AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1114990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1114990 MtrunA17_Chr7g0257721 93.373 332 21 1 63 393 1 332 0.0 610
Msa1114990 MtrunA17_Chr1g0173451 59.732 447 143 8 63 483 1 436 5.59e-177 504
Msa1114990 MtrunA17_Chr7g0257701 67.792 385 71 5 63 411 1 368 1.78e-167 478
Msa1114990 MtrunA17_Chr4g0020771 46.491 456 200 8 59 485 4 444 6.36e-127 376
Msa1114990 MtrunA17_Chr3g0089021 46.429 448 202 5 63 483 1 437 6.12e-121 361
Msa1114990 MtrunA17_Chr2g0332801 45.380 368 178 3 136 480 58 425 1.17e-104 320
Msa1114990 MtrunA17_Chr8g0365901 43.052 367 186 3 136 480 64 429 5.73e-104 318
Msa1114990 MtrunA17_Chr6g0449961 42.033 364 175 6 122 455 21 378 6.32e-88 276
Msa1114990 MtrunA17_Chr4g0052621 41.292 356 178 6 136 461 64 418 2.76e-84 267
Msa1114990 MtrunA17_Chr1g0194231 37.989 358 189 6 136 461 80 436 4.85e-79 254
Msa1114990 MtrunA17_Chr5g0413411 37.808 365 179 5 138 455 122 485 1.90e-76 249
Msa1114990 MtrunA17_Chr7g0270361 37.255 357 192 6 136 461 66 421 3.07e-76 246
Msa1114990 MtrunA17_Chr4g0043661 37.533 381 191 8 138 485 24 390 1.39e-74 240
Msa1114990 MtrunA17_Chr2g0332971 38.841 345 183 6 138 455 29 372 1.50e-73 238
Msa1114990 MtrunA17_Chr4g0043431 40.761 368 188 9 138 481 36 397 4.21e-73 236
Msa1114990 MtrunA17_Chr3g0121891 39.058 361 195 7 129 467 21 378 2.37e-72 234
Msa1114990 MtrunA17_Chr2g0303941 38.043 368 198 7 137 481 28 388 7.48e-72 233
Msa1114990 MtrunA17_Chr5g0418411 37.265 373 204 5 124 471 16 383 2.09e-71 232
Msa1114990 MtrunA17_Chr5g0413141 36.620 355 195 5 127 455 52 402 4.46e-71 233
Msa1114990 MtrunA17_Chr7g0228411 36.020 397 199 11 124 471 27 417 2.82e-70 230
Msa1114990 MtrunA17_Chr1g0195221 35.233 386 215 10 123 480 24 402 4.95e-70 229
Msa1114990 MtrunA17_Chr3g0121881 37.568 370 196 7 131 473 27 388 5.51e-70 228
Msa1114990 MtrunA17_Chr8g0337571 39.665 358 182 9 136 471 30 375 2.37e-69 226
Msa1114990 MtrunA17_Chr2g0293681 39.881 336 171 5 126 432 57 390 2.92e-69 227
Msa1114990 MtrunA17_Chr8g0365891 34.688 369 186 5 138 455 108 472 1.28e-68 228
Msa1114990 MtrunA17_Chr4g0067631 36.729 373 205 9 135 480 50 418 1.55e-68 225
Msa1114990 MtrunA17_Chr4g0018151 37.669 369 191 6 130 471 71 427 3.07e-68 225
Msa1114990 MtrunA17_Chr2g0295451 41.343 283 157 6 135 411 51 330 6.26e-68 222
Msa1114990 MtrunA17_Chr8g0348981 38.395 349 182 7 135 455 25 368 9.01e-67 220
Msa1114990 MtrunA17_Chr8g0337581 37.604 359 189 10 136 471 30 376 3.48e-66 218
Msa1114990 MtrunA17_Chr6g0461181 36.203 395 185 10 138 470 31 420 5.48e-66 219
Msa1114990 MtrunA17_Chr7g0230891 37.228 368 199 8 138 481 38 397 9.21e-66 217
Msa1114990 MtrunA17_Chr1g0150291 34.973 366 213 7 137 481 45 406 2.21e-65 216
Msa1114990 MtrunA17_Chr1g0150301 36.236 356 202 7 137 471 27 378 2.55e-63 211
Msa1114990 MtrunA17_Chr2g0307811 32.979 376 219 8 136 484 24 393 4.11e-57 194
Msa1114990 MtrunA17_Chr3g0100091 35.714 364 172 7 138 485 31 348 2.51e-56 191
Msa1114990 MtrunA17_Chr7g0257711 79.661 118 2 1 394 489 3 120 3.69e-56 182
Msa1114990 MtrunA17_Chr2g0291841 37.082 329 174 9 179 481 38 359 2.27e-54 186
Msa1114990 MtrunA17_Chr2g0307831 30.667 375 229 7 136 484 24 393 7.08e-54 186
Msa1114990 MtrunA17_Chr2g0307821 30.667 375 229 7 136 484 24 393 7.08e-54 186
Msa1114990 MtrunA17_Chr5g0447901 36.786 280 169 5 136 411 24 299 8.90e-53 181
Msa1114990 MtrunA17_Chr1g0149241 33.149 362 182 9 133 471 24 348 3.67e-51 177
Msa1114990 MtrunA17_Chr8g0337521 40.530 264 133 8 136 393 30 275 4.93e-50 173
Msa1114990 MtrunA17_Chr5g0425811 36.122 263 153 7 154 411 2 254 1.11e-49 171
Msa1114990 MtrunA17_Chr8g0336481 37.643 263 136 4 196 439 14 267 1.88e-46 162
Msa1114990 MtrunA17_Chr7g0273191 54.745 137 62 0 239 375 2 138 4.11e-45 155
Msa1114990 MtrunA17_Chr8g0337511 38.655 238 125 3 262 481 5 239 6.66e-43 152
Msa1114990 MtrunA17_Chr8g0337601 40.529 227 117 3 262 471 2 227 3.58e-41 147
Msa1114990 MtrunA17_Chr3g0093011 37.143 245 129 3 261 480 13 257 7.40e-40 144
Msa1114990 MtrunA17_Chr8g0337551 50.000 130 65 0 264 393 7 136 6.47e-30 114
Msa1114990 MtrunA17_Chr8g0337351 46.809 141 74 1 272 411 1 141 4.63e-28 110
Msa1114990 MtrunA17_Chr3g0093021 40.800 125 68 5 132 254 22 142 5.57e-22 92.8
Msa1114990 MtrunA17_Chr8g0337541 37.500 120 66 6 136 249 30 146 1.76e-18 82.4
Msa1114990 MtrunA17_Chr5g0442221 25.141 354 207 14 137 453 44 376 7.77e-18 85.9
Msa1114990 MtrunA17_Chr4g0070281 23.158 380 212 14 136 453 74 435 1.13e-15 79.3
Msa1114990 MtrunA17_Chr7g0248451 23.628 419 220 15 137 483 55 445 3.16e-15 77.8
Msa1114990 MtrunA17_Chr3g0130251 24.926 337 165 13 129 410 69 372 3.31e-15 77.8
Msa1114990 MtrunA17_Chr2g0330221 26.875 160 109 4 153 309 39 193 3.54e-15 74.3
Msa1114990 MtrunA17_Chr2g0301091 22.895 380 213 15 136 453 55 416 3.16e-14 74.7
Msa1114990 MtrunA17_Chr1g0193961 27.829 327 186 14 129 420 38 349 5.11e-14 74.3
Msa1114990 MtrunA17_Chr3g0095221 23.881 335 215 12 109 411 17 343 5.37e-14 73.9
Msa1114990 MtrunA17_Chr8g0373171 43.529 85 48 0 262 346 7 91 1.05e-13 67.8
