AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078810 MtrunA17_Chr7g0263581 97.877 471 10 0 1 471 1 471 0.0 963
Msa1078810 MtrunA17_Chr4g0030191 54.273 433 135 13 1 408 1 395 1.82e-116 350
Msa1078810 MtrunA17_Chr2g0325911 50.808 433 139 16 1 408 1 384 1.91e-103 316
Msa1078810 MtrunA17_Chr5g0401891 83.770 191 31 0 124 314 137 327 2.99e-97 302
Msa1078810 MtrunA17_Chr4g0053181 83.333 192 31 1 124 314 161 352 4.98e-95 296
Msa1078810 MtrunA17_Chr7g0216601 50.000 202 87 3 136 323 65 266 4.69e-55 188
Msa1078810 MtrunA17_Chr1g0170761 43.161 329 141 13 1 315 3 299 1.26e-54 187
Msa1078810 MtrunA17_Chr4g0072291 49.744 195 86 4 110 293 134 327 1.15e-51 182
Msa1078810 MtrunA17_Chr3g0126151 80.851 94 18 0 177 270 47 140 3.60e-50 167
Msa1078810 MtrunA17_Chr4g0054351 52.047 171 71 3 136 295 310 480 7.49e-50 180
Msa1078810 MtrunA17_Chr7g0249621 41.045 268 119 7 82 330 209 456 2.23e-49 179
Msa1078810 MtrunA17_Chr4g0032631 52.071 169 70 3 136 293 163 331 3.30e-49 176
Msa1078810 MtrunA17_Chr4g0032631 44.156 77 41 1 126 200 255 331 5.69e-12 67.8
Msa1078810 MtrunA17_Chr4g0032631 42.857 91 43 2 215 296 150 240 7.48e-11 64.3
Msa1078810 MtrunA17_Chr5g0400871 51.462 171 72 3 136 295 249 419 6.58e-49 176
Msa1078810 MtrunA17_Chr5g0400871 40.000 95 48 2 211 296 232 326 8.21e-11 64.3
Msa1078810 MtrunA17_Chr4g0002011 49.770 217 84 6 130 321 30 246 7.50e-49 170
Msa1078810 MtrunA17_Chr8g0355191 44.545 220 105 5 113 323 31 242 2.70e-48 171
Msa1078810 MtrunA17_Chr3g0135161 49.180 183 84 4 122 295 295 477 5.32e-47 172
Msa1078810 MtrunA17_Chr8g0343851 51.807 166 72 3 136 293 248 413 7.12e-47 171
Msa1078810 MtrunA17_Chr4g0073521 46.809 188 92 3 113 292 24 211 1.72e-46 164
Msa1078810 MtrunA17_Chr1g0152161 50.595 168 75 3 136 295 312 479 2.97e-46 170
Msa1078810 MtrunA17_Chr6g0452911 48.619 181 75 4 140 302 65 245 1.07e-45 163
Msa1078810 MtrunA17_Chr2g0328971 49.704 169 71 4 136 293 167 332 1.33e-44 163
Msa1078810 MtrunA17_Chr2g0328971 44.156 77 41 1 126 200 256 332 1.05e-11 67.0
Msa1078810 MtrunA17_Chr8g0355181 47.236 199 93 4 119 307 37 233 1.45e-44 160
Msa1078810 MtrunA17_Chr5g0412151 51.053 190 82 3 117 295 205 394 2.84e-44 162
Msa1078810 MtrunA17_Chr8g0367311 56.716 134 57 1 163 295 19 152 8.17e-43 152
Msa1078810 MtrunA17_Chr8g0367311 36.449 107 63 3 102 203 48 154 1.74e-11 64.3
Msa1078810 MtrunA17_Chr8g0362541 46.341 205 87 4 111 292 43 247 1.73e-38 144
Msa1078810 MtrunA17_Chr7g0257361 48.571 140 55 3 136 262 57 192 1.58e-25 108
Msa1078810 MtrunA17_Chr2g0305821 44.697 132 64 3 116 238 25 156 2.71e-20 87.8
Msa1078810 MtrunA17_Chr2g0305831 50.000 66 33 0 238 303 5 70 3.45e-13 68.6
Msa1078810 MtrunA17_Chr8g0375031 53.125 64 27 2 139 200 124 186 7.78e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078810 AT2G28550.3 53.211 436 153 15 1 408 1 413 1.73e-108 330
Msa1078810 AT4G36920.1 66.406 256 76 3 117 369 110 358 1.67e-96 298
Msa1078810 AT4G36920.2 66.406 256 76 3 117 369 110 358 1.67e-96 298
Msa1078810 AT2G28550.1 50.229 436 151 16 1 408 1 398 4.41e-94 292
Msa1078810 AT5G67180.2 78.947 190 40 0 125 314 82 271 2.14e-90 277
Msa1078810 AT5G67180.1 78.947 190 40 0 125 314 82 271 3.50e-90 279
Msa1078810 AT5G67180.3 84.795 171 26 0 125 295 82 252 2.12e-88 271
Msa1078810 AT2G28550.4 57.827 313 99 8 1 289 1 304 4.23e-86 268
Msa1078810 AT2G28550.2 59.928 277 79 7 1 254 1 268 7.38e-76 239
Msa1078810 AT2G28550.6 59.928 277 79 7 1 254 1 268 7.38e-76 239
Msa1078810 AT5G67180.4 77.059 170 36 2 125 293 82 249 1.15e-73 233
Msa1078810 AT5G60120.1 38.370 503 218 18 1 455 1 459 1.65e-70 232
Msa1078810 AT5G60120.6 38.632 497 218 18 1 455 1 452 3.31e-70 231
Msa1078810 AT5G60120.4 44.110 365 138 12 1 330 1 334 6.28e-67 220
Msa1078810 AT5G60120.3 44.110 365 138 12 1 330 1 334 6.28e-67 220
Msa1078810 AT5G60120.5 44.110 365 138 12 1 330 1 334 6.28e-67 220
Msa1078810 AT5G60120.2 37.333 525 215 20 1 455 1 481 9.44e-67 223
Msa1078810 AT2G28550.5 52.713 258 88 9 156 408 4 232 8.38e-64 208
Msa1078810 AT1G72570.1 48.958 192 85 4 115 293 197 388 2.17e-51 179
Msa1078810 AT4G37750.1 43.460 237 107 4 114 323 258 494 5.00e-51 182
Msa1078810 AT5G57390.2 48.469 196 89 4 109 293 56 250 1.24e-50 178
Msa1078810 AT1G51190.1 44.206 233 103 6 72 293 139 355 2.12e-50 180
Msa1078810 AT5G57390.1 48.469 196 89 4 109 293 174 368 4.86e-50 179
Msa1078810 AT5G17430.2 48.438 192 87 4 112 292 122 312 1.22e-49 177
Msa1078810 AT5G17430.1 48.438 192 87 4 112 292 184 374 2.09e-49 178
Msa1078810 AT2G39250.1 39.701 335 123 11 1 326 1 265 3.14e-49 171
Msa1078810 AT3G20840.1 50.888 169 72 3 136 293 178 346 7.45e-49 176
Msa1078810 AT3G20840.1 44.156 77 41 1 126 200 270 346 8.78e-12 67.8
Msa1078810 AT2G39250.2 46.473 241 82 6 1 233 1 202 3.70e-48 166
Msa1078810 AT3G54320.3 46.829 205 84 4 120 299 32 236 2.26e-44 161
Msa1078810 AT5G65510.4 54.386 171 67 3 136 295 170 340 2.66e-44 161
Msa1078810 AT3G54320.1 46.602 206 85 4 120 300 32 237 2.87e-44 161
Msa1078810 AT5G65510.2 54.386 171 67 3 136 295 228 398 3.84e-44 162
Msa1078810 AT5G65510.1 54.386 171 67 3 136 295 228 398 3.84e-44 162
Msa1078810 AT3G54990.2 66.443 149 39 2 97 245 91 228 8.17e-44 154
Msa1078810 AT3G54990.1 59.016 183 50 3 97 279 91 248 1.30e-43 157
Msa1078810 AT5G10510.7 52.047 171 71 3 136 295 227 397 3.27e-42 157
Msa1078810 AT5G10510.5 52.047 171 71 3 136 295 227 397 3.27e-42 157
Msa1078810 AT5G10510.6 52.047 171 71 3 136 295 265 435 4.00e-42 158
Msa1078810 AT5G10510.4 52.047 171 71 3 136 295 265 435 4.00e-42 158
Msa1078810 AT5G10510.1 52.047 171 71 3 136 295 250 420 4.36e-42 157
Msa1078810 AT5G65510.3 53.191 141 55 3 136 265 170 310 2.53e-40 147
Msa1078810 AT1G79700.2 53.448 174 70 2 130 292 43 216 4.35e-40 147
Msa1078810 AT1G16060.1 50.000 188 83 2 116 292 35 222 3.54e-39 145
Msa1078810 AT5G10510.2 50.000 168 76 3 136 295 227 394 4.33e-38 146
Msa1078810 AT5G10510.3 45.026 191 74 4 136 295 265 455 1.90e-35 139
Msa1078810 AT1G79700.1 50.575 174 65 3 130 292 43 206 8.44e-33 127
Msa1078810 AT3G54320.4 50.725 138 67 1 163 299 33 170 1.49e-31 124
Msa1078810 AT3G54320.5 50.725 138 67 1 163 299 33 170 1.49e-31 124
Msa1078810 AT1G79700.3 54.412 136 61 1 158 292 5 140 1.13e-28 113
Msa1078810 AT1G16060.3 54.412 136 61 1 158 292 17 152 6.88e-28 112
Msa1078810 AT1G79700.4 54.264 129 58 1 165 292 6 134 1.46e-26 107
Msa1078810 AT2G41710.1 48.855 131 53 2 136 256 67 193 5.11e-25 107
Msa1078810 AT2G41710.4 48.855 131 53 2 136 256 67 193 6.99e-25 107
Msa1078810 AT2G41710.2 47.059 136 53 3 136 256 67 198 7.41e-23 100
Msa1078810 AT2G41710.3 46.281 121 51 2 146 256 112 228 3.51e-20 93.2
Msa1078810 AT3G54320.2 54.167 96 43 1 206 300 1 96 3.46e-19 88.2
Msa1078810 AT1G16060.2 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa1078810 AT1G16060.4 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa1078810 AT1G16060.6 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa1078810 AT1G16060.5 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa1078810 AT3G25730.1 38.947 95 54 2 128 222 53 143 2.56e-12 68.2
Msa1078810 AT1G68840.2 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
Msa1078810 AT1G68840.1 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
Msa1078810 AT2G47520.1 44.578 83 43 2 122 202 32 113 1.57e-11 63.2

Find 166 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGCTGCCATGCCCAATT+TGG 0.214682 7_2:-77812922 None:intergenic
CTATTCCTCTTCTTACCTTA+TGG 0.218113 7_2:-77810283 None:intergenic
ATCATTCCCGATTCGTTTGC+TGG 0.249662 7_2:-77810730 None:intergenic
CTCAATGTTCAGTCATCTTA+TGG 0.249805 7_2:+77812665 Msa1078810:CDS
GTTTGCAAGTTCAGCGTAAC+TGG 0.251291 7_2:+77812462 Msa1078810:CDS
AATCTGCTCCCGTTCCAAAT+TGG 0.265423 7_2:+77812908 Msa1078810:CDS
CTCCAAAGTCCATATAATAA+TGG 0.282974 7_2:+77812940 Msa1078810:CDS
GACGTTGGGAATCGCATATT+TGG 0.285512 7_2:+77810923 Msa1078810:CDS
AGTCTTTGTATCCAAGGTTT+AGG 0.309744 7_2:+77813186 Msa1078810:three_prime_UTR
AAAGTTGACCCATTATTATA+TGG 0.312812 7_2:-77812949 None:intergenic
GCTCGTATGGGACAGTTTCT+TGG 0.324940 7_2:+77811723 Msa1078810:CDS
GGAAGCGTTGTTGTTGAGTA+TGG 0.328168 7_2:-77810629 None:intergenic
ACGATTCAGTTATGAAGATT+TGG 0.335301 7_2:-77810433 None:intergenic
ATATAACCCACAAATAATAT+TGG 0.339629 7_2:-77813520 None:intergenic
ATCTGCTCCCGTTCCAAATT+GGG 0.340346 7_2:+77812909 Msa1078810:CDS
CGTTGATAGTTTGAGGACTC+TGG 0.357542 7_2:+77812632 Msa1078810:intron
AAGAAAATAGGAATATTTAA+AGG 0.373877 7_2:-77813286 None:intergenic
ACCCATTATTATATGGACTT+TGG 0.377342 7_2:-77812942 None:intergenic
TTATGTAGGTATATATATCT+TGG 0.380122 7_2:+77811885 Msa1078810:intron
TTCTCTGCTGCAGCATCATC+AGG 0.380972 7_2:+77812985 Msa1078810:CDS
CTGAGCATCAACCTCCAATC+TGG 0.386362 7_2:+77812702 Msa1078810:CDS
AAAGTAGGAATTTAATTGCT+TGG 0.388624 7_2:+77813237 Msa1078810:three_prime_UTR
ACCATTACACTCTTATCAAC+AGG 0.390876 7_2:-77812494 None:intergenic
GTTACTTTCTACCGGAGAAC+TGG 0.391369 7_2:+77810901 Msa1078810:CDS
TCCAAAGTCCATATAATAAT+GGG 0.393361 7_2:+77812941 Msa1078810:CDS
TTCTTCACCGGCTGAGGTCG+TGG 0.400221 7_2:-77810835 None:intergenic
GATGCTGCAGCAGAGAAATT+AGG 0.402479 7_2:-77812979 None:intergenic
TAATTACTTTCCCGTGTGTA+AGG 0.413461 7_2:+77812733 Msa1078810:CDS
CTCGTATGGGACAGTTTCTT+GGG 0.413776 7_2:+77811724 Msa1078810:CDS
TATGTAGGTATATATATCTT+GGG 0.414146 7_2:+77811886 Msa1078810:intron
AATATGATCATCAAACTTGT+AGG 0.417027 7_2:+77813209 Msa1078810:three_prime_UTR
TGCCATGCCCAATTTGGAAC+GGG 0.426003 7_2:-77812916 None:intergenic
GAATTGTAGCTTTATACTCT+AGG 0.434066 7_2:-77813144 None:intergenic
ACTGAAAATATTTGAGATGA+TGG 0.440420 7_2:+77813434 Msa1078810:three_prime_UTR
GGGTGGAGGTATGTTATGTT+TGG 0.445569 7_2:-77813048 None:intergenic
AGTTTACCATGCCTTGCGGC+AGG 0.447162 7_2:-77813325 None:intergenic
ATGATAACAAAGGAAGGAAA+TGG 0.447543 7_2:-77813389 None:intergenic
ATTTGAACATCAGAGTTAGA+AGG 0.449742 7_2:-77812413 None:intergenic
TTAAATTCCAATATTATTTG+TGG 0.449904 7_2:+77813513 Msa1078810:three_prime_UTR
TAAATTCCAATATTATTTGT+GGG 0.457494 7_2:+77813514 Msa1078810:three_prime_UTR
GCCGGTGAAGAAGAGTCGTC+GGG 0.459593 7_2:+77810846 Msa1078810:CDS
TGGACGATGGGAAGCTCGTA+TGG 0.459668 7_2:+77811710 Msa1078810:CDS
ATGATCATATTCCTAAACCT+TGG 0.459978 7_2:-77813197 None:intergenic
CCTGCAGTAGAAAGAGGGTA+TGG 0.464065 7_2:-77813103 None:intergenic
TACAACAGCTTCGCCGGCGC+CGG 0.464183 7_2:-77810689 None:intergenic
GCAGAATCTTGATCTGAACT+TGG 0.465184 7_2:+77812379 Msa1078810:CDS
CTATCCGCAGCTGTTGTTGA+AGG 0.465186 7_2:-77813012 None:intergenic
GGTAAGAAGAGGAATAGAAA+AGG 0.466484 7_2:+77810289 Msa1078810:five_prime_UTR
AAGAGCAATAGAGAATAGGA+TGG 0.477231 7_2:+77812885 Msa1078810:CDS
ACTCTCCTCCGTCGTTCAGA+TGG 0.481608 7_2:+77810513 Msa1078810:CDS
CTACCGGAGAACTGGACGTT+GGG 0.483697 7_2:+77810909 Msa1078810:CDS
AGGAAAGAGCAATAGAGAAT+AGG 0.487980 7_2:+77812881 Msa1078810:intron
CCATACCCTCTTTCTACTGC+AGG 0.495357 7_2:+77813103 Msa1078810:CDS
TTTGAGGCTAGTTCTTATGA+AGG 0.495376 7_2:+77812125 Msa1078810:CDS
ACTGAAGATTCATGCTCTTA+CGG 0.496241 7_2:+77810583 Msa1078810:CDS
TAGTACCATCGTTATCAGCC+TGG 0.496630 7_2:-77812160 None:intergenic
TGCTCTTACGGCGATGCATA+CGG 0.502837 7_2:+77810595 Msa1078810:CDS
TTTATGAGATGATTCTAATG+AGG 0.504275 7_2:+77813363 Msa1078810:three_prime_UTR
ACGTCTAGTCTTTGTATCCA+AGG 0.505412 7_2:+77813180 Msa1078810:three_prime_UTR
TGTCCGTACAACAGCTTCGC+CGG 0.508835 7_2:-77810695 None:intergenic
GTAGAAAGAGGGTATGGGGC+TGG 0.510625 7_2:-77813097 None:intergenic
AATGACATTATATTGCCATA+AGG 0.516921 7_2:+77810268 Msa1078810:five_prime_UTR
ATCGTGGTGTTACTTTCTAC+CGG 0.518398 7_2:+77810893 Msa1078810:CDS
TAATTAGTACCACTCCAGAT+TGG 0.520137 7_2:-77812716 None:intergenic
TGTTGCTCCACGACCTCAGC+CGG 0.520275 7_2:+77810828 Msa1078810:CDS
CGACTCTTCTTCACCGGCTG+AGG 0.520783 7_2:-77810841 None:intergenic
AACATGCACCACAGTGGAAG+TGG 0.520906 7_2:+77812440 Msa1078810:CDS
ATTCCCAACGTCCAGTTCTC+CGG 0.521427 7_2:-77810912 None:intergenic
ATGGGGCTGGAGTTAGTCGC+TGG 0.523340 7_2:-77813084 None:intergenic
TGAAGGAGAGTTAACTTCCC+AGG 0.523464 7_2:+77812142 Msa1078810:CDS
ATTCAGTTATGAAGATTTGG+AGG 0.523564 7_2:-77810430 None:intergenic
GTCGCTGGAGTAGGAAAATG+AGG 0.525924 7_2:-77813069 None:intergenic
GAGCTTCAACACTCCGGCGC+CGG 0.528911 7_2:+77810676 Msa1078810:CDS
CGGTACGCCACCGTGATGAT+CGG 0.529586 7_2:-77810791 None:intergenic
AGGTTGATGCTCAGATGCTA+TGG 0.530023 7_2:-77812693 None:intergenic
TGTGGAAAACAAGTATACTT+AGG 0.532079 7_2:+77811061 Msa1078810:CDS
CTGCTATAAAATGCAATGGA+AGG 0.535486 7_2:+77812087 Msa1078810:CDS
CTGCAGTAGAAAGAGGGTAT+GGG 0.539113 7_2:-77813102 None:intergenic
CGATCATCACGGTGGCGTAC+CGG 0.539554 7_2:+77810792 Msa1078810:CDS
GTGAAAATGATAACAAAGGA+AGG 0.539785 7_2:-77813395 None:intergenic
CCCCGACGACTCTTCTTCAC+CGG 0.545486 7_2:-77810847 None:intergenic
CTGGAGTTAGTCGCTGGAGT+AGG 0.547085 7_2:-77813078 None:intergenic
AAACTCAAACCTCACAATGT+TGG 0.548139 7_2:+77810459 Msa1078810:exon
GCCGGAGTGTTGAAGCTCAC+CGG 0.549298 7_2:-77810671 None:intergenic
GTTGATAGTTTGAGGACTCT+GGG 0.550553 7_2:+77812633 Msa1078810:intron
GACAGAGTACTGGTTTCTCA+AGG 0.553049 7_2:+77811649 Msa1078810:CDS
GTTTACCATGCCTTGCGGCA+GGG 0.553482 7_2:-77813324 None:intergenic
TCAGCTCCTGCAGTAGAAAG+AGG 0.553716 7_2:-77813109 None:intergenic
TGATTACAGAGCGTATGATA+AGG 0.555672 7_2:+77812064 Msa1078810:intron
CTCCCGTTCCAAATTGGGCA+TGG 0.556092 7_2:+77812914 Msa1078810:CDS
TTATGATGAAGATATAAAGC+AGG 0.557521 7_2:+77811396 Msa1078810:CDS
GCGCCGGCGAAGCTGTTGTA+CGG 0.557964 7_2:+77810692 Msa1078810:CDS
TACTGCGAGCTTCGTGACCT+CGG 0.565421 7_2:-77810871 None:intergenic
GATTGAGATCCAACATTGTG+AGG 0.565610 7_2:-77810468 None:intergenic
AAAATCCCTGCCGCAAGGCA+TGG 0.567862 7_2:+77813319 Msa1078810:three_prime_UTR
ATCTGAACGACGGAGGAGAG+TGG 0.568541 7_2:-77810511 None:intergenic
ATATGATCATCAAACTTGTA+GGG 0.568850 7_2:+77813210 Msa1078810:three_prime_UTR
AACTTGTAGGGTCTAAAAGT+AGG 0.569140 7_2:+77813222 Msa1078810:three_prime_UTR
ATTCTGCGTAGACAGAGTAC+TGG 0.571541 7_2:+77811639 Msa1078810:CDS
GAGTAGGAAAATGAGGGTGG+AGG 0.571882 7_2:-77813062 None:intergenic
AGCCGGTGAAGAAGAGTCGT+CGG 0.574425 7_2:+77810845 Msa1078810:CDS
GTTCAGATGGAAGATTCATC+CGG 0.575771 7_2:+77810526 Msa1078810:CDS
CGAGCTGCGATAAAGTTTCG+TGG 0.575785 7_2:+77811340 Msa1078810:CDS
TGCAGTAGAAAGAGGGTATG+GGG 0.576798 7_2:-77813101 None:intergenic
TATCCGCAGCTGTTGTTGAA+GGG 0.577107 7_2:-77813011 None:intergenic
TGCTATAAAATGCAATGGAA+GGG 0.577688 7_2:+77812088 Msa1078810:CDS
CGCCTTCTGAGAGTAGAGGA+TGG 0.578820 7_2:+77810755 Msa1078810:CDS
GTCGACAACGGTACTATCTC+CGG 0.580552 7_2:+77810652 Msa1078810:CDS
TTACCTTGCCGCAGCATGCG+CGG 0.580853 7_2:-77811209 None:intergenic
TTCAGTTATGAAGATTTGGA+GGG 0.581412 7_2:-77810429 None:intergenic
TCTACCGGAGAACTGGACGT+TGG 0.583316 7_2:+77810908 Msa1078810:CDS
ATACCGCGCATGCTGCGGCA+AGG 0.583419 7_2:+77811206 Msa1078810:CDS
GCAACAACAACAGTCTGCTC+CGG 0.583622 7_2:-77810811 None:intergenic
CAGAATCTTGATCTGAACTT+GGG 0.584312 7_2:+77812380 Msa1078810:CDS
AAGGCTGCTATAAAATGCAA+TGG 0.584344 7_2:+77812083 Msa1078810:CDS
TTAGTACCACTCCAGATTGG+AGG 0.585536 7_2:-77812713 None:intergenic
GAATGAAAGATAGAGAGAGA+AGG 0.588114 7_2:-77810375 None:intergenic
GACGGAGGAATCAAAGCTAC+CGG 0.588222 7_2:-77810545 None:intergenic
TTTGCAAGTTCAGCGTAACT+GGG 0.588454 7_2:+77812463 Msa1078810:CDS
TCTGCATAAATGTGGACGAT+GGG 0.589018 7_2:+77811698 Msa1078810:CDS
AGTACCATCGTTATCAGCCT+GGG 0.589962 7_2:-77812159 None:intergenic
AGAAGAGTCGTCGGGGACCG+AGG 0.591121 7_2:+77810854 Msa1078810:CDS
ATCCATCCTCTACTCTCAGA+AGG 0.594152 7_2:-77810757 None:intergenic
CTGCCATGCCCAATTTGGAA+CGG 0.595613 7_2:-77812917 None:intergenic
GACGGAGGAGAGTGGAAGAG+AGG 0.597615 7_2:-77810503 None:intergenic
ATAGCGAGCTAGATGCTGCA+AGG 0.598807 7_2:+77811916 Msa1078810:CDS
ACAGAGTACTGGTTTCTCAA+GGG 0.599902 7_2:+77811650 Msa1078810:CDS
ATTTGATACCGCGCATGCTG+CGG 0.600999 7_2:+77811201 Msa1078810:CDS
CAGAGTACTGGTTTCTCAAG+GGG 0.605158 7_2:+77811651 Msa1078810:CDS
AAAGTTTCGTGGCGTCGATG+CGG 0.606313 7_2:+77811351 Msa1078810:CDS
TATTGCCATAAGGTAAGAAG+AGG 0.608135 7_2:+77810278 Msa1078810:five_prime_UTR
GGACGATGGGAAGCTCGTAT+GGG 0.611195 7_2:+77811711 Msa1078810:CDS
CAGCTCCTGCAGTAGAAAGA+GGG 0.613397 7_2:-77813108 None:intergenic
ATTAGTATTCACCTTACACA+CGG 0.613966 7_2:-77812744 None:intergenic
TGAACATCAGAGTTAGAAGG+AGG 0.614498 7_2:-77812410 None:intergenic
GCCTGTTGATAAGAGTGTAA+TGG 0.619307 7_2:+77812493 Msa1078810:CDS
AATTTCTCGTCCGATCATCA+CGG 0.619679 7_2:+77810781 Msa1078810:CDS
AACAACGCTTCCGTCGACAA+CGG 0.620133 7_2:+77810640 Msa1078810:CDS
CTAGAGTTTACCATGCCTTG+CGG 0.621770 7_2:-77813329 None:intergenic
GGAGTTACTCTGCATAAATG+TGG 0.624873 7_2:+77811690 Msa1078810:CDS
CTCTGCATAAATGTGGACGA+TGG 0.629073 7_2:+77811697 Msa1078810:CDS
GAGAGTGAAAATGATAACAA+AGG 0.632471 7_2:-77813399 None:intergenic
ATCTCGCCTTCTGAGAGTAG+AGG 0.632485 7_2:+77810751 Msa1078810:CDS
TCCGGTGAGCTTCAACACTC+CGG 0.632556 7_2:+77810670 Msa1078810:CDS
GTAGATGAATAACTTTACAA+AGG 0.633971 7_2:+77811602 Msa1078810:intron
TCACGAAGCTCGCAGTATCG+TGG 0.635514 7_2:+77810877 Msa1078810:CDS
AGAGCATGAATCTTCAGTGT+CGG 0.641138 7_2:-77810578 None:intergenic
GGTTGATGCTCAGATGCTAT+GGG 0.641889 7_2:-77812692 None:intergenic
GTCGGCAGCGTTGACGACGG+AGG 0.642992 7_2:-77810560 None:intergenic
GCTGCAGCAGAGAAATTAGG+TGG 0.656992 7_2:-77812976 None:intergenic
AATATTTGAGATGATGGTGA+AGG 0.660564 7_2:+77813440 Msa1078810:three_prime_UTR
CTGGAGTAGGAAAATGAGGG+TGG 0.661562 7_2:-77813065 None:intergenic
CATCAACCTCCAATCTGGAG+TGG 0.662314 7_2:+77812707 Msa1078810:CDS
GGAGATAGTACCGTTGTCGA+CGG 0.663908 7_2:-77810650 None:intergenic
ATCTTCCATCTGAACGACGG+AGG 0.664445 7_2:-77810518 None:intergenic
AGTGTCGGCAGCGTTGACGA+CGG 0.674336 7_2:-77810563 None:intergenic
TTAGTATTCACCTTACACAC+GGG 0.680796 7_2:-77812743 None:intergenic
AGGGGAAGTTCTAAATACAG+AGG 0.681558 7_2:+77811669 Msa1078810:CDS
ATTCCCTTCAACAACAGCTG+CGG 0.681754 7_2:+77813008 Msa1078810:CDS
TGAATCTTCCATCTGAACGA+CGG 0.693422 7_2:-77810521 None:intergenic
TCGCTGGAGTAGGAAAATGA+GGG 0.701704 7_2:-77813068 None:intergenic
CCGGTGAAGAAGAGTCGTCG+GGG 0.715698 7_2:+77810847 Msa1078810:CDS
TTCTCGTCCGATCATCACGG+TGG 0.718908 7_2:+77810784 Msa1078810:CDS
ACTTCCCAGGCTGATAACGA+TGG 0.728400 7_2:+77812155 Msa1078810:CDS
ATGATGAACATGCACCACAG+TGG 0.729813 7_2:+77812434 Msa1078810:CDS
CTTGCAAACCACTTCCACTG+TGG 0.732557 7_2:-77812448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATCAAATTAAACTAA+AGG - chr7_2:77811765-77811784 None:intergenic 10.0%
!!! TATTTAGTTCTTAATTATAT+TGG + chr7_2:77811833-77811852 Msa1078810:intron 10.0%
!! AAAGATCAAAATCTAAAAAA+AGG - chr7_2:77811160-77811179 None:intergenic 15.0%
!!! TCTTTGAAATTTAATTTTTC+AGG + chr7_2:77811175-77811194 Msa1078810:intron 15.0%
!!! TAAATATTGAATGTTTTTCA+TGG + chr7_2:77811272-77811291 Msa1078810:intron 15.0%
!! TATAATTAAGAACTAAATAC+TGG - chr7_2:77811832-77811851 None:intergenic 15.0%
!!! AAATGCCTAATTAAATATTT+TGG + chr7_2:77811979-77811998 Msa1078810:intron 15.0%
!! ATGATCCAAAATATTTAATT+AGG - chr7_2:77811987-77812006 None:intergenic 15.0%
!! TGATTATAAAACCAAAAAAA+AGG - chr7_2:77812207-77812226 None:intergenic 15.0%
!! AAGAAAATAGGAATATTTAA+AGG - chr7_2:77813289-77813308 None:intergenic 15.0%
!! TTAAATTCCAATATTATTTG+TGG + chr7_2:77813513-77813532 Msa1078810:three_prime_UTR 15.0%
!!! TTGAAATTTAATTTTTCAGG+TGG + chr7_2:77811178-77811197 Msa1078810:intron 20.0%
!!! GTTTTTAATTATATTGGTCT+GGG + chr7_2:77811861-77811880 Msa1078810:intron 20.0%
!! TTATGTAGGTATATATATCT+TGG + chr7_2:77811885-77811904 Msa1078810:intron 20.0%
!! TATGTAGGTATATATATCTT+GGG + chr7_2:77811886-77811905 Msa1078810:intron 20.0%
!! ATTTATCAATCATATATAGC+AGG + chr7_2:77811944-77811963 Msa1078810:intron 20.0%
!! ACTTTAATTGACATACTTTA+AGG - chr7_2:77812291-77812310 None:intergenic 20.0%
!! ATTATTTGTGTTCTATTTAC+AGG + chr7_2:77812861-77812880 Msa1078810:intron 20.0%
! AATGACATTATATTGCCATA+AGG + chr7_2:77810268-77810287 Msa1078810:five_prime_UTR 25.0%
! TTATGATGAAGATATAAAGC+AGG + chr7_2:77811396-77811415 Msa1078810:CDS 25.0%
! GTAGATGAATAACTTTACAA+AGG + chr7_2:77811602-77811621 Msa1078810:intron 25.0%
!!! AATCACAAATCAGTCATTTT+AGG - chr7_2:77811795-77811814 None:intergenic 25.0%
!!! AAGAACTAAATACTGGTTTA+TGG - chr7_2:77811825-77811844 None:intergenic 25.0%
! AGTTCTTAATTATATTGGTC+TGG + chr7_2:77811838-77811857 Msa1078810:intron 25.0%
!! GTTCTTAATTATATTGGTCT+GGG + chr7_2:77811839-77811858 Msa1078810:intron 25.0%
!!! GTCTGGGTTTTTAATTATAT+TGG + chr7_2:77811855-77811874 Msa1078810:intron 25.0%
!!! GGTTTTTAATTATATTGGTC+TGG + chr7_2:77811860-77811879 Msa1078810:intron 25.0%
!! GTCAATTAAAGTATTAAGAC+TGG + chr7_2:77812299-77812318 Msa1078810:intron 25.0%
! TCCAAAGTCCATATAATAAT+GGG + chr7_2:77812941-77812960 Msa1078810:CDS 25.0%
! AAAGTTGACCCATTATTATA+TGG - chr7_2:77812952-77812971 None:intergenic 25.0%
! AATATGATCATCAAACTTGT+AGG + chr7_2:77813209-77813228 Msa1078810:three_prime_UTR 25.0%
! ATATGATCATCAAACTTGTA+GGG + chr7_2:77813210-77813229 Msa1078810:three_prime_UTR 25.0%
! AAAGTAGGAATTTAATTGCT+TGG + chr7_2:77813237-77813256 Msa1078810:three_prime_UTR 25.0%
!!! TTTTTTACACGGAAGAAAAT+AGG - chr7_2:77813301-77813320 None:intergenic 25.0%
! TTTATGAGATGATTCTAATG+AGG + chr7_2:77813363-77813382 Msa1078810:three_prime_UTR 25.0%
!! TATTTTCAGTAAGAAATGCA+TGG - chr7_2:77813424-77813443 None:intergenic 25.0%
!! ACTGAAAATATTTGAGATGA+TGG + chr7_2:77813434-77813453 Msa1078810:three_prime_UTR 25.0%
!! GAAGTGAAGCATTTTCATTT+TGG + chr7_2:77810350-77810369 Msa1078810:five_prime_UTR 30.0%
TTCAGTTATGAAGATTTGGA+GGG - chr7_2:77810432-77810451 None:intergenic 30.0%
ATTCAGTTATGAAGATTTGG+AGG - chr7_2:77810433-77810452 None:intergenic 30.0%
ACGATTCAGTTATGAAGATT+TGG - chr7_2:77810436-77810455 None:intergenic 30.0%
!! TCTGTTTTCGTTTTTCTGTA+GGG + chr7_2:77811036-77811055 Msa1078810:intron 30.0%
TGTGGAAAACAAGTATACTT+AGG + chr7_2:77811061-77811080 Msa1078810:CDS 30.0%
! TACATGTTGTGTTATTGACT+TGG + chr7_2:77812029-77812048 Msa1078810:intron 30.0%
TGCTATAAAATGCAATGGAA+GGG + chr7_2:77812088-77812107 Msa1078810:CDS 30.0%
AGAGTGAGTGATAGTTTATA+TGG - chr7_2:77812254-77812273 None:intergenic 30.0%
ATTTGAACATCAGAGTTAGA+AGG - chr7_2:77812416-77812435 None:intergenic 30.0%
! TTGATAAGAGTGTAATGGTA+AGG + chr7_2:77812498-77812517 Msa1078810:intron 30.0%
ATTAGTATTCACCTTACACA+CGG - chr7_2:77812747-77812766 None:intergenic 30.0%
ATATCTTAAGAATCTTCTGC+TGG + chr7_2:77812826-77812845 Msa1078810:intron 30.0%
CTCCAAAGTCCATATAATAA+TGG + chr7_2:77812940-77812959 Msa1078810:CDS 30.0%
ACCCATTATTATATGGACTT+TGG - chr7_2:77812945-77812964 None:intergenic 30.0%
!! GAATTGTAGCTTTATACTCT+AGG - chr7_2:77813147-77813166 None:intergenic 30.0%
ATGATCATATTCCTAAACCT+TGG - chr7_2:77813200-77813219 None:intergenic 30.0%
ATGATAACAAAGGAAGGAAA+TGG - chr7_2:77813392-77813411 None:intergenic 30.0%
GTGAAAATGATAACAAAGGA+AGG - chr7_2:77813398-77813417 None:intergenic 30.0%
GAGAGTGAAAATGATAACAA+AGG - chr7_2:77813402-77813421 None:intergenic 30.0%
! AATATTTGAGATGATGGTGA+AGG + chr7_2:77813440-77813459 Msa1078810:three_prime_UTR 30.0%
TATTGCCATAAGGTAAGAAG+AGG + chr7_2:77810278-77810297 Msa1078810:five_prime_UTR 35.0%
CTATTCCTCTTCTTACCTTA+TGG - chr7_2:77810286-77810305 None:intergenic 35.0%
GGTAAGAAGAGGAATAGAAA+AGG + chr7_2:77810289-77810308 Msa1078810:five_prime_UTR 35.0%
GAATGAAAGATAGAGAGAGA+AGG - chr7_2:77810378-77810397 None:intergenic 35.0%
AAACTCAAACCTCACAATGT+TGG + chr7_2:77810459-77810478 Msa1078810:exon 35.0%
ACTGAAGATTCATGCTCTTA+CGG + chr7_2:77810583-77810602 Msa1078810:CDS 35.0%
ATTTGGTTAGCATTTCGCAA+TGG + chr7_2:77810940-77810959 Msa1078810:intron 35.0%
ACAGAAAAACGAAAACAGAG+TGG - chr7_2:77811035-77811054 None:intergenic 35.0%
!! CTCTGTTTTCGTTTTTCTGT+AGG + chr7_2:77811035-77811054 Msa1078810:intron 35.0%
! ATATTGGTCTGGGTTTATGT+AGG + chr7_2:77811871-77811890 Msa1078810:intron 35.0%
TGATTACAGAGCGTATGATA+AGG + chr7_2:77812064-77812083 Msa1078810:intron 35.0%
AAGGCTGCTATAAAATGCAA+TGG + chr7_2:77812083-77812102 Msa1078810:CDS 35.0%
CTGCTATAAAATGCAATGGA+AGG + chr7_2:77812087-77812106 Msa1078810:CDS 35.0%
! GGAAGCAGTTACAAATTTTG+AGG + chr7_2:77812109-77812128 Msa1078810:CDS 35.0%
! TTTGAGGCTAGTTCTTATGA+AGG + chr7_2:77812125-77812144 Msa1078810:CDS 35.0%
GTACTACTTATTGACCATTG+AGG + chr7_2:77812177-77812196 Msa1078810:intron 35.0%
AAAAAAAAGGTGAGCCTCAA+TGG - chr7_2:77812194-77812213 None:intergenic 35.0%
!!! ATTGAGGCTCACCTTTTTTT+TGG + chr7_2:77812193-77812212 Msa1078810:intron 35.0%
CAGAATCTTGATCTGAACTT+GGG + chr7_2:77812380-77812399 Msa1078810:CDS 35.0%
ACCATTACACTCTTATCAAC+AGG - chr7_2:77812497-77812516 None:intergenic 35.0%
AATTCATGTGAAAGAGCAGA+GGG - chr7_2:77812570-77812589 None:intergenic 35.0%
!! TAATCTGCGTTGATAGTTTG+AGG + chr7_2:77812625-77812644 Msa1078810:intron 35.0%
CTCAATGTTCAGTCATCTTA+TGG + chr7_2:77812665-77812684 Msa1078810:CDS 35.0%
TAATTAGTACCACTCCAGAT+TGG - chr7_2:77812719-77812738 None:intergenic 35.0%
TAATTACTTTCCCGTGTGTA+AGG + chr7_2:77812733-77812752 Msa1078810:CDS 35.0%
TTAGTATTCACCTTACACAC+GGG - chr7_2:77812746-77812765 None:intergenic 35.0%
AGGAAAGAGCAATAGAGAAT+AGG + chr7_2:77812881-77812900 Msa1078810:intron 35.0%
AAGAGCAATAGAGAATAGGA+TGG + chr7_2:77812885-77812904 Msa1078810:CDS 35.0%
AGTCTTTGTATCCAAGGTTT+AGG + chr7_2:77813186-77813205 Msa1078810:three_prime_UTR 35.0%
AACTTGTAGGGTCTAAAAGT+AGG + chr7_2:77813222-77813241 Msa1078810:three_prime_UTR 35.0%
GATTGAGATCCAACATTGTG+AGG - chr7_2:77810471-77810490 None:intergenic 40.0%
TGAATCTTCCATCTGAACGA+CGG - chr7_2:77810524-77810543 None:intergenic 40.0%
GTTCAGATGGAAGATTCATC+CGG + chr7_2:77810526-77810545 Msa1078810:CDS 40.0%
AGAGCATGAATCTTCAGTGT+CGG - chr7_2:77810581-77810600 None:intergenic 40.0%
!! GCTTTTTCCAGCAAACGAAT+CGG + chr7_2:77810723-77810742 Msa1078810:CDS 40.0%
! CTTTTTCCAGCAAACGAATC+GGG + chr7_2:77810724-77810743 Msa1078810:CDS 40.0%
AATTTCTCGTCCGATCATCA+CGG + chr7_2:77810781-77810800 Msa1078810:CDS 40.0%
!! ATCGTGGTGTTACTTTCTAC+CGG + chr7_2:77810893-77810912 Msa1078810:CDS 40.0%
!! TCGTTTTTCTGTAGGGATTG+TGG + chr7_2:77811043-77811062 Msa1078810:intron 40.0%
!! ACAGAGTACTGGTTTCTCAA+GGG + chr7_2:77811650-77811669 Msa1078810:CDS 40.0%
!! AGGGGAAGTTCTAAATACAG+AGG + chr7_2:77811669-77811688 Msa1078810:CDS 40.0%
GGAGTTACTCTGCATAAATG+TGG + chr7_2:77811690-77811709 Msa1078810:CDS 40.0%
TCTGCATAAATGTGGACGAT+GGG + chr7_2:77811698-77811717 Msa1078810:CDS 40.0%
GCAGAATCTTGATCTGAACT+TGG + chr7_2:77812379-77812398 Msa1078810:CDS 40.0%
TGAACATCAGAGTTAGAAGG+AGG - chr7_2:77812413-77812432 None:intergenic 40.0%
TTTGCAAGTTCAGCGTAACT+GGG + chr7_2:77812463-77812482 Msa1078810:CDS 40.0%
! GCCTGTTGATAAGAGTGTAA+TGG + chr7_2:77812493-77812512 Msa1078810:CDS 40.0%
ATTCATGTGAAAGAGCAGAG+GGG - chr7_2:77812569-77812588 None:intergenic 40.0%
GAATTCATGTGAAAGAGCAG+AGG - chr7_2:77812571-77812590 None:intergenic 40.0%
!! GTTGATAGTTTGAGGACTCT+GGG + chr7_2:77812633-77812652 Msa1078810:intron 40.0%
! ACGTCTAGTCTTTGTATCCA+AGG + chr7_2:77813180-77813199 Msa1078810:three_prime_UTR 40.0%
!!! CGGCAGGGATTTTTTTTACA+CGG - chr7_2:77813312-77813331 None:intergenic 40.0%
TAAAAAAAATCCCTGCCGCA+AGG + chr7_2:77813314-77813333 Msa1078810:three_prime_UTR 40.0%
!! GGAAGCGTTGTTGTTGAGTA+TGG - chr7_2:77810632-77810651 None:intergenic 45.0%
! ATCATTCCCGATTCGTTTGC+TGG - chr7_2:77810733-77810752 None:intergenic 45.0%
ATCCATCCTCTACTCTCAGA+AGG - chr7_2:77810760-77810779 None:intergenic 45.0%
! GTTACTTTCTACCGGAGAAC+TGG + chr7_2:77810901-77810920 Msa1078810:CDS 45.0%
GACGTTGGGAATCGCATATT+TGG + chr7_2:77810923-77810942 Msa1078810:CDS 45.0%
ATTCTGCGTAGACAGAGTAC+TGG + chr7_2:77811639-77811658 Msa1078810:CDS 45.0%
!! GACAGAGTACTGGTTTCTCA+AGG + chr7_2:77811649-77811668 Msa1078810:CDS 45.0%
!! CAGAGTACTGGTTTCTCAAG+GGG + chr7_2:77811651-77811670 Msa1078810:CDS 45.0%
CTCTGCATAAATGTGGACGA+TGG + chr7_2:77811697-77811716 Msa1078810:CDS 45.0%
CTCGTATGGGACAGTTTCTT+GGG + chr7_2:77811724-77811743 Msa1078810:CDS 45.0%
TGAAGGAGAGTTAACTTCCC+AGG + chr7_2:77812142-77812161 Msa1078810:CDS 45.0%
AGTACCATCGTTATCAGCCT+GGG - chr7_2:77812162-77812181 None:intergenic 45.0%
TAGTACCATCGTTATCAGCC+TGG - chr7_2:77812163-77812182 None:intergenic 45.0%
ATGATGAACATGCACCACAG+TGG + chr7_2:77812434-77812453 Msa1078810:CDS 45.0%
GTTTGCAAGTTCAGCGTAAC+TGG + chr7_2:77812462-77812481 Msa1078810:CDS 45.0%
!! CGTTGATAGTTTGAGGACTC+TGG + chr7_2:77812632-77812651 Msa1078810:intron 45.0%
! GGTTGATGCTCAGATGCTAT+GGG - chr7_2:77812695-77812714 None:intergenic 45.0%
!! AGGTTGATGCTCAGATGCTA+TGG - chr7_2:77812696-77812715 None:intergenic 45.0%
TTAGTACCACTCCAGATTGG+AGG - chr7_2:77812716-77812735 None:intergenic 45.0%
AATCTGCTCCCGTTCCAAAT+TGG + chr7_2:77812908-77812927 Msa1078810:CDS 45.0%
ATCTGCTCCCGTTCCAAATT+GGG + chr7_2:77812909-77812928 Msa1078810:CDS 45.0%
GATGCTGCAGCAGAGAAATT+AGG - chr7_2:77812982-77813001 None:intergenic 45.0%
ATTCCCTTCAACAACAGCTG+CGG + chr7_2:77813008-77813027 Msa1078810:CDS 45.0%
TATCCGCAGCTGTTGTTGAA+GGG - chr7_2:77813014-77813033 None:intergenic 45.0%
! GGGTGGAGGTATGTTATGTT+TGG - chr7_2:77813051-77813070 None:intergenic 45.0%
TCGCTGGAGTAGGAAAATGA+GGG - chr7_2:77813071-77813090 None:intergenic 45.0%
! TGCAGTAGAAAGAGGGTATG+GGG - chr7_2:77813104-77813123 None:intergenic 45.0%
! CTGCAGTAGAAAGAGGGTAT+GGG - chr7_2:77813105-77813124 None:intergenic 45.0%
CTAGAGTTTACCATGCCTTG+CGG - chr7_2:77813332-77813351 None:intergenic 45.0%
ATCTTCCATCTGAACGACGG+AGG - chr7_2:77810521-77810540 None:intergenic 50.0%
GACGGAGGAATCAAAGCTAC+CGG - chr7_2:77810548-77810567 None:intergenic 50.0%
TGCTCTTACGGCGATGCATA+CGG + chr7_2:77810595-77810614 Msa1078810:CDS 50.0%
AACAACGCTTCCGTCGACAA+CGG + chr7_2:77810640-77810659 Msa1078810:CDS 50.0%
GGAGATAGTACCGTTGTCGA+CGG - chr7_2:77810653-77810672 None:intergenic 50.0%
GTCGACAACGGTACTATCTC+CGG + chr7_2:77810652-77810671 Msa1078810:CDS 50.0%
! ATCTCGCCTTCTGAGAGTAG+AGG + chr7_2:77810751-77810770 Msa1078810:CDS 50.0%
GCAACAACAACAGTCTGCTC+CGG - chr7_2:77810814-77810833 None:intergenic 50.0%
ATTCCCAACGTCCAGTTCTC+CGG - chr7_2:77810915-77810934 None:intergenic 50.0%
ATTTGATACCGCGCATGCTG+CGG + chr7_2:77811201-77811220 Msa1078810:CDS 50.0%
CGAGCTGCGATAAAGTTTCG+TGG + chr7_2:77811340-77811359 Msa1078810:CDS 50.0%
!! AAAGTTTCGTGGCGTCGATG+CGG + chr7_2:77811351-77811370 Msa1078810:CDS 50.0%
GCTCGTATGGGACAGTTTCT+TGG + chr7_2:77811723-77811742 Msa1078810:CDS 50.0%
ATAGCGAGCTAGATGCTGCA+AGG + chr7_2:77811916-77811935 Msa1078810:CDS 50.0%
! ACTTCCCAGGCTGATAACGA+TGG + chr7_2:77812155-77812174 Msa1078810:CDS 50.0%
AACATGCACCACAGTGGAAG+TGG + chr7_2:77812440-77812459 Msa1078810:CDS 50.0%
CTTGCAAACCACTTCCACTG+TGG - chr7_2:77812451-77812470 None:intergenic 50.0%
CTGAGCATCAACCTCCAATC+TGG + chr7_2:77812702-77812721 Msa1078810:CDS 50.0%
CATCAACCTCCAATCTGGAG+TGG + chr7_2:77812707-77812726 Msa1078810:CDS 50.0%
! TGCCATGCCCAATTTGGAAC+GGG - chr7_2:77812919-77812938 None:intergenic 50.0%
CTGCCATGCCCAATTTGGAA+CGG - chr7_2:77812920-77812939 None:intergenic 50.0%
GCTGCAGCAGAGAAATTAGG+TGG - chr7_2:77812979-77812998 None:intergenic 50.0%
TTCTCTGCTGCAGCATCATC+AGG + chr7_2:77812985-77813004 Msa1078810:CDS 50.0%
CTATCCGCAGCTGTTGTTGA+AGG - chr7_2:77813015-77813034 None:intergenic 50.0%
GAGTAGGAAAATGAGGGTGG+AGG - chr7_2:77813065-77813084 None:intergenic 50.0%
CTGGAGTAGGAAAATGAGGG+TGG - chr7_2:77813068-77813087 None:intergenic 50.0%
GTCGCTGGAGTAGGAAAATG+AGG - chr7_2:77813072-77813091 None:intergenic 50.0%
CCTGCAGTAGAAAGAGGGTA+TGG - chr7_2:77813106-77813125 None:intergenic 50.0%
CCATACCCTCTTTCTACTGC+AGG + chr7_2:77813103-77813122 Msa1078810:CDS 50.0%
CAGCTCCTGCAGTAGAAAGA+GGG - chr7_2:77813111-77813130 None:intergenic 50.0%
TCAGCTCCTGCAGTAGAAAG+AGG - chr7_2:77813112-77813131 None:intergenic 50.0%
ATCTGAACGACGGAGGAGAG+TGG - chr7_2:77810514-77810533 None:intergenic 55.0%
ACTCTCCTCCGTCGTTCAGA+TGG + chr7_2:77810513-77810532 Msa1078810:CDS 55.0%
TCCGGTGAGCTTCAACACTC+CGG + chr7_2:77810670-77810689 Msa1078810:CDS 55.0%
TGTCCGTACAACAGCTTCGC+CGG - chr7_2:77810698-77810717 None:intergenic 55.0%
! CGCCTTCTGAGAGTAGAGGA+TGG + chr7_2:77810755-77810774 Msa1078810:CDS 55.0%
TTCTCGTCCGATCATCACGG+TGG + chr7_2:77810784-77810803 Msa1078810:CDS 55.0%
AGCCGGTGAAGAAGAGTCGT+CGG + chr7_2:77810845-77810864 Msa1078810:CDS 55.0%
TACTGCGAGCTTCGTGACCT+CGG - chr7_2:77810874-77810893 None:intergenic 55.0%
TCACGAAGCTCGCAGTATCG+TGG + chr7_2:77810877-77810896 Msa1078810:CDS 55.0%
TCTACCGGAGAACTGGACGT+TGG + chr7_2:77810908-77810927 Msa1078810:CDS 55.0%
CTACCGGAGAACTGGACGTT+GGG + chr7_2:77810909-77810928 Msa1078810:CDS 55.0%
TGGACGATGGGAAGCTCGTA+TGG + chr7_2:77811710-77811729 Msa1078810:CDS 55.0%
GGACGATGGGAAGCTCGTAT+GGG + chr7_2:77811711-77811730 Msa1078810:CDS 55.0%
! TGAAAGAGCAGAGGGGCATG+AGG - chr7_2:77812562-77812581 None:intergenic 55.0%
CTCCCGTTCCAAATTGGGCA+TGG + chr7_2:77812914-77812933 Msa1078810:CDS 55.0%
TGGAGCTGCCATGCCCAATT+TGG - chr7_2:77812925-77812944 None:intergenic 55.0%
CTGGAGTTAGTCGCTGGAGT+AGG - chr7_2:77813081-77813100 None:intergenic 55.0%
! GTAGAAAGAGGGTATGGGGC+TGG - chr7_2:77813100-77813119 None:intergenic 55.0%
AAAATCCCTGCCGCAAGGCA+TGG + chr7_2:77813319-77813338 Msa1078810:three_prime_UTR 55.0%
GTTTACCATGCCTTGCGGCA+GGG - chr7_2:77813327-77813346 None:intergenic 55.0%
AGTTTACCATGCCTTGCGGC+AGG - chr7_2:77813328-77813347 None:intergenic 55.0%
GACGGAGGAGAGTGGAAGAG+AGG - chr7_2:77810506-77810525 None:intergenic 60.0%
!! AGTGTCGGCAGCGTTGACGA+CGG - chr7_2:77810566-77810585 None:intergenic 60.0%
!! GCCGGAGTGTTGAAGCTCAC+CGG - chr7_2:77810674-77810693 None:intergenic 60.0%
CGGTACGCCACCGTGATGAT+CGG - chr7_2:77810794-77810813 None:intergenic 60.0%
CGATCATCACGGTGGCGTAC+CGG + chr7_2:77810792-77810811 Msa1078810:CDS 60.0%
TGTTGCTCCACGACCTCAGC+CGG + chr7_2:77810828-77810847 Msa1078810:CDS 60.0%
! TTCTTCACCGGCTGAGGTCG+TGG - chr7_2:77810838-77810857 None:intergenic 60.0%
! CGACTCTTCTTCACCGGCTG+AGG - chr7_2:77810844-77810863 None:intergenic 60.0%
GCCGGTGAAGAAGAGTCGTC+GGG + chr7_2:77810846-77810865 Msa1078810:CDS 60.0%
CCCCGACGACTCTTCTTCAC+CGG - chr7_2:77810850-77810869 None:intergenic 60.0%
CCGGTGAAGAAGAGTCGTCG+GGG + chr7_2:77810847-77810866 Msa1078810:CDS 60.0%
TTACCTTGCCGCAGCATGCG+CGG - chr7_2:77811212-77811231 None:intergenic 60.0%
ATGGGGCTGGAGTTAGTCGC+TGG - chr7_2:77813087-77813106 None:intergenic 60.0%
GAGCTTCAACACTCCGGCGC+CGG + chr7_2:77810676-77810695 Msa1078810:CDS 65.0%
TACAACAGCTTCGCCGGCGC+CGG - chr7_2:77810692-77810711 None:intergenic 65.0%
! GCGCCGGCGAAGCTGTTGTA+CGG + chr7_2:77810692-77810711 Msa1078810:CDS 65.0%
AGAAGAGTCGTCGGGGACCG+AGG + chr7_2:77810854-77810873 Msa1078810:CDS 65.0%
ATACCGCGCATGCTGCGGCA+AGG + chr7_2:77811206-77811225 Msa1078810:CDS 65.0%
!! GTCGGCAGCGTTGACGACGG+AGG - chr7_2:77810563-77810582 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77810264 77813536 77810264 ID=Msa1078810;Name=Msa1078810
chr7_2 mRNA 77810264 77813536 77810264 ID=Msa1078810-mRNA-1;Parent=Msa1078810;Name=Msa1078810-mRNA-1;_AED=0.14;_eAED=0.14;_QI=211|1|1|1|1|1|10|405|471
chr7_2 exon 77810264 77810944 77810264 ID=Msa1078810-mRNA-1:exon:19239;Parent=Msa1078810-mRNA-1
chr7_2 exon 77811057 77811082 77811057 ID=Msa1078810-mRNA-1:exon:19240;Parent=Msa1078810-mRNA-1
chr7_2 exon 77811197 77811227 77811197 ID=Msa1078810-mRNA-1:exon:19241;Parent=Msa1078810-mRNA-1
chr7_2 exon 77811330 77811417 77811330 ID=Msa1078810-mRNA-1:exon:19242;Parent=Msa1078810-mRNA-1
chr7_2 exon 77811606 77811751 77811606 ID=Msa1078810-mRNA-1:exon:19243;Parent=Msa1078810-mRNA-1
chr7_2 exon 77811893 77811937 77811893 ID=Msa1078810-mRNA-1:exon:19244;Parent=Msa1078810-mRNA-1
chr7_2 exon 77812073 77812176 77812073 ID=Msa1078810-mRNA-1:exon:19245;Parent=Msa1078810-mRNA-1
chr7_2 exon 77812372 77812514 77812372 ID=Msa1078810-mRNA-1:exon:19246;Parent=Msa1078810-mRNA-1
chr7_2 exon 77812641 77812754 77812641 ID=Msa1078810-mRNA-1:exon:19247;Parent=Msa1078810-mRNA-1
chr7_2 exon 77812883 77813536 77812883 ID=Msa1078810-mRNA-1:exon:19248;Parent=Msa1078810-mRNA-1
chr7_2 five_prime_UTR 77810264 77810474 77810264 ID=Msa1078810-mRNA-1:five_prime_utr;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77810475 77810944 77810475 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77811057 77811082 77811057 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77811197 77811227 77811197 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77811330 77811417 77811330 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77811606 77811751 77811606 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77811893 77811937 77811893 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77812073 77812176 77812073 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77812372 77812514 77812372 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77812641 77812754 77812641 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 CDS 77812883 77813131 77812883 ID=Msa1078810-mRNA-1:cds;Parent=Msa1078810-mRNA-1
chr7_2 three_prime_UTR 77813132 77813536 77813132 ID=Msa1078810-mRNA-1:three_prime_utr;Parent=Msa1078810-mRNA-1
Gene Sequence

>Msa1078810

ATGTTGGATCTCAATCTCAACGCTGATTCCTCTCTTCCACTCTCCTCCGTCGTTCAGATGGAAGATTCATCCGGTAGCTTTGATTCCTCCGTCGTCAACGCTGCCGACACTGAAGATTCATGCTCTTACGGCGATGCATACGGTTACAACTTCGCCATACTCAACAACAACGCTTCCGTCGACAACGGTACTATCTCCGGTGAGCTTCAACACTCCGGCGCCGGCGAAGCTGTTGTACGGACAATTCAGCTTTTTCCAGCAAACGAATCGGGAATGATCTCGCCTTCTGAGAGTAGAGGATGGATGAATTTCTCGTCCGATCATCACGGTGGCGTACCGGAGCAGACTGTTGTTGTTGCTCCACGACCTCAGCCGGTGAAGAAGAGTCGTCGGGGACCGAGGTCACGAAGCTCGCAGTATCGTGGTGTTACTTTCTACCGGAGAACTGGACGTTGGGAATCGCATATTTGGGATTGTGGAAAACAAGTATACTTAGGTGGATTTGATACCGCGCATGCTGCGGCAAGAGCATATGATCGAGCTGCGATAAAGTTTCGTGGCGTCGATGCGGATATTAