Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074510 | KEH32645.1 | 73.846 | 65 | 13 | 2 | 43 | 105 | 1 | 63 | 1.92e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074510 | A0A072V3A9 | 73.846 | 65 | 13 | 2 | 43 | 105 | 1 | 63 | 9.17e-21 | 88.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1074510 | Msa1111600 | 0.829359 | 5.380120e-55 | -8.615850e-47 |
| Msa1074510 | Msa1151940 | 0.945013 | 6.743038e-104 | -8.615850e-47 |
| Msa1074510 | Msa1182910 | 0.880089 | 7.312588e-70 | -8.615850e-47 |
| Msa1074510 | Msa1311210 | 0.875506 | 2.920674e-68 | -8.615850e-47 |
| Msa1074510 | Msa1357310 | 0.877261 | 7.240421e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074510 | MtrunA17_Chr4g0042641 | 82.143 | 28 | 5 | 0 | 78 | 105 | 17 | 44 | 3.11e-11 | 53.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCATGGATGGAGGTT+GGG | 0.325455 | 7_2:-72394403 | None:intergenic |
| GCTGATGAATTTCAAGAAAT+AGG | 0.329504 | 7_2:+72394937 | Msa1074510:five_prime_UTR |
| ACACAAGCAGTGCAAATAAC+AGG | 0.339261 | 7_2:-72398768 | None:intergenic |
| GAGATAGCAACACACACTTC+TGG | 0.342376 | 7_2:+72394755 | Msa1074510:five_prime_UTR |
| GTTCCTCCTGTGAAGATTGT+TGG | 0.385035 | 7_2:+72397960 | Msa1074510:CDS |
| GTAGAAGAAAGATGATTTCA+TGG | 0.387224 | 7_2:-72394415 | None:intergenic |
| GATTTCATGGATGGAGGTTG+GGG | 0.404674 | 7_2:-72394402 | None:intergenic |
| ATGATTTCATGGATGGAGGT+TGG | 0.434492 | 7_2:-72394404 | None:intergenic |
| CAAAATAATCTCTTCAATGT+TGG | 0.450531 | 7_2:+72398658 | Msa1074510:CDS |
| AGATAGCAACACACACTTCT+GGG | 0.466301 | 7_2:+72394756 | Msa1074510:five_prime_UTR |
| ATTTGCACTGCTTGTGTGGT+TGG | 0.468289 | 7_2:+72398774 | Msa1074510:CDS |
| AGGGACGATATGAGGATTAC+CGG | 0.476410 | 7_2:+72398731 | Msa1074510:CDS |
| GTGTGGTTGGAAAGCGGCAT+AGG | 0.501032 | 7_2:+72398787 | Msa1074510:CDS |
| TGTTATTTGCACTGCTTGTG+TGG | 0.507323 | 7_2:+72398770 | Msa1074510:CDS |
| AAGAAAGATGATTTCATGGA+TGG | 0.509507 | 7_2:-72394411 | None:intergenic |
| AACACACACTTCTGGGGAGG+AGG | 0.536072 | 7_2:+72394763 | Msa1074510:five_prime_UTR |
| TGTTGGTCAGCTTCAGCAGA+AGG | 0.540325 | 7_2:+72398675 | Msa1074510:CDS |
| AATTTCGACGTGGTGGTCAA+CGG | 0.543936 | 7_2:-72394569 | None:intergenic |
| CACAAGCAGTGCAAATAACA+GGG | 0.546740 | 7_2:-72398767 | None:intergenic |
| TATGTGTAAGGGACGATATG+AGG | 0.546749 | 7_2:+72398723 | Msa1074510:CDS |
| AAAGATGATTTCATGGATGG+AGG | 0.549732 | 7_2:-72394408 | None:intergenic |
| TGATAGAAAATGATGAAAGA+AGG | 0.549869 | 7_2:-72394437 | None:intergenic |
| ATGAGGATTACCGGTGCTCA+AGG | 0.550612 | 7_2:+72398740 | Msa1074510:CDS |
| AATCAAGCAACATGGTTGCA+AGG | 0.564145 | 7_2:+72395169 | Msa1074510:CDS |
| TGTGGTTGGAAAGCGGCATA+GGG | 0.564921 | 7_2:+72398788 | Msa1074510:CDS |
| GGTTTACGTGAGAGAGTGTG+AGG | 0.596141 | 7_2:-72394381 | None:intergenic |
| ACTGCTCCAACAATCTTCAC+AGG | 0.603142 | 7_2:-72397966 | None:intergenic |
| ACAGGGGAATCCTTGAGCAC+CGG | 0.609949 | 7_2:-72398750 | None:intergenic |
| TGAAGAGATGAAGATGATGA+TGG | 0.610421 | 7_2:-72394488 | None:intergenic |
| ATTCTCTCTCCACCGCGCTG+AGG | 0.620415 | 7_2:+72394589 | Msa1074510:five_prime_UTR |
| GTTGGTCAGCTTCAGCAGAA+GGG | 0.620779 | 7_2:+72398676 | Msa1074510:CDS |
| AGCAACACACACTTCTGGGG+AGG | 0.650153 | 7_2:+72394760 | Msa1074510:five_prime_UTR |
| CTGCTTGTGTGGTTGGAAAG+CGG | 0.652883 | 7_2:+72398781 | Msa1074510:CDS |
| GCTCCAACAATCTTCACAGG+AGG | 0.664971 | 7_2:-72397963 | None:intergenic |
| GATAGCAACACACACTTCTG+GGG | 0.670885 | 7_2:+72394757 | Msa1074510:five_prime_UTR |
| TTCGACGTGGTGGTCAACGG+TGG | 0.670969 | 7_2:-72394566 | None:intergenic |
| GAGAGAGAATTTCGACGTGG+TGG | 0.679739 | 7_2:-72394576 | None:intergenic |
| GTTATTTGCATAGAATCACA+AGG | 0.699403 | 7_2:+72397987 | Msa1074510:CDS |
| ATATGAGAAATCAAGCAACA+TGG | 0.704791 | 7_2:+72395161 | Msa1074510:exon |
| CTGATGATACCTCAGCGCGG+TGG | 0.713867 | 7_2:-72394598 | None:intergenic |
| ACAAGCAGTGCAAATAACAG+GGG | 0.745311 | 7_2:-72398766 | None:intergenic |
| GTGGAGAGAGAATTTCGACG+TGG | 0.789373 | 7_2:-72394579 | None:intergenic |
| GAACTGATGATACCTCAGCG+CGG | 0.855378 | 7_2:-72394601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTATAAACTTTTAT+CGG | - | chr7_2:72395894-72395913 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTTTAAGTTTATT+TGG | + | chr7_2:72395999-72396018 | Msa1074510:intron | 10.0% |
| !!! | TTTTTAGTTTAAGTTTATTT+GGG | + | chr7_2:72396000-72396019 | Msa1074510:intron | 10.0% |
| !!! | TTAACTATAAGTTTTAATTT+TGG | + | chr7_2:72396260-72396279 | Msa1074510:intron | 10.0% |
| !!! | TAACTATAAGTTTTAATTTT+GGG | + | chr7_2:72396261-72396280 | Msa1074510:intron | 10.0% |
| !!! | CAAATAATATAATAATTTTG+TGG | - | chr7_2:72397366-72397385 | None:intergenic | 10.0% |
| !! | CACAAAATTATTATATTATT+TGG | + | chr7_2:72397364-72397383 | Msa1074510:intron | 10.0% |
| !! | TAAAATCATGAATTATATAT+TGG | + | chr7_2:72397682-72397701 | Msa1074510:intron | 10.0% |
| !! | AAAATCATGAATTATATATT+GGG | + | chr7_2:72397683-72397702 | Msa1074510:intron | 10.0% |
| !!! | CAAATTAAAATGAGTATTTT+TGG | - | chr7_2:72394644-72394663 | None:intergenic | 15.0% |
| !!! | CAAAAATACTCATTTTAATT+TGG | + | chr7_2:72394642-72394661 | Msa1074510:intron | 15.0% |
| !!! | GTTTTTGTAGTTTTAAATTT+TGG | + | chr7_2:72394710-72394729 | Msa1074510:intron | 15.0% |
| !! | ACTCAAAATTCAAAATATAA+TGG | - | chr7_2:72394826-72394845 | None:intergenic | 15.0% |
| !!! | TTTTGAGTAAACATTTTTTT+TGG | + | chr7_2:72394838-72394857 | Msa1074510:intron | 15.0% |
| !!! | TTCTGTTTTGTAAATTATAA+TGG | + | chr7_2:72395025-72395044 | Msa1074510:intron | 15.0% |
| !! | TTGATCTTTATAATTGAAAT+TGG | + | chr7_2:72395837-72395856 | Msa1074510:intron | 15.0% |
| !!! | TAAAAGTTTATAACTTTTTC+TGG | + | chr7_2:72395895-72395914 | Msa1074510:intron | 15.0% |
| !! | AAAAAACAGAATATGAAATT+GGG | - | chr7_2:72395929-72395948 | None:intergenic | 15.0% |
| !! | AAAAAAACAGAATATGAAAT+TGG | - | chr7_2:72395930-72395949 | None:intergenic | 15.0% |
| !!! | TTTATTTGGGATTTTTTTAA+TGG | + | chr7_2:72396013-72396032 | Msa1074510:intron | 15.0% |
| !! | TACTAATCAAGTATAATATT+GGG | - | chr7_2:72396510-72396529 | None:intergenic | 15.0% |
| !! | ATACTAATCAAGTATAATAT+TGG | - | chr7_2:72396511-72396530 | None:intergenic | 15.0% |
| !!! | ACAAGATTATATTACTTTTT+GGG | - | chr7_2:72396627-72396646 | None:intergenic | 15.0% |
| !! | AGGAATATTTAAATGATATA+TGG | + | chr7_2:72396817-72396836 | Msa1074510:intron | 15.0% |
| !!! | TATACTTATATAGTGTTTTT+AGG | + | chr7_2:72397642-72397661 | Msa1074510:intron | 15.0% |
| !!! | CATTGATGATTATTTATTTT+AGG | + | chr7_2:72397769-72397788 | Msa1074510:intron | 15.0% |
| !!! | AAAACATAGTTTTAAATCAT+TGG | - | chr7_2:72398422-72398441 | None:intergenic | 15.0% |
| !! | TAAAACATTATTACTATTGT+AGG | - | chr7_2:72398625-72398644 | None:intergenic | 15.0% |
| !!! | TCATCATTTTCTATCAATTT+CGG | + | chr7_2:72394444-72394463 | Msa1074510:five_prime_UTR | 20.0% |
| !!! | TAATTTTCCAGAAAGATAAA+TGG | - | chr7_2:72394871-72394890 | None:intergenic | 20.0% |
| !!! | TTGTAAATTATAATGGATAG+TGG | + | chr7_2:72395032-72395051 | Msa1074510:intron | 20.0% |
| !!! | TTTTTCATATGTGAAAAGAT+TGG | + | chr7_2:72395268-72395287 | Msa1074510:intron | 20.0% |
| !!! | CAAGTTAACATTATAACTTT+TGG | + | chr7_2:72395451-72395470 | Msa1074510:intron | 20.0% |
| !!! | AAACTTTTATCGGTAATAAA+AGG | - | chr7_2:72395884-72395903 | None:intergenic | 20.0% |
| !!! | TTTGTTGAAGTACTTTTATT+GGG | + | chr7_2:72396206-72396225 | Msa1074510:intron | 20.0% |
| !! | ACTAATCAAGTATAATATTG+GGG | - | chr7_2:72396509-72396528 | None:intergenic | 20.0% |
| !!! | GACAAGATTATATTACTTTT+TGG | - | chr7_2:72396628-72396647 | None:intergenic | 20.0% |
| !! | ATATCATAAACACAACTATT+TGG | + | chr7_2:72396735-72396754 | Msa1074510:intron | 20.0% |
| !!! | TTTTATGCTATGACAAAAAT+AGG | + | chr7_2:72396797-72396816 | Msa1074510:intron | 20.0% |
| !!! | TGTTTTATACATTTACCAAT+TGG | - | chr7_2:72397341-72397360 | None:intergenic | 20.0% |
| !!! | ACTTATTTTACACATTTAAC+AGG | - | chr7_2:72397433-72397452 | None:intergenic | 20.0% |
| !! | TTATTTGATAAAGAGATATC+AGG | - | chr7_2:72397494-72397513 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTCATTAGAATTT+AGG | + | chr7_2:72397513-72397532 | Msa1074510:intron | 20.0% |
| !! | AAAAAAAACCTTATTAGCAA+AGG | - | chr7_2:72398164-72398183 | None:intergenic | 20.0% |
| !!! | AAGGTTTTTTTTATGTTTGT+AGG | + | chr7_2:72398172-72398191 | Msa1074510:intron | 20.0% |
| !!! | ATTTGATGATATAAAACTGT+AGG | + | chr7_2:72398213-72398232 | Msa1074510:intron | 20.0% |
| !! | ATCTTGCTTTAATAATGATT+TGG | + | chr7_2:72398526-72398545 | Msa1074510:intron | 20.0% |
| !! | ATTCAAAAAGATATGTGTAA+GGG | + | chr7_2:72398712-72398731 | Msa1074510:CDS | 20.0% |
| ! | TGATAGAAAATGATGAAAGA+AGG | - | chr7_2:72394440-72394459 | None:intergenic | 25.0% |
| ! | TATAAATCCGAAGATGAAAA+TGG | - | chr7_2:72394800-72394819 | None:intergenic | 25.0% |
| ! | TCAAATTCCATTTATCTTTC+TGG | + | chr7_2:72394861-72394880 | Msa1074510:intron | 25.0% |
| ! | GAAATAGGTATGACAATTAA+AGG | + | chr7_2:72394952-72394971 | Msa1074510:intron | 25.0% |
| !! | TATGTTAGCTTCAAATATGA+TGG | + | chr7_2:72395068-72395087 | Msa1074510:intron | 25.0% |
| !! | ATGTTAGCTTCAAATATGAT+GGG | + | chr7_2:72395069-72395088 | Msa1074510:intron | 25.0% |