Msa1114990 MtrunA17_Chr8g0387391 25.574 305 186 11 137 409 44 339 2.63e-13 72.0
Msa1114990 MtrunA17_Chr7g0255311 25.075 335 202 12 109 410 41 359 6.31e-13 70.9
Msa1114990 MtrunA17_Chr1g0202641 24.194 372 215 13 139 455 57 416 8.54e-13 70.9
Msa1114990 MtrunA17_Chr1g0202641 25.000 400 227 15 139 480 557 941 1.10e-11 67.4
Msa1114990 MtrunA17_Chr7g0270821 28.267 329 179 18 129 418 38 348 1.31e-12 69.7
Msa1114990 MtrunA17_Chr8g0348491 23.133 415 222 15 137 481 55 442 1.48e-12 69.7
Msa1114990 MtrunA17_Chr4g0067811 22.901 393 228 12 137 470 40 416 3.40e-12 68.6
Msa1114990 MtrunA17_Chr1g0202651 23.387 372 218 11 139 455 57 416 8.63e-12 67.4
Msa1114990 MtrunA17_Chr1g0202621 26.573 286 168 12 127 390 39 304 4.18e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1114990 AT3G07970.1 48.770 447 189 10 63 482 5 438 2.66e-132 390
Msa1114990 AT3G57510.1 46.396 444 200 8 63 482 1 430 1.79e-128 380
Msa1114990 AT2G41850.1 54.255 376 143 5 132 484 63 432 2.14e-126 375
Msa1114990 AT1G70500.1 38.961 462 229 7 44 483 4 434 4.02e-105 322
Msa1114990 AT1G23460.2 44.414 367 181 3 136 480 42 407 1.17e-103 317
Msa1114990 AT1G23460.1 44.414 367 181 3 136 480 66 431 1.74e-103 317
Msa1114990 AT1G80170.1 41.878 394 198 5 118 480 27 420 1.10e-101 312
Msa1114990 AT1G80170.2 45.775 284 145 3 118 392 27 310 1.17e-85 267
Msa1114990 AT5G14650.1 40.588 340 177 5 137 455 51 386 1.24e-80 257
Msa1114990 AT1G56710.1 39.385 358 184 6 136 461 47 403 3.62e-80 256
Msa1114990 AT1G60590.1 38.315 368 176 5 138 455 124 490 4.75e-79 256
Msa1114990 AT1G02460.1 39.612 361 182 7 136 461 88 447 1.13e-78 254
Msa1114990 AT1G10640.1 38.587 368 178 5 135 455 117 483 2.44e-78 254
Msa1114990 AT3G15720.3 38.420 367 188 6 137 475 23 379 7.25e-78 251
Msa1114990 AT3G15720.1 38.420 367 188 6 137 475 24 380 7.60e-78 251
Msa1114990 AT4G18180.1 36.480 392 204 10 133 483 35 422 1.17e-76 247
Msa1114990 AT1G48100.1 37.921 356 190 5 136 461 79 433 9.73e-76 246
Msa1114990 AT3G15720.2 37.602 367 188 6 137 475 23 376 1.19e-74 242
Msa1114990 AT1G78400.1 36.658 371 206 6 135 480 33 399 2.44e-74 240
Msa1114990 AT2G43890.1 37.228 368 199 8 138 481 30 389 1.60e-73 238
Msa1114990 AT5G44840.1 36.944 360 197 6 135 470 22 375 2.95e-73 237
Msa1114990 AT4G01890.1 37.875 367 186 9 125 456 59 418 4.32e-73 239
Msa1114990 AT5G27530.1 38.398 362 182 5 135 471 51 396 8.33e-73 238
Msa1114990 AT5G17200.1 36.815 383 187 6 136 473 38 410 1.03e-72 236
Msa1114990 AT4G35670.1 39.607 356 186 5 138 470 25 374 1.08e-72 235
Msa1114990 AT1G05660.1 36.757 370 201 8 136 480 27 388 3.00e-72 234
Msa1114990 AT1G17150.1 37.867 375 201 9 135 482 31 400 3.06e-72 234
Msa1114990 AT3G26610.1 39.344 366 188 6 136 469 66 429 5.28e-72 236
Msa1114990 AT2G33160.1 38.158 380 199 9 131 480 26 399 8.59e-72 240
Msa1114990 AT1G05650.1 36.486 370 202 8 136 480 27 388 2.37e-71 232
Msa1114990 AT2G43880.1 36.413 368 202 8 138 481 32 391 2.95e-69 226
Msa1114990 AT2G43860.1 39.227 362 188 9 137 473 33 387 4.82e-69 226
Msa1114990 AT1G02790.1 36.340 377 203 11 136 482 51 420 4.91e-69 227
Msa1114990 AT4G32380.1 36.416 346 185 6 136 453 25 363 1.18e-68 227
Msa1114990 AT5G14650.2 43.191 257 142 3 137 392 51 304 4.36e-68 221
Msa1114990 AT2G43870.1 36.216 370 203 10 138 482 22 383 2.45e-67 221
Msa1114990 AT3G59850.2 37.398 369 197 10 138 480 68 428 4.95e-67 222
Msa1114990 AT3G59850.1 37.398 369 197 10 138 480 24 384 1.22e-66 219
Msa1114990 AT1G43080.1 34.656 378 210 9 135 481 29 400 7.18e-66 218
Msa1114990 AT1G43090.1 34.584 373 207 9 135 476 29 395 1.85e-65 218
Msa1114990 AT4G13760.1 34.392 378 211 9 135 481 29 400 3.94e-65 216
Msa1114990 AT4G32380.2 36.842 323 174 6 136 453 25 322 5.76e-65 216
Msa1114990 AT2G15460.1 34.656 378 210 9 135 481 29 400 7.84e-65 215
Msa1114990 AT1G43100.1 34.316 373 208 9 135 476 29 395 3.05e-64 215
Msa1114990 AT5G39910.1 34.699 366 183 6 136 481 35 364 2.70e-63 210
Msa1114990 AT2G15450.1 35.447 347 191 7 135 453 29 370 3.13e-63 211
Msa1114990 AT3G15720.4 37.037 324 167 5 179 475 3 316 4.79e-63 210
Msa1114990 AT3G07840.1 32.891 377 223 6 137 488 21 392 4.90e-63 211
Msa1114990 AT2G40310.1 33.687 377 215 8 135 481 29 400 8.00e-63 210
Msa1114990 AT1G65570.1 36.658 371 200 11 137 480 31 393 1.91e-61 206
Msa1114990 AT2G15470.1 34.870 347 193 7 135 453 29 370 1.97e-61 206
Msa1114990 AT3G14040.1 36.119 371 203 9 137 480 71 434 2.70e-61 207
Msa1114990 AT3G07830.1 34.254 362 205 8 150 484 34 389 9.28e-61 204
Msa1114990 AT3G07850.1 35.849 371 204 9 137 480 70 433 3.24e-60 204
Msa1114990 AT1G80140.1 35.435 333 182 7 174 480 7 332 4.59e-60 201
Msa1114990 AT5G44830.1 35.241 332 175 5 163 470 1 316 9.99e-60 199
Msa1114990 AT2G43880.2 38.652 282 163 6 133 411 27 301 1.12e-59 199
Msa1114990 AT2G26620.1 34.043 376 213 9 135 481 29 398 1.71e-59 201
Msa1114990 AT3G07820.1 33.613 357 207 6 150 481 33 384 4.72e-59 200
Msa1114990 AT4G32370.1 40.559 286 151 9 135 409 32 309 9.00e-59 197
