Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151940 | KEH32645.1 | 75.385 | 65 | 12 | 2 | 43 | 105 | 1 | 63 | 3.07e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151940 | A0A072V3A9 | 75.385 | 65 | 12 | 2 | 43 | 105 | 1 | 63 | 1.47e-21 | 90.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1074510 | Msa1151940 | 0.945013 | 6.743038e-104 | -8.615850e-47 |
| Msa1111600 | Msa1151940 | 0.830381 | 3.032924e-55 | -8.615850e-47 |
| Msa1151940 | Msa1182910 | 0.906373 | 1.591218e-80 | -8.615850e-47 |
| Msa1151940 | Msa1311210 | 0.908997 | 9.260948e-82 | -8.615850e-47 |
| Msa1151940 | Msa1357310 | 0.901351 | 2.926102e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151940 | MtrunA17_Chr4g0042641 | 85.714 | 28 | 4 | 0 | 78 | 105 | 17 | 44 | 4.60e-12 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCATGGATGGAGGTT+GGG | 0.325455 | 7_4:-36904692 | None:intergenic |
| GCTGATGAATTTCAAGAAAT+AGG | 0.329504 | 7_4:+36905226 | Msa1151940:five_prime_UTR |
| ACACAAGCAGTGCAAATAAC+AGG | 0.339261 | 7_4:-36909317 | None:intergenic |
| GAGATAGCAACACACACTTC+TGG | 0.342376 | 7_4:+36905044 | Msa1151940:five_prime_UTR |
| ACTCTCCAAGACCTCATCTT+TGG | 0.363030 | 7_4:-36909368 | None:intergenic |
| GTTCCTCCTATGAAGATTGT+TGG | 0.377420 | 7_4:+36908510 | Msa1151940:CDS |
| GTAGAAGAAAGATGATTTCA+TGG | 0.387224 | 7_4:-36904704 | None:intergenic |
| GATTTCATGGATGGAGGTTG+GGG | 0.404674 | 7_4:-36904691 | None:intergenic |
| ACTGCTCCAACAATCTTCAT+AGG | 0.423972 | 7_4:-36908516 | None:intergenic |
| ATGATTTCATGGATGGAGGT+TGG | 0.434492 | 7_4:-36904693 | None:intergenic |
| GTGTGGTTGGAAAGCGGCAC+AGG | 0.438612 | 7_4:+36909336 | Msa1151940:CDS |
| CAAAATAATCTCTTCAATGT+TGG | 0.450531 | 7_4:+36909207 | Msa1151940:CDS |
| AGATAGCAACACACACTTCT+GGG | 0.466301 | 7_4:+36905045 | Msa1151940:five_prime_UTR |
| ATTTGCACTGCTTGTGTGGT+TGG | 0.468289 | 7_4:+36909323 | Msa1151940:CDS |
| AGGGACGATATGAGGATTAC+CGG | 0.476410 | 7_4:+36909280 | Msa1151940:CDS |
| TGTTATTTGCACTGCTTGTG+TGG | 0.507323 | 7_4:+36909319 | Msa1151940:CDS |
| AAGAAAGATGATTTCATGGA+TGG | 0.509507 | 7_4:-36904700 | None:intergenic |
| AACACACACTTCTGGGGAGG+AGG | 0.536072 | 7_4:+36905052 | Msa1151940:five_prime_UTR |
| TGTTGGTCAGCTTCAGCAGA+AGG | 0.540325 | 7_4:+36909224 | Msa1151940:CDS |
| AATTTCGACGTGGTGGTCAA+CGG | 0.543936 | 7_4:-36904858 | None:intergenic |
| CACAAGCAGTGCAAATAACA+GGG | 0.546740 | 7_4:-36909316 | None:intergenic |
| TATGTGTAAGGGACGATATG+AGG | 0.546749 | 7_4:+36909272 | Msa1151940:CDS |
| AAAGATGATTTCATGGATGG+AGG | 0.549732 | 7_4:-36904697 | None:intergenic |
| TGATAGAAAATGATGAAAGA+AGG | 0.549869 | 7_4:-36904726 | None:intergenic |
| ATGAGGATTACCGGTGCTCA+AGG | 0.550612 | 7_4:+36909289 | Msa1151940:CDS |
| AATCAAGTAACATGGTTGCA+AGG | 0.590329 | 7_4:+36905458 | Msa1151940:CDS |
| GGTTTACGTGAGAGAGTGTG+AGG | 0.596141 | 7_4:-36904670 | None:intergenic |
| ACAGGGGAATCCTTGAGCAC+CGG | 0.609949 | 7_4:-36909299 | None:intergenic |
| TGAAGAGATGAAGATGATGA+TGG | 0.610421 | 7_4:-36904777 | None:intergenic |
| GCTCCAACAATCTTCATAGG+AGG | 0.618056 | 7_4:-36908513 | None:intergenic |
| ATTCTCTCTCCACCGCGCTG+AGG | 0.620415 | 7_4:+36904878 | Msa1151940:five_prime_UTR |
| GTTGGTCAGCTTCAGCAGAA+GGG | 0.620779 | 7_4:+36909225 | Msa1151940:CDS |
| CTGCTTGTGTGGTTGGAAAG+CGG | 0.632272 | 7_4:+36909330 | Msa1151940:CDS |
| GGGAAGCTATTCCAAAGATG+AGG | 0.641214 | 7_4:+36909357 | Msa1151940:CDS |
| TGTGGTTGGAAAGCGGCACA+GGG | 0.641999 | 7_4:+36909337 | Msa1151940:CDS |
| AGCAACACACACTTCTGGGG+AGG | 0.650153 | 7_4:+36905049 | Msa1151940:five_prime_UTR |
| ATATGAGAAATCAAGTAACA+TGG | 0.669116 | 7_4:+36905450 | Msa1151940:exon |
| GATAGCAACACACACTTCTG+GGG | 0.670885 | 7_4:+36905046 | Msa1151940:five_prime_UTR |
| TTCGACGTGGTGGTCAACGG+TGG | 0.670969 | 7_4:-36904855 | None:intergenic |
| GAGAGAGAATTTCGACGTGG+TGG | 0.679739 | 7_4:-36904865 | None:intergenic |
| GTTATTTGCATAGAATCACA+AGG | 0.699403 | 7_4:+36908537 | Msa1151940:CDS |
| CTGATGATACCTCAGCGCGG+TGG | 0.713867 | 7_4:-36904887 | None:intergenic |
| ACAAGCAGTGCAAATAACAG+GGG | 0.745311 | 7_4:-36909315 | None:intergenic |
| GTGGAGAGAGAATTTCGACG+TGG | 0.789373 | 7_4:-36904868 | None:intergenic |
| GAACTGATGATACCTCAGCG+CGG | 0.855378 | 7_4:-36904890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTATAAACTTTTAT+CGG | - | chr7_4:36906182-36906201 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTTTAAGTTTATT+TGG | + | chr7_4:36906287-36906306 | Msa1151940:intron | 10.0% |
| !!! | TTTTTAGTTTAAGTTTATTT+GGG | + | chr7_4:36906288-36906307 | Msa1151940:intron | 10.0% |
| !!! | TTAACTATAAGTTTTAATTT+TGG | + | chr7_4:36906844-36906863 | Msa1151940:intron | 10.0% |
| !!! | TAACTATAAGTTTTAATTTT+GGG | + | chr7_4:36906845-36906864 | Msa1151940:intron | 10.0% |
| !!! | TGTCATTTTTAAAATTAATT+TGG | - | chr7_4:36907199-36907218 | None:intergenic | 10.0% |
| !!! | CAAATAATATAATAATTTTG+TGG | - | chr7_4:36907916-36907935 | None:intergenic | 10.0% |
| !! | CACAAAATTATTATATTATT+TGG | + | chr7_4:36907914-36907933 | Msa1151940:intron | 10.0% |
| !! | TAAAATCATGAATTATATAT+TGG | + | chr7_4:36908232-36908251 | Msa1151940:intron | 10.0% |
| !! | AAAATCATGAATTATATATT+GGG | + | chr7_4:36908233-36908252 | Msa1151940:intron | 10.0% |
| !!! | CAAATTAAAATGAGTATTTT+TGG | - | chr7_4:36904933-36904952 | None:intergenic | 15.0% |
| !!! | CAAAAATACTCATTTTAATT+TGG | + | chr7_4:36904931-36904950 | Msa1151940:intron | 15.0% |
| !!! | GTTTTTGTAGTTTTAAATTT+TGG | + | chr7_4:36904999-36905018 | Msa1151940:intron | 15.0% |
| !! | ACTCAAAATTCAAAATATAA+TGG | - | chr7_4:36905115-36905134 | None:intergenic | 15.0% |
| !!! | TTTTGAGTAAACATTTTTTT+TGG | + | chr7_4:36905127-36905146 | Msa1151940:intron | 15.0% |
| !!! | TTCTGTTTTGTAAATTATAA+TGG | + | chr7_4:36905314-36905333 | Msa1151940:intron | 15.0% |
| !!! | TTGTAAATTATAATGGATAA+TGG | + | chr7_4:36905321-36905340 | Msa1151940:intron | 15.0% |
| !!! | AAGTTAACATTATAACTTTT+GGG | + | chr7_4:36905741-36905760 | Msa1151940:intron | 15.0% |
| !! | TTGATGTTTATAATTGAAAT+TGG | + | chr7_4:36906125-36906144 | Msa1151940:intron | 15.0% |
| !!! | TAAAAGTTTATAACTTTTTC+TGG | + | chr7_4:36906183-36906202 | Msa1151940:intron | 15.0% |
| !! | AAAAAACAGAATATGAAATT+GGG | - | chr7_4:36906217-36906236 | None:intergenic | 15.0% |
| !! | AAAAAAACAGAATATGAAAT+TGG | - | chr7_4:36906218-36906237 | None:intergenic | 15.0% |
| !! | ATTGTTTATATAAAGTAGTA+TGG | + | chr7_4:36906416-36906435 | Msa1151940:intron | 15.0% |
| !! | TACTAATCAAGTATAATATT+GGG | - | chr7_4:36907060-36907079 | None:intergenic | 15.0% |
| !! | ATACTAATCAAGTATAATAT+TGG | - | chr7_4:36907061-36907080 | None:intergenic | 15.0% |
| !! | AGGAATATTTAAATGATATA+TGG | + | chr7_4:36907367-36907386 | Msa1151940:intron | 15.0% |
| !!! | ATTTATTTTACACATTTAAC+AGG | - | chr7_4:36907983-36908002 | None:intergenic | 15.0% |
| !!! | TATACTTATATAGTGTTTTT+AGG | + | chr7_4:36908192-36908211 | Msa1151940:intron | 15.0% |
| !!! | CATTGATGATTATTTATTTT+AGG | + | chr7_4:36908319-36908338 | Msa1151940:intron | 15.0% |
| !!! | AAAACATAGTTTTAAATCAT+TGG | - | chr7_4:36908971-36908990 | None:intergenic | 15.0% |
| !! | TAAAACATTATTACTATTGT+AGG | - | chr7_4:36909174-36909193 | None:intergenic | 15.0% |
| !!! | TCATCATTTTCTATCAATTT+CGG | + | chr7_4:36904733-36904752 | Msa1151940:five_prime_UTR | 20.0% |
| !!! | AATTTTCCAGAAAGATAAAT+GGG | - | chr7_4:36905159-36905178 | None:intergenic | 20.0% |
| !!! | TAATTTTCCAGAAAGATAAA+TGG | - | chr7_4:36905160-36905179 | None:intergenic | 20.0% |
| !!! | TTTTTCATATGTGAAAAGAT+TGG | + | chr7_4:36905557-36905576 | Msa1151940:intron | 20.0% |
| !!! | CAAGTTAACATTATAACTTT+TGG | + | chr7_4:36905740-36905759 | Msa1151940:intron | 20.0% |
| !! | AAAAAAAATCGCATCATAAA+TGG | + | chr7_4:36906011-36906030 | Msa1151940:intron | 20.0% |
| !!! | AAACTTTTATCGGTAATAAA+AGG | - | chr7_4:36906172-36906191 | None:intergenic | 20.0% |
| !!! | GTTTATTTGGGATTTTTTAA+TGG | + | chr7_4:36906300-36906319 | Msa1151940:intron | 20.0% |
| !!! | ACGTAAGTAATTAACATTTT+GGG | + | chr7_4:36906522-36906541 | Msa1151940:intron | 20.0% |
| !!! | TTTGTTGAAGTACTTTTATT+GGG | + | chr7_4:36906790-36906809 | Msa1151940:intron | 20.0% |
| !! | ACTAATCAAGTATAATATTG+GGG | - | chr7_4:36907059-36907078 | None:intergenic | 20.0% |
| !!! | GCAAGATTATATTACTTTTT+GGG | - | chr7_4:36907177-36907196 | None:intergenic | 20.0% |
| !! | ATATCATAAACACAACTATT+TGG | + | chr7_4:36907285-36907304 | Msa1151940:intron | 20.0% |
| !!! | TTTTATGCTATGACAAAAAT+AGG | + | chr7_4:36907347-36907366 | Msa1151940:intron | 20.0% |
| !!! | TGTTTTATACATTTACCAAT+TGG | - | chr7_4:36907891-36907910 | None:intergenic | 20.0% |
| !! | TTATTTGATAAAGAGATATC+AGG | - | chr7_4:36908044-36908063 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTCATTAGAATTT+AGG | + | chr7_4:36908063-36908082 | Msa1151940:intron | 20.0% |
| !!! | AGGTTTTTTTTTATGTTTGT+AGG | + | chr7_4:36908723-36908742 | Msa1151940:intron | 20.0% |
| !!! | ATTTGATGATATAAAACTGT+AGG | + | chr7_4:36908764-36908783 | Msa1151940:intron | 20.0% |
| !! | ATCTTGCTTTAATAATGATT+TGG | + | chr7_4:36909075-36909094 | Msa1151940:intron | 20.0% |
| !! | ATTCAAAAAGATATGTGTAA+GGG | + | chr7_4:36909261-36909280 | Msa1151940:CDS | 20.0% |
| ! | TGATAGAAAATGATGAAAGA+AGG | - | chr7_4:36904729-36904748 | None:intergenic | 25.0% |
| ! | TATAAATCCGAAGATGAAAA+TGG | - | chr7_4:36905089-36905108 | None:intergenic | 25.0% |
| ! | GAAATAGGTATGACAATTAA+AGG | + | chr7_4:36905241-36905260 | Msa1151940:intron | 25.0% |
| !! | TATGTTAGCTTCAAATATGA+TGG | + | chr7_4:36905357-36905376 | Msa1151940:intron | 25.0% |
| !! | ATGTTAGCTTCAAATATGAT+GGG | + | chr7_4:36905358-36905377 | Msa1151940:intron | 25.0% |
| ! | ATATGAGAAATCAAGTAACA+TGG | + | chr7_4:36905450-36905469 | Msa1151940:exon | 25.0% |
| !!! | CATGTTATTTTCACATAGTT+TGG | + | chr7_4:36905671-36905690 | Msa1151940:intron | 25.0% |
| !!! | CTGTTTTTAAGAAATGCTTT+TGG | + | chr7_4:36905701-36905720 | Msa1151940:intron | 25.0% |
| ! | ATAGAAAAAGCAACAAGAAA+AGG | + | chr7_4:36905899-36905918 | Msa1151940:intron | 25.0% |
| ! | TTGAATGAGTGATTGAAATT+AGG | + | chr7_4:36906348-36906367 | Msa1151940:intron | 25.0% |
| ! | TGAATGAGTGATTGAAATTA+GGG | + | chr7_4:36906349-36906368 | Msa1151940:intron | 25.0% |
| ! | ATTGAAATTAGGGTTCAAAA+AGG | + | chr7_4:36906359-36906378 | Msa1151940:intron | 25.0% |
| ! | TTGAAATTAGGGTTCAAAAA+GGG | + | chr7_4:36906360-36906379 | Msa1151940:intron | 25.0% |
| !! | TTGTTCTTTTGTTCAAATTC+AGG | + | chr7_4:36906455-36906474 | Msa1151940:intron | 25.0% |
| !! | GACGTAAGTAATTAACATTT+TGG | + | chr7_4:36906521-36906540 | Msa1151940:intron | 25.0% |
| !! | CGTAAGTAATTAACATTTTG+GGG | + | chr7_4:36906523-36906542 | Msa1151940:intron | 25.0% |
| !! | GTAAGTAATTAACATTTTGG+GGG | + | chr7_4:36906524-36906543 | Msa1151940:intron | 25.0% |
| !! | TAAGTAATTAACATTTTGGG+GGG | + | chr7_4:36906525-36906544 | Msa1151940:intron | 25.0% |
| ! | TGATATCTTTGTTCAAACTA+TGG | + | chr7_4:36906646-36906665 | Msa1151940:intron | 25.0% |
| !!! | CACTTTTTATGTTTATCACT+TGG | + | chr7_4:36906721-36906740 | Msa1151940:intron | 25.0% |
| ! | TATTCCAACAATAACACAAA+GGG | - | chr7_4:36906756-36906775 | None:intergenic | 25.0% |
| !!! | GTTTGTTGAAGTACTTTTAT+TGG | + | chr7_4:36906789-36906808 | Msa1151940:intron | 25.0% |
| ! | TTAATTTACCTTATTGTGCA+AGG | - | chr7_4:36906921-36906940 | None:intergenic | 25.0% |
| !!! | GGCAAGATTATATTACTTTT+TGG | - | chr7_4:36907178-36907197 | None:intergenic | 25.0% |
| ! | ATGACACAATTAACATAACA+GGG | - | chr7_4:36907267-36907286 | None:intergenic | 25.0% |
| ! | TATGACACAATTAACATAAC+AGG | - | chr7_4:36907268-36907287 | None:intergenic | 25.0% |
| ! | AACAACTTTGAATCTTGAAA+AGG | - | chr7_4:36907814-36907833 | None:intergenic | 25.0% |
| ! | TTATACATTTACCAATTGGA+AGG | - | chr7_4:36907887-36907906 | None:intergenic | 25.0% |
| !! | AAACTAAAGTGACAATTTTG+TGG | - | chr7_4:36908009-36908028 | None:intergenic | 25.0% |
| ! | AGTATGAACATATATTCCAA+AGG | - | chr7_4:36908092-36908111 | None:intergenic | 25.0% |
| ! | TACTCTATATGTTCTTTGTA+TGG | + | chr7_4:36908108-36908127 | Msa1151940:intron | 25.0% |
| ! | TATATGTTCTTTGTATGGAT+TGG | + | chr7_4:36908113-36908132 | Msa1151940:intron | 25.0% |
| ! | AAATAATCATCAATGTCATG+TGG | - | chr7_4:36908314-36908333 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTAATTTCATGAC+AGG | + | chr7_4:36908444-36908463 | Msa1151940:intron | 25.0% |
| !! | TTTTGCTTTCTTGATAGATT+TGG | + | chr7_4:36908488-36908507 | Msa1151940:CDS | 25.0% |
| ! | AAAAAAAACCTTATTAGCAG+AGG | - | chr7_4:36908714-36908733 | None:intergenic | 25.0% |
| !! | TTTTATGTTTGTAGGATTGA+CGG | + | chr7_4:36908731-36908750 | Msa1151940:intron | 25.0% |
| !! | TTTTATAGTACTCTTCAATG+TGG | + | chr7_4:36908905-36908924 | Msa1151940:intron | 25.0% |
| !!! | ATTGAAGAGATTATTTTGCA+AGG | - | chr7_4:36909205-36909224 | None:intergenic | 25.0% |
| ! | CAAAATAATCTCTTCAATGT+TGG | + | chr7_4:36909207-36909226 | Msa1151940:CDS | 25.0% |
| ! | GATTCAAAAAGATATGTGTA+AGG | + | chr7_4:36909260-36909279 | Msa1151940:CDS | 25.0% |
| AAGAAAGATGATTTCATGGA+TGG | - | chr7_4:36904703-36904722 | None:intergenic | 30.0% | |
| GTAGAAGAAAGATGATTTCA+TGG | - | chr7_4:36904707-36904726 | None:intergenic | 30.0% | |
| !!! | GATGATGGCTTTATTTTAGT+GGG | - | chr7_4:36904765-36904784 | None:intergenic | 30.0% |
| !!! | TGATGATGGCTTTATTTTAG+TGG | - | chr7_4:36904766-36904785 | None:intergenic | 30.0% |
| ! | GATTCATCCATTTTCATCTT+CGG | + | chr7_4:36905079-36905098 | Msa1151940:intron | 30.0% |
| TCAAATCCCATTTATCTTTC+TGG | + | chr7_4:36905150-36905169 | Msa1151940:intron | 30.0% | |
| TGCACATGAAAATAGAAACA+TGG | - | chr7_4:36905193-36905212 | None:intergenic | 30.0% | |
| TTTCATGTGCAATCAGAAAT+TGG | + | chr7_4:36905202-36905221 | Msa1151940:intron | 30.0% | |
| GCTGATGAATTTCAAGAAAT+AGG | + | chr7_4:36905226-36905245 | Msa1151940:five_prime_UTR | 30.0% | |
| TGTTGTCATTGTCAATATGT+TGG | + | chr7_4:36905779-36905798 | Msa1151940:intron | 30.0% | |
| ATTGAAATTGCAGTAGCTAT+TGG | + | chr7_4:36905847-36905866 | Msa1151940:intron | 30.0% | |
| TTGAAATTGCAGTAGCTATT+GGG | + | chr7_4:36905848-36905867 | Msa1151940:intron | 30.0% | |
| !!! | TCTTGTTGCTTTTTCTATGA+AGG | - | chr7_4:36905897-36905916 | None:intergenic | 30.0% |
| TAACTCATAATCAAGTTCTG+AGG | + | chr7_4:36906060-36906079 | Msa1151940:intron | 30.0% | |
| GCTTGACAGATTTACATATT+AGG | + | chr7_4:36906250-36906269 | Msa1151940:intron | 30.0% | |
| TTCAAAAAGGGCTATGATAA+AGG | + | chr7_4:36906372-36906391 | Msa1151940:intron | 30.0% | |
| ! | TTAACCCTTTGTGTTATTGT+TGG | + | chr7_4:36906749-36906768 | Msa1151940:intron | 30.0% |
| CTATTCCAACAATAACACAA+AGG | - | chr7_4:36906757-36906776 | None:intergenic | 30.0% | |
| ATGATATATGGCTACATGAT+TGG | + | chr7_4:36907379-36907398 | Msa1151940:intron | 30.0% | |
| ACTACAAGTCAAAATAACAC+AGG | + | chr7_4:36907644-36907663 | Msa1151940:intron | 30.0% | |
| TCTTGGCTGTATTTGTAAAT+TGG | + | chr7_4:36907755-36907774 | Msa1151940:intron | 30.0% | |
| TTGAATCTTGAAAAGGAAAG+CGG | - | chr7_4:36907807-36907826 | None:intergenic | 30.0% | |
| ! | AGATTCAAAGTTGTTCTGAA+AGG | + | chr7_4:36907819-36907838 | Msa1151940:intron | 30.0% |
| TATTGTTTCAACCTTCCAAT+TGG | + | chr7_4:36907873-36907892 | Msa1151940:intron | 30.0% | |
| ! | ATTAGAATTTAGGACACCTT+TGG | + | chr7_4:36908073-36908092 | Msa1151940:intron | 30.0% |
| TAAGCAATGTTGAGAACAAT+TGG | + | chr7_4:36908258-36908277 | Msa1151940:intron | 30.0% | |
| AAGCAATGTTGAGAACAATT+GGG | + | chr7_4:36908259-36908278 | Msa1151940:intron | 30.0% | |
| GTTATTTGCATAGAATCACA+AGG | + | chr7_4:36908537-36908556 | Msa1151940:CDS | 30.0% | |
| !!! | GCCTTTTGGTTCTATTTTTA+TGG | + | chr7_4:36908584-36908603 | Msa1151940:intron | 30.0% |
| GCCATAAAAATAGAACCAAA+AGG | - | chr7_4:36908588-36908607 | None:intergenic | 30.0% | |
| ! | GACTAAAGTGCTCAATATAA+TGG | + | chr7_4:36908672-36908691 | Msa1151940:intron | 30.0% |
| ATTGTAGGATTAAGCATCAA+AGG | - | chr7_4:36909159-36909178 | None:intergenic | 30.0% | |
| AAAGATGATTTCATGGATGG+AGG | - | chr7_4:36904700-36904719 | None:intergenic | 35.0% | |
| TGAAGAGATGAAGATGATGA+TGG | - | chr7_4:36904780-36904799 | None:intergenic | 35.0% | |