| !!! | CATGTTATTTTCACATAGTT+TGG | + | chr7_2:72395382-72395401 | Msa1074510:intron | 25.0% |
| !!! | CTGTTTTTAAGAAATGCTTT+TGG | + | chr7_2:72395412-72395431 | Msa1074510:intron | 25.0% |
| ! | ATAGAAAAAGCAACAAGAAA+AGG | + | chr7_2:72395610-72395629 | Msa1074510:intron | 25.0% |
| ! | AAAAAAAACCGCATCATAAA+TGG | + | chr7_2:72395723-72395742 | Msa1074510:intron | 25.0% |
| !!! | CACTTTTTATGTTTATCACT+TGG | + | chr7_2:72396137-72396156 | Msa1074510:intron | 25.0% |
| ! | TATTCCAACAATAACACAAA+GGG | - | chr7_2:72396172-72396191 | None:intergenic | 25.0% |
| !!! | GTTTGTTGAAGTACTTTTAT+TGG | + | chr7_2:72396205-72396224 | Msa1074510:intron | 25.0% |
| ! | TTAATTTACCTTATTGTGCA+AGG | - | chr7_2:72396337-72396356 | None:intergenic | 25.0% |
| ! | ATGACACAATTAACATAACA+GGG | - | chr7_2:72396717-72396736 | None:intergenic | 25.0% |
| ! | TATGACACAATTAACATAAC+AGG | - | chr7_2:72396718-72396737 | None:intergenic | 25.0% |
| ! | AACAACTTTGAATCTTGAAA+AGG | - | chr7_2:72397264-72397283 | None:intergenic | 25.0% |
| ! | TTATACATTTACCAATTGGA+AGG | - | chr7_2:72397337-72397356 | None:intergenic | 25.0% |
| !! | AAACTAAAGTGACAATTTTG+TGG | - | chr7_2:72397459-72397478 | None:intergenic | 25.0% |
| ! | AGTATGAACATATATTCCAA+AGG | - | chr7_2:72397542-72397561 | None:intergenic | 25.0% |
| ! | TACTCTATATGTTCTTTGTA+TGG | + | chr7_2:72397558-72397577 | Msa1074510:intron | 25.0% |
| ! | TATATGTTCTTTGTATGGAT+TGG | + | chr7_2:72397563-72397582 | Msa1074510:intron | 25.0% |
| ! | AAATAATCATCAATGTCATG+TGG | - | chr7_2:72397764-72397783 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTAATTTCATGAC+AGG | + | chr7_2:72397894-72397913 | Msa1074510:intron | 25.0% |
| !! | TTTTGCTTTCTTGATAGATT+TGG | + | chr7_2:72397938-72397957 | Msa1074510:CDS | 25.0% |
| !!! | GCATTTTGGTTCTATTTTTA+TGG | + | chr7_2:72398034-72398053 | Msa1074510:intron | 25.0% |
| !! | TTTTATGTTTGTAGGATTGA+CGG | + | chr7_2:72398180-72398199 | Msa1074510:intron | 25.0% |
| !! | TTTTATAGTACTCTTGAATG+TGG | + | chr7_2:72398356-72398375 | Msa1074510:intron | 25.0% |
| !!! | ATTGAAGAGATTATTTTGCA+AGG | - | chr7_2:72398656-72398675 | None:intergenic | 25.0% |
| ! | CAAAATAATCTCTTCAATGT+TGG | + | chr7_2:72398658-72398677 | Msa1074510:CDS | 25.0% |
| ! | GATTCAAAAAGATATGTGTA+AGG | + | chr7_2:72398711-72398730 | Msa1074510:CDS | 25.0% |
| AAGAAAGATGATTTCATGGA+TGG | - | chr7_2:72394414-72394433 | None:intergenic | 30.0% | |
| GTAGAAGAAAGATGATTTCA+TGG | - | chr7_2:72394418-72394437 | None:intergenic | 30.0% | |
| !!! | GATGATGGCTTTATTTTAGT+GGG | - | chr7_2:72394476-72394495 | None:intergenic | 30.0% |
| !!! | TGATGATGGCTTTATTTTAG+TGG | - | chr7_2:72394477-72394496 | None:intergenic | 30.0% |
| ! | GATTCATCCATTTTCATCTT+CGG | + | chr7_2:72394790-72394809 | Msa1074510:intron | 30.0% |
| TGCACATGAAAATAGAAACA+TGG | - | chr7_2:72394904-72394923 | None:intergenic | 30.0% | |
| TTTCATGTGCAATCAGAAAT+TGG | + | chr7_2:72394913-72394932 | Msa1074510:intron | 30.0% | |
| GCTGATGAATTTCAAGAAAT+AGG | + | chr7_2:72394937-72394956 | Msa1074510:five_prime_UTR | 30.0% | |
| ! | GGTATGACAATTAAAGGTAT+CGG | + | chr7_2:72394958-72394977 | Msa1074510:intron | 30.0% |
| ATATGAGAAATCAAGCAACA+TGG | + | chr7_2:72395161-72395180 | Msa1074510:exon | 30.0% | |
| TGTTGTCATTGTCAATATGT+TGG | + | chr7_2:72395490-72395509 | Msa1074510:intron | 30.0% | |
| ATTGAAATTGCAGTAGCTAT+TGG | + | chr7_2:72395558-72395577 | Msa1074510:intron | 30.0% | |
| TTGAAATTGCAGTAGCTATT+GGG | + | chr7_2:72395559-72395578 | Msa1074510:intron | 30.0% | |
| !!! | TCTTGTTGCTTTTTCTATGA+AGG | - | chr7_2:72395608-72395627 | None:intergenic | 30.0% |
| ! | GTTAAATGCCATTTATGATG+CGG | - | chr7_2:72395734-72395753 | None:intergenic | 30.0% |
| TAACTCATAATCAAGTTCTG+AGG | + | chr7_2:72395772-72395791 | Msa1074510:intron | 30.0% | |
| GCTTGACAGATTTACATATT+AGG | + | chr7_2:72395962-72395981 | Msa1074510:intron | 30.0% | |
| TGAATGAGTGATTGAAACTA+TGG | + | chr7_2:72396062-72396081 | Msa1074510:intron | 30.0% | |
| ! | TTAACCCTTTGTGTTATTGT+TGG | + | chr7_2:72396165-72396184 | Msa1074510:intron | 30.0% |
| CTATTCCAACAATAACACAA+AGG | - | chr7_2:72396173-72396192 | None:intergenic | 30.0% | |
| AGAATGAATGAGTGGAAATT+TGG | + | chr7_2:72396412-72396431 | Msa1074510:intron | 30.0% | |
| ATGATATATGGCTACATGAT+TGG | + | chr7_2:72396829-72396848 | Msa1074510:intron | 30.0% | |
| ACTACAAGTCAAAATAACAC+AGG | + | chr7_2:72397094-72397113 | Msa1074510:intron | 30.0% | |
| TCTTGGCTGTATTTGTAAAT+TGG | + | chr7_2:72397205-72397224 | Msa1074510:intron | 30.0% | |
| TTGAATCTTGAAAAGGAAAG+CGG | - | chr7_2:72397257-72397276 | None:intergenic | 30.0% | |
| TATTGTTTCAACCTTCCAAT+TGG | + | chr7_2:72397323-72397342 | Msa1074510:intron | 30.0% | |
| ! | ATTAGAATTTAGGACACCTT+TGG | + | chr7_2:72397523-72397542 | Msa1074510:intron | 30.0% |
| TAAGCAATGTTGAGAACAAT+TGG | + | chr7_2:72397708-72397727 | Msa1074510:intron | 30.0% | |
| AAGCAATGTTGAGAACAATT+GGG | + | chr7_2:72397709-72397728 | Msa1074510:intron | 30.0% | |
| GTTATTTGCATAGAATCACA+AGG | + | chr7_2:72397987-72398006 | Msa1074510:CDS | 30.0% | |
| ! | GACTAAAGTGCTCAATATAA+TGG | + | chr7_2:72398122-72398141 | Msa1074510:intron | 30.0% |
| ATTGTAGGATTAAGCATCAA+AGG | - | chr7_2:72398610-72398629 | None:intergenic | 30.0% | |
| AAAGATGATTTCATGGATGG+AGG | - | chr7_2:72394411-72394430 | None:intergenic | 35.0% | |
| TGAAGAGATGAAGATGATGA+TGG | - | chr7_2:72394491-72394510 | None:intergenic | 35.0% | |
| !!! | TGAATGAGTTGCTTTTGTAG+AGG | - | chr7_2:72394515-72394534 | None:intergenic | 35.0% |
| TTTGGATGAAAGAGAGAGAA+AGG | - | chr7_2:72394626-72394645 | None:intergenic | 35.0% | |
| ! | AAATGCTTTTGGATGTGAGT+TGG | + | chr7_2:72395423-72395442 | Msa1074510:intron | 35.0% |
| !! | ATAATCAAGTTCTGAGGTCA+TGG | + | chr7_2:72395778-72395797 | Msa1074510:intron | 35.0% |
| !!! | TACTTTTATTGGGTGTCACT+TGG | + | chr7_2:72396216-72396235 | Msa1074510:intron | 35.0% |
| !!! | TTGGTTTGTTTTGGGTGTTT+TGG | + | chr7_2:72396235-72396254 | Msa1074510:intron | 35.0% |
| TCAGTTATCCTTGCACAATA+AGG | + | chr7_2:72396326-72396345 | Msa1074510:intron | 35.0% | |
| TTCTTAGATGTATAGTGCTG+TGG | + | chr7_2:72396374-72396393 | Msa1074510:intron | 35.0% | |
| TGTATAGTGCTGTGGAAATT+TGG | + | chr7_2:72396382-72396401 | Msa1074510:intron | 35.0% | |
| !! | GAGTCTTTAGAATGAATGAG+TGG | + | chr7_2:72396404-72396423 | Msa1074510:intron | 35.0% |
| !!! | AAAGTAGCTTGCTTTTCTCT+TGG | + | chr7_2:72396453-72396472 | Msa1074510:intron | 35.0% |
| ACACAATTAACATAACAGGG+AGG | - | chr7_2:72396714-72396733 | None:intergenic | 35.0% | |
| !!! | ACTTTTTGAAACCATGTCCA+AGG | + | chr7_2:72397054-72397073 | Msa1074510:intron | 35.0% |
| !!! | CTTTTTGAAACCATGTCCAA+GGG | + | chr7_2:72397055-72397074 | Msa1074510:intron | 35.0% |
| ! | ACAAAAGTCATTGAAAGTGC+TGG | - | chr7_2:72397137-72397156 | None:intergenic | 35.0% |
| TCTGCAGAAGAAATCAGAAT+AGG | + | chr7_2:72397166-72397185 | Msa1074510:intron | 35.0% | |
| CTGCAGAAGAAATCAGAATA+GGG | + | chr7_2:72397167-72397186 | Msa1074510:intron | 35.0% | |
| TGAATCTTGAAAAGGAAAGC+GGG | - | chr7_2:72397256-72397275 | None:intergenic | 35.0% | |
| AGATTCAAAGTTGTTCCGAA+AGG | + | chr7_2:72397269-72397288 | Msa1074510:intron | 35.0% | |
| ATGGATAGTTAGATGCCTTT+CGG | - | chr7_2:72397287-72397306 | None:intergenic | 35.0% | |
| ! | ATAGTGTTGTTGGAAAACGA+TGG | - | chr7_2:72397306-72397325 | None:intergenic | 35.0% |
| GGTTGAAACAATAGTGTTGT+TGG | - | chr7_2:72397316-72397335 | None:intergenic | 35.0% | |
| CTTCATTCAACAGAATTGCA+AGG | + | chr7_2:72397869-72397888 | Msa1074510:intron | 35.0% | |
| !!! | TTGGTTCTATTTTTATGGCG+AGG | + | chr7_2:72398039-72398058 | Msa1074510:intron | 35.0% |
| TAGCAATTAGCAAAGGCAAA+TGG | - | chr7_2:72398078-72398097 | None:intergenic | 35.0% | |
| AACCTGATAGCAATTAGCAA+AGG | - | chr7_2:72398085-72398104 | None:intergenic | 35.0% | |
| ! | TCAGGTTCTGATCTTAAGTT+AGG | + | chr7_2:72398098-72398117 | Msa1074510:intron | 35.0% |
| ! | CAGGTTCTGATCTTAAGTTA+GGG | + | chr7_2:72398099-72398118 | Msa1074510:intron | 35.0% |
| ! | AGGTTCTGATCTTAAGTTAG+GGG | + | chr7_2:72398100-72398119 | Msa1074510:intron | 35.0% |
| GACATGAGAAAACCAAACAT+TGG | - | chr7_2:72398245-72398264 | None:intergenic | 35.0% | |
| TGATTTCATGGATGGAGGTT+GGG | - | chr7_2:72394406-72394425 | None:intergenic | 40.0% | |
| ATGATTTCATGGATGGAGGT+TGG | - | chr7_2:72394407-72394426 | None:intergenic | 40.0% | |
| !!! | GATGGCTTTATTTTAGTGGG+AGG | - | chr7_2:72394473-72394492 | None:intergenic | 40.0% |
| AGATAGCAACACACACTTCT+GGG | + | chr7_2:72394756-72394775 | Msa1074510:five_prime_UTR | 40.0% | |
| AATCAAGCAACATGGTTGCA+AGG | + | chr7_2:72395169-72395188 | Msa1074510:CDS | 40.0% | |
| !!! | GGTGTCACTTGGTTTGTTTT+GGG | + | chr7_2:72396227-72396246 | Msa1074510:intron | 40.0% |
| GCTAAACATGCAATCATGAC+AGG | + | chr7_2:72396283-72396302 | Msa1074510:intron | 40.0% | |
| ATAACAGGGAGGAAAATAGC+GGG | - | chr7_2:72396703-72396722 | None:intergenic | 40.0% | |
| CATAACAGGGAGGAAAATAG+CGG | - | chr7_2:72396704-72396723 | None:intergenic | 40.0% | |
| TGCAATCAGATGACATCACT+TGG | + | chr7_2:72397024-72397043 | Msa1074510:intron | 40.0% | |
| CTGATTTCTTCTGCAGAAAG+AGG | - | chr7_2:72397163-72397182 | None:intergenic | 40.0% | |
| GGACATTACTCACTACATCT+TGG | + | chr7_2:72397188-72397207 | Msa1074510:intron | 40.0% | |
| AATGTTGAGAACAATTGGGC+AGG | + | chr7_2:72397713-72397732 | Msa1074510:intron | 40.0% | |
| ! | AGCGTTGTGTTTGTGCATTT+TGG | + | chr7_2:72398020-72398039 | Msa1074510:intron | 40.0% |
| TGCCTTTGCTAATTGCTATC+AGG | + | chr7_2:72398080-72398099 | Msa1074510:intron | 40.0% | |
| TTCACTCGCCTTTGCTAATA+AGG | + | chr7_2:72398153-72398172 | Msa1074510:intron | 40.0% | |
| TTGTAGGATTGACGGTTTAG+TGG | + | chr7_2:72398188-72398207 | Msa1074510:intron | 40.0% | |
| TGTAGGTCAGTACCAATGTT+TGG | + | chr7_2:72398230-72398249 | Msa1074510:intron | 40.0% | |
| AAATGACCAATGAAGTTGCG+TGG | + | chr7_2:72398328-72398347 | Msa1074510:intron | 40.0% | |
| TATGTGTAAGGGACGATATG+AGG | + | chr7_2:72398723-72398742 | Msa1074510:CDS | 40.0% | |
| ACAAGCAGTGCAAATAACAG+GGG | - | chr7_2:72398769-72398788 | None:intergenic | 40.0% | |
| CACAAGCAGTGCAAATAACA+GGG | - | chr7_2:72398770-72398789 | None:intergenic | 40.0% | |
| ACACAAGCAGTGCAAATAAC+AGG | - | chr7_2:72398771-72398790 | None:intergenic | 40.0% | |
| ! | TGTTATTTGCACTGCTTGTG+TGG | + | chr7_2:72398770-72398789 | Msa1074510:CDS | 40.0% |
| GATTTCATGGATGGAGGTTG+GGG | - | chr7_2:72394405-72394424 | None:intergenic | 45.0% | |
| !!! | GGCTTTATTTTAGTGGGAGG+AGG | - | chr7_2:72394470-72394489 | None:intergenic | 45.0% |
| AATTTCGACGTGGTGGTCAA+CGG | - | chr7_2:72394572-72394591 | None:intergenic | 45.0% | |
| GAGATAGCAACACACACTTC+TGG | + | chr7_2:72394755-72394774 | Msa1074510:five_prime_UTR | 45.0% | |
| GATAGCAACACACACTTCTG+GGG | + | chr7_2:72394757-72394776 | Msa1074510:five_prime_UTR | 45.0% | |
| !!! | GGGTGTCACTTGGTTTGTTT+TGG | + | chr7_2:72396226-72396245 | Msa1074510:intron | 45.0% |
| !! | GTTCTATCCATTGACTCCCT+TGG | - | chr7_2:72397074-72397093 | None:intergenic | 45.0% |
| GTTCCTCCTGTGAAGATTGT+TGG | + | chr7_2:72397960-72397979 | Msa1074510:CDS | 45.0% | |
| ACTGCTCCAACAATCTTCAC+AGG | - | chr7_2:72397969-72397988 | None:intergenic | 45.0% | |
| TCGAAGAGACACACACACAT+TGG | - | chr7_2:72398284-72398303 | None:intergenic | 45.0% | |
| ACTCAACCACGCAACTTCAT+TGG | - | chr7_2:72398337-72398356 | None:intergenic | 45.0% | |
| AGGGACGATATGAGGATTAC+CGG | + | chr7_2:72398731-72398750 | Msa1074510:CDS | 45.0% | |
| ATTTGCACTGCTTGTGTGGT+TGG | + | chr7_2:72398774-72398793 | Msa1074510:CDS | 45.0% | |
| !! | ATATAAAAGAATAAAAAAAT+AGG | - | chr7_2:72398556-72398575 | None:intergenic | 5.0% |
| TGAGGAAGAGAGAGAGAGAG+TGG | - | chr7_2:72394366-72394385 | None:intergenic | 50.0% | |
| ! | GGTTTACGTGAGAGAGTGTG+AGG | - | chr7_2:72394384-72394403 | None:intergenic | 50.0% |
| GAGAGAGAATTTCGACGTGG+TGG | - | chr7_2:72394579-72394598 | None:intergenic | 50.0% | |
| GTGGAGAGAGAATTTCGACG+TGG | - | chr7_2:72394582-72394601 | None:intergenic | 50.0% | |
| GAACTGATGATACCTCAGCG+CGG | - | chr7_2:72394604-72394623 | None:intergenic | 50.0% | |
| ACCATGTCCAAGGGAGTCAA+TGG | + | chr7_2:72397064-72397083 | Msa1074510:intron | 50.0% | |
| !! | TCCATTGACTCCCTTGGACA+TGG | - | chr7_2:72397068-72397087 | None:intergenic | 50.0% |
| GCTCCAACAATCTTCACAGG+AGG | - | chr7_2:72397966-72397985 | None:intergenic | 50.0% | |
| TGTTGGTCAGCTTCAGCAGA+AGG | + | chr7_2:72398675-72398694 | Msa1074510:CDS | 50.0% | |
| GTTGGTCAGCTTCAGCAGAA+GGG | + | chr7_2:72398676-72398695 | Msa1074510:CDS | 50.0% | |
| ATGAGGATTACCGGTGCTCA+AGG | + | chr7_2:72398740-72398759 | Msa1074510:CDS | 50.0% | |
| CTGCTTGTGTGGTTGGAAAG+CGG | + | chr7_2:72398781-72398800 | Msa1074510:CDS | 50.0% | |
| TGTGGTTGGAAAGCGGCATA+GGG | + | chr7_2:72398788-72398807 | Msa1074510:CDS | 50.0% | |
| ! | AGCAACACACACTTCTGGGG+AGG | + | chr7_2:72394760-72394779 | Msa1074510:five_prime_UTR | 55.0% |
| ! | AACACACACTTCTGGGGAGG+AGG | + | chr7_2:72394763-72394782 | Msa1074510:five_prime_UTR | 55.0% |
| ACAGGGGAATCCTTGAGCAC+CGG | - | chr7_2:72398753-72398772 | None:intergenic | 55.0% | |
| GTGTGGTTGGAAAGCGGCAT+AGG | + | chr7_2:72398787-72398806 | Msa1074510:CDS | 55.0% | |
| TTCGACGTGGTGGTCAACGG+TGG | - | chr7_2:72394569-72394588 | None:intergenic | 60.0% | |
| ATTCTCTCTCCACCGCGCTG+AGG | + | chr7_2:72394589-72394608 | Msa1074510:five_prime_UTR | 60.0% | |
| CTGATGATACCTCAGCGCGG+TGG | - | chr7_2:72394601-72394620 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 72394356 | 72398825 | 72394356 | ID=Msa1074510;Name=Msa1074510 |
| chr7_2 | mRNA | 72394356 | 72398825 | 72394356 | ID=Msa1074510-mRNA-1;Parent=Msa1074510;Name=Msa1074510-mRNA-1;_AED=0.21;_eAED=0.22;_QI=366|0.6|0.66|1|0|0.16|6|0|105 |
| chr7_2 | exon | 72394356 | 72394610 | 72394356 | ID=Msa1074510-mRNA-1:exon:16679;Parent=Msa1074510-mRNA-1 |
| chr7_2 | exon | 72394720 | 72394784 | 72394720 | ID=Msa1074510-mRNA-1:exon:16680;Parent=Msa1074510-mRNA-1 |
| chr7_2 | exon | 72394929 | 72394958 | 72394929 | ID=Msa1074510-mRNA-1:exon:16681;Parent=Msa1074510-mRNA-1 |
| chr7_2 | exon | 72395147 | 72395190 | 72395147 | ID=Msa1074510-mRNA-1:exon:16682;Parent=Msa1074510-mRNA-1 |
| chr7_2 | exon | 72397916 | 72398008 | 72397916 | ID=Msa1074510-mRNA-1:exon:16683;Parent=Msa1074510-mRNA-1 |
| chr7_2 | exon | 72398632 | 72398825 | 72398632 | ID=Msa1074510-mRNA-1:exon:16684;Parent=Msa1074510-mRNA-1 |
| chr7_2 | five_prime_UTR | 72394356 | 72394610 | 72394356 | ID=Msa1074510-mRNA-1:five_prime_utr;Parent=Msa1074510-mRNA-1 |
| chr7_2 | five_prime_UTR | 72394720 | 72394784 | 72394720 | ID=Msa1074510-mRNA-1:five_prime_utr;Parent=Msa1074510-mRNA-1 |
| chr7_2 | five_prime_UTR | 72394929 | 72394958 | 72394929 | ID=Msa1074510-mRNA-1:five_prime_utr;Parent=Msa1074510-mRNA-1 |
| chr7_2 | five_prime_UTR | 72395147 | 72395162 | 72395147 | ID=Msa1074510-mRNA-1:five_prime_utr;Parent=Msa1074510-mRNA-1 |
| chr7_2 | CDS | 72395163 | 72395190 | 72395163 | ID=Msa1074510-mRNA-1:cds;Parent=Msa1074510-mRNA-1 |
| chr7_2 | CDS | 72397916 | 72398008 | 72397916 | ID=Msa1074510-mRNA-1:cds;Parent=Msa1074510-mRNA-1 |
| chr7_2 | CDS | 72398632 | 72398825 | 72398632 | ID=Msa1074510-mRNA-1:cds;Parent=Msa1074510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