Msa1114990 AT5G48140.1 33.069 378 220 7 137 488 21 391 1.28e-58 199
Msa1114990 AT4G32375.1 37.786 262 134 2 214 453 9 263 6.38e-52 182
Msa1114990 AT4G35670.2 39.405 269 138 2 218 467 2 264 8.66e-52 177
Msa1114990 AT4G23820.1 26.752 314 192 10 128 410 30 336 1.60e-17 85.1
Msa1114990 AT1G19170.1 23.430 414 237 17 131 481 80 476 3.79e-16 81.3
Msa1114990 AT3G42950.1 24.079 407 229 16 136 480 65 453 1.83e-15 79.3
Msa1114990 AT3G62110.1 26.984 378 207 18 137 467 43 398 1.18e-14 76.6
Msa1114990 AT3G62110.2 26.984 378 207 18 137 467 43 398 1.18e-14 76.6
Msa1114990 AT5G41870.1 24.932 365 226 14 128 459 34 383 1.13e-13 73.6
Msa1114990 AT4G33440.1 23.853 327 168 10 136 410 71 368 1.74e-13 72.8
Msa1114990 AT3G48950.1 22.494 409 229 15 139 481 47 433 6.34e-13 71.2
Msa1114990 AT2G23900.1 24.190 401 232 16 139 481 58 444 6.18e-12 68.2
Msa1114990 AT4G23500.1 24.837 306 187 12 137 409 68 363 3.47e-11 65.9

Find 111 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACAACACATTGCTAATT+TGG 0.092906 7_3:+62007876 None:intergenic
GTGAATGGAGCTAAGATTTC+TGG 0.145479 7_3:-62009314 Msa1114990:CDS
TGGGAAGTAGTATGTGATTC+AGG 0.267912 7_3:-62010587 Msa1114990:CDS
AAATTTAATTGTCAGATATC+TGG 0.291470 7_3:-62010364 Msa1114990:intron
GTTCAGCAACTATTAGTTAA+TGG 0.294863 7_3:-62010271 Msa1114990:CDS
AAATCCAAGGACATCGTTTC+GGG 0.299515 7_3:-62009344 Msa1114990:CDS
ACTACAAATTAATGTTCAAT+TGG 0.300538 7_3:+62007558 None:intergenic
ATTGTTAATGTCAAAGATTA+TGG 0.321747 7_3:-62010963 Msa1114990:CDS
GGTTAAATGCAGGGAGGTTC+AGG 0.324538 7_3:-62008423 Msa1114990:intron
TCACAGAAATATACAAATTA+AGG 0.339722 7_3:-62007671 Msa1114990:exon
CAAATCTAACATATCAGTTC+AGG 0.357768 7_3:-62010495 Msa1114990:intron
ATATCCACATATGGATATAT+AGG 0.368390 7_3:+62011395 None:intergenic
ACAAATTCACGTTTCATTCC+AGG 0.368923 7_3:-62009823 Msa1114990:CDS
ATGAGAGGAGGAATTGTCTT+AGG 0.383327 7_3:+62011174 None:intergenic
TATCTCAGTATTGGAAGCTT+GGG 0.384966 7_3:-62009374 Msa1114990:intron
CAAATTTCAGAACATTGAAA+TGG 0.394222 7_3:-62008385 Msa1114990:CDS
TTTATGGAGCAAACGTTGTA+TGG 0.398145 7_3:-62011492 None:intergenic
AAGATTTCTGGAACTACAAA+TGG 0.398447 7_3:-62009302 Msa1114990:CDS
GTGGACCAGGCCATGGCATC+AGG 0.404513 7_3:-62009475 Msa1114990:intron
TTCATATTAATATCCACATA+TGG 0.410071 7_3:+62011386 None:intergenic
ATAGGTATGGAAGTTTAGTT+AGG 0.413211 7_3:+62011413 None:intergenic
GTCAAAGATTATGGAGCTAA+AGG 0.414898 7_3:-62010954 Msa1114990:CDS
AAAATCCAAGGACATCGTTT+CGG 0.414961 7_3:-62009345 Msa1114990:CDS
CAAGGACCAGAGAATCTGAT+TGG 0.415737 7_3:+62010518 None:intergenic
AAAATCTCTAGCTCTATCAT+AGG 0.416238 7_3:-62009705 Msa1114990:CDS
TCAAAGATTATGGAGCTAAA+GGG 0.422051 7_3:-62010953 Msa1114990:CDS
GATTGTATATCAATTGTAGA+TGG 0.423588 7_3:-62009530 Msa1114990:CDS
ATATGAATTCCATCGGTGTT+AGG 0.428068 7_3:+62009747 None:intergenic
AAAATACAAAAGAACTATAA+TGG 0.434958 7_3:-62011201 Msa1114990:CDS
ACATGTTTCATATTGTTGTA+AGG 0.437458 7_3:-62007479 Msa1114990:three_prime_UTR
ATATCTCAGTATTGGAAGCT+TGG 0.439364 7_3:-62009375 Msa1114990:intron
TTCAGGCATTCAAGAAGGCT+TGG 0.439440 7_3:-62010607 Msa1114990:intron
CTCAAACCAATCAGATTCTC+TGG 0.441568 7_3:-62010524 Msa1114990:CDS
GTGTTGTACCAGAATATAAC+AGG 0.441587 7_3:-62007863 Msa1114990:CDS
TACATTATTATTCAAGAACT+TGG 0.444587 7_3:-62011048 Msa1114990:CDS
TAATGTATCACCATCATCAT+AGG 0.445190 7_3:+62011064 None:intergenic
CGTCTCAATGTGTCATCACC+AGG 0.449500 7_3:-62009777 Msa1114990:CDS
CAAACGTTGTATGGAGCAAC+AGG 0.454334 7_3:-62011483 Msa1114990:five_prime_UTR
AGAGTGTGGTGTAGAGACTT+TGG 0.454772 7_3:-62011459 Msa1114990:five_prime_UTR
TCTAGCTCTATCATAGGAAC+TGG 0.455625 7_3:-62009699 Msa1114990:intron
CTTTAACATTAATCGAATCC+TGG 0.456787 7_3:+62009805 None:intergenic
CTACAAATTAATGTTCAATT+GGG 0.463780 7_3:+62007559 None:intergenic
TACTCCCGAAACGATGTCCT+TGG 0.473033 7_3:+62009340 None:intergenic
GAGTGTGGTGTAGAGACTTT+GGG 0.478620 7_3:-62011458 Msa1114990:five_prime_UTR
TCAGGCATTCAAGAAGGCTT+GGG 0.482423 7_3:-62010606 Msa1114990:intron
TTGTTGCATAAAGCCTTAGC+AGG 0.490400 7_3:+62007737 None:intergenic
AACTACCTGATGCCATGGCC+TGG 0.490944 7_3:+62009470 None:intergenic
TGATCTTCACTGTAATCTGA+TGG 0.496203 7_3:+62010319 None:intergenic
ATGAAACATGTCACAAGTAA+TGG 0.505301 7_3:+62007491 None:intergenic
TGTATCGAGGTATGGAACTA+AGG 0.506317 7_3:+62011309 None:intergenic
ATACTCTTAATATGTGAAGA+AGG 0.514121 7_3:-62007764 Msa1114990:CDS
GTTTCGGGAGTATTAGTGAA+TGG 0.514173 7_3:-62009329 Msa1114990:CDS
GGTGGCAAAACTCATGCAAA+AGG 0.522181 7_3:-62010216 Msa1114990:CDS
TAATATTCAGGCATTCAAGA+AGG 0.522536 7_3:-62010612 Msa1114990:intron
AGTAGATAATTATAATCTTG+AGG 0.527229 7_3:+62010545 None:intergenic
GGTGGAACCATCGATGGAAA+AGG 0.528567 7_3:-62010247 Msa1114990:CDS
CAACTATTAGTTAATGGTGG+TGG 0.535177 7_3:-62010265 Msa1114990:CDS
CACATATGGATATATAGGTA+TGG 0.535510 7_3:+62011400 None:intergenic
GGGAAGTAGTATGTGATTCA+GGG 0.539599 7_3:-62010586 Msa1114990:CDS
CATACCTATATATCCATATG+TGG 0.542358 7_3:-62011399 Msa1114990:five_prime_UTR
CAGTGAGAAATTTCCATGCA+AGG 0.551676 7_3:-62007804 Msa1114990:CDS
TGATGACGATAGTGAATGAG+AGG 0.555898 7_3:+62011159 None:intergenic
GATTATGGAGCTAAAGGGGA+TGG 0.559266 7_3:-62010948 Msa1114990:CDS
ATATATAGATGCACTTTGAA+AGG 0.559322 7_3:+62011239 None:intergenic
CAACGTATGTAGTAATAAGC+GGG 0.563528 7_3:+62011099 None:intergenic
TCGAGGTATGGAACTAAGGA+GGG 0.569798 7_3:+62011313 None:intergenic
AGTTAGAATTAAGACTTGGC+CGG 0.569890 7_3:-62009279 Msa1114990:intron
ATTTCTGTGAGTTGCAGCGT+GGG 0.569894 7_3:+62007684 None:intergenic
ACTGATATGTTAGATTTGCA+AGG 0.570724 7_3:+62010500 None:intergenic
AAAAGCTATGTATCGAGGTA+TGG 0.571387 7_3:+62011301 None:intergenic
TCGATGGAAAAGGAAACATA+TGG 0.573459 7_3:-62010237 Msa1114990:CDS
TCTAACATTTGATAGTTGCA+AGG 0.576561 7_3:-62009883 Msa1114990:CDS
GATTCACCTTCCTATGATGA+TGG 0.579625 7_3:-62011074 Msa1114990:CDS
ATCTCAGTATTGGAAGCTTG+GGG 0.581140 7_3:-62009373 Msa1114990:intron
GCCTTGCAAGGATGCTCCAA+CGG 0.581239 7_3:-62010050 Msa1114990:intron
CAAAGATTATGGAGCTAAAG+GGG 0.581495 7_3:-62010952 Msa1114990:CDS
AATGGTGGTGGAACCATCGA+TGG 0.585351 7_3:-62010253 Msa1114990:CDS
AATGTTCAATTGTCTTACAC+AGG 0.586671 7_3:-62007716 Msa1114990:CDS
ACCGTTGGAGCATCCTTGCA+AGG 0.589497 7_3:+62010049 None:intergenic
ATTACTTGTGGACCAGGCCA+TGG 0.589996 7_3:-62009482 Msa1114990:CDS
TGAAGAAGGAGAACCTGCTA+AGG 0.593731 7_3:-62007750 Msa1114990:CDS
TTGCAATAGCAACTTGCAAG+AGG 0.593871 7_3:-62011123 Msa1114990:CDS
AGAGGAGGAATTGTCTTAGG+AGG 0.600709 7_3:+62011177 None:intergenic
ACAGACATTACTTGTGGACC+AGG 0.604491 7_3:-62009488 Msa1114990:CDS
CAGCAACTATTAGTTAATGG+TGG 0.608202 7_3:-62010268 Msa1114990:CDS
AAGTTAACTACCTGATGCCA+TGG 0.609029 7_3:+62009465 None:intergenic
GAGGTATGGAACTAAGGAGG+GGG 0.611371 7_3:+62011315 None:intergenic
ATGGAGTTAGAATTAAGACT+TGG 0.618304 7_3:-62009283 Msa1114990:CDS
ATTGGTGATATGAATTCCAT+CGG 0.620342 7_3:+62009740 None:intergenic
GGGAATAGTCCTAACACCGA+TGG 0.628872 7_3:-62009756 Msa1114990:CDS
GAAGCCACAGACATTACTTG+TGG 0.628882 7_3:-62009494 Msa1114990:CDS
TGGTCCACAAGTAATGTCTG+TGG 0.628925 7_3:+62009490 None:intergenic
ATCGAGGTATGGAACTAAGG+AGG 0.629235 7_3:+62011312 None:intergenic
TGACGATAGTGAATGAGAGG+AGG 0.634888 7_3:+62011162 None:intergenic
ACAGTGAAGATCAAAGACAT+TGG 0.636413 7_3:-62010309 Msa1114990:CDS
TCAACGTATGTAGTAATAAG+CGG 0.641060 7_3:+62011098 None:intergenic
TCGGTGTTAGGACTATTCCC+TGG 0.642387 7_3:+62009759 None:intergenic
AGATTGTGTATTTATAGACA+AGG 0.643980 7_3:+62011339 None:intergenic
GTATCACCATCATCATAGGA+AGG 0.644782 7_3:+62011068 None:intergenic
CGAGGTATGGAACTAAGGAG+GGG 0.647138 7_3:+62011314 None:intergenic
TATTTCTGTGAGTTGCAGCG+TGG 0.653112 7_3:+62007683 None:intergenic
TCTCAGTATTGGAAGCTTGG+GGG 0.679058 7_3:-62009372 Msa1114990:intron
GTCTCAATGTGTCATCACCA+GGG 0.683510 7_3:-62009776 Msa1114990:CDS
TGGTCATACTGATGACACAC+AGG 0.686944 7_3:-62010928 Msa1114990:intron
ATGGAAAAGGAAACATATGG+TGG 0.687596 7_3:-62010234 Msa1114990:CDS
TAGATGCACTTTGAAAGGTG+AGG 0.687852 7_3:+62011244 None:intergenic
TTAGCAAAAGCTATGTATCG+AGG 0.688155 7_3:+62011296 None:intergenic
GAGAACGTGGAGTGACACCA+TGG 0.693455 7_3:+62010991 None:intergenic
AGGTATGGAACTAAGGAGGG+GGG 0.695636 7_3:+62011316 None:intergenic
GTTGTTTATGCAGGACTCTG+CGG 0.702531 7_3:-62007900 Msa1114990:intron
ATGGAGCAACAGGCAGAGTG+TGG 0.727692 7_3:-62011473 Msa1114990:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAACAAAAAATATCT+TGG + chr7_3:62008100-62008119 None:intergenic 10.0%
!! TTATAATTTACTTAAAAATG+TGG + chr7_3:62008541-62008560 None:intergenic 10.0%
!! AGAAATATTTATTTATTTAG+TGG + chr7_3:62010249-62010268 None:intergenic 10.0%
!!! TCTTATTTGATTAAATATAA+AGG + chr7_3:62010480-62010499 None:intergenic 10.0%
!! TAATTCTGATTAATTATTAT+GGG + chr7_3:62010603-62010622 None:intergenic 10.0%
!! AAAATACAAAAGAACTATAA+TGG - chr7_3:62007747-62007766 Msa1114990:CDS 15.0%
!!! TTTGTTTTCAATTATAACAA+TGG - chr7_3:62008126-62008145 Msa1114990:intron 15.0%
!!! TTGTTTTCAATTATAACAAT+GGG - chr7_3:62008127-62008146 Msa1114990:intron 15.0%
!! CATACAAAATATTAAATTAG+TGG + chr7_3:62008217-62008236 None:intergenic 15.0%
!!! AACTTAAATTTTCCTATAAT+TGG - chr7_3:62008299-62008318 Msa1114990:intron 15.0%
!! ATAATTAGTTAATTAATCAC+TGG + chr7_3:62008500-62008519 None:intergenic 15.0%
!!! ATTGACTTGATTAAAATATT+GGG + chr7_3:62008790-62008809 None:intergenic 15.0%
!!! AATTGACTTGATTAAAATAT+TGG + chr7_3:62008791-62008810 None:intergenic 15.0%
!!! CTAACTAATTTTATTTTTGT+AGG - chr7_3:62009041-62009060 Msa1114990:intron 15.0%
!! TGAAAAAAAATTACAAGATT+AGG - chr7_3:62009301-62009320 Msa1114990:CDS 15.0%
!!! ATAAATGATATTTTAATCAG+TGG - chr7_3:62010207-62010226 Msa1114990:CDS 15.0%
!!! TAAATGATATTTTAATCAGT+GGG - chr7_3:62010208-62010227 Msa1114990:CDS 15.0%
!!! AATAAGACATAAATTTTCTT+TGG - chr7_3:62010493-62010512 Msa1114990:intron 15.0%
!! AATTCTGATTAATTATTATG+GGG + chr7_3:62010602-62010621 None:intergenic 15.0%
!! GTAATTCTGATTAATTATTA+TGG + chr7_3:62010604-62010623 None:intergenic 15.0%
!!! TAATTTACCATTTTTTTACA+TGG + chr7_3:62010645-62010664 None:intergenic 15.0%
!! TTCATATTAATATCCACATA+TGG + chr7_3:62007565-62007584 None:intergenic 20.0%
!! TACATTATTATTCAAGAACT+TGG - chr7_3:62007900-62007919 Msa1114990:intron 20.0%
!! ATTGTTAATGTCAAAGATTA+TGG - chr7_3:62007985-62008004 Msa1114990:intron 20.0%
!! TAAGAAAACCAAATTAGTAT+AGG + chr7_3:62008240-62008259 None:intergenic 20.0%
!! AGTAGATAATTATAATCTTG+AGG + chr7_3:62008406-62008425 None:intergenic 20.0%
!! AAATTTAATTGTCAGATATC+TGG - chr7_3:62008584-62008603 Msa1114990:intron 20.0%
!! GTTAAAACAATGTTCAATTT+AGG + chr7_3:62008942-62008961 None:intergenic 20.0%
!!! TCATAATCAAGGATTTTAAT+TGG - chr7_3:62009001-62009020 Msa1114990:intron 20.0%
!!! ATTTTTCTGTAATTTGTTTC+AGG - chr7_3:62009391-62009410 Msa1114990:intron 20.0%
!! TGATTTATATATCTCAGTAT+TGG - chr7_3:62009565-62009584 Msa1114990:intron 20.0%
!!! TCCTTAAAGTTTAAAATTAC+CGG + chr7_3:62009691-62009710 None:intergenic 20.0%
!!! TTTTAAAATAAGTGCATGTT+TGG - chr7_3:62009799-62009818 Msa1114990:CDS 20.0%
!!! ATGTAGTTTTAACAAAATCA+CGG - chr7_3:62010030-62010049 Msa1114990:intron 20.0%
!! TTGAATTCTTTATTGATCAT+AGG - chr7_3:62010441-62010460 Msa1114990:intron 20.0%
!! AAAAAAGCCATGTAAAAAAA+TGG - chr7_3:62010635-62010654 Msa1114990:intron 20.0%
!! CAAAAATAAAATCAAATGAG+TGG + chr7_3:62010713-62010732 None:intergenic 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr7_3:62010798-62010817 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr7_3:62010799-62010818 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + chr7_3:62010800-62010819 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG - chr7_3:62010841-62010860 Msa1114990:intron 20.0%
!! TCACAGAAATATACAAATTA+AGG - chr7_3:62011277-62011296 Msa1114990:CDS 20.0%
!!! AAACTAATTGCATTTTTGTA+TGG + chr7_3:62011331-62011350 None:intergenic 20.0%
!! CTACAAATTAATGTTCAATT+GGG + chr7_3:62011392-62011411 None:intergenic 20.0%
!! ACTACAAATTAATGTTCAAT+TGG + chr7_3:62011393-62011412 None:intergenic 20.0%
! ATATCCACATATGGATATAT+AGG + chr7_3:62007556-62007575 None:intergenic 25.0%
! AGATTGTGTATTTATAGACA+AGG + chr7_3:62007612-62007631 None:intergenic 25.0%
! ATATATAGATGCACTTTGAA+AGG + chr7_3:62007712-62007731 None:intergenic 25.0%
!!! TTAACAATTTTAAGAGAACG+TGG + chr7_3:62007973-62007992 None:intergenic 25.0%
! TTTGTATGCCTATACTAATT+TGG - chr7_3:62008229-62008248 Msa1114990:intron 25.0%
! AAAAATGTGGAGCTTAAAAA+CGG + chr7_3:62008528-62008547 None:intergenic 25.0%
!! GAGAAAAAGCATAAAAAAGT+TGG + chr7_3:62008868-62008887 None:intergenic 25.0%
! ACAATTATGATTTGACTGTT+CGG - chr7_3:62008960-62008979 Msa1114990:intron 25.0%
! TTGATTATGAAATCTGTAAC+AGG + chr7_3:62008991-62009010 None:intergenic 25.0%
! TGTTACAGATTTCATAATCA+AGG - chr7_3:62008990-62009009 Msa1114990:intron 25.0%
! GATTGTATATCAATTGTAGA+TGG - chr7_3:62009418-62009437 Msa1114990:intron 25.0%
! GATAGATTAGTATATCAAAG+TGG + chr7_3:62009720-62009739 None:intergenic 25.0%
! TTGTCAATCATCATATTTAG+TGG + chr7_3:62009745-62009764 None:intergenic 25.0%
!! TTTACGTTAAACAAAAGCAT+TGG + chr7_3:62009883-62009902 None:intergenic 25.0%
!! AAATTGAAGCTTCATGTTTT+CGG - chr7_3:62009916-62009935 Msa1114990:intron 25.0%
! TATTTACTTTGCTTCACTTA+CGG + chr7_3:62010297-62010316 None:intergenic 25.0%
! ATCAAACACAATAATAGTGT+TGG - chr7_3:62010346-62010365 Msa1114990:CDS 25.0%
! AATATAAAGGTGAGTAAGTT+AGG + chr7_3:62010467-62010486 None:intergenic 25.0%
!!! ATAAATTTTCTTTGGTCTTG+CGG - chr7_3:62010501-62010520 Msa1114990:CDS 25.0%
! CAAATTTCAGAACATTGAAA+TGG - chr7_3:62010563-62010582 Msa1114990:CDS 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr7_3:62010751-62010770 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr7_3:62010752-62010771 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr7_3:62010788-62010807 None:intergenic 25.0%
! AGAAATGTGAAAAATGCAAA+AGG - chr7_3:62010924-62010943 Msa1114990:intron 25.0%
! GAAATGTGAAAAATGCAAAA+GGG - chr7_3:62010925-62010944 Msa1114990:intron 25.0%
! AAATGTGAAAAATGCAAAAG+GGG - chr7_3:62010926-62010945 Msa1114990:intron 25.0%
! ATACTCTTAATATGTGAAGA+AGG - chr7_3:62011184-62011203 Msa1114990:CDS 25.0%
! ACATGTTTCATATTGTTGTA+AGG - chr7_3:62011469-62011488 Msa1114990:five_prime_UTR 25.0%
ATAGGTATGGAAGTTTAGTT+AGG + chr7_3:62007538-62007557 None:intergenic 30.0%
CACATATGGATATATAGGTA+TGG + chr7_3:62007551-62007570 None:intergenic 30.0%
CATACCTATATATCCATATG+TGG - chr7_3:62007549-62007568 Msa1114990:three_prime_UTR 30.0%
TCAACGTATGTAGTAATAAG+CGG + chr7_3:62007853-62007872 None:intergenic 30.0%
TAATGTATCACCATCATCAT+AGG + chr7_3:62007887-62007906 None:intergenic 30.0%
TCAAAGATTATGGAGCTAAA+GGG - chr7_3:62007995-62008014 Msa1114990:intron 30.0%
TGAATATTAAATGTCCCACA+TGG + chr7_3:62008325-62008344 None:intergenic 30.0%
ATGTGGGACATTTAATATTC+AGG - chr7_3:62008324-62008343 Msa1114990:intron 30.0%
TAATATTCAGGCATTCAAGA+AGG - chr7_3:62008336-62008355 Msa1114990:intron 30.0%
ACTGATATGTTAGATTTGCA+AGG + chr7_3:62008451-62008470 None:intergenic 30.0%
CAAATCTAACATATCAGTTC+AGG - chr7_3:62008453-62008472 Msa1114990:intron 30.0%
GTTCAGCAACTATTAGTTAA+TGG - chr7_3:62008677-62008696 Msa1114990:intron 30.0%
! TCTAACATTTGATAGTTGCA+AGG - chr7_3:62009065-62009084 Msa1114990:intron 30.0%
CTTTAACATTAATCGAATCC+TGG + chr7_3:62009146-62009165 None:intergenic 30.0%
! ATTGGTGATATGAATTCCAT+CGG + chr7_3:62009211-62009230 None:intergenic 30.0%
!! GATTTTGATGTTTTGGGTAT+TGG + chr7_3:62009229-62009248 None:intergenic 30.0%
!! GCTAGAGATTTTGATGTTTT+GGG + chr7_3:62009235-62009254 None:intergenic 30.0%
!! AGCTAGAGATTTTGATGTTT+TGG + chr7_3:62009236-62009255 None:intergenic 30.0%
!! AAAATCTCTAGCTCTATCAT+AGG - chr7_3:62009243-62009262 Msa1114990:intron 30.0%
!! AAGATTTCTGGAACTACAAA+TGG - chr7_3:62009646-62009665 Msa1114990:intron 30.0%
ATGGAGTTAGAATTAAGACT+TGG - chr7_3:62009665-62009684 Msa1114990:intron 30.0%
! GCCGGTAATTTTAAACTTTA+AGG - chr7_3:62009687-62009706 Msa1114990:intron 30.0%
AGATTAGTATATCAAAGTGG+TGG + chr7_3:62009717-62009736 None:intergenic 30.0%
TAAGTGCATGTTTGGTATAA+TGG - chr7_3:62009807-62009826 Msa1114990:CDS 30.0%
GAAAACATGAAGCTTCAATT+TGG + chr7_3:62009917-62009936 None:intergenic 30.0%
!!! TAGTTTTAACAAAATCACGG+TGG - chr7_3:62010033-62010052 Msa1114990:intron 30.0%
TTGGAAACTCAATGATTGTT+TGG + chr7_3:62010072-62010091 None:intergenic 30.0%
CTGATTAATTATTATGGGGT+TGG + chr7_3:62010598-62010617 None:intergenic 30.0%
CAAATGAGTGGTTACATTAA+GGG + chr7_3:62010701-62010720 None:intergenic 30.0%
TCAAATGAGTGGTTACATTA+AGG + chr7_3:62010702-62010721 None:intergenic 30.0%
CATCTAGTAATTTGAAAAGG+GGG + chr7_3:62010749-62010768 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr7_3:62010750-62010769 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - chr7_3:62010850-62010869 Msa1114990:intron 30.0%
!!! TGATTTTGTGTTGTTTATGC+AGG - chr7_3:62011039-62011058 Msa1114990:CDS 30.0%
AATGTTCAATTGTCTTACAC+AGG - chr7_3:62011232-62011251 Msa1114990:CDS 30.0%
ATGAAACATGTCACAAGTAA+TGG + chr7_3:62011460-62011479 None:intergenic 30.0%
AAAAGCTATGTATCGAGGTA+TGG + chr7_3:62007650-62007669 None:intergenic 35.0%
TTAGCAAAAGCTATGTATCG+AGG + chr7_3:62007655-62007674 None:intergenic 35.0%
CAACGTATGTAGTAATAAGC+GGG + chr7_3:62007852-62007871 None:intergenic 35.0%
GTCAAAGATTATGGAGCTAA+AGG - chr7_3:62007994-62008013 Msa1114990:intron 35.0%
CAAAGATTATGGAGCTAAAG+GGG - chr7_3:62007996-62008015 Msa1114990:intron 35.0%
! TTTTCCTATAATTGGCCATG+TGG - chr7_3:62008307-62008326 Msa1114990:intron 35.0%
TTTCCTATAATTGGCCATGT+GGG - chr7_3:62008308-62008327 Msa1114990:intron 35.0%
TGATCTTCACTGTAATCTGA+TGG + chr7_3:62008632-62008651 None:intergenic 35.0%
ACAGTGAAGATCAAAGACAT+TGG - chr7_3:62008639-62008658 Msa1114990:intron 35.0%
CAGCAACTATTAGTTAATGG+TGG - chr7_3:62008680-62008699 Msa1114990:intron 35.0%
CAACTATTAGTTAATGGTGG+TGG - chr7_3:62008683-62008702 Msa1114990:intron 35.0%
! TATGTTTCCTTTTCCATCGA+TGG + chr7_3:62008711-62008730 None:intergenic 35.0%
TCGATGGAAAAGGAAACATA+TGG - chr7_3:62008711-62008730 Msa1114990:intron 35.0%
ATGGAAAAGGAAACATATGG+TGG - chr7_3:62008714-62008733 Msa1114990:intron 35.0%
GAACTATGTATACATACCGT+TGG + chr7_3:62008917-62008936 None:intergenic 35.0%
ACAAATTCACGTTTCATTCC+AGG - chr7_3:62009125-62009144 Msa1114990:intron 35.0%
! ATATGAATTCCATCGGTGTT+AGG + chr7_3:62009204-62009223 None:intergenic 35.0%
! ATATCTCAGTATTGGAAGCT+TGG - chr7_3:62009573-62009592 Msa1114990:intron 35.0%
! TATCTCAGTATTGGAAGCTT+GGG - chr7_3:62009574-62009593 Msa1114990:intron 35.0%
AAAATCCAAGGACATCGTTT+CGG - chr7_3:62009603-62009622 Msa1114990:intron 35.0%
AGTTAGAATTAAGACTTGGC+CGG - chr7_3:62009669-62009688 Msa1114990:intron 35.0%
! ATTTATTTAGTGGATCACGC+TGG + chr7_3:62010239-62010258 None:intergenic 35.0%
! AATAGTGTTGGACCAATAGA+TGG - chr7_3:62010358-62010377 Msa1114990:intron 35.0%
TGTATGTTTCCTCCATCTAT+TGG + chr7_3:62010373-62010392 None:intergenic 35.0%
TGAAAAGGGGGTTACATTTA+GGG + chr7_3:62010737-62010756 None:intergenic 35.0%
TTGAAAAGGGGGTTACATTT+AGG + chr7_3:62010738-62010757 None:intergenic 35.0%
ATGCAAAAGGGGTTACATTA+AGG - chr7_3:62010937-62010956 Msa1114990:CDS 35.0%
TGCAAAAGGGGTTACATTAA+GGG - chr7_3:62010938-62010957 Msa1114990:CDS 35.0%
ACACTACAAGTACACTATAC+TGG - chr7_3:62010972-62010991 Msa1114990:CDS 35.0%
GGTACAACACATTGCTAATT+TGG + chr7_3:62011075-62011094 None:intergenic 35.0%
GTGTTGTACCAGAATATAAC+AGG - chr7_3:62011085-62011104 Msa1114990:CDS 35.0%
! CACTTTTGCCTGTTATATTC+TGG + chr7_3:62011096-62011115 None:intergenic 35.0%
! TGCATTTTTATCTCCTTGCA+TGG + chr7_3:62011160-62011179 None:intergenic 35.0%
TGTATCGAGGTATGGAACTA+AGG + chr7_3:62007642-62007661 None:intergenic 40.0%
! TAGATGCACTTTGAAAGGTG+AGG + chr7_3:62007707-62007726 None:intergenic 40.0%
ATGAGAGGAGGAATTGTCTT+AGG + chr7_3:62007777-62007796 None:intergenic 40.0%
! TGATGACGATAGTGAATGAG+AGG + chr7_3:62007792-62007811 None:intergenic 40.0%
TTGCAATAGCAACTTGCAAG+AGG - chr7_3:62007825-62007844 Msa1114990:CDS 40.0%
GATTCACCTTCCTATGATGA+TGG - chr7_3:62007874-62007893 Msa1114990:CDS 40.0%
GTATCACCATCATCATAGGA+AGG + chr7_3:62007883-62007902 None:intergenic 40.0%
! GATTTTTCGTGCTTAGACCA+TGG - chr7_3:62007940-62007959 Msa1114990:intron 40.0%
TGGGAAGTAGTATGTGATTC+AGG - chr7_3:62008361-62008380 Msa1114990:intron 40.0%
GGGAAGTAGTATGTGATTCA+GGG - chr7_3:62008362-62008381 Msa1114990:intron 40.0%
CTCAAACCAATCAGATTCTC+TGG - chr7_3:62008424-62008443 Msa1114990:intron 40.0%
!! TCTAGCTCTATCATAGGAAC+TGG - chr7_3:62009249-62009268 Msa1114990:intron 40.0%
AAGTTAACTACCTGATGCCA+TGG + chr7_3:62009486-62009505 None:intergenic 40.0%
! ATCTCAGTATTGGAAGCTTG+GGG - chr7_3:62009575-62009594 Msa1114990:intron 40.0%
AAATCCAAGGACATCGTTTC+GGG - chr7_3:62009604-62009623 Msa1114990:intron 40.0%
!! GTTTCGGGAGTATTAGTGAA+TGG - chr7_3:62009619-62009638 Msa1114990:intron 40.0%
GTGAATGGAGCTAAGATTTC+TGG - chr7_3:62009634-62009653 Msa1114990:intron 40.0%
TTTCGGACGTTTGATGCATT+TGG - chr7_3:62009933-62009952 Msa1114990:intron 40.0%
CAACAAACTCAGTGACGATT+TGG + chr7_3:62009967-62009986 None:intergenic 40.0%
!! TGACATCTTGGTGGATTTGT+TGG + chr7_3:62010091-62010110 None:intergenic 40.0%
CTAGTGCATGTTTGACATCT+TGG + chr7_3:62010103-62010122 None:intergenic 40.0%
!!! AATTTTCTTTGGTCTTGCGG+TGG - chr7_3:62010504-62010523 Msa1114990:CDS 40.0%
TGAGTGGTTACATTAAGGGA+CGG + chr7_3:62010697-62010716 None:intergenic 40.0%
AAAGGGGTTACATTAAGGGA+CGG - chr7_3:62010942-62010961 Msa1114990:CDS 40.0%
CAGTGAGAAATTTCCATGCA+AGG - chr7_3:62011144-62011163 Msa1114990:CDS 40.0%
TTGTTGCATAAAGCCTTAGC+AGG + chr7_3:62011214-62011233 None:intergenic 40.0%
CAAACGTTGTATGGAGCAAC+AGG - chr7_3:62007465-62007484 Msa1114990:three_prime_UTR 45.0%
AGAGTGTGGTGTAGAGACTT+TGG - chr7_3:62007489-62007508 Msa1114990:three_prime_UTR 45.0%
GAGTGTGGTGTAGAGACTTT+GGG - chr7_3:62007490-62007509 Msa1114990:three_prime_UTR 45.0%
TCGAGGTATGGAACTAAGGA+GGG + chr7_3:62007638-62007657 None:intergenic 45.0%
ATCGAGGTATGGAACTAAGG+AGG + chr7_3:62007639-62007658 None:intergenic 45.0%
AGAGGAGGAATTGTCTTAGG+AGG + chr7_3:62007774-62007793 None:intergenic 45.0%
TGACGATAGTGAATGAGAGG+AGG + chr7_3:62007789-62007808 None:intergenic 45.0%
GATTATGGAGCTAAAGGGGA+TGG - chr7_3:62008000-62008019 Msa1114990:intron 45.0%
TGGTCATACTGATGACACAC+AGG - chr7_3:62008020-62008039 Msa1114990:intron 45.0%
TGTCCCACATGGCCAATTAT+AGG + chr7_3:62008314-62008333 None:intergenic 45.0%
TTCAGGCATTCAAGAAGGCT+TGG - chr7_3:62008341-62008360 Msa1114990:intron 45.0%
TCAGGCATTCAAGAAGGCTT+GGG - chr7_3:62008342-62008361 Msa1114990:intron 45.0%
!! TTCAGGGCAAGCAGTTTTAG+TGG - chr7_3:62008378-62008397 Msa1114990:intron 45.0%
CAAGGACCAGAGAATCTGAT+TGG + chr7_3:62008433-62008452 None:intergenic 45.0%
GGTGGCAAAACTCATGCAAA+AGG - chr7_3:62008732-62008751 Msa1114990:intron 45.0%
! TCTCTTTTTGCAGCCTTGCA+AGG - chr7_3:62008886-62008905 Msa1114990:intron 45.0%
GTCTCAATGTGTCATCACCA+GGG - chr7_3:62009172-62009191 Msa1114990:intron 45.0%
GAAGCCACAGACATTACTTG+TGG - chr7_3:62009454-62009473 Msa1114990:intron 45.0%
TGGTCCACAAGTAATGTCTG+TGG + chr7_3:62009461-62009480 None:intergenic 45.0%
ACAGACATTACTTGTGGACC+AGG - chr7_3:62009460-62009479 Msa1114990:intron 45.0%
! TCTCAGTATTGGAAGCTTGG+GGG - chr7_3:62009576-62009595 Msa1114990:intron 45.0%
! TCAGTGACGATTTGGATCTG+CGG + chr7_3:62009959-62009978 None:intergenic 45.0%
GTGCATGTTTGACATCTTGG+TGG + chr7_3:62010100-62010119 None:intergenic 45.0%
! TATTTAGTGGATCACGCTGG+AGG + chr7_3:62010236-62010255 None:intergenic 45.0%
CGGTCAATTCATGAGAGCAA+TGG + chr7_3:62010277-62010296 None:intergenic 45.0%
! AGTGTTGGACCAATAGATGG+AGG - chr7_3:62010361-62010380 Msa1114990:intron 45.0%
TCTTGCGGTGGTTAAATGCA+GGG - chr7_3:62010516-62010535 Msa1114990:CDS 45.0%
TGGTTACATTAAGGGACGGA+GGG + chr7_3:62010693-62010712 None:intergenic 45.0%
GTTGTTTATGCAGGACTCTG+CGG - chr7_3:62011048-62011067 Msa1114990:CDS 45.0%
TGAAGAAGGAGAACCTGCTA+AGG - chr7_3:62011198-62011217 Msa1114990:CDS 45.0%
ATTTCTGTGAGTTGCAGCGT+GGG + chr7_3:62011267-62011286 None:intergenic 45.0%
! TATTTCTGTGAGTTGCAGCG+TGG + chr7_3:62011268-62011287 None:intergenic 45.0%
AGGTATGGAACTAAGGAGGG+GGG + chr7_3:62007635-62007654 None:intergenic 50.0%
GAGGTATGGAACTAAGGAGG+GGG + chr7_3:62007636-62007655 None:intergenic 50.0%
CGAGGTATGGAACTAAGGAG+GGG + chr7_3:62007637-62007656 None:intergenic 50.0%
!! AATGGTGGTGGAACCATCGA+TGG - chr7_3:62008695-62008714 Msa1114990:intron 50.0%
GGTGGAACCATCGATGGAAA+AGG - chr7_3:62008701-62008720 Msa1114990:intron 50.0%
CGTCTCAATGTGTCATCACC+AGG - chr7_3:62009171-62009190 Msa1114990:intron 50.0%
!! TCGGTGTTAGGACTATTCCC+TGG + chr7_3:62009192-62009211 None:intergenic 50.0%
GGGAATAGTCCTAACACCGA+TGG - chr7_3:62009192-62009211 Msa1114990:intron 50.0%
ATTACTTGTGGACCAGGCCA+TGG - chr7_3:62009466-62009485 Msa1114990:intron 50.0%
TACTCCCGAAACGATGTCCT+TGG + chr7_3:62009611-62009630 None:intergenic 50.0%
GTCTTGCGGTGGTTAAATGC+AGG - chr7_3:62010515-62010534 Msa1114990:CDS 50.0%
GGTTAAATGCAGGGAGGTTC+AGG - chr7_3:62010525-62010544 Msa1114990:CDS 50.0%
GTGGTTACATTAAGGGACGG+AGG + chr7_3:62010694-62010713 None:intergenic 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr7_3:62010946-62010965 Msa1114990:CDS 50.0%
ATGGAGCAACAGGCAGAGTG+TGG - chr7_3:62007475-62007494 Msa1114990:three_prime_UTR 55.0%
GAGAACGTGGAGTGACACCA+TGG + chr7_3:62007960-62007979 None:intergenic 55.0%
GCCTTGCAAGGATGCTCCAA+CGG - chr7_3:62008898-62008917 Msa1114990:intron 55.0%
! ACCGTTGGAGCATCCTTGCA+AGG + chr7_3:62008902-62008921 None:intergenic 55.0%
AACTACCTGATGCCATGGCC+TGG + chr7_3:62009481-62009500 None:intergenic 55.0%
! AGTATTGGAAGCTTGGGGGC+TGG - chr7_3:62009580-62009599 Msa1114990:intron 55.0%
CTTGGGGGCTGGAAAATCCA+AGG - chr7_3:62009591-62009610 Msa1114990:intron 55.0%
TGCGGTGGTTAAATGCAGGG+AGG - chr7_3:62010519-62010538 Msa1114990:CDS 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr7_3:62010945-62010964 Msa1114990:CDS 55.0%
GTGGACCAGGCCATGGCATC+AGG - chr7_3:62009473-62009492 Msa1114990:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 62007464 62011506 62007464 ID=Msa1114990;Name=Msa1114990
chr7_3 mRNA 62007464 62011506 62007464 ID=Msa1114990-mRNA-1;Parent=Msa1114990;Name=Msa1114990-mRNA-1;_AED=0.29;_eAED=0.29;_QI=116|0.87|0.88|1|1|1|9|209|489
chr7_3 exon 62007464 62007909 62007464 ID=Msa1114990-mRNA-1:exon:14334;Parent=Msa1114990-mRNA-1
chr7_3 exon 62008380 62008433 62008380 ID=Msa1114990-mRNA-1:exon:14333;Parent=Msa1114990-mRNA-1
chr7_3 exon 62009280 62009388 62009280 ID=Msa1114990-mRNA-1:exon:14332;Parent=Msa1114990-mRNA-1
chr7_3 exon 62009476 62009557 62009476 ID=Msa1114990-mRNA-1:exon:14331;Parent=Msa1114990-mRNA-1
chr7_3 exon 62009700 62009907 62009700 ID=Msa1114990-mRNA-1:exon:14330;Parent=Msa1114990-mRNA-1
chr7_3 exon 62010051 62010071 62010051 ID=Msa1114990-mRNA-1:exon:14329;Parent=Msa1114990-mRNA-1
chr7_3 exon 62010204 62010371 62010204 ID=Msa1114990-mRNA-1:exon:14328;Parent=Msa1114990-mRNA-1
chr7_3 exon 62010496 62010624 62010496 ID=Msa1114990-mRNA-1:exon:14327;Parent=Msa1114990-mRNA-1
chr7_3 exon 62010929 62011506 62010929 ID=Msa1114990-mRNA-1:exon:14326;Parent=Msa1114990-mRNA-1
chr7_3 five_prime_UTR 62011391 62011506 62011391 ID=Msa1114990-mRNA-1:five_prime_utr;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62010929 62011390 62010929 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62010496 62010624 62010496 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62010204 62010371 62010204 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62010051 62010071 62010051 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62009700 62009907 62009700 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62009476 62009557 62009476 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62009280 62009388 62009280 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62008380 62008433 62008380 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 CDS 62007673 62007909 62007673 ID=Msa1114990-mRNA-1:cds;Parent=Msa1114990-mRNA-1
chr7_3 three_prime_UTR 62007464 62007672 62007464 ID=Msa1114990-mRNA-1:three_prime_utr;Parent=Msa1114990-mRNA-1
Gene Sequence

>Msa1114990

ATGAAAAGCAAACATGATCTTATTAATTTCCTTGTCTATAAATACACAATCTCCCCCCTCCTTAGTTCCATACCTCGATACATAGCTTTTGCTAAATATATTCTCATCAAACAATTATATTATTCCTCACCTTTCAAAGTGCATCTATATATTTTTCTCAATATAGTAAAATACAAAAGAACTATAATGGTCCTCCTAAGACAATTCCTCCTCTCATTCACTATCGTCATCATTTCATTTGTTGCTTGCAATAGCAACTTGCAAGAGGACCCGCTTATTACTACATACGTTGATGATTCACCTTCCTATGATGATGGTGATACATTATTATTCAAGAACTTGGTTGAGCAAAACACAAATGATTTTTCGTGCTTAGACCATGGTGTCACTCCACGTTCTCTTAAAATTGTTAATGTCAAAGATTATGGAGCTAAAGGGGATGGTCATACTGATGACACACAGGCATTCAAGAAGGCTTGGGAAGTAGTATGTGATTCAGGGCAAGCAGTTTTAGTGGCACCTCAAGATTATAATTATCTACTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTAACATATCAGTTCAGATATCTGGAAGTCTTGAAGCATCAGATAATCCATCAGATTACAGTGAAGATCAAAGACATTGGCTTGTATTTGAGCAAGTTCAGCAACTATTAGTTAATGGTGGTGGAACCATCGATGGAAAAGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGAAACCTTGCAAGGATGCTCCAACGGCTCTAACATTTGATAGTTGCAAGGACTTAATAGTTGACGATTTGACAATACAAAATGCGCAACAAATTCACGTTTCATTCCAGGATTCGATTAATGTTAAAGCTTCTCGTCTCAATGTGTCATCACCAGGGAATAGTCCTAACACCGATGGAATTCATATCACCAATACCCAAAACATCAAAATCTCTAGCTCTATCATAGGAACTGGTGACGATTGTATATCAATTGTAGATGGATCTAGTAATGTAGAAGCCACAGACATTACTTGTGGACCAGGCCATGGCATCAGTATTGGAAGCTTGGGGGCTGGAAAATCCAAGGACATCGTTTCGGGAGTATTAGTGAATGGAGCTAAGATTTCTGGAACTACAAATGGAGTTAGAATTAAGACTTGGCCGGGAGGTTCAGGAAGTGCTAGCAACATCAAATTTCAGAACATTGAAATGGACAATGACTCTGCGGTCCAAATTAGCAATGTGTTGTACCAGAATATAACAGGCAAAAGTGCTTCTGATATAGCTGTAAAGTTTGATTGCAGTGAGAAATTTCCATGCAAGGAGATAAAAATGCAAAACATACTCTTAATATGTGAAGAAGGAGAACCTGCTAAGGCTTTATGCAACAATGTTCAATTGTCTTACACAGGAAATGTTAACCCACGCTGCAACTCACAGAAATATACAAATTAA
Protein sequence

>Msa1114990

MKSKHDLINFLVYKYTISPLLSSIPRYIAFAKYILIKQLYYSSPFKVHLYIFLNIVKYKRTIMVLLRQFLLSFTIVIISFVACNSNLQEDPLITTYVDDSPSYDDGDTLLFKNLVEQNTNDFSCLDHGVTPRSLKIVNVKDYGAKGDGHTDDTQAFKKAWEVVCDSGQAVLVAPQDYNYLLKPIRFSGPCKSNISVQISGSLEASDNPSDYSEDQRHWLVFEQVQQLLVNGGGTIDGKGNIWWQNSCKRNKKKPCKDAPTALTFDSCKDLIVDDLTIQNAQQIHVSFQDSINVKASRLNVSSPGNSPNTDGIHITNTQNIKISSSIIGTGDDCISIVDGSSNVEATDITCGPGHGISIGSLGAGKSKDIVSGVLVNGAKISGTTNGVRIKTWPGGSGSASNIKFQNIEMDNDSAVQISNVLYQNITGKSASDIAVKFDCSEKFPCKEIKMQNILLICEEGEPAKALCNNVQLSYTGNVNPRCNSQKYTN*