 None:intergenic 35.0%
! ATTTATTTAGTGGATCACGC+TGG + chr7_2:72310873-72310892 None:intergenic 35.0%
! AATAGTGTTGGACCAATAGA+TGG - chr7_2:72310992-72311011 Msa1074480:intron 35.0%
TGTATGTTTCCTCCATCTAT+TGG + chr7_2:72311007-72311026 None:intergenic 35.0%
ACACTACAAGTACACTATAC+TGG - chr7_2:72311321-72311340 Msa1074480:CDS 35.0%
GGTACAACACATTGCTAATT+TGG + chr7_2:72311421-72311440 None:intergenic 35.0%
GTGTTGTACCAGAATATAAC+AGG - chr7_2:72311431-72311450 Msa1074480:CDS 35.0%
! CACTTTTGCCTGTTATATTC+TGG + chr7_2:72311442-72311461 None:intergenic 35.0%
! TGCATTTTTATCTCCTTGCA+TGG + chr7_2:72311506-72311525 None:intergenic 35.0%
AGAGTGTGGTATAGAGACTT+TGG - chr7_2:72308151-72308170 Msa1074480:three_prime_UTR 40.0%
GAGTGTGGTATAGAGACTTT+GGG - chr7_2:72308152-72308171 Msa1074480:three_prime_UTR 40.0%
TGTATCGAGGTATGGAACTA+AGG + chr7_2:72308310-72308329 None:intergenic 40.0%
! TAGATGCACTTTGAAAGGTG+AGG + chr7_2:72308375-72308394 None:intergenic 40.0%
ATGAGAGGAGGAATTGTCTT+AGG + chr7_2:72308445-72308464 None:intergenic 40.0%
! TGATGACGATAGTGAATGAG+AGG + chr7_2:72308460-72308479 None:intergenic 40.0%
TTGCAATAGCAACTTGCAAG+AGG - chr7_2:72308493-72308512 Msa1074480:CDS 40.0%
GATTCACCTTCCTATGATGA+TGG - chr7_2:72308542-72308561 Msa1074480:CDS 40.0%
GTATCACCATCATCATAGGA+AGG + chr7_2:72308551-72308570 None:intergenic 40.0%
! GATTTTTCGTGCTTAGACCA+TGG - chr7_2:72308608-72308627 Msa1074480:intron 40.0%
TGGGAAGTAGTATGTGATTC+AGG - chr7_2:72309029-72309048 Msa1074480:intron 40.0%
GGGAAGTAGTATGTGATTCA+GGG - chr7_2:72309030-72309049 Msa1074480:intron 40.0%
CTCAAACCAATCAGATTCTC+TGG - chr7_2:72309092-72309111 Msa1074480:intron 40.0%
!! TCTAGCTCTATCATAGGAAC+TGG - chr7_2:72309917-72309936 Msa1074480:intron 40.0%
AAGTTAACTACCTGATGCCA+TGG + chr7_2:72310154-72310173 None:intergenic 40.0%
! ATCTCAGTATTGGAAGCTTG+GGG - chr7_2:72310243-72310262 Msa1074480:intron 40.0%
AAATCCAAGGACATCGTTTC+GGG - chr7_2:72310272-72310291 Msa1074480:intron 40.0%
!! GTTTCGGGAGTATTAGTGAA+TGG - chr7_2:72310287-72310306 Msa1074480:intron 40.0%
GTGAATGGAGCTAAGATTTC+TGG - chr7_2:72310302-72310321 Msa1074480:intron 40.0%
TTTCGGACGTTTGATGCATT+TGG - chr7_2:72310568-72310587 Msa1074480:CDS 40.0%
CAACAAACTCAGTGACGATT+TGG + chr7_2:72310602-72310621 None:intergenic 40.0%
!!! AATTTTCTTTGGTCTTGCGG+TGG - chr7_2:72311138-72311157 Msa1074480:intron 40.0%
CAGTGAGAAATTTCCATGCA+AGG - chr7_2:72311490-72311509 Msa1074480:CDS 40.0%
TTGTTGCATAAAGCCTTAGC+AGG + chr7_2:72311560-72311579 None:intergenic 40.0%
CAAACGTTGTATGGAGCAAC+AGG - chr7_2:72308127-72308146 Msa1074480:three_prime_UTR 45.0%
TCGAGGTATGGAACTAAGGA+GGG + chr7_2:72308306-72308325 None:intergenic 45.0%
ATCGAGGTATGGAACTAAGG+AGG + chr7_2:72308307-72308326 None:intergenic 45.0%