| !!! | TGAATGAGTTGCTTTTGTAG+AGG | - | chr7_4:36904804-36904823 | None:intergenic | 35.0% |
| TTTGGATGAAAGAGAGAGAA+AGG | - | chr7_4:36904915-36904934 | None:intergenic | 35.0% | |
| AATCAAGTAACATGGTTGCA+AGG | + | chr7_4:36905458-36905477 | Msa1151940:CDS | 35.0% | |
| ! | AAATGCTTTTGGATGTGAGT+TGG | + | chr7_4:36905712-36905731 | Msa1151940:intron | 35.0% |
| !! | ATAATCAAGTTCTGAGGTCA+TGG | + | chr7_4:36906066-36906085 | Msa1151940:intron | 35.0% |
| !!! | TACTTTTATTGGGTGTCACT+TGG | + | chr7_4:36906800-36906819 | Msa1151940:intron | 35.0% |
| !!! | TTGGTTTGTTTTGGGTGTTT+TGG | + | chr7_4:36906819-36906838 | Msa1151940:intron | 35.0% |
| TCAGTTATCCTTGCACAATA+AGG | + | chr7_4:36906910-36906929 | Msa1151940:intron | 35.0% | |
| ATCTTAGATGTATAGTGCAG+TGG | + | chr7_4:36906954-36906973 | Msa1151940:intron | 35.0% | |
| TGTATAGTGCAGTGGAAATT+TGG | + | chr7_4:36906962-36906981 | Msa1151940:intron | 35.0% | |
| !!! | AAAGTAGCTTGCTTTTCTCT+TGG | + | chr7_4:36907003-36907022 | Msa1151940:intron | 35.0% |
| ACACAATTAACATAACAGGG+AGG | - | chr7_4:36907264-36907283 | None:intergenic | 35.0% | |
| !!! | ACTTTTTGAAACCATGTCCA+AGG | + | chr7_4:36907604-36907623 | Msa1151940:intron | 35.0% |
| !!! | CTTTTTGAAACCATGTCCAA+GGG | + | chr7_4:36907605-36907624 | Msa1151940:intron | 35.0% |
| ! | ACAAAAGTCATTGAAAGTGC+TGG | - | chr7_4:36907687-36907706 | None:intergenic | 35.0% |
| TCTGCAGAAGAAATCAGAAT+AGG | + | chr7_4:36907716-36907735 | Msa1151940:intron | 35.0% | |
| CTGCAGAAGAAATCAGAATA+GGG | + | chr7_4:36907717-36907736 | Msa1151940:intron | 35.0% | |
| TGAATCTTGAAAAGGAAAGC+GGG | - | chr7_4:36907806-36907825 | None:intergenic | 35.0% | |
| ! | ATAGTGTTGTTGGAAAACGA+TGG | - | chr7_4:36907856-36907875 | None:intergenic | 35.0% |
| GGTTGAAACAATAGTGTTGT+TGG | - | chr7_4:36907866-36907885 | None:intergenic | 35.0% | |
| CTTCATTCAACAGAATTGCA+AGG | + | chr7_4:36908419-36908438 | Msa1151940:intron | 35.0% | |
| !!! | TTGGTTCTATTTTTATGGCG+AGG | + | chr7_4:36908589-36908608 | Msa1151940:intron | 35.0% |
| AACCTGATAGCAATTAGCAA+AGG | - | chr7_4:36908635-36908654 | None:intergenic | 35.0% | |
| ! | TCAGGTTCTGATCTTAAGTT+AGG | + | chr7_4:36908648-36908667 | Msa1151940:intron | 35.0% |
| ! | CAGGTTCTGATCTTAAGTTA+GGG | + | chr7_4:36908649-36908668 | Msa1151940:intron | 35.0% |
| ! | AGGTTCTGATCTTAAGTTAG+GGG | + | chr7_4:36908650-36908669 | Msa1151940:intron | 35.0% |
| GACATGAGAAAACCAAACAT+TGG | - | chr7_4:36908796-36908815 | None:intergenic | 35.0% | |
| AAATGACCAATGAAGTTGTG+TGG | + | chr7_4:36908877-36908896 | Msa1151940:intron | 35.0% | |
| TGATTTCATGGATGGAGGTT+GGG | - | chr7_4:36904695-36904714 | None:intergenic | 40.0% | |
| ATGATTTCATGGATGGAGGT+TGG | - | chr7_4:36904696-36904715 | None:intergenic | 40.0% | |
| !!! | GATGGCTTTATTTTAGTGGG+AGG | - | chr7_4:36904762-36904781 | None:intergenic | 40.0% |
| AGATAGCAACACACACTTCT+GGG | + | chr7_4:36905045-36905064 | Msa1151940:five_prime_UTR | 40.0% | |
| !!! | GGTGTCACTTGGTTTGTTTT+GGG | + | chr7_4:36906811-36906830 | Msa1151940:intron | 40.0% |
| TTGGGCTAAACATGCAATCA+TGG | + | chr7_4:36906863-36906882 | Msa1151940:intron | 40.0% | |
| ATAACAGGGAGGAAAATAGC+GGG | - | chr7_4:36907253-36907272 | None:intergenic | 40.0% | |
| CATAACAGGGAGGAAAATAG+CGG | - | chr7_4:36907254-36907273 | None:intergenic | 40.0% | |
