AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1034680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034680 MtrunA17_Chr7g0257721 86.006 343 36 3 65 402 1 336 0.0 569
Msa1034680 MtrunA17_Chr1g0173451 59.821 448 144 10 65 488 1 436 3.38e-175 500
Msa1034680 MtrunA17_Chr7g0257701 63.145 407 78 6 65 416 1 390 5.03e-161 462
Msa1034680 MtrunA17_Chr4g0020771 46.035 454 202 9 61 487 4 441 5.84e-125 371
Msa1034680 MtrunA17_Chr3g0089021 46.548 449 203 6 65 488 1 437 2.27e-120 359
Msa1034680 MtrunA17_Chr2g0332801 45.257 369 180 4 138 485 58 425 3.66e-105 321
Msa1034680 MtrunA17_Chr8g0365901 42.663 368 189 4 138 485 64 429 7.54e-102 313
Msa1034680 MtrunA17_Chr6g0449961 41.803 366 176 7 124 460 21 378 3.90e-88 276
Msa1034680 MtrunA17_Chr4g0052621 41.061 358 179 7 138 466 64 418 1.70e-82 263
Msa1034680 MtrunA17_Chr1g0194231 38.333 360 188 7 138 466 80 436 1.35e-78 253
Msa1034680 MtrunA17_Chr5g0413411 37.875 367 179 6 140 460 122 485 1.23e-75 247
Msa1034680 MtrunA17_Chr7g0257711 99.115 113 1 0 377 489 3 115 1.10e-74 231
Msa1034680 MtrunA17_Chr7g0270361 37.151 358 194 6 138 466 66 421 1.52e-74 242
Msa1034680 MtrunA17_Chr2g0332971 39.017 346 184 7 140 460 29 372 2.26e-74 240
Msa1034680 MtrunA17_Chr4g0043431 41.192 369 188 10 140 486 36 397 2.30e-74 239
Msa1034680 MtrunA17_Chr2g0303941 38.378 370 197 7 139 486 28 388 3.37e-72 234
Msa1034680 MtrunA17_Chr4g0043661 37.135 377 197 9 140 486 24 390 3.80e-71 231
Msa1034680 MtrunA17_Chr5g0413141 37.283 346 189 5 140 460 60 402 1.10e-70 232
Msa1034680 MtrunA17_Chr8g0365891 35.310 371 184 6 140 460 108 472 3.91e-69 229
Msa1034680 MtrunA17_Chr4g0067631 37.766 376 200 11 137 485 50 418 3.51e-68 224
Msa1034680 MtrunA17_Chr7g0230891 37.398 369 200 9 140 486 38 397 3.73e-68 223
Msa1034680 MtrunA17_Chr1g0195221 34.271 391 215 11 130 485 19 402 4.22e-68 223
Msa1034680 MtrunA17_Chr8g0348981 40.171 351 176 9 137 460 25 368 6.57e-68 223
Msa1034680 MtrunA17_Chr3g0121881 37.330 367 196 9 137 478 31 388 1.11e-66 219
Msa1034680 MtrunA17_Chr3g0121891 37.433 374 194 9 129 472 15 378 1.59e-66 219
Msa1034680 MtrunA17_Chr2g0293681 37.736 371 190 7 138 474 66 429 2.00e-66 220
Msa1034680 MtrunA17_Chr7g0228411 35.264 397 205 11 126 476 27 417 2.79e-66 219
Msa1034680 MtrunA17_Chr8g0337571 38.187 364 182 10 138 476 30 375 3.75e-65 215
Msa1034680 MtrunA17_Chr5g0418411 36.436 376 206 6 126 476 16 383 4.50e-65 215
Msa1034680 MtrunA17_Chr4g0018151 36.856 369 197 6 132 476 71 427 1.47e-64 215
Msa1034680 MtrunA17_Chr2g0295451 39.016 305 155 9 137 413 51 352 8.66e-61 204
Msa1034680 MtrunA17_Chr8g0337581 36.438 365 188 12 138 476 30 376 1.17e-60 204
Msa1034680 MtrunA17_Chr1g0150291 34.232 371 212 9 139 486 45 406 5.01e-59 200
Msa1034680 MtrunA17_Chr6g0461181 33.747 403 187 10 140 475 31 420 8.54e-59 200
Msa1034680 MtrunA17_Chr2g0307811 33.598 378 217 9 138 489 24 393 2.02e-57 196
Msa1034680 MtrunA17_Chr1g0150301 34.903 361 203 9 139 476 27 378 4.44e-57 194
Msa1034680 MtrunA17_Chr2g0291841 37.879 330 173 9 181 486 38 359 7.99e-56 190
Msa1034680 MtrunA17_Chr3g0100091 34.270 356 162 6 140 476 31 333 1.75e-52 181
Msa1034680 MtrunA17_Chr2g0307831 30.769 377 229 8 138 489 24 393 2.08e-52 182
Msa1034680 MtrunA17_Chr2g0307821 30.769 377 229 8 138 489 24 393 2.08e-52 182
Msa1034680 MtrunA17_Chr1g0149241 34.195 348 200 10 135 476 24 348 2.06e-49 173
Msa1034680 MtrunA17_Chr5g0447901 33.562 292 167 5 138 406 24 311 2.08e-47 167
Msa1034680 MtrunA17_Chr5g0425811 34.307 274 146 8 157 406 3 266 5.30e-45 159
Msa1034680 MtrunA17_Chr7g0273191 54.815 135 61 0 241 375 2 136 5.92e-45 154
Msa1034680 MtrunA17_Chr8g0337521 40.083 242 121 8 138 373 30 253 4.28e-44 157
Msa1034680 MtrunA17_Chr8g0336481 36.567 268 135 5 198 444 14 267 1.00e-42 152
Msa1034680 MtrunA17_Chr3g0093011 36.585 246 132 3 263 485 13 257 1.52e-39 144
Msa1034680 MtrunA17_Chr8g0337511 36.626 243 126 4 264 486 5 239 2.97e-38 139
Msa1034680 MtrunA17_Chr8g0337601 39.056 233 115 5 264 476 2 227 1.44e-36 135
Msa1034680 MtrunA17_Chr8g0337351 41.401 157 72 1 274 410 1 157 1.52e-26 105
Msa1034680 MtrunA17_Chr8g0337551 50.909 110 54 0 266 375 7 116 1.24e-24 99.8
Msa1034680 MtrunA17_Chr3g0093021 40.476 126 69 5 133 256 21 142 1.59e-21 91.7
Msa1034680 MtrunA17_Chr8g0337541 38.333 120 65 6 138 251 30 146 2.32e-19 85.1
Msa1034680 MtrunA17_Chr7g0273181 44.792 96 50 2 392 485 1 95 1.42e-18 81.6
Msa1034680 MtrunA17_Chr5g0442221 23.988 321 184 12 139 408 44 355 4.64e-15 77.4
Msa1034680 MtrunA17_Chr2g0330221 26.875 160 109 4 155 311 39 193 1.79e-14 72.4
Msa1034680 MtrunA17_Chr8g0373171 43.529 85 48 0 264 348 7 91 1.04e-13 67.8
Msa1034680 MtrunA17_Chr2g0295241 24.198 405 232 15 139 486 37 423 2.58e-13 72.0
Msa1034680 MtrunA17_Chr7g0248451 22.494 449 251 18 110 488 24 445 2.63e-12 68.9
Msa1034680 MtrunA17_Chr1g0202641 28.378 222 131 7 141 341 57 271 7.33e-12 68.2
Msa1034680 MtrunA17_Chr7g0255311 26.295 251 153 8 111 341 41 279 1.65e-11 66.2
Msa1034680 MtrunA17_Chr8g0387391 26.577 222 139 7 139 341 44 260 1.79e-11 66.2
Msa1034680 MtrunA17_Chr3g0130251 24.250 400 194 16 138 460 75 442 3.42e-11 65.5
Msa1034680 MtrunA17_Chr4g0067811 22.959 392 232 13 139 475 40 416 4.74e-11 64.7
Msa1034680 MtrunA17_Chr8g0348491 21.845 412 234 14 139 486 55 442 5.37e-11 64.7
Msa1034680 MtrunA17_Chr8g0337561 36.697 109 59 4 369 476 2 101 5.83e-11 59.7
Msa1034680 MtrunA17_Chr3g0095221 23.248 314 192 12 139 407 47 356 7.68e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034680 AT3G07970.1 47.991 448 194 11 65 487 5 438 2.25e-129 383
Msa1034680 AT3G57510.1 46.188 446 201 9 65 487 1 430 2.56e-128 380
Msa1034680 AT2G41850.1 53.175 378 147 6 134 489 63 432 1.10e-123 368
Msa1034680 AT1G70500.1 39.910 446 232 9 67 488 1 434 5.69e-104 319
Msa1034680 AT1G23460.2 44.293 368 183 4 138 485 42 407 1.09e-103 317
Msa1034680 AT1G23460.1 44.293 368 183 4 138 485 66 431 1.82e-103 317
Msa1034680 AT1G80170.1 43.850 374 187 7 134 485 48 420 4.05e-102 313
Msa1034680 AT5G14650.1 40.351 342 178 6 139 460 51 386 2.10e-79 254
Msa1034680 AT1G02460.1 39.945 363 181 8 138 466 88 447 1.40e-78 254
Msa1034680 AT1G56710.1 38.889 360 186 7 138 466 47 403 1.44e-78 252
Msa1034680 AT1G10640.1 38.919 370 177 6 137 460 117 483 2.83e-78 254
Msa1034680 AT2G43890.1 38.211 369 197 10 140 486 30 389 6.71e-77 246
Msa1034680 AT1G60590.1 37.568 370 179 6 140 460 124 490 1.30e-76 250
Msa1034680 AT1G80170.2 46.531 245 125 3 134 372 48 292 3.49e-75 240
Msa1034680 AT1G48100.1 37.989 358 190 6 138 466 79 433 5.32e-75 244
Msa1034680 AT1G05660.1 37.736 371 199 9 138 485 27 388 1.79e-74 240
Msa1034680 AT1G05650.1 37.037 378 206 9 131 485 20 388 3.14e-74 239
Msa1034680 AT4G01890.1 37.940 369 186 10 127 461 59 418 1.30e-73 240
Msa1034680 AT3G15720.1 37.875 367 193 7 139 480 24 380 3.28e-73 239
Msa1034680 AT3G15720.3 37.875 367 193 7 139 480 23 379 3.51e-73 239
Msa1034680 AT3G26610.1 39.674 368 187 7 138 474 66 429 4.61e-73 239
Msa1034680 AT4G18180.1 35.678 398 210 11 131 488 31 422 2.24e-72 236
Msa1034680 AT2G43880.1 35.809 377 211 8 132 486 24 391 1.16e-71 233
Msa1034680 AT5G44840.1 36.188 362 200 6 137 475 22 375 6.04e-71 231
Msa1034680 AT2G33160.1 38.032 376 200 10 137 485 30 399 7.80e-71 238
Msa1034680 AT4G35670.1 39.276 359 186 6 140 475 25 374 1.13e-70 230
Msa1034680 AT5G27530.1 38.567 363 183 6 137 476 51 396 1.97e-70 231
Msa1034680 AT1G78400.1 35.657 373 210 7 137 485 33 399 2.81e-70 229
Msa1034680 AT1G17150.1 38.601 386 201 12 131 487 22 400 3.33e-70 229
Msa1034680 AT3G15720.2 37.057 367 193 7 139 480 23 376 4.67e-70 230
Msa1034680 AT2G43860.1 39.050 379 194 11 124 478 22 387 5.35e-70 229
Msa1034680 AT5G17200.1 36.292 383 192 7 138 478 38 410 4.17e-69 227
Msa1034680 AT2G43870.1 36.220 381 209 10 131 487 13 383 9.00e-69 225
Msa1034680 AT3G59850.2 37.297 370 199 10 140 485 68 428 5.86e-67 222
Msa1034680 AT3G59850.1 37.297 370 199 10 140 485 24 384 7.24e-67 220
Msa1034680 AT1G02790.1 35.770 383 200 12 138 487 51 420 8.18e-67 221
Msa1034680 AT1G43080.1 36.842 380 202 13 137 486 29 400 1.46e-64 214
Msa1034680 AT1G43090.1 36.800 375 199 13 137 481 29 395 4.14e-64 214
Msa1034680 AT4G13760.1 36.316 380 204 13 137 486 29 400 7.93e-64 213
Msa1034680 AT2G15460.1 36.504 389 206 14 131 486 20 400 9.59e-64 212
Msa1034680 AT1G43100.1 36.533 375 200 13 137 481 29 395 5.87e-63 211
Msa1034680 AT2G15450.1 37.709 358 186 12 131 458 20 370 8.35e-63 210
Msa1034680 AT5G14650.2 40.152 264 144 4 139 401 51 301 1.85e-61 204
Msa1034680 AT2G40310.1 35.356 379 209 12 137 486 29 400 3.17e-61 206
Msa1034680 AT2G15470.1 35.733 389 209 14 131 486 20 400 6.49e-61 205
Msa1034680 AT4G32380.1 34.682 346 194 7 138 458 25 363 7.49e-61 206
Msa1034680 AT1G65570.1 35.753 372 205 11 139 485 31 393 2.34e-60 203
Msa1034680 AT3G07840.1 32.800 375 215 8 139 486 21 385 4.68e-60 202
Msa1034680 AT3G15720.4 36.728 324 171 6 181 480 3 316 2.47e-59 201
Msa1034680 AT3G07830.1 33.791 364 207 9 152 489 34 389 8.29e-59 199
Msa1034680 AT2G43880.2 35.350 314 174 6 132 423 24 330 4.33e-58 195
Msa1034680 AT2G26620.1 35.659 387 210 14 131 486 20 398 8.71e-58 197
Msa1034680 AT5G48140.1 33.421 380 212 9 139 489 21 388 1.88e-57 196
Msa1034680 AT3G07820.1 33.148 359 209 7 152 486 33 384 3.94e-57 194
Msa1034680 AT3G14040.1 35.389 373 206 11 139 485 71 434 4.72e-57 196
Msa1034680 AT5G44830.1 34.731 334 177 6 165 475 1 316 5.75e-57 192
Msa1034680 AT3G07850.1 35.121 373 207 11 139 485 70 433 7.47e-56 192
Msa1034680 AT4G32380.2 34.356 326 181 8 138 458 25 322 6.65e-55 189
Msa1034680 AT1G80140.1 34.627 335 185 8 176 485 7 332 3.72e-54 185
Msa1034680 AT4G32370.1 38.361 305 150 10 137 411 32 328 1.67e-53 184
Msa1034680 AT5G39910.1 31.978 369 192 7 138 486 35 364 2.01e-53 184
Msa1034680 AT4G35670.2 38.971 272 138 3 220 472 2 264 1.72e-50 174
Msa1034680 AT4G32375.1 37.023 262 139 2 216 458 9 263 3.75e-50 177
Msa1034680 AT4G23820.1 26.710 307 190 10 139 414 41 343 5.98e-15 77.4
Msa1034680 AT5G49215.1 26.154 390 213 15 139 470 43 415 6.43e-15 77.4
Msa1034680 AT5G49215.2 26.154 390 213 15 139 470 41 413 6.44e-15 77.4
Msa1034680 AT1G19170.1 22.439 410 238 17 138 486 86 476 2.26e-13 72.8
Msa1034680 AT3G06770.2 25.066 379 206 13 139 458 43 402 3.03e-13 72.0
Msa1034680 AT3G06770.5 25.066 379 206 13 139 458 44 403 3.67e-13 72.0
Msa1034680 AT4G33440.1 23.134 402 198 15 138 453 71 447 1.15e-12 70.5
Msa1034680 AT3G62110.1 25.990 404 235 21 139 489 43 435 8.38e-12 67.8
Msa1034680 AT3G62110.2 25.990 404 235 21 139 489 43 435 8.38e-12 67.8
Msa1034680 AT5G41870.1 24.367 316 191 11 137 407 43 355 1.80e-11 66.6

Find 110 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACAACACATTGCTAATT+TGG 0.092906 7_1:+70235688 None:intergenic
GTAATTCTGGTTGATTATTA+TGG 0.171350 7_1:+70235875 None:intergenic
TCATAGAAATATTCAAATTA+AGG 0.226008 7_1:-70235483 Msa1034680:exon
ACTACAAATTAATGTTGAAT+TGG 0.238139 7_1:+70235370 None:intergenic
TGGGAAGTAGTATGTGATTC+AGG 0.267912 7_1:-70237953 Msa1034680:CDS
GTTCAGCAACTATTAGTTAA+TGG 0.294863 7_1:-70237637 Msa1034680:CDS
AAATCCAGGGACATTGTTTC+GGG 0.300030 7_1:-70236669 Msa1034680:CDS
TAATTCTGGTTGATTATTAT+GGG 0.314464 7_1:+70235876 None:intergenic
AAATTTAATTGACAGATATC+TGG 0.320792 7_1:-70237730 Msa1034680:intron
ATTGTTAATGTCAAAGATTA+TGG 0.321747 7_1:-70238329 Msa1034680:CDS
GGTTAAATGCAGGGAGGTTC+AGG 0.324538 7_1:-70235951 Msa1034680:intron
AAAATCCAGGGACATTGTTT+CGG 0.353625 7_1:-70236670 Msa1034680:CDS
ATATCCACATATGGATATAT+AGG 0.368390 7_1:+70238767 None:intergenic
ACAAATTCACGTTTCATTCC+AGG 0.368923 7_1:-70237177 Msa1034680:CDS
ATGAGAGGAGGAATTGTCTT+AGG 0.379406 7_1:+70238540 None:intergenic
TATCTCAGTATTGGAAGCTT+GGG 0.384966 7_1:-70236699 Msa1034680:intron
CAAATTTCAGAACATTGAAA+TGG 0.394222 7_1:-70235913 Msa1034680:CDS
ACATGTTTCATATTGTTGTA+AGG 0.396150 7_1:-70235291 Msa1034680:three_prime_UTR
TTTATGGAGCAAACGTTGTA+TGG 0.398145 7_1:-70238864 None:intergenic
GTGGACCAGGCCATGGCATC+AGG 0.404513 7_1:-70236824 Msa1034680:intron
CTACAAATTAATGTTGAATT+GGG 0.404833 7_1:+70235371 None:intergenic
TTCATATTAATATCCACATA+TGG 0.410071 7_1:+70238758 None:intergenic
ATAGGTATGGAAGTTTAGTT+AGG 0.413211 7_1:+70238785 None:intergenic
GTCAAAGATTATGGAGCTAA+AGG 0.414898 7_1:-70238320 Msa1034680:CDS
CAAGGACCAGAGAATCTGAT+TGG 0.415737 7_1:+70237884 None:intergenic
AAAATCTCTAGCTCTATCAT+AGG 0.416238 7_1:-70237059 Msa1034680:CDS
TCAAAGATTATGGAGCTAAA+GGG 0.422051 7_1:-70238319 Msa1034680:CDS
GATTGTATATCAATTGTAGA+TGG 0.423588 7_1:-70236879 Msa1034680:CDS
ATATGAATTCCATCGGTGTT+AGG 0.428068 7_1:+70237101 None:intergenic
AAAATACAAAAGAACTATAA+TGG 0.434958 7_1:-70238567 Msa1034680:CDS
AGAGTGTGGTATAGAGACTT+TGG 0.439073 7_1:-70238831 Msa1034680:five_prime_UTR
ATATCTCAGTATTGGAAGCT+TGG 0.439364 7_1:-70236700 Msa1034680:intron
TTCAGGCATTCAAGAAGGCT+TGG 0.439440 7_1:-70237973 Msa1034680:intron
GATGCCATGGCCTGGTCCAC+AGG 0.440698 7_1:+70236827 None:intergenic
CTCAAACCAATCAGATTCTC+TGG 0.441568 7_1:-70237890 Msa1034680:CDS
GTGTTGTACCAGAATATAAC+AGG 0.441587 7_1:-70235675 Msa1034680:CDS
TACATTATTATTCAAGAACT+TGG 0.444587 7_1:-70238414 Msa1034680:CDS
TAATGTATCACCATCATCAT+AGG 0.445190 7_1:+70238430 None:intergenic
CGTCTCAATGTGTCATCACC+AGG 0.449500 7_1:-70237131 Msa1034680:CDS
CAAACGTTGTATGGAGCAAC+AGG 0.454334 7_1:-70238855 Msa1034680:five_prime_UTR
TCTAGCTCTATCATAGGAAC+TGG 0.455625 7_1:-70237053 Msa1034680:intron
CTTTAACATTAATCGAATCC+TGG 0.456787 7_1:+70237159 None:intergenic
CTGGTTGATTATTATGGGGT+TGG 0.457178 7_1:+70235881 None:intergenic
AATGGTGGTGGAACCATTGA+TGG 0.479530 7_1:-70237619 Msa1034680:CDS
TCAGGCATTCAAGAAGGCTT+GGG 0.482423 7_1:-70237972 Msa1034680:intron
TTGTTGCATAAAGCCTTAGC+AGG 0.490400 7_1:+70235549 None:intergenic
AACTACCTGATGCCATGGCC+TGG 0.490944 7_1:+70236819 None:intergenic
GAGTGTGGTATAGAGACTTT+GGG 0.495358 7_1:-70238830 Msa1034680:five_prime_UTR
TACTCCCGAAACAATGTCCC+TGG 0.495411 7_1:+70236665 None:intergenic
TGATCTTCACTGTAATCTGA+TGG 0.496203 7_1:+70237685 None:intergenic
TCAACGTATGTAGTAATAAG+TGG 0.504104 7_1:+70238464 None:intergenic
ATGAAACATGTGACAAGTAA+TGG 0.505301 7_1:+70235303 None:intergenic
TGTATCGAGGTATGGAACTA+AGG 0.506317 7_1:+70238681 None:intergenic
ATACTCTTAATATGTGAAGA+AGG 0.514121 7_1:-70235576 Msa1034680:CDS
GGTGGCAAAACTCATGCAAA+AGG 0.522181 7_1:-70237582 Msa1034680:CDS
TAATATTCAGGCATTCAAGA+AGG 0.522536 7_1:-70237978 Msa1034680:intron
AGTAGATAATTATAATCTTG+AGG 0.527229 7_1:+70237911 None:intergenic
CAACTATTAGTTAATGGTGG+TGG 0.535177 7_1:-70237631 Msa1034680:CDS
CACATATGGATATATAGGTA+TGG 0.535510 7_1:+70238772 None:intergenic
CAAATCTAACATATCAGTCC+AGG 0.537341 7_1:-70237861 Msa1034680:intron
GGGAAGTAGTATGTGATTCA+GGG 0.539599 7_1:-70237952 Msa1034680:CDS
CATACCTATATATCCATATG+TGG 0.542358 7_1:-70238771 Msa1034680:five_prime_UTR
TTAATATACCAGTGTGTCAT+CGG 0.548716 7_1:+70238286 None:intergenic
TTGATGGAAAAGGAAACATA+TGG 0.551923 7_1:-70237603 Msa1034680:CDS
GATTATGGAGCTAAAGGGGA+TGG 0.559266 7_1:-70238314 Msa1034680:CDS
ATATATAGATGCACTTTGAA+AGG 0.559322 7_1:+70238611 None:intergenic
AATTCTGGTTGATTATTATG+GGG 0.564037 7_1:+70235877 None:intergenic
TCGAGGTATGGAACTAAGGA+GGG 0.569798 7_1:+70238685 None:intergenic
ACAGACATTACCTGTGGACC+AGG 0.570239 7_1:-70236837 Msa1034680:CDS
ACTGATATGTTAGATTTGCA+AGG 0.570724 7_1:+70237866 None:intergenic
AAAAGCTATGTATCGAGGTA+TGG 0.571387 7_1:+70238673 None:intergenic
TCTAACATTTGATAGTTGCA+AGG 0.576561 7_1:-70237237 Msa1034680:CDS
GATTCACCTTCCTATGATGA+TGG 0.579625 7_1:-70238440 Msa1034680:CDS
ATCTCAGTATTGGAAGCTTG+GGG 0.581140 7_1:-70236698 Msa1034680:intron
GCCTTGCAAGGATGCTCCAA+CGG 0.581239 7_1:-70237421 Msa1034680:intron
CAAAGATTATGGAGCTAAAG+GGG 0.581495 7_1:-70238318 Msa1034680:CDS
AATGTTCAATTGTCTTACAC+AGG 0.586671 7_1:-70235528 Msa1034680:CDS
ACCGTTGGAGCATCCTTGCA+AGG 0.589497 7_1:+70237420 None:intergenic
ATTACCTGTGGACCAGGCCA+TGG 0.589996 7_1:-70236831 Msa1034680:CDS
GGTGGAACCATTGATGGAAA+AGG 0.590288 7_1:-70237613 Msa1034680:CDS
TGAAGAAGGAGAACCTGCTA+AGG 0.593731 7_1:-70235562 Msa1034680:CDS
TTGCAATAGCAACTTGCAAG+AGG 0.593871 7_1:-70238489 Msa1034680:CDS
AGAGGAGGAATTGTCTTAGG+AGG 0.600709 7_1:+70238543 None:intergenic
TGGTCCACAGGTAATGTCTG+TGG 0.601877 7_1:+70236839 None:intergenic
CAGCAACTATTAGTTAATGG+TGG 0.608202 7_1:-70237634 Msa1034680:CDS
AAGTTAACTACCTGATGCCA+TGG 0.609029 7_1:+70236814 None:intergenic
TGATGACGATAGCGAATGAG+AGG 0.610518 7_1:+70238525 None:intergenic
CAACGTATGTAGTAATAAGT+GGG 0.610682 7_1:+70238465 None:intergenic
GAGGTATGGAACTAAGGAGG+GGG 0.611371 7_1:+70238687 None:intergenic
TGGTCATACCGATGACACAC+TGG 0.612135 7_1:-70238294 Msa1034680:intron
ATTGGTGATATGAATTCCAT+CGG 0.620342 7_1:+70237094 None:intergenic
GGGAATAGTCCTAACACCGA+TGG 0.628872 7_1:-70237110 Msa1034680:CDS
ATCGAGGTATGGAACTAAGG+AGG 0.629235 7_1:+70238684 None:intergenic
ACAGTGAAGATCAAAGACAT+TGG 0.636413 7_1:-70237675 Msa1034680:CDS
TCGGTGTTAGGACTATTCCC+TGG 0.642387 7_1:+70237113 None:intergenic
AGATTGTGTATTTATAGACA+AGG 0.643980 7_1:+70238711 None:intergenic
GTATCACCATCATCATAGGA+AGG 0.644782 7_1:+70238434 None:intergenic
CGAGGTATGGAACTAAGGAG+GGG 0.647138 7_1:+70238686 None:intergenic
TGTGTTTATGCAGGACTCTG+CGG 0.649850 7_1:-70235712 Msa1034680:intron
TGACGATAGCGAATGAGAGG+AGG 0.661829 7_1:+70238528 None:intergenic
TATTTCTATGAGTTGCAGCG+TGG 0.662487 7_1:+70235495 None:intergenic
ATGGAGCAACAGGCAGAGTG+TGG 0.668229 7_1:-70238845 Msa1034680:five_prime_UTR
ATGGAAAAGGAAACATATGG+TGG 0.670203 7_1:-70237600 Msa1034680:CDS
TCTCAGTATTGGAAGCTTGG+GGG 0.679058 7_1:-70236697 Msa1034680:intron
GTCTCAATGTGTCATCACCA+GGG 0.683510 7_1:-70237130 Msa1034680:CDS
TAGATGCACTTTGAAAGGTG+AGG 0.687852 7_1:+70238616 None:intergenic
TTAGCAAAAGCTATGTATCG+AGG 0.688155 7_1:+70238668 None:intergenic
AGGTATGGAACTAAGGAGGG+GGG 0.695636 7_1:+70238688 None:intergenic
GAAGCCACAGACATTACCTG+TGG 0.698968 7_1:-70236843 Msa1034680:CDS
GAGAACGTGAAGTGACACCA+TGG 0.725055 7_1:+70238357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAACAAAAAATATCT+TGG + chr7_1:70235918-70235937 None:intergenic 10.0%
!!! AAATTAAAGTTTAAAATTAC+CGG + chr7_1:70237550-70237569 None:intergenic 10.0%
!!! ACATATTTAAACTATTTTTA+AGG - chr7_1:70237719-70237738 Msa1034680:intron 10.0%
!!! TCTTATTTGATTAAATATAA+AGG + chr7_1:70238136-70238155 None:intergenic 10.0%
!! AAAATACAAAAGAACTATAA+TGG - chr7_1:70235565-70235584 Msa1034680:CDS 15.0%
!!! TTTGTTTTCAATTATAACAA+TGG - chr7_1:70235944-70235963 Msa1034680:intron 15.0%
!!! TTGTTTTCAATTATAACAAT+GGG - chr7_1:70235945-70235964 Msa1034680:intron 15.0%
!! CATACAAAATATTAAATTAG+TGG + chr7_1:70236035-70236054 None:intergenic 15.0%
!!! AACTTAAATTTTCCTATAAT+TGG - chr7_1:70236117-70236136 Msa1034680:intron 15.0%
!! ATAATTAGTTAATTAATCAC+TGG + chr7_1:70236318-70236337 None:intergenic 15.0%
!! TTATAATTTACTTAAAAGTG+TGG + chr7_1:70236359-70236378 None:intergenic 15.0%
!!! ATTGACTTGATTAAAATATT+GGG + chr7_1:70236608-70236627 None:intergenic 15.0%
!!! AATTGACTTGATTAAAATAT+TGG + chr7_1:70236609-70236628 None:intergenic 15.0%
!!! CTAACTAATTTTATTTTTGT+AGG - chr7_1:70236871-70236890 Msa1034680:CDS 15.0%
!! TATATATTTATAAAAGATGG+AGG + chr7_1:70237679-70237698 None:intergenic 15.0%
!!! TCCATCTTTTATAAATATAT+AGG - chr7_1:70237678-70237697 Msa1034680:CDS 15.0%
!!! TGTAAACATAAGATTTTTTA+TGG + chr7_1:70237858-70237877 None:intergenic 15.0%
!!! GAAATATTTTATTGATTTAG+TGG + chr7_1:70237915-70237934 None:intergenic 15.0%
!!! AATAAGACATAAATTTTCTT+TGG - chr7_1:70238149-70238168 Msa1034680:intron 15.0%
!! AAAAAAACCATGTAAAAAAA+TGG - chr7_1:70238291-70238310 Msa1034680:intron 15.0%
!!! TAATTTACCATTTTTTTACA+TGG + chr7_1:70238301-70238320 None:intergenic 15.0%
!! TCATAGAAATATTCAAATTA+AGG - chr7_1:70238649-70238668 Msa1034680:CDS 15.0%
!! TTCATATTAATATCCACATA+TGG + chr7_1:70235377-70235396 None:intergenic 20.0%
!! TACATTATTATTCAAGAACT+TGG - chr7_1:70235718-70235737 Msa1034680:intron 20.0%
!! ATTGTTAATGTCAAAGATTA+TGG - chr7_1:70235803-70235822 Msa1034680:intron 20.0%
!! TAAGAAAACCAAATTAGTAT+AGG + chr7_1:70236058-70236077 None:intergenic 20.0%
!! AGTAGATAATTATAATCTTG+AGG + chr7_1:70236224-70236243 None:intergenic 20.0%
!! AATATTTAATGTAACTAACC+TGG + chr7_1:70236292-70236311 None:intergenic 20.0%
!! AAATTTAATTGACAGATATC+TGG - chr7_1:70236402-70236421 Msa1034680:intron 20.0%
!! TGTTATAGATTTCATAATCA+AGG - chr7_1:70236820-70236839 Msa1034680:intron 20.0%
!!! TCATAATCAAGGATTTTAAT+TGG - chr7_1:70236831-70236850 Msa1034680:CDS 20.0%
!!! CAAAAAAAAGTACAAGAATT+AGG - chr7_1:70237136-70237155 Msa1034680:CDS 20.0%
!! TGATTTATATATCTCAGTAT+TGG - chr7_1:70237424-70237443 Msa1034680:intron 20.0%
!! TACATAATATATGCAAAGTT+CGG - chr7_1:70237620-70237639 Msa1034680:CDS 20.0%
!! GCCTATATATTTATAAAAGA+TGG + chr7_1:70237682-70237701 None:intergenic 20.0%
!!! ATTTAAAATAAGTGCATGTT+TGG - chr7_1:70237800-70237819 Msa1034680:intron 20.0%
!! TTACACATAAATGAGTTTAA+TGG - chr7_1:70237873-70237892 Msa1034680:CDS 20.0%
!! TACACATAAATGAGTTTAAT+GGG - chr7_1:70237874-70237893 Msa1034680:CDS 20.0%
!! ATTAAACACAATAATAGTGT+TGG - chr7_1:70238002-70238021 Msa1034680:intron 20.0%
!! TTGAATTCTTTATTGATCAT+AGG - chr7_1:70238097-70238116 Msa1034680:intron 20.0%
!!! TAATTCTGGTTGATTATTAT+GGG + chr7_1:70238259-70238278 None:intergenic 20.0%
!! CTACAAATTAATGTTGAATT+GGG + chr7_1:70238764-70238783 None:intergenic 20.0%
!! ACTACAAATTAATGTTGAAT+TGG + chr7_1:70238765-70238784 None:intergenic 20.0%
! ATATCCACATATGGATATAT+AGG + chr7_1:70235368-70235387 None:intergenic 25.0%
! AGATTGTGTATTTATAGACA+AGG + chr7_1:70235424-70235443 None:intergenic 25.0%
! ATATATAGATGCACTTTGAA+AGG + chr7_1:70235524-70235543 None:intergenic 25.0%
! TTTGTATGCCTATACTAATT+TGG - chr7_1:70236047-70236066 Msa1034680:intron 25.0%
!! GAGAAAAAGCATAAAAAAGT+TGG + chr7_1:70236681-70236700 None:intergenic 25.0%
! CTAAATTGTCGAGAAAATTT+AGG + chr7_1:70236755-70236774 None:intergenic 25.0%
! CTCAGTCGTTAAATTTAAAT+TGG - chr7_1:70236790-70236809 Msa1034680:intron 25.0%
! GATTGTATATCAATTGTAGA+TGG - chr7_1:70237253-70237272 Msa1034680:intron 25.0%
! ACATAATATATGCAAAGTTC+GGG - chr7_1:70237621-70237640 Msa1034680:CDS 25.0%
! GATAGATTAGTATATCAAAG+TGG + chr7_1:70237752-70237771 None:intergenic 25.0%
! AATATAAAGGTGAGTAAGTT+AGG + chr7_1:70238123-70238142 None:intergenic 25.0%
!!! ATAAATTTTCTTTGGTCTTG+CGG - chr7_1:70238157-70238176 Msa1034680:intron 25.0%
! CAAATTTCAGAACATTGAAA+TGG - chr7_1:70238219-70238238 Msa1034680:intron 25.0%
!! AATTCTGGTTGATTATTATG+GGG + chr7_1:70238258-70238277 None:intergenic 25.0%
!! GTAATTCTGGTTGATTATTA+TGG + chr7_1:70238260-70238279 None:intergenic 25.0%
!! TTATGATTTTGTGTTTATGC+AGG - chr7_1:70238411-70238430 Msa1034680:CDS 25.0%
! ATACTCTTAATATGTGAAGA+AGG - chr7_1:70238556-70238575 Msa1034680:CDS 25.0%
!! GAACTAATTGCATTTTTGTA+TGG + chr7_1:70238703-70238722 None:intergenic 25.0%
! ACATGTTTCATATTGTTGTA+AGG - chr7_1:70238841-70238860 Msa1034680:five_prime_UTR 25.0%
ATAGGTATGGAAGTTTAGTT+AGG + chr7_1:70235350-70235369 None:intergenic 30.0%
CACATATGGATATATAGGTA+TGG + chr7_1:70235363-70235382 None:intergenic 30.0%
CATACCTATATATCCATATG+TGG - chr7_1:70235361-70235380 Msa1034680:three_prime_UTR 30.0%
CAACGTATGTAGTAATAAGT+GGG + chr7_1:70235670-70235689 None:intergenic 30.0%
TCAACGTATGTAGTAATAAG+TGG + chr7_1:70235671-70235690 None:intergenic 30.0%
TAATGTATCACCATCATCAT+AGG + chr7_1:70235705-70235724 None:intergenic 30.0%
TCAAAGATTATGGAGCTAAA+GGG - chr7_1:70235813-70235832 Msa1034680:intron 30.0%
TTAATATACCAGTGTGTCAT+CGG + chr7_1:70235849-70235868 None:intergenic 30.0%
TGAATATTAAATGTCCCACA+TGG + chr7_1:70236143-70236162 None:intergenic 30.0%
ATGTGGGACATTTAATATTC+AGG - chr7_1:70236142-70236161 Msa1034680:intron 30.0%
TAATATTCAGGCATTCAAGA+AGG - chr7_1:70236154-70236173 Msa1034680:intron 30.0%
ACTGATATGTTAGATTTGCA+AGG + chr7_1:70236269-70236288 None:intergenic 30.0%
GTTCAGCAACTATTAGTTAA+TGG - chr7_1:70236495-70236514 Msa1034680:intron 30.0%
! TATGTTTCCTTTTCCATCAA+TGG + chr7_1:70236529-70236548 None:intergenic 30.0%
TTGATGGAAAAGGAAACATA+TGG - chr7_1:70236529-70236548 Msa1034680:intron 30.0%
! TCTAACATTTGATAGTTGCA+AGG - chr7_1:70236895-70236914 Msa1034680:intron 30.0%
CTTTAACATTAATCGAATCC+TGG + chr7_1:70236976-70236995 None:intergenic 30.0%
! ATTGGTGATATGAATTCCAT+CGG + chr7_1:70237041-70237060 None:intergenic 30.0%
!! GATTTTGATGTTTTGGGTAT+TGG + chr7_1:70237059-70237078 None:intergenic 30.0%
!! GCTAGAGATTTTGATGTTTT+GGG + chr7_1:70237065-70237084 None:intergenic 30.0%
!! AGCTAGAGATTTTGATGTTT+TGG + chr7_1:70237066-70237085 None:intergenic 30.0%
!! AAAATCTCTAGCTCTATCAT+AGG - chr7_1:70237073-70237092 Msa1034680:CDS 30.0%
!!! CTTTTCCTGTAATTTGTTTC+AGG - chr7_1:70237226-70237245 Msa1034680:CDS 30.0%
!! AAGATTTCTGGAACTACAAA+TGG - chr7_1:70237505-70237524 Msa1034680:intron 30.0%
ATGGAGTTAGAATTAAGACT+TGG - chr7_1:70237524-70237543 Msa1034680:intron 30.0%
CATAATATATGCAAAGTTCG+GGG - chr7_1:70237622-70237641 Msa1034680:CDS 30.0%
AGATTAGTATATCAAAGTGG+TGG + chr7_1:70237749-70237768 None:intergenic 30.0%
GTAAAGTAAATAGAGCAAAG+TGG - chr7_1:70237972-70237991 Msa1034680:intron 30.0%
! AATAGTGTTGGATCAATAGA+TGG - chr7_1:70238014-70238033 Msa1034680:intron 30.0%
! TTTTCTTGTCACAGTAATTC+TGG + chr7_1:70238273-70238292 None:intergenic 30.0%
GTAAGTAGCTATCTATATGT+TGG + chr7_1:70238384-70238403 None:intergenic 30.0%
AATGTTCAATTGTCTTACAC+AGG - chr7_1:70238604-70238623 Msa1034680:CDS 30.0%
ATGAAACATGTGACAAGTAA+TGG + chr7_1:70238832-70238851 None:intergenic 30.0%
AAAAGCTATGTATCGAGGTA+TGG + chr7_1:70235462-70235481 None:intergenic 35.0%
TTAGCAAAAGCTATGTATCG+AGG + chr7_1:70235467-70235486 None:intergenic 35.0%
GTCAAAGATTATGGAGCTAA+AGG - chr7_1:70235812-70235831 Msa1034680:intron 35.0%
CAAAGATTATGGAGCTAAAG+GGG - chr7_1:70235814-70235833 Msa1034680:intron 35.0%
! TTTTCCTATAATTGGCCATG+TGG - chr7_1:70236125-70236144 Msa1034680:intron 35.0%
TTTCCTATAATTGGCCATGT+GGG - chr7_1:70236126-70236145 Msa1034680:intron 35.0%
CAAATCTAACATATCAGTCC+AGG - chr7_1:70236271-70236290 Msa1034680:intron 35.0%
TGATCTTCACTGTAATCTGA+TGG + chr7_1:70236450-70236469 None:intergenic 35.0%
ACAGTGAAGATCAAAGACAT+TGG - chr7_1:70236457-70236476 Msa1034680:intron 35.0%
CAGCAACTATTAGTTAATGG+TGG - chr7_1:70236498-70236517 Msa1034680:intron 35.0%
CAACTATTAGTTAATGGTGG+TGG - chr7_1:70236501-70236520 Msa1034680:intron 35.0%
ATGGAAAAGGAAACATATGG+TGG - chr7_1:70236532-70236551 Msa1034680:intron 35.0%
ACAAATTCACGTTTCATTCC+AGG - chr7_1:70236955-70236974 Msa1034680:intron 35.0%
! ATATGAATTCCATCGGTGTT+AGG + chr7_1:70237034-70237053 None:intergenic 35.0%
! ATATCTCAGTATTGGAAGCT+TGG - chr7_1:70237432-70237451 Msa1034680:intron 35.0%
! TATCTCAGTATTGGAAGCTT+GGG - chr7_1:70237433-70237452 Msa1034680:intron 35.0%
AAAATCCAGGGACATTGTTT+CGG - chr7_1:70237462-70237481 Msa1034680:intron 35.0%
AGTTAGAATTAAGACTTGGC+CGG - chr7_1:70237528-70237547 Msa1034680:intron 35.0%
ACACTACAAGTACACTATAC+TGG - chr7_1:70238347-70238366 Msa1034680:CDS 35.0%
GGTACAACACATTGCTAATT+TGG + chr7_1:70238447-70238466 None:intergenic 35.0%
GTGTTGTACCAGAATATAAC+AGG - chr7_1:70238457-70238476 Msa1034680:CDS 35.0%
! CACTTTTGCCTGTTATATTC+TGG + chr7_1:70238468-70238487 None:intergenic 35.0%
CAGTGAAAAATTTCCATGCA+AGG - chr7_1:70238516-70238535 Msa1034680:CDS 35.0%
! TGCATTTTTATCTCCTTGCA+TGG + chr7_1:70238532-70238551 None:intergenic 35.0%
AGAGTGTGGTATAGAGACTT+TGG - chr7_1:70235301-70235320 Msa1034680:three_prime_UTR 40.0%
GAGTGTGGTATAGAGACTTT+GGG - chr7_1:70235302-70235321 Msa1034680:three_prime_UTR 40.0%
TGTATCGAGGTATGGAACTA+AGG + chr7_1:70235454-70235473 None:intergenic 40.0%
! TAGATGCACTTTGAAAGGTG+AGG + chr7_1:70235519-70235538 None:intergenic 40.0%
ATGAGAGGAGGAATTGTCTT+AGG + chr7_1:70235595-70235614 None:intergenic 40.0%
TTGCAATAGCAACTTGCAAG+AGG - chr7_1:70235643-70235662 Msa1034680:CDS 40.0%
GATTCACCTTCCTATGATGA+TGG - chr7_1:70235692-70235711 Msa1034680:CDS 40.0%
GTATCACCATCATCATAGGA+AGG + chr7_1:70235701-70235720 None:intergenic 40.0%
! GATTTTTCGTGCTTAGACCA+TGG - chr7_1:70235758-70235777 Msa1034680:intron 40.0%
TGGGAAGTAGTATGTGATTC+AGG - chr7_1:70236179-70236198 Msa1034680:intron 40.0%
GGGAAGTAGTATGTGATTCA+GGG - chr7_1:70236180-70236199 Msa1034680:intron 40.0%
CTCAAACCAATCAGATTCTC+TGG - chr7_1:70236242-70236261 Msa1034680:intron 40.0%
GAGCTATGTATACATACCGT+TGG + chr7_1:70236730-70236749 None:intergenic 40.0%
ACGACTGAGATTTGACTGAA+TGG + chr7_1:70236779-70236798 None:intergenic 40.0%
!! TCTAGCTCTATCATAGGAAC+TGG - chr7_1:70237079-70237098 Msa1034680:CDS 40.0%
CGTCACCTGAAACAAATTAC+AGG + chr7_1:70237234-70237253 None:intergenic 40.0%
AAGTTAACTACCTGATGCCA+TGG + chr7_1:70237321-70237340 None:intergenic 40.0%
! ATCTCAGTATTGGAAGCTTG+GGG - chr7_1:70237434-70237453 Msa1034680:intron 40.0%
