Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1311210 | Msa1357310 | 0.910833 | 1.203637e-82 | -8.615850e-47 |
| Msa1074510 | Msa1357310 | 0.877261 | 7.240421e-69 | -8.615850e-47 |
| Msa1111600 | Msa1357310 | 0.897510 | 1.311004e-76 | -8.615850e-47 |
| Msa1151940 | Msa1357310 | 0.901351 | 2.926102e-78 | -8.615850e-47 |
| Msa1182910 | Msa1357310 | 0.910852 | 1.177806e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATTATCCCAATAAAA+TGG | 0.235581 | tig0016062:+36299 | None:intergenic |
| TTGATATCTATATCAGCTTT+TGG | 0.255888 | tig0016062:-36409 | Msa1357310:three_prime_UTR |
| TAAAACATTATTACTATTGT+AGG | 0.283736 | tig0016062:+36640 | None:intergenic |
| TGATTTCATGGATGGAGGTT+GGG | 0.325455 | tig0016062:+41122 | None:intergenic |
| GCTGATGAATTTCAAGAAAT+AGG | 0.329504 | tig0016062:-40588 | Msa1357310:intron |
| TAAGCAATGTTGAGAACAAT+TGG | 0.330857 | tig0016062:-37552 | Msa1357310:intron |
| ACACAAGCAGTGCAAATAAC+AGG | 0.339261 | tig0016062:+36494 | None:intergenic |
| GAGATAGCAACACACACTTC+TGG | 0.342376 | tig0016062:-40770 | Msa1357310:five_prime_UTR |
| ATTGAAATTGCAGTAGCTAT+TGG | 0.344477 | tig0016062:-39967 | Msa1357310:intron |
| TTGAAATTGCAGTAGCTATT+GGG | 0.345843 | tig0016062:-39966 | Msa1357310:intron |
| ACTCTCCAAGACCTCATCTT+TGG | 0.363030 | tig0016062:+36443 | None:intergenic |
| GTTCCTCCTGTGAAGATTGT+TGG | 0.385035 | tig0016062:-37300 | Msa1357310:CDS |
| GTAGAAGAAAGATGATTTCA+TGG | 0.387224 | tig0016062:+41110 | None:intergenic |
| GATTTCATGGATGGAGGTTG+GGG | 0.404674 | tig0016062:+41123 | None:intergenic |
| GATTAATTAAAATAAAATAA+AGG | 0.418164 | tig0016062:+36375 | None:intergenic |
| TGTAGGTCAGTACCAATGTT+TGG | 0.427507 | tig0016062:-37030 | Msa1357310:three_prime_UTR |
| ATGATTTCATGGATGGAGGT+TGG | 0.434492 | tig0016062:+41121 | None:intergenic |
| GTGTGGTTGGAAAGCGGCAC+AGG | 0.438612 | tig0016062:-36475 | Msa1357310:three_prime_UTR |
| CTATTCCAAAGATGAGGTCT+TGG | 0.445964 | tig0016062:-36448 | Msa1357310:three_prime_UTR |
| CAAAATAATCTCTTCAATGT+TGG | 0.450531 | tig0016062:-36604 | Msa1357310:three_prime_UTR |
| AGATAGCAACACACACTTCT+GGG | 0.466301 | tig0016062:-40769 | Msa1357310:five_prime_UTR |
| ATTTGCACTGCTTGTGTGGT+TGG | 0.468289 | tig0016062:-36488 | Msa1357310:three_prime_UTR |
| AGGGACGATATGAGGATTAC+CGG | 0.476410 | tig0016062:-36531 | Msa1357310:three_prime_UTR |
| TGTTATTTGCACTGCTTGTG+TGG | 0.507323 | tig0016062:-36492 | Msa1357310:three_prime_UTR |
| AAGAAAGATGATTTCATGGA+TGG | 0.509507 | tig0016062:+41114 | None:intergenic |
| CTCATTCTTTCATTTAGCGA+CGG | 0.535557 | tig0016062:+40790 | None:intergenic |
| AACACACACTTCTGGGGAGG+AGG | 0.536072 | tig0016062:-40762 | Msa1357310:intron |
| TGTTGGTCAGCTTCAGCAGA+AGG | 0.540325 | tig0016062:-36587 | Msa1357310:three_prime_UTR |
| ATTGTAGGATTAAGCATCAA+AGG | 0.542360 | tig0016062:+36655 | None:intergenic |
| AATTTCGACGTGGTGGTCAA+CGG | 0.543936 | tig0016062:+40956 | None:intergenic |
| AAGCAATGTTGAGAACAATT+GGG | 0.544350 | tig0016062:-37551 | Msa1357310:CDS |
| CACAAGCAGTGCAAATAACA+GGG | 0.546740 | tig0016062:+36495 | None:intergenic |
| TATGTGTAAGGGACGATATG+AGG | 0.546749 | tig0016062:-36539 | Msa1357310:three_prime_UTR |
| TTGTAGGATTGACGGTTTAG+CGG | 0.547176 | tig0016062:-37072 | Msa1357310:intron |
| AAAGATGATTTCATGGATGG+AGG | 0.549732 | tig0016062:+41117 | None:intergenic |
| TGATAGAAAATGATGAAAGA+AGG | 0.549869 | tig0016062:+41088 | None:intergenic |
| ATGAGGATTACCGGTGCTCA+AGG | 0.550612 | tig0016062:-36522 | Msa1357310:three_prime_UTR |
| ATTTGATGATATAAAACTGT+AGG | 0.552523 | tig0016062:-37047 | Msa1357310:three_prime_UTR |
| AATGTTGAGAACAATTGGGC+AGG | 0.557609 | tig0016062:-37547 | Msa1357310:intron |
| AATCAAGCAACATGGTTGCA+AGG | 0.564145 | tig0016062:-40356 | Msa1357310:intron |
| GGTTTACGTGAGAGAGTGTG+AGG | 0.596141 | tig0016062:+41144 | None:intergenic |
| ACTGCTCCAACAATCTTCAC+AGG | 0.603142 | tig0016062:+37294 | None:intergenic |
| GACATGAGAAAACCAAACAT+TGG | 0.606635 | tig0016062:+37018 | None:intergenic |
| ACAGGGGAATCCTTGAGCAC+CGG | 0.609949 | tig0016062:+36512 | None:intergenic |
| TGAAGAGATGAAGATGATGA+TGG | 0.610421 | tig0016062:+41037 | None:intergenic |
| ATTCTCTCTCCACCGCGCTG+AGG | 0.620415 | tig0016062:-40936 | Msa1357310:intron |
| GTTGGTCAGCTTCAGCAGAA+GGG | 0.620779 | tig0016062:-36586 | Msa1357310:three_prime_UTR |
| CTGCTTGTGTGGTTGGAAAG+CGG | 0.632272 | tig0016062:-36481 | Msa1357310:three_prime_UTR |
| GGGAAGCTATTCCAAAGATG+AGG | 0.641214 | tig0016062:-36454 | Msa1357310:three_prime_UTR |
| TGTGGTTGGAAAGCGGCACA+GGG | 0.641999 | tig0016062:-36474 | Msa1357310:three_prime_UTR |
| AGCAACACACACTTCTGGGG+AGG | 0.650153 | tig0016062:-40765 | Msa1357310:five_prime_UTR |
| GCTCCAACAATCTTCACAGG+AGG | 0.664971 | tig0016062:+37297 | None:intergenic |
| GATAGCAACACACACTTCTG+GGG | 0.670885 | tig0016062:-40768 | Msa1357310:five_prime_UTR |
| TTCGACGTGGTGGTCAACGG+TGG | 0.670969 | tig0016062:+40959 | None:intergenic |
| GAGAGAGAATTTCGACGTGG+TGG | 0.679739 | tig0016062:+40949 | None:intergenic |
| GTTATTTGCATAGAATCACA+AGG | 0.699403 | tig0016062:-37273 | Msa1357310:intron |
| ATATGAGAAATCAAGCAACA+TGG | 0.704791 | tig0016062:-40364 | Msa1357310:CDS |
| CTGATGATACCTCAGCGCGG+TGG | 0.713867 | tig0016062:+40927 | None:intergenic |
| ACAAGCAGTGCAAATAACAG+GGG | 0.745311 | tig0016062:+36496 | None:intergenic |
| GTGGAGAGAGAATTTCGACG+TGG | 0.789373 | tig0016062:+40946 | None:intergenic |
| GAACTGATGATACCTCAGCG+CGG | 0.855378 | tig0016062:+40924 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTATAAACTTTTAT+CGG | + | tig0016062:37824-37843 | None:intergenic | 10.0% |
| !!! | TTAACTATAAGTTTTAATTT+TGG | - | tig0016062:38486-38505 | Msa1357310:intron | 10.0% |
| !!! | TAACTATAAGTTTTAATTTT+GGG | - | tig0016062:38487-38506 | Msa1357310:intron | 10.0% |
| !!! | TGTCATTTTTAAAATTAATT+TGG | + | tig0016062:38844-38863 | None:intergenic | 10.0% |
| !!! | CAAATAATATAATAATTTTG+TGG | + | tig0016062:39561-39580 | None:intergenic | 10.0% |
| !! | CACAAAATTATTATATTATT+TGG | - | tig0016062:39559-39578 | Msa1357310:intron | 10.0% |
| !! | TAAAATCATGAATTATATAT+TGG | - | tig0016062:39877-39896 | Msa1357310:intron | 10.0% |
| !! | AAAATCATGAATTATATATT+GGG | - | tig0016062:39878-39897 | Msa1357310:intron | 10.0% |
| !!! | CAAATTAAAATGAGTATTTT+TGG | + | tig0016062:36574-36593 | None:intergenic | 15.0% |
| !!! | CAAAAATACTCATTTTAATT+TGG | - | tig0016062:36572-36591 | Msa1357310:three_prime_UTR | 15.0% |
| !!! | GTTTTTGTAGTTTTAAATTT+TGG | - | tig0016062:36640-36659 | Msa1357310:three_prime_UTR | 15.0% |
| !! | ACTCAAAATTCAAAATATAA+TGG | + | tig0016062:36756-36775 | None:intergenic | 15.0% |
| !!! | TTTTGAGTAAACATTTTTTT+TGG | - | tig0016062:36768-36787 | Msa1357310:intron | 15.0% |
| !!! | TTCTGTTTTGTAAATTATAA+TGG | - | tig0016062:36955-36974 | Msa1357310:intron | 15.0% |
| !!! | TTGTAAATTATAATGGATAA+TGG | - | tig0016062:36962-36981 | Msa1357310:intron | 15.0% |
| !! | TTGATGTTTATAATTGAAAT+TGG | - | tig0016062:37767-37786 | Msa1357310:intron | 15.0% |
| !!! | TAAAAGTTTATAACTTTTTC+TGG | - | tig0016062:37825-37844 | Msa1357310:intron | 15.0% |
| !! | AAAAAACAGAATATGAAATT+GGG | + | tig0016062:37859-37878 | None:intergenic | 15.0% |
| !! | AAAAAAACAGAATATGAAAT+TGG | + | tig0016062:37860-37879 | None:intergenic | 15.0% |
| !!! | GTTTATTTGAGATTTTTTAA+TGG | - | tig0016062:37942-37961 | Msa1357310:intron | 15.0% |
| !! | ATTGTTTATATAAAGTAGTA+TGG | - | tig0016062:38058-38077 | Msa1357310:intron | 15.0% |
| !! | TACTAATCAAGTATAATATT+GGG | + | tig0016062:38705-38724 | None:intergenic | 15.0% |
| !! | ATACTAATCAAGTATAATAT+TGG | + | tig0016062:38706-38725 | None:intergenic | 15.0% |
| !! | AGGAATATTTAAATGATATA+TGG | - | tig0016062:39012-39031 | Msa1357310:intron | 15.0% |
| !!! | TTTTTTATACATTTACCAAT+TGG | + | tig0016062:39536-39555 | None:intergenic | 15.0% |
| !!! | ATTTATTTTACACATTTAAC+AGG | + | tig0016062:39628-39647 | None:intergenic | 15.0% |
| !!! | TATACTTATATAGTGTTTTT+AGG | - | tig0016062:39837-39856 | Msa1357310:intron | 15.0% |
| !!! | CATTGATGATTATTTATTTT+AGG | - | tig0016062:39964-39983 | Msa1357310:intron | 15.0% |
| !!! | AAAACATAGTTTTAAATCAT+TGG | + | tig0016062:40615-40634 | None:intergenic | 15.0% |
| !! | TAAAACATTATTACTATTGT+AGG | + | tig0016062:40818-40837 | None:intergenic | 15.0% |
| !!! | TTTATGTTTATCCATTTTAT+TGG | - | tig0016062:41145-41164 | Msa1357310:five_prime_UTR | 15.0% |
| !!! | TTATGTTTATCCATTTTATT+GGG | - | tig0016062:41146-41165 | Msa1357310:five_prime_UTR | 15.0% |
| !!! | TCATCATTTTCTATCAATTT+CGG | - | tig0016062:36374-36393 | Msa1357310:three_prime_UTR | 20.0% |
| !!! | AATTTTCCAGAAAGATAAAT+GGG | + | tig0016062:36800-36819 | None:intergenic | 20.0% |
| !!! | TAATTTTCCAGAAAGATAAA+TGG | + | tig0016062:36801-36820 | None:intergenic | 20.0% |
| !!! | TTTTTCATATGTGAAAAGAT+TGG | - | tig0016062:37198-37217 | Msa1357310:intron | 20.0% |
| !!! | CAAGTTAACATTATAACTTT+TGG | - | tig0016062:37381-37400 | Msa1357310:intron | 20.0% |
| !! | AAAAAAAATCGCATCATAAA+TGG | - | tig0016062:37653-37672 | Msa1357310:intron | 20.0% |
| !!! | AAACTTTTATCGGTAATAAA+AGG | + | tig0016062:37814-37833 | None:intergenic | 20.0% |
| !!! | ACGTAAGTAATTAACATTTT+GGG | - | tig0016062:38164-38183 | Msa1357310:intron | 20.0% |
| !!! | TTTGTTGAAGTACTTTTATT+GGG | - | tig0016062:38432-38451 | Msa1357310:intron | 20.0% |
| !! | ACTAATCAAGTATAATATTG+GGG | + | tig0016062:38704-38723 | None:intergenic | 20.0% |
| !! | CATTATAGTGATTTATATAG+TGG | - | tig0016062:38737-38756 | Msa1357310:intron | 20.0% |
| !!! | GCAAGATTATATTACTTTTT+GGG | + | tig0016062:38822-38841 | None:intergenic | 20.0% |
| !! | ATATCATAAACACAACTATT+TGG | - | tig0016062:38930-38949 | Msa1357310:intron | 20.0% |
| !!! | TTTTATGCTATGACAAAAAT+AGG | - | tig0016062:38992-39011 | Msa1357310:intron | 20.0% |
| !! | TTATTTGATAAAGAGATATC+AGG | + | tig0016062:39689-39708 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTCATTAGAATTT+AGG | - | tig0016062:39708-39727 | Msa1357310:intron | 20.0% |
| !! | AAAAAAAACCTTATTAGCAA+AGG | + | tig0016062:40359-40378 | None:intergenic | 20.0% |
| !!! | AAGGTTTTTTTTATGTTTGT+AGG | - | tig0016062:40367-40386 | Msa1357310:exon | 20.0% |
| !!! | ATTTGATGATATAAAACTGT+AGG | - | tig0016062:40408-40427 | Msa1357310:intron | 20.0% |
| !! | ATCTTGCTTTAATAATGATT+TGG | - | tig0016062:40719-40738 | Msa1357310:intron | 20.0% |
| !! | ATTCAAAAAGATATGTGTAA+GGG | - | tig0016062:40905-40924 | Msa1357310:intron | 20.0% |
| !! | TTGAAATTATCCCAATAAAA+TGG | + | tig0016062:41159-41178 | None:intergenic | 20.0% |
| ! | TGATAGAAAATGATGAAAGA+AGG | + | tig0016062:36370-36389 | None:intergenic | 25.0% |
| ! | TAAAAATCCGAAGATGAAAA+TGG | + | tig0016062:36730-36749 | None:intergenic | 25.0% |
| ! | GAAATAGGTATGACAATTAA+AGG | - | tig0016062:36882-36901 | Msa1357310:intron | 25.0% |
| !! | TATGTTAGCTTCAAATATGA+TGG | - | tig0016062:36998-37017 | Msa1357310:intron | 25.0% |
| !! | ATGTTAGCTTCAAATATGAT+GGG | - | tig0016062:36999-37018 | Msa1357310:intron | 25.0% |
| !!! | CATGTTATTTTCACATAGTT+TGG | - | tig0016062:37312-37331 | Msa1357310:CDS | 25.0% |
| !!! | CTGTTTTTAAGAAATGCTTT+TGG | - | tig0016062:37342-37361 | Msa1357310:CDS | 25.0% |
| ! | ATAGAAAAAGCAACAAGAAA+AGG | - | tig0016062:37540-37559 | Msa1357310:intron | 25.0% |
| ! | TTGAATGAGTGATTGAAATT+AGG | - | tig0016062:37990-38009 | Msa1357310:intron | 25.0% |
| ! | TGAATGAGTGATTGAAATTA+GGG | - | tig0016062:37991-38010 | Msa1357310:intron | 25.0% |
| ! | ATTGAAATTAGGGTTCAAAA+AGG | - | tig0016062:38001-38020 | Msa1357310:intron | 25.0% |
| ! | TTGAAATTAGGGTTCAAAAA+GGG | - | tig0016062:38002-38021 | Msa1357310:intron | 25.0% |
| !! | TTGTTCTTTTGTTCAAATTC+AGG | - | tig0016062:38097-38116 | Msa1357310:intron | 25.0% |
| !! | GACGTAAGTAATTAACATTT+TGG | - | tig0016062:38163-38182 | Msa1357310:intron | 25.0% |
| !! | CGTAAGTAATTAACATTTTG+GGG | - | tig0016062:38165-38184 | Msa1357310:intron | 25.0% |
| !! | GTAAGTAATTAACATTTTGG+GGG | - | tig0016062:38166-38185 | Msa1357310:intron | 25.0% |
| !! | TAAGTAATTAACATTTTGGG+GGG | - | tig0016062:38167-38186 | Msa1357310:intron | 25.0% |
| ! | TGATATCTTTGTTCAAACTA+TGG | - | tig0016062:38288-38307 | Msa1357310:intron | 25.0% |
| !!! | CACTTTTTATGTTTATCACT+TGG | - | tig0016062:38363-38382 | Msa1357310:intron | 25.0% |
| ! | TATTCCAACAATAACACAAA+GGG | + | tig0016062:38398-38417 | None:intergenic | 25.0% |
| !!! | GTTTGTTGAAGTACTTTTAT+TGG | - | tig0016062:38431-38450 | Msa1357310:intron | 25.0% |
| ! | TTAATTTACCTTATTGTGCA+AGG | + | tig0016062:38562-38581 | None:intergenic | 25.0% |
| !!! | GGCAAGATTATATTACTTTT+TGG | + | tig0016062:38823-38842 | None:intergenic | 25.0% |
| ! | ATGACACAATTAACATAACA+GGG | + | tig0016062:38912-38931 | None:intergenic | 25.0% |
| ! | TATGACACAATTAACATAAC+AGG | + | tig0016062:38913-38932 | None:intergenic | 25.0% |
| ! | AACAACTTTGAATCTTGAAA+AGG | + | tig0016062:39459-39478 | None:intergenic | 25.0% |
| ! | TTATACATTTACCAATTGGA+AGG | + | tig0016062:39532-39551 | None:intergenic | 25.0% |
| !! | AAACTAAAGTGACAATTTTG+TGG | + | tig0016062:39654-39673 | None:intergenic | 25.0% |
| ! | AGTATGAACATATATTCCAA+AGG | + | tig0016062:39737-39756 | None:intergenic | 25.0% |
| ! | TACTCTATATGTTCTTTGTA+TGG | - | tig0016062:39753-39772 | Msa1357310:intron | 25.0% |
| ! | TATATGTTCTTTGTATGGAT+TGG | - | tig0016062:39758-39777 | Msa1357310:intron | 25.0% |
| ! | AAATAATCATCAATGTCATG+TGG | + | tig0016062:39959-39978 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTAATTTCATGAC+AGG | - | tig0016062:40089-40108 | Msa1357310:intron | 25.0% |
| !! | TTTTGCTTTCTTGATAGATT+TGG | - | tig0016062:40133-40152 | Msa1357310:intron | 25.0% |
| !! | TTTTATGTTTGTAGGATTGA+CGG | - | tig0016062:40375-40394 | Msa1357310:exon | 25.0% |
| !! | TTTTATAGTACTCTTGAATG+TGG | - | tig0016062:40549-40568 | Msa1357310:intron | 25.0% |
| !!! | ATTGAAGAGATTATTTTGCA+AGG | + | tig0016062:40849-40868 | None:intergenic | 25.0% |
| ! | CAAAATAATCTCTTCAATGT+TGG | - | tig0016062:40851-40870 | Msa1357310:intron | 25.0% |
| ! | GATTCAAAAAGATATGTGTA+AGG | - | tig0016062:40904-40923 | Msa1357310:intron | 25.0% |
| !! | TTGATATCTATATCAGCTTT+TGG | - | tig0016062:41046-41065 | Msa1357310:five_prime_UTR | 25.0% |
| !! | TGATATCTATATCAGCTTTT+GGG | - | tig0016062:41047-41066 | Msa1357310:five_prime_UTR | 25.0% |
| AAGAAAGATGATTTCATGGA+TGG | + | tig0016062:36344-36363 | None:intergenic | 30.0% | |
| GTAGAAGAAAGATGATTTCA+TGG | + | tig0016062:36348-36367 | None:intergenic | 30.0% | |
| !!! | GATGATGGCTTTATTTTAGT+GGG | + | tig0016062:36406-36425 | None:intergenic | 30.0% |
| !!! | TGATGATGGCTTTATTTTAG+TGG | + | tig0016062:36407-36426 | None:intergenic | 30.0% |
| ! | GATTCATCCATTTTCATCTT+CGG | - | tig0016062:36720-36739 | Msa1357310:intron | 30.0% |
| TCAAATCCCATTTATCTTTC+TGG | - | tig0016062:36791-36810 | Msa1357310:intron | 30.0% | |
| TGCACATGAAAATAGAAACA+TGG | + | tig0016062:36834-36853 | None:intergenic | 30.0% | |
| TTTCATGTGCAATCAGAAAT+TGG | - | tig0016062:36843-36862 | Msa1357310:intron | 30.0% | |
| GCTGATGAATTTCAAGAAAT+AGG | - | tig0016062:36867-36886 | Msa1357310:intron | 30.0% | |
| ATATGAGAAATCAAGCAACA+TGG | - | tig0016062:37091-37110 | Msa1357310:intron | 30.0% | |
| TGTTGTCATTGTCAATATGT+TGG | - | tig0016062:37420-37439 | Msa1357310:intron | 30.0% | |
| ATTGAAATTGCAGTAGCTAT+TGG | - | tig0016062:37488-37507 | Msa1357310:intron | 30.0% | |
| TTGAAATTGCAGTAGCTATT+GGG | - | tig0016062:37489-37508 | Msa1357310:intron | 30.0% | |
| !!! | TCTTGTTGCTTTTTCTATGA+AGG | + | tig0016062:37538-37557 | None:intergenic | 30.0% |
| TAACTCATAATCAAGTTCTG+AGG | - | tig0016062:37702-37721 | Msa1357310:intron | 30.0% | |
| GCTTGACAGATTTACATATT+AGG | - | tig0016062:37892-37911 | Msa1357310:intron | 30.0% | |
| TTCAAAAAGGGCTATGATAA+AGG | - | tig0016062:38014-38033 | Msa1357310:intron | 30.0% | |
| ! | TTAACCCTTTGTGTTATTGT+TGG | - | tig0016062:38391-38410 | Msa1357310:intron | 30.0% |
| CTATTCCAACAATAACACAA+AGG | + | tig0016062:38399-38418 | None:intergenic | 30.0% | |
| ATGATATATGGCTACATGAT+TGG | - | tig0016062:39024-39043 | Msa1357310:intron | 30.0% | |
| ACTACAAGTCAAAATAACAC+AGG | - | tig0016062:39289-39308 | Msa1357310:intron | 30.0% | |
| TCTTGGCTGTATTTGTAAAT+TGG | - | tig0016062:39400-39419 | Msa1357310:intron | 30.0% | |
| TTGAATCTTGAAAAGGAAAG+CGG | + | tig0016062:39452-39471 | None:intergenic | 30.0% | |
| ! | ATAGTGTTGTTGGAAAATGA+TGG | + | tig0016062:39501-39520 | None:intergenic | 30.0% |
| TATTGTTTCAACCTTCCAAT+TGG | - | tig0016062:39518-39537 | Msa1357310:intron | 30.0% | |
| ! | ATTAGAATTTAGGACACCTT+TGG | - | tig0016062:39718-39737 | Msa1357310:intron | 30.0% |
| TAAGCAATGTTGAGAACAAT+TGG | - | tig0016062:39903-39922 | Msa1357310:intron | 30.0% | |
| AAGCAATGTTGAGAACAATT+GGG | - | tig0016062:39904-39923 | Msa1357310:intron | 30.0% | |
| GTTATTTGCATAGAATCACA+AGG | - | tig0016062:40182-40201 | Msa1357310:intron | 30.0% | |
| !!! | GCCTTTTGGTTCTATTTTTA+TGG | - | tig0016062:40229-40248 | Msa1357310:intron | 30.0% |
| GCCATAAAAATAGAACCAAA+AGG | + | tig0016062:40233-40252 | None:intergenic | 30.0% | |
| ! | GACTAAAGTGCTCAATATAA+TGG | - | tig0016062:40317-40336 | Msa1357310:intron | 30.0% |
| ATTGTAGGATTAAGCATCAA+AGG | + | tig0016062:40803-40822 | None:intergenic | 30.0% | |
| AAAGATGATTTCATGGATGG+AGG | + | tig0016062:36341-36360 | None:intergenic | 35.0% | |
| TGAAGAGATGAAGATGATGA+TGG | + | tig0016062:36421-36440 | None:intergenic | 35.0% | |
| !!! | TGAATGAGTTGCTTTTGTAG+AGG | + | tig0016062:36445-36464 | None:intergenic | 35.0% |
| TTTGGATGAAAGAGAGAGAA+AGG | + | tig0016062:36556-36575 | None:intergenic | 35.0% | |
| CTCATTCTTTCATTTAGCGA+CGG | + | tig0016062:36668-36687 | None:intergenic | 35.0% | |
| ! | AAATGCTTTTGGATGTGAGT+TGG | - | tig0016062:37353-37372 | Msa1357310:intron | 35.0% |
| !! | ATAATCAAGTTCTGAGGTCA+TGG | - | tig0016062:37708-37727 | Msa1357310:intron | 35.0% |
| !!! | TACTTTTATTGGGTGTCACT+TGG | - | tig0016062:38442-38461 | Msa1357310:intron | 35.0% |
| !!! | TTGGTTTGTTTTGGGTGTTT+TGG | - | tig0016062:38461-38480 | Msa1357310:intron | 35.0% |
| AGGAATTAGTGAATGATCTC+AGG | - | tig0016062:38529-38548 | Msa1357310:intron | 35.0% | |
| GTCATTATCCTTGCACAATA+AGG | - | tig0016062:38551-38570 | Msa1357310:intron | 35.0% | |
| TTCTTAGATGTATAGTGCAG+TGG | - | tig0016062:38599-38618 | Msa1357310:intron | 35.0% | |
| TGTATAGTGCAGTGGAAATT+TGG | - | tig0016062:38607-38626 | Msa1357310:intron | 35.0% | |
| !!! | AAAGTAGCTTGCTTTTCTCT+TGG | - | tig0016062:38648-38667 | Msa1357310:intron | 35.0% |
| ACACAATTAACATAACAGGG+AGG | + | tig0016062:38909-38928 | None:intergenic | 35.0% | |
| !!! | ACTTTTTGAAACCATGTCCA+AGG | - | tig0016062:39249-39268 | Msa1357310:intron | 35.0% |
| !!! | CTTTTTGAAACCATGTCCAA+GGG | - | tig0016062:39250-39269 | Msa1357310:intron | 35.0% |
| ! | ACAAAAGTCATTGAAAGTGC+TGG | + | tig0016062:39332-39351 | None:intergenic | 35.0% |
| TCTGCAGAAGAAATCAGAAT+AGG | - | tig0016062:39361-39380 | Msa1357310:intron | 35.0% | |
| CTGCAGAAGAAATCAGAATA+GGG | - | tig0016062:39362-39381 | Msa1357310:intron | 35.0% | |
| TGAATCTTGAAAAGGAAAGC+GGG | + | tig0016062:39451-39470 | None:intergenic | 35.0% | |
| AGATTCAAAGTTGTTCCGAA+AGG | - | tig0016062:39464-39483 | Msa1357310:intron | 35.0% | |
| ATGGATAGTTAGATGCCTTT+CGG | + | tig0016062:39482-39501 | None:intergenic | 35.0% | |
| GGTTGAAACAATAGTGTTGT+TGG | + | tig0016062:39511-39530 | None:intergenic | 35.0% | |
| CTTCATTCAACAGAATTGCA+AGG | - | tig0016062:40064-40083 | Msa1357310:intron | 35.0% | |
| !!! | TTGGTTCTATTTTTATGGCG+AGG | - | tig0016062:40234-40253 | Msa1357310:intron | 35.0% |
| AACCTGATAGCAATTAGCAA+AGG | + | tig0016062:40280-40299 | None:intergenic | 35.0% | |
| ! | TCAGGTTCTGATCTTAAGTT+AGG | - | tig0016062:40293-40312 | Msa1357310:intron | 35.0% |
| ! | CAGGTTCTGATCTTAAGTTA+GGG | - | tig0016062:40294-40313 | Msa1357310:intron | 35.0% |
| ! | AGGTTCTGATCTTAAGTTAG+GGG | - | tig0016062:40295-40314 | Msa1357310:intron | 35.0% |
| GACATGAGAAAACCAAACAT+TGG | + | tig0016062:40440-40459 | None:intergenic | 35.0% | |
| AAATGACCAATGAAGTTGTG+TGG | - | tig0016062:40521-40540 | Msa1357310:intron | 35.0% | |
| TGATTTCATGGATGGAGGTT+GGG | + | tig0016062:36336-36355 | None:intergenic | 40.0% | |
| ATGATTTCATGGATGGAGGT+TGG | + | tig0016062:36337-36356 | None:intergenic | 40.0% | |
| !!! | GATGGCTTTATTTTAGTGGG+AGG | + | tig0016062:36403-36422 | None:intergenic | 40.0% |
| AGATAGCAACACACACTTCT+GGG | - | tig0016062:36686-36705 | Msa1357310:intron | 40.0% | |
| AATCAAGCAACATGGTTGCA+AGG | - | tig0016062:37099-37118 | Msa1357310:intron | 40.0% | |
| !!! | GGTGTCACTTGGTTTGTTTT+GGG | - | tig0016062:38453-38472 | Msa1357310:intron | 40.0% |
| TTGGGCTAAACATGCAATCA+TGG | - | tig0016062:38505-38524 | Msa1357310:intron | 40.0% | |
| ATAACAGGGAGGAAAATAGC+GGG | + | tig0016062:38898-38917 | None:intergenic | 40.0% | |
| CATAACAGGGAGGAAAATAG+CGG | + | tig0016062:38899-38918 | None:intergenic | 40.0% | |
| TGCAATCAGATGACATCACT+TGG | - | tig0016062:39219-39238 | Msa1357310:intron | 40.0% | |
| CTGATTTCTTCTGCAGAAAG+AGG | + | tig0016062:39358-39377 | None:intergenic | 40.0% | |
| GGACATTACTCACTACATCT+TGG | - | tig0016062:39383-39402 | Msa1357310:intron | 40.0% | |
| AATGTTGAGAACAATTGGGC+AGG | - | tig0016062:39908-39927 | Msa1357310:intron | 40.0% | |
| TAGCAATTAGCAAAGGCAAG+TGG | + | tig0016062:40273-40292 | None:intergenic | 40.0% | |
| TGCCTTTGCTAATTGCTATC+AGG | - | tig0016062:40275-40294 | Msa1357310:intron | 40.0% | |
| TTCACTCGCCTTTGCTAATA+AGG | - | tig0016062:40348-40367 | Msa1357310:intron | 40.0% | |
| TTGTAGGATTGACGGTTTAG+CGG | - | tig0016062:40383-40402 | Msa1357310:intron | 40.0% | |
| TGTAGGTCAGTACCAATGTT+TGG | - | tig0016062:40425-40444 | Msa1357310:intron | 40.0% | |
| ATTCGAAGAGACACACACAT+TGG | + | tig0016062:40479-40498 | None:intergenic | 40.0% | |
| ACTCAACCACACAACTTCAT+TGG | + | tig0016062:40530-40549 | None:intergenic | 40.0% | |
| TATGTGTAAGGGACGATATG+AGG | - | tig0016062:40916-40935 | Msa1357310:intron | 40.0% | |
| ACAAGCAGTGCAAATAACAG+GGG | + | tig0016062:40962-40981 | None:intergenic | 40.0% | |
| CACAAGCAGTGCAAATAACA+GGG | + | tig0016062:40963-40982 | None:intergenic | 40.0% | |
| ACACAAGCAGTGCAAATAAC+AGG | + | tig0016062:40964-40983 | None:intergenic | 40.0% | |
| ! | TGTTATTTGCACTGCTTGTG+TGG | - | tig0016062:40963-40982 | Msa1357310:five_prime_UTR | 40.0% |
| CTATTCCAAAGATGAGGTCT+TGG | - | tig0016062:41007-41026 | Msa1357310:five_prime_UTR | 40.0% | |
| GATTTCATGGATGGAGGTTG+GGG | + | tig0016062:36335-36354 | None:intergenic | 45.0% | |
| !!! | GGCTTTATTTTAGTGGGAGG+AGG | + | tig0016062:36400-36419 | None:intergenic | 45.0% |
| AATTTCGACGTGGTGGTCAA+CGG | + | tig0016062:36502-36521 | None:intergenic | 45.0% | |
| GAGATAGCAACACACACTTC+TGG | - | tig0016062:36685-36704 | Msa1357310:intron | 45.0% | |
| GATAGCAACACACACTTCTG+GGG | - | tig0016062:36687-36706 | Msa1357310:intron | 45.0% | |
| !! | CATTTTGGGGGGTCAAATTC+AGG | - | tig0016062:38178-38197 | Msa1357310:intron | 45.0% |
| !!! | GGGTGTCACTTGGTTTGTTT+TGG | - | tig0016062:38452-38471 | Msa1357310:intron | 45.0% |
| GCTAAACATGCAATCATGGC+AGG | - | tig0016062:38509-38528 | Msa1357310:intron | 45.0% | |
| !! | GTTCTATCCATTGACTCCCT+TGG | + | tig0016062:39269-39288 | None:intergenic | 45.0% |
| GTTCCTCCTGTGAAGATTGT+TGG | - | tig0016062:40155-40174 | Msa1357310:intron | 45.0% | |
| ACTGCTCCAACAATCTTCAC+AGG | + | tig0016062:40164-40183 | None:intergenic | 45.0% | |
| ! | AGCGTTGTGTTTGTGCCTTT+TGG | - | tig0016062:40215-40234 | Msa1357310:intron | 45.0% |
| AGGGACGATATGAGGATTAC+CGG | - | tig0016062:40924-40943 | Msa1357310:intron | 45.0% | |
| ATTTGCACTGCTTGTGTGGT+TGG | - | tig0016062:40967-40986 | Msa1357310:five_prime_UTR | 45.0% | |
| GGGAAGCTATTCCAAAGATG+AGG | - | tig0016062:41001-41020 | Msa1357310:five_prime_UTR | 45.0% | |
| ACTCTCCAAGACCTCATCTT+TGG | + | tig0016062:41015-41034 | None:intergenic | 45.0% | |
| !! | ATATAAAAGAATAAAAAAAT+AGG | + | tig0016062:40749-40768 | None:intergenic | 5.0% |
| !! | GATTAATTAAAATAAAATAA+AGG | + | tig0016062:41083-41102 | None:intergenic | 5.0% |
| TGAGGAAGAGAGAGAGAGAG+TGG | + | tig0016062:36296-36315 | None:intergenic | 50.0% | |
| ! | GGTTTACGTGAGAGAGTGTG+AGG | + | tig0016062:36314-36333 | None:intergenic | 50.0% |
| GAGAGAGAATTTCGACGTGG+TGG | + | tig0016062:36509-36528 | None:intergenic | 50.0% | |
| GTGGAGAGAGAATTTCGACG+TGG | + | tig0016062:36512-36531 | None:intergenic | 50.0% | |
| GAACTGATGATACCTCAGCG+CGG | + | tig0016062:36534-36553 | None:intergenic | 50.0% | |
| ACCATGTCCAAGGGAGTCAA+TGG | - | tig0016062:39259-39278 | Msa1357310:intron | 50.0% | |
| !! | TCCATTGACTCCCTTGGACA+TGG | + | tig0016062:39263-39282 | None:intergenic | 50.0% |
| GCTCCAACAATCTTCACAGG+AGG | + | tig0016062:40161-40180 | None:intergenic | 50.0% | |
| TGTTGGTCAGCTTCAGCAGA+AGG | - | tig0016062:40868-40887 | Msa1357310:intron | 50.0% | |
| GTTGGTCAGCTTCAGCAGAA+GGG | - | tig0016062:40869-40888 | Msa1357310:intron | 50.0% | |
| ATGAGGATTACCGGTGCTCA+AGG | - | tig0016062:40933-40952 | Msa1357310:intron | 50.0% | |
| CTGCTTGTGTGGTTGGAAAG+CGG | - | tig0016062:40974-40993 | Msa1357310:five_prime_UTR | 50.0% | |
| ! | AGCAACACACACTTCTGGGG+AGG | - | tig0016062:36690-36709 | Msa1357310:intron | 55.0% |
| ! | AACACACACTTCTGGGGAGG+AGG | - | tig0016062:36693-36712 | Msa1357310:intron | 55.0% |
| ACAGGGGAATCCTTGAGCAC+CGG | + | tig0016062:40946-40965 | None:intergenic | 55.0% | |
| TGTGGTTGGAAAGCGGCACA+GGG | - | tig0016062:40981-41000 | Msa1357310:five_prime_UTR | 55.0% | |
| TTCGACGTGGTGGTCAACGG+TGG | + | tig0016062:36499-36518 | None:intergenic | 60.0% | |
| ATTCTCTCTCCACCGCGCTG+AGG | - | tig0016062:36519-36538 | Msa1357310:three_prime_UTR | 60.0% | |
| CTGATGATACCTCAGCGCGG+TGG | + | tig0016062:36531-36550 | None:intergenic | 60.0% | |
| GTGTGGTTGGAAAGCGGCAC+AGG | - | tig0016062:40980-40999 | Msa1357310:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016062 | gene | 36286 | 41191 | 36286 | ID=Msa1357310;Name=Msa1357310 |
| tig0016062 | mRNA | 36286 | 41191 | 36286 | ID=Msa1357310-mRNA-1;Parent=Msa1357310;Name=Msa1357310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=366|0.75|0.77|0.88|0.25|0.22|9|443|72 |
| tig0016062 | exon | 36286 | 36676 | 36286 | ID=Msa1357310-mRNA-1:exon:10334;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 37023 | 37088 | 37023 | ID=Msa1357310-mRNA-1:exon:10333;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 37274 | 37366 | 37274 | ID=Msa1357310-mRNA-1:exon:10332;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 37548 | 37570 | 37548 | ID=Msa1357310-mRNA-1:exon:10331;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 39916 | 39976 | 39916 | ID=Msa1357310-mRNA-1:exon:10330;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 40357 | 40400 | 40357 | ID=Msa1357310-mRNA-1:exon:10329;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 40589 | 40618 | 40589 | ID=Msa1357310-mRNA-1:exon:10328;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 40763 | 40827 | 40763 | ID=Msa1357310-mRNA-1:exon:10327;Parent=Msa1357310-mRNA-1 |
| tig0016062 | exon | 40937 | 41191 | 40937 | ID=Msa1357310-mRNA-1:exon:10326;Parent=Msa1357310-mRNA-1 |
| tig0016062 | five_prime_UTR | 40937 | 41191 | 40937 | ID=Msa1357310-mRNA-1:five_prime_utr;Parent=Msa1357310-mRNA-1 |
| tig0016062 | five_prime_UTR | 40763 | 40827 | 40763 | ID=Msa1357310-mRNA-1:five_prime_utr;Parent=Msa1357310-mRNA-1 |
| tig0016062 | five_prime_UTR | 40589 | 40618 | 40589 | ID=Msa1357310-mRNA-1:five_prime_utr;Parent=Msa1357310-mRNA-1 |
| tig0016062 | five_prime_UTR | 40385 | 40400 | 40385 | ID=Msa1357310-mRNA-1:five_prime_utr;Parent=Msa1357310-mRNA-1 |
| tig0016062 | CDS | 40357 | 40384 | 40357 | ID=Msa1357310-mRNA-1:cds;Parent=Msa1357310-mRNA-1 |
| tig0016062 | CDS | 39916 | 39976 | 39916 | ID=Msa1357310-mRNA-1:cds;Parent=Msa1357310-mRNA-1 |
| tig0016062 | CDS | 37548 | 37570 | 37548 | ID=Msa1357310-mRNA-1:cds;Parent=Msa1357310-mRNA-1 |
| tig0016062 | CDS | 37274 | 37366 | 37274 | ID=Msa1357310-mRNA-1:cds;Parent=Msa1357310-mRNA-1 |
| tig0016062 | CDS | 37075 | 37088 | 37075 | ID=Msa1357310-mRNA-1:cds;Parent=Msa1357310-mRNA-1 |
| tig0016062 | three_prime_UTR | 37023 | 37074 | 37023 | ID=Msa1357310-mRNA-1:three_prime_utr;Parent=Msa1357310-mRNA-1 |
| tig0016062 | three_prime_UTR | 36286 | 36676 | 36286 | ID=Msa1357310-mRNA-1:three_prime_utr;Parent=Msa1357310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