AGAGGAGGAATTGTCTTAGG+AGG + chr7_2:72308442-72308461 None:intergenic 45.0%
TGACGATAGTGAATGAGAGG+AGG + chr7_2:72308457-72308476 None:intergenic 45.0%
GATTATGGAGCTAAAGGGGA+TGG - chr7_2:72308668-72308687 Msa1074480:intron 45.0%
TGGTCATACTGATGACACAC+AGG - chr7_2:72308688-72308707 Msa1074480:CDS 45.0%
TGTCCCACATGGCCAATTAT+AGG + chr7_2:72308982-72309001 None:intergenic 45.0%
TTCAGGCATTCAAGAAGGCT+TGG - chr7_2:72309009-72309028 Msa1074480:intron 45.0%
TCAGGCATTCAAGAAGGCTT+GGG - chr7_2:72309010-72309029 Msa1074480:intron 45.0%
!! TTCAGGGCAAGCAGTTTTAG+TGG - chr7_2:72309046-72309065 Msa1074480:intron 45.0%
CAAGGACCAGAGAATCTGAT+TGG + chr7_2:72309101-72309120 None:intergenic 45.0%
GGTGGCAAAACTCATGCAAA+AGG - chr7_2:72309400-72309419 Msa1074480:intron 45.0%
! TCTCTTTTTGCAGCCTTGCA+AGG - chr7_2:72309554-72309573 Msa1074480:intron 45.0%
GTCTCAATGTGTCATCACCA+GGG - chr7_2:72309840-72309859 Msa1074480:CDS 45.0%
GAAGCCACAGACATTACTTG+TGG - chr7_2:72310122-72310141 Msa1074480:CDS 45.0%
TGGTCCACAAGTAATGTCTG+TGG + chr7_2:72310129-72310148 None:intergenic 45.0%
ACAGACATTACTTGTGGACC+AGG - chr7_2:72310128-72310147 Msa1074480:CDS 45.0%
! TCTCAGTATTGGAAGCTTGG+GGG - chr7_2:72310244-72310263 Msa1074480:intron 45.0%
! TCAGTGACGATTTGGATCTG+CGG + chr7_2:72310594-72310613 None:intergenic 45.0%
!! TGGCATCTTGGTGGATTTGT+TGG + chr7_2:72310726-72310745 None:intergenic 45.0%
CTAGTGCATGTTTGGCATCT+TGG + chr7_2:72310738-72310757 None:intergenic 45.0%
! TATTTAGTGGATCACGCTGG+AGG + chr7_2:72310870-72310889 None:intergenic 45.0%
CGGTCAATTCATGAGAGCAA+TGG + chr7_2:72310911-72310930 None:intergenic 45.0%
! AGTGTTGGACCAATAGATGG+AGG - chr7_2:72310995-72311014 Msa1074480:intron 45.0%
TCTTGCGGTGGTTAAATGCA+GGG - chr7_2:72311150-72311169 Msa1074480:intron 45.0%
GTTGTTTATGCAGGACTCTG+CGG - chr7_2:72311394-72311413 Msa1074480:CDS 45.0%
TGAAGAAGGAGAACCTGCTA+AGG - chr7_2:72311544-72311563 Msa1074480:CDS 45.0%
ATTTCTGTGAGTTGCAGCGT+GGG + chr7_2:72311613-72311632 None:intergenic 45.0%
! TATTTCTGTGAGTTGCAGCG+TGG + chr7_2:72311614-72311633 None:intergenic 45.0%
AGGTATGGAACTAAGGAGGG+GGG + chr7_2:72308303-72308322 None:intergenic 50.0%
GAGGTATGGAACTAAGGAGG+GGG + chr7_2:72308304-72308323 None:intergenic 50.0%
CGAGGTATGGAACTAAGGAG+GGG + chr7_2:72308305-72308324 None:intergenic 50.0%
CGTCTCAATGTGTCATCACC+AGG - chr7_2:72309839-72309858 Msa1074480:CDS 50.0%
!! TCGGTGTTAGGACTATTCCC+TGG + chr7_2:72309860-72309879 None:intergenic 50.0%
GGGAATAGTCCTAACACCGA+TGG - chr7_2:72309860-72309879 Msa1074480:CDS 50.0%
ATTACTTGTGGACCAGGCCA+TGG - chr7_2:72310134-72310153 Msa1074480:CDS 50.0%
TACTCCCGAAACGATGTCCT+TGG + chr7_2:72310279-72310298 None:intergenic 50.0%