AAATCCAGGGACATTGTTTC+GGG - chr7_1:70237463-70237482 Msa1034680:intron 40.0%
!! GTTTCGGGAGTATTAGTGAA+TGG - chr7_1:70237478-70237497 Msa1034680:intron 40.0%
GTGAATGGAGCTAAGATTTC+TGG - chr7_1:70237493-70237512 Msa1034680:intron 40.0%
!!! AAGATGGAGGAGACGTTTTT+TGG + chr7_1:70237666-70237685 None:intergenic 40.0%
ATGAGTTTAATGGGATCCTC+TGG - chr7_1:70237883-70237902 Msa1034680:CDS 40.0%
TTCATGAGAGCTACAGAGAT+CGG + chr7_1:70237937-70237956 None:intergenic 40.0%
!!! AATTTTCTTTGGTCTTGCGG+TGG - chr7_1:70238160-70238179 Msa1034680:intron 40.0%
CTGGTTGATTATTATGGGGT+TGG + chr7_1:70238254-70238273 None:intergenic 40.0%
TTGTTGCATAAAGCCTTAGC+AGG + chr7_1:70238586-70238605 None:intergenic 40.0%
! TATTTCTATGAGTTGCAGCG+TGG + chr7_1:70238640-70238659 None:intergenic 40.0%
CAAACGTTGTATGGAGCAAC+AGG - chr7_1:70235277-70235296 Msa1034680:three_prime_UTR 45.0%
TCGAGGTATGGAACTAAGGA+GGG + chr7_1:70235450-70235469 None:intergenic 45.0%
ATCGAGGTATGGAACTAAGG+AGG + chr7_1:70235451-70235470 None:intergenic 45.0%
AGAGGAGGAATTGTCTTAGG+AGG + chr7_1:70235592-70235611 None:intergenic 45.0%
! TGATGACGATAGCGAATGAG+AGG + chr7_1:70235610-70235629 None:intergenic 45.0%
GATTATGGAGCTAAAGGGGA+TGG - chr7_1:70235818-70235837 Msa1034680:intron 45.0%
TGTCCCACATGGCCAATTAT+AGG + chr7_1:70236132-70236151 None:intergenic 45.0%
TTCAGGCATTCAAGAAGGCT+TGG - chr7_1:70236159-70236178 Msa1034680:intron 45.0%
TCAGGCATTCAAGAAGGCTT+GGG - chr7_1:70236160-70236179 Msa1034680:intron 45.0%
!! TTCAGGGCAAGCAGTTTTAG+TGG - chr7_1:70236196-70236215 Msa1034680:intron 45.0%
CAAGGACCAGAGAATCTGAT+TGG + chr7_1:70236251-70236270 None:intergenic 45.0%
!! AATGGTGGTGGAACCATTGA+TGG - chr7_1:70236513-70236532 Msa1034680:intron 45.0%
GGTGGAACCATTGATGGAAA+AGG - chr7_1:70236519-70236538 Msa1034680:intron 45.0%
GGTGGCAAAACTCATGCAAA+AGG - chr7_1:70236550-70236569 Msa1034680:intron 45.0%
! TCTCTTTTTGCAGCCTTGCA+AGG - chr7_1:70236699-70236718 Msa1034680:intron 45.0%
GTCTCAATGTGTCATCACCA+GGG - chr7_1:70237002-70237021 Msa1034680:intron 45.0%
! TCTCAGTATTGGAAGCTTGG+GGG - chr7_1:70237435-70237454 Msa1034680:intron 45.0%
AAAGCTCACGAGGACAAAGA+AGG + chr7_1:70237581-70237600 None:intergenic 45.0%
!!! ATGGAGGAGACGTTTTTTGG+TGG + chr7_1:70237663-70237682 None:intergenic 45.0%
! GATTTAGTGGATCACACCAG+AGG + chr7_1:70237902-70237921 None:intergenic 45.0%
TCTTGCGGTGGTTAAATGCA+GGG - chr7_1:70238172-70238191 Msa1034680:intron 45.0%
TGTGTTTATGCAGGACTCTG+CGG - chr7_1:70238420-70238439 Msa1034680:CDS 45.0%
TGAAGAAGGAGAACCTGCTA+AGG - chr7_1:70238570-70238589 Msa1034680:CDS 45.0%
AGGTATGGAACTAAGGAGGG+GGG + chr7_1:70235447-70235466 None:intergenic 50.0%
GAGGTATGGAACTAAGGAGG+GGG + chr7_1:70235448-70235467 None:intergenic 50.0%
CGAGGTATGGAACTAAGGAG+GGG + chr7_1:70235449-70235468 None:intergenic 50.0%
TGACGATAGCGAATGAGAGG+AGG + chr7_1:70235607-70235626 None:intergenic 50.0%
GAGAACGTGAAGTGACACCA+TGG + chr7_1:70235778-70235797 None:intergenic 50.0%
TGGTCATACCGATGACACAC+TGG - chr7_1:70235838-70235857 Msa1034680:intron 50.0%
CGTCTCAATGTGTCATCACC+AGG - chr7_1:70237001-70237020 Msa1034680:intron 50.0%
!! TCGGTGTTAGGACTATTCCC+TGG + chr7_1:70237022-70237041 None:intergenic 50.0%
GGGAATAGTCCTAACACCGA+TGG - chr7_1:70237022-70237041 Msa1034680:intron 50.0%
GAAGCCACAGACATTACCTG+TGG - chr7_1:70237289-70237308 Msa1034680:intron 50.0%
TGGTCCACAGGTAATGTCTG+TGG + chr7_1:70237296-70237315 None:intergenic 50.0%
ACAGACATTACCTGTGGACC+AGG - chr7_1:70237295-70237314 Msa1034680:intron 50.0%
TACTCCCGAAACAATGTCCC+TGG + chr7_1:70237470-70237489 None:intergenic 50.0%
TCACGAGGACAAAGAAGGAG+GGG + chr7_1:70237576-70237595 None:intergenic 50.0%
CTCACGAGGACAAAGAAGGA+GGG + chr7_1:70237577-70237596 None:intergenic 50.0%
CTAACTGAGCAAAGCTCACG+AGG + chr7_1:70237591-70237610 None:intergenic 50.0%
AAAGTTCGGGGTTCAAACCC+CGG - chr7_1:70237634-70237653 Msa1034680:CDS 50.0%
!!! AGACGTTTTTTGGTGGTGGC+CGG + chr7_1:70237656-70237675 None:intergenic 50.0%
!!! GAGGAGACGTTTTTTGGTGG+TGG + chr7_1:70237660-70237679 None:intergenic 50.0%
GTCTTGCGGTGGTTAAATGC+AGG - chr7_1:70238171-70238190 Msa1034680:intron 50.0%
GGTTAAATGCAGGGAGGTTC+AGG - chr7_1:70238181-70238200 Msa1034680:intron 50.0%
ATGGAGCAACAGGCAGAGTG+TGG - chr7_1:70235287-70235306 Msa1034680:three_prime_UTR 55.0%
GCCTTGCAAGGATGCTCCAA+CGG - chr7_1:70236711-70236730 Msa1034680:intron 55.0%
! ACCGTTGGAGCATCCTTGCA+AGG + chr7_1:70236715-70236734 None:intergenic 55.0%
ATTACCTGTGGACCAGGCCA+TGG - chr7_1:70237301-70237320 Msa1034680:intron 55.0%
AACTACCTGATGCCATGGCC+TGG + chr7_1:70237316-70237335 None:intergenic 55.0%
! AGTATTGGAAGCTTGGGGGC+TGG - chr7_1:70237439-70237458 Msa1034680:intron 55.0%
CTTGGGGGCTGGAAAATCCA+GGG - chr7_1:70237450-70237469 Msa1034680:intron 55.0%
GCTCACGAGGACAAAGAAGG+AGG + chr7_1:70237578-70237597 None:intergenic 55.0%
!!! ACGTTTTTTGGTGGTGGCCG+GGG + chr7_1:70237654-70237673 None:intergenic 55.0%
!!! GACGTTTTTTGGTGGTGGCC+GGG + chr7_1:70237655-70237674 None:intergenic 55.0%
TGCGGTGGTTAAATGCAGGG+AGG - chr7_1:70238175-70238194 Msa1034680:intron 55.0%
GCTTGGGGGCTGGAAAATCC+AGG - chr7_1:70237449-70237468 Msa1034680:intron 60.0%
GATGCCATGGCCTGGTCCAC+AGG + chr7_1:70237308-70237327 None:intergenic 65.0%
GTGGACCAGGCCATGGCATC+AGG - chr7_1:70237308-70237327 Msa1034680:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70235276 70238878 70235276 ID=Msa1034680;Name=Msa1034680
chr7_1 mRNA 70235276 70238878 70235276 ID=Msa1034680-mRNA-1;Parent=Msa1034680;Name=Msa1034680-mRNA-1;_AED=0.28;_eAED=0.28;_QI=116|0.87|0.88|1|0.75|0.88|9|224|489
chr7_1 exon 70235276 70235721 70235276 ID=Msa1034680-mRNA-1:exon:16783;Parent=Msa1034680-mRNA-1
chr7_1 exon 70235842 70235961 70235842 ID=Msa1034680-mRNA-1:exon:16782;Parent=Msa1034680-mRNA-1
chr7_1 exon 70236662 70236713 70236662 ID=Msa1034680-mRNA-1:exon:16781;Parent=Msa1034680-mRNA-1
chr7_1 exon 70236825 70236906 70236825 ID=Msa1034680-mRNA-1:exon:16780;Parent=Msa1034680-mRNA-1
chr7_1 exon 70237054 70237261 70237054 ID=Msa1034680-mRNA-1:exon:16779;Parent=Msa1034680-mRNA-1
chr7_1 exon 70237422 70237442 70237422 ID=Msa1034680-mRNA-1:exon:16778;Parent=Msa1034680-mRNA-1
chr7_1 exon 70237570 70237737 70237570 ID=Msa1034680-mRNA-1:exon:16777;Parent=Msa1034680-mRNA-1
chr7_1 exon 70237862 70237990 70237862 ID=Msa1034680-mRNA-1:exon:16776;Parent=Msa1034680-mRNA-1
chr7_1 exon 70238295 70238878 70238295 ID=Msa1034680-mRNA-1:exon:16775;Parent=Msa1034680-mRNA-1
chr7_1 five_prime_UTR 70238763 70238878 70238763 ID=Msa1034680-mRNA-1:five_prime_utr;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70238295 70238762 70238295 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70237862 70237990 70237862 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70237570 70237737 70237570 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70237422 70237442 70237422 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70237054 70237261 70237054 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70236825 70236906 70236825 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70236662 70236713 70236662 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70235842 70235961 70235842 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 CDS 70235500 70235721 70235500 ID=Msa1034680-mRNA-1:cds;Parent=Msa1034680-mRNA-1
chr7_1 three_prime_UTR 70235276 70235499 70235276 ID=Msa1034680-mRNA-1:three_prime_utr;Parent=Msa1034680-mRNA-1
Gene Sequence

>Msa1034680

ATGAAAAGCAAACATGATCTTATTAATTTCCTTGTCTATAAATACACAATCTCCCCCCTCCTTAGTTCCATACCTCGATACATAGCTTTTGCTAAATATATTCTCATCAAACAATTATATTATTCCTCACCTTTCAAAGTGCATCTATATATTTTTCTCAATATATATATAGTAAAATACAAAAGAACTATAATGGTCCTCCTAAGACAATTCCTCCTCTCATTCGCTATCGTCATCATTTCATTTGTTGCTTGCAATAGCAACTTGCAAGAGGACCCACTTATTACTACATACGTTGATGATTCACCTTCCTATGATGATGGTGATACATTATTATTCAAGAACTTGGTTGAGCAAAACACAAATGATTTTTCGTGCTTAGACCATGGTGTCACTTCACGTTCTCTTAAAATTGTTAATGTCAAAGATTATGGAGCTAAAGGGGATGGTCATACCGATGACACACTGGCATTCAAGAAGGCTTGGGAAGTAGTATGTGATTCAGGGCAAGCAGTTTTAGTGGCACCTCAAGATTATAATTATCTACTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTAACATATCAGTCCAGATATCTGGAAGTCTTGAAGCATCAGATAATCCATCAGATTACAGTGAAGATCAAAGACATTGGCTTGTATTTGAGCAAGTTCAGCAACTATTAGTTAATGGTGGTGGAACCATTGATGGAAAAGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGAAACCTTGCAAGGATGCTCCAACGGCTCTAACATTTGATAGTTGCAAGGACTTAATAGTTGACGATTTGACAATACAAAATGCGCAACAAATTCACGTTTCATTCCAGGATTCGATTAATGTTAAAGCTTCTCGTCTCAATGTGTCATCACCAGGGAATAGTCCTAACACCGATGGAATTCATATCACCAATACCCAAAACATCAAAATCTCTAGCTCTATCATAGGAACTGGTGACGATTGTATATCAATTGTAGATGGATCTAGTAATGTAGAAGCCACAGACATTACCTGTGGACCAGGCCATGGCATCAGTATTGGAAGCTTGGGGGCTGGAAAATCCAGGGACATTGTTTCGGGAGTATTAGGAGGTTCAGGAAGTGCTAGCAACATCAAATTTCAGAACATTGAAATGGACAATGTGACCAACCCCATAATAATCAACCAGAATTACTGTGACAAGAAAAAAAAACCATGTAAAAAAATGGACTCTGCGGTCCAAATTAGCAATGTGTTGTACCAGAATATAACAGGCAAAAGTGCTTCTGATGTAGCTGTAAAGTTTGATTGCAGTGAAAAATTTCCATGCAAGGAGATAAAAATGCAAAACATACTCTTAATATGTGAAGAAGGAGAACCTGCTAAGGCTTTATGCAACAATGTTCAATTGTCTTACACAGGAAATGTTAATCCACGCTGCAACTCATAG
Protein sequence

>Msa1034680

MKSKHDLINFLVYKYTISPLLSSIPRYIAFAKYILIKQLYYSSPFKVHLYIFLNIYIVKYKRTIMVLLRQFLLSFAIVIISFVACNSNLQEDPLITTYVDDSPSYDDGDTLLFKNLVEQNTNDFSCLDHGVTSRSLKIVNVKDYGAKGDGHTDDTLAFKKAWEVVCDSGQAVLVAPQDYNYLLKPIRFSGPCKSNISVQISGSLEASDNPSDYSEDQRHWLVFEQVQQLLVNGGGTIDGKGNIWWQNSCKRNKKKPCKDAPTALTFDSCKDLIVDDLTIQNAQQIHVSFQDSINVKASRLNVSSPGNSPNTDGIHITNTQNIKISSSIIGTGDDCISIVDGSSNVEATDITCGPGHGISIGSLGAGKSRDIVSGVLGGSGSASNIKFQNIEMDNVTNPIIINQNYCDKKKKPCKKMDSAVQISNVLYQNITGKSASDVAVKFDCSEKFPCKEIKMQNILLICEEGEPAKALCNNVQLSYTGNVNPRCNS*