| TGCAATCAGATGACATCACT+TGG | + | chr7_4:36907574-36907593 | Msa1151940:intron | 40.0% | |
| CTGATTTCTTCTGCAGAAAG+AGG | - | chr7_4:36907713-36907732 | None:intergenic | 40.0% | |
| GGACATTACTCACTACATCT+TGG | + | chr7_4:36907738-36907757 | Msa1151940:intron | 40.0% | |
| AATGTTGAGAACAATTGGGC+AGG | + | chr7_4:36908263-36908282 | Msa1151940:intron | 40.0% | |
| GTTCCTCCTATGAAGATTGT+TGG | + | chr7_4:36908510-36908529 | Msa1151940:CDS | 40.0% | |
| ACTGCTCCAACAATCTTCAT+AGG | - | chr7_4:36908519-36908538 | None:intergenic | 40.0% | |
| TAGCAATTAGCAAAGGCAAG+TGG | - | chr7_4:36908628-36908647 | None:intergenic | 40.0% | |
| TGCCTTTGCTAATTGCTATC+AGG | + | chr7_4:36908630-36908649 | Msa1151940:intron | 40.0% | |
| TTGTAGGATTGACGGTTTAG+CGG | + | chr7_4:36908739-36908758 | Msa1151940:intron | 40.0% | |
| TGTAGGTCAGTACCAATGTT+TGG | + | chr7_4:36908781-36908800 | Msa1151940:intron | 40.0% | |
| ATTCGAAGAGACACACACAT+TGG | - | chr7_4:36908835-36908854 | None:intergenic | 40.0% | |
| ACTCAACCACACAACTTCAT+TGG | - | chr7_4:36908886-36908905 | None:intergenic | 40.0% | |
| TATGTGTAAGGGACGATATG+AGG | + | chr7_4:36909272-36909291 | Msa1151940:CDS | 40.0% | |
| ACAAGCAGTGCAAATAACAG+GGG | - | chr7_4:36909318-36909337 | None:intergenic | 40.0% | |
| CACAAGCAGTGCAAATAACA+GGG | - | chr7_4:36909319-36909338 | None:intergenic | 40.0% | |
| ACACAAGCAGTGCAAATAAC+AGG | - | chr7_4:36909320-36909339 | None:intergenic | 40.0% | |
| ! | TGTTATTTGCACTGCTTGTG+TGG | + | chr7_4:36909319-36909338 | Msa1151940:CDS | 40.0% |
| GATTTCATGGATGGAGGTTG+GGG | - | chr7_4:36904694-36904713 | None:intergenic | 45.0% | |
| !!! | GGCTTTATTTTAGTGGGAGG+AGG | - | chr7_4:36904759-36904778 | None:intergenic | 45.0% |
| AATTTCGACGTGGTGGTCAA+CGG | - | chr7_4:36904861-36904880 | None:intergenic | 45.0% | |
| GAGATAGCAACACACACTTC+TGG | + | chr7_4:36905044-36905063 | Msa1151940:five_prime_UTR | 45.0% | |
| GATAGCAACACACACTTCTG+GGG | + | chr7_4:36905046-36905065 | Msa1151940:five_prime_UTR | 45.0% | |
| !! | CATTTTGGGGGGTCAAATTC+AGG | + | chr7_4:36906536-36906555 | Msa1151940:intron | 45.0% |
| !!! | GGGTGTCACTTGGTTTGTTT+TGG | + | chr7_4:36906810-36906829 | Msa1151940:intron | 45.0% |
| GCTAAACATGCAATCATGGC+AGG | + | chr7_4:36906867-36906886 | Msa1151940:intron | 45.0% | |
| !! | GTTCTATCCATTGACTCCCT+TGG | - | chr7_4:36907624-36907643 | None:intergenic | 45.0% |
| GCTCCAACAATCTTCATAGG+AGG | - | chr7_4:36908516-36908535 | None:intergenic | 45.0% | |
| ! | AGCGTTGTGTTTGTGCCTTT+TGG | + | chr7_4:36908570-36908589 | Msa1151940:intron | 45.0% |
| TTCACTCGCCTCTGCTAATA+AGG | + | chr7_4:36908703-36908722 | Msa1151940:intron | 45.0% | |
| AGGGACGATATGAGGATTAC+CGG | + | chr7_4:36909280-36909299 | Msa1151940:CDS | 45.0% | |
| ATTTGCACTGCTTGTGTGGT+TGG | + | chr7_4:36909323-36909342 | Msa1151940:CDS | 45.0% | |
| !! | ATATAAAAGAATAAAAAAAT+AGG | - | chr7_4:36909105-36909124 | None:intergenic | 5.0% |
| TGAGGAAGAGAGAGAGAGAG+TGG | - | chr7_4:36904655-36904674 | None:intergenic | 50.0% | |
| ! | GGTTTACGTGAGAGAGTGTG+AGG | - | chr7_4:36904673-36904692 | None:intergenic | 50.0% |
| GAGAGAGAATTTCGACGTGG+TGG | - | chr7_4:36904868-36904887 | None:intergenic | 50.0% | |
| GTGGAGAGAGAATTTCGACG+TGG | - | chr7_4:36904871-36904890 | None:intergenic | 50.0% | |
| GAACTGATGATACCTCAGCG+CGG | - | chr7_4:36904893-36904912 | None:intergenic | 50.0% | |
| ACCATGTCCAAGGGAGTCAA+TGG | + | chr7_4:36907614-36907633 | Msa1151940:intron | 50.0% | |
| !! | TCCATTGACTCCCTTGGACA+TGG | - | chr7_4:36907618-36907637 | None:intergenic | 50.0% |
| TGTTGGTCAGCTTCAGCAGA+AGG | + | chr7_4:36909224-36909243 | Msa1151940:CDS | 50.0% | |
| GTTGGTCAGCTTCAGCAGAA+GGG | + | chr7_4:36909225-36909244 | Msa1151940:CDS | 50.0% | |
| ATGAGGATTACCGGTGCTCA+AGG | + | chr7_4:36909289-36909308 | Msa1151940:CDS | 50.0% | |
| CTGCTTGTGTGGTTGGAAAG+CGG | + | chr7_4:36909330-36909349 | Msa1151940:CDS | 50.0% | |
| ! | AGCAACACACACTTCTGGGG+AGG | + | chr7_4:36905049-36905068 | Msa1151940:five_prime_UTR | 55.0% |
| ! | AACACACACTTCTGGGGAGG+AGG | + | chr7_4:36905052-36905071 | Msa1151940:five_prime_UTR | 55.0% |
| ACAGGGGAATCCTTGAGCAC+CGG | - | chr7_4:36909302-36909321 | None:intergenic | 55.0% | |
| TGTGGTTGGAAAGCGGCACA+GGG | + | chr7_4:36909337-36909356 | Msa1151940:CDS | 55.0% | |
| TTCGACGTGGTGGTCAACGG+TGG | - | chr7_4:36904858-36904877 | None:intergenic | 60.0% | |
| ATTCTCTCTCCACCGCGCTG+AGG | + | chr7_4:36904878-36904897 | Msa1151940:five_prime_UTR | 60.0% | |
| CTGATGATACCTCAGCGCGG+TGG | - | chr7_4:36904890-36904909 | None:intergenic | 60.0% | |
| GTGTGGTTGGAAAGCGGCAC+AGG | + | chr7_4:36909336-36909355 | Msa1151940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 36904645 | 36909377 | 36904645 | ID=Msa1151940;Name=Msa1151940 |
| chr7_4 | mRNA | 36904645 | 36909377 | 36904645 | ID=Msa1151940-mRNA-1;Parent=Msa1151940;Name=Msa1151940-mRNA-1;_AED=0.21;_eAED=0.22;_QI=366|0.6|0.66|1|0|0|6|0|105 |
| chr7_4 | exon | 36904645 | 36904899 | 36904645 | ID=Msa1151940-mRNA-1:exon:8702;Parent=Msa1151940-mRNA-1 |
| chr7_4 | exon | 36905009 | 36905073 | 36905009 | ID=Msa1151940-mRNA-1:exon:8703;Parent=Msa1151940-mRNA-1 |
| chr7_4 | exon | 36905218 | 36905247 | 36905218 | ID=Msa1151940-mRNA-1:exon:8704;Parent=Msa1151940-mRNA-1 |
| chr7_4 | exon | 36905436 | 36905479 | 36905436 | ID=Msa1151940-mRNA-1:exon:8705;Parent=Msa1151940-mRNA-1 |
| chr7_4 | exon | 36908466 | 36908558 | 36908466 | ID=Msa1151940-mRNA-1:exon:8706;Parent=Msa1151940-mRNA-1 |
| chr7_4 | exon | 36909181 | 36909377 | 36909181 | ID=Msa1151940-mRNA-1:exon:8707;Parent=Msa1151940-mRNA-1 |
| chr7_4 | five_prime_UTR | 36904645 | 36904899 | 36904645 | ID=Msa1151940-mRNA-1:five_prime_utr;Parent=Msa1151940-mRNA-1 |
| chr7_4 | five_prime_UTR | 36905009 | 36905073 | 36905009 | ID=Msa1151940-mRNA-1:five_prime_utr;Parent=Msa1151940-mRNA-1 |
| chr7_4 | five_prime_UTR | 36905218 | 36905247 | 36905218 | ID=Msa1151940-mRNA-1:five_prime_utr;Parent=Msa1151940-mRNA-1 |
| chr7_4 | five_prime_UTR | 36905436 | 36905451 | 36905436 | ID=Msa1151940-mRNA-1:five_prime_utr;Parent=Msa1151940-mRNA-1 |
| chr7_4 | CDS | 36905452 | 36905479 | 36905452 | ID=Msa1151940-mRNA-1:cds;Parent=Msa1151940-mRNA-1 |
| chr7_4 | CDS | 36908466 | 36908558 | 36908466 | ID=Msa1151940-mRNA-1:cds;Parent=Msa1151940-mRNA-1 |
| chr7_4 | CDS | 36909181 | 36909377 | 36909181 | ID=Msa1151940-mRNA-1:cds;Parent=Msa1151940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