GTGCATGTTTGGCATCTTGG+TGG + chr7_2:72310735-72310754 None:intergenic 50.0%
GTCTTGCGGTGGTTAAATGC+AGG - chr7_2:72311149-72311168 Msa1074480:intron 50.0%
GGTTAAATGCAGGGAGGTTC+AGG - chr7_2:72311159-72311178 Msa1074480:intron 50.0%
ATGGAGCAACAGGCAGAGTG+TGG - chr7_2:72308137-72308156 Msa1074480:three_prime_UTR 55.0%
GAGAACGTGGAGTGACACCA+TGG + chr7_2:72308628-72308647 None:intergenic 55.0%
! AATGGTGGGGGAACCATCGA+TGG - chr7_2:72309363-72309382 Msa1074480:intron 55.0%
GGGGGAACCATCGATGGAAA+AGG - chr7_2:72309369-72309388 Msa1074480:intron 55.0%
GCCTTGCAAGGATGCTCCAA+CGG - chr7_2:72309566-72309585 Msa1074480:intron 55.0%
! ACCGTTGGAGCATCCTTGCA+AGG + chr7_2:72309570-72309589 None:intergenic 55.0%
AACTACCTGATGCCATGGCC+TGG + chr7_2:72310149-72310168 None:intergenic 55.0%
! AGTATTGGAAGCTTGGGGGC+TGG - chr7_2:72310248-72310267 Msa1074480:intron 55.0%
CTTGGGGGCTGGAAAATCCA+AGG - chr7_2:72310259-72310278 Msa1074480:intron 55.0%
TGCGGTGGTTAAATGCAGGG+AGG - chr7_2:72311153-72311172 Msa1074480:intron 55.0%
GTGGACCAGGCCATGGCATC+AGG - chr7_2:72310141-72310160 Msa1074480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 72308126 72311852 72308126 ID=Msa1074480;Name=Msa1074480
chr7_2 mRNA 72308126 72311852 72308126 ID=Msa1074480-mRNA-1;Parent=Msa1074480;Name=Msa1074480-mRNA-1;_AED=0.28;_eAED=0.28;_QI=122|1|1|1|0.87|0.88|9|209|511
chr7_2 exon 72308126 72308571 72308126 ID=Msa1074480-mRNA-1:exon:16643;Parent=Msa1074480-mRNA-1
chr7_2 exon 72308688 72308807 72308688 ID=Msa1074480-mRNA-1:exon:16642;Parent=Msa1074480-mRNA-1
chr7_2 exon 72309620 72309728 72309620 ID=Msa1074480-mRNA-1:exon:16641;Parent=Msa1074480-mRNA-1
chr7_2 exon 72309816 72309897 72309816 ID=Msa1074480-mRNA-1:exon:16640;Parent=Msa1074480-mRNA-1
chr7_2 exon 72310040 72310247 72310040 ID=Msa1074480-mRNA-1:exon:16639;Parent=Msa1074480-mRNA-1
chr7_2 exon 72310391 72310411 72310391 ID=Msa1074480-mRNA-1:exon:16638;Parent=Msa1074480-mRNA-1
chr7_2 exon 72310544 72310711 72310544 ID=Msa1074480-mRNA-1:exon:16637;Parent=Msa1074480-mRNA-1
chr7_2 exon 72310836 72310964 72310836 ID=Msa1074480-mRNA-1:exon:16636;Parent=Msa1074480-mRNA-1
chr7_2 exon 72311269 72311852 72311269 ID=Msa1074480-mRNA-1:exon:16635;Parent=Msa1074480-mRNA-1
chr7_2 five_prime_UTR 72311731 72311852 72311731 ID=Msa1074480-mRNA-1:five_prime_utr;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72311269 72311730 72311269 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72310836 72310964 72310836 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72310544 72310711 72310544 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72310391 72310411 72310391 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72310040 72310247 72310040 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72309816 72309897 72309816 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72309620 72309728 72309620 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72308688 72308807 72308688 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 CDS 72308335 72308571 72308335 ID=Msa1074480-mRNA-1:cds;Parent=Msa1074480-mRNA-1
chr7_2 three_prime_UTR 72308126 72308334 72308126 ID=Msa1074480-mRNA-1:three_prime_utr;Parent=Msa1074480-mRNA-1
Gene Sequence

>Msa1074480

ATGAAAAGCAAACATGATCTTGTTAATTTCCTTGTCTATAAATACACAATCTCCCCCCTCCTTAGTTCCATACCTCGATACATAGCTTTTGCTAAATATATTCTCATCAAACAATTATATTATTCCTCACCTTTCAAAGTGCATCTATATATTTTTCTCAATATAGTAAAATACAAAAGAACTATAATGGTCCTCCTAAGACAATTCCTCCTCTCATTCACTATCGTCATCATTTCATTTGTTGCTTGCAATAGCAACTTGCAAGAGGACCCGCTTATTACTACATACGTTGATGATTCACCTTCCTATGATGATGGTGATACATTATTATTCAAGAACTTGGTTGAGCAAAACACAAATGATTTTTCGTGCTTAGACCATGGTGTCACTCCACGTTCTCTTAAAATTGTTAATGTCAAAGATTATGGAGCTAAAGGGGATGGTCATACTGATGACACACAGGCATTCAAGAAGGCTTGGGAAGTAGTATGTGATTCAGGGCAAGCAGTTTTAGTGGCACCTCAAGATTATAATTATCTACTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTAACATATCAGTTCAGATATCTGGAAGTCTTGAAGCATCAGATAATCCATCAGATTACAGTGAAGATCAAAGACATTGGCTTGTATTTGAGCAAGTTCAGCAACTATTAGTTAATGGTGGGGGAACCATCGATGGAAAAGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGAAACCTTGCAAGGATGCTCCAACGGCTCTAACATTTGATAGTTGCAAGGACTTAATAGTTGACGATTTGACAATACAAAATGCGCAACAAATTCACGTTTCATTCCAGGATTCGATTAATGTTAAAGCTTCTCGTCTCAATGTGTCATCACCAGGGAATAGTCCTAACACCGATGGAATTCATATCACCAATACCCAAAACATCAAAATCTCTAGCTCTATCATAGGAACTGGTGACGATTGTATATCAATTGTAGATGGATCTAGTAATGTAGAAGCCACAGACATTACTTGTGGACCAGGCCATGGCATCAGTATTGGAAGCTTGGGGGCTGGAAAATCCAAGGACATCGTTTCGGGAGTATTAGTGAATGGAGCTAAGATTTCTGGAACTACAAATGGAGTTAGAATTAAGACTTGGCCGGGAGGTTCAGGAAGTGCTAGCAACATCAAATTTCAGAACATTGAAATGGACAATGTGACCAACCCCATAATAATTAATCAGAATTACTGTGACAAGAAAAAAAAGCCATGTAAAAAAATGGACTCTGCGGTCCAAATTAGCAATGTGTTGTACCAGAATATAACAGGCAAAAGTGCTTCTGATATAGCTGTAAAGTTTGATTGCAGTGAGAAATTTCCATGCAAGGAGATAAAAATGCAAAACATACTCTTAATATGTGAAGAAGGAGAACCTGCTAAGGCTTTATGCAACAATGTTCAATTGTCTTACACAGGAAATGTTAACCCACGCTGCAACTCACAGAAATATACAAATTAA
Protein sequence

>Msa1074480

MKSKHDLVNFLVYKYTISPLLSSIPRYIAFAKYILIKQLYYSSPFKVHLYIFLNIVKYKRTIMVLLRQFLLSFTIVIISFVACNSNLQEDPLITTYVDDSPSYDDGDTLLFKNLVEQNTNDFSCLDHGVTPRSLKIVNVKDYGAKGDGHTDDTQAFKKAWEVVCDSGQAVLVAPQDYNYLLKPIRFSGPCKSNISVQISGSLEASDNPSDYSEDQRHWLVFEQVQQLLVNGGGTIDGKGNIWWQNSCKRNKKKPCKDAPTALTFDSCKDLIVDDLTIQNAQQIHVSFQDSINVKASRLNVSSPGNSPNTDGIHITNTQNIKISSSIIGTGDDCISIVDGSSNVEATDITCGPGHGISIGSLGAGKSKDIVSGVLVNGAKISGTTNGVRIKTWPGGSGSASNIKFQNIEMDNVTNPIIINQNYCDKKKKPCKKMDSAVQISNVLYQNITGKSASDIAVKFDCSEKFPCKEIKMQNILLICEEGEPAKALCNNVQLSYTGNVNPRCNSQKYTN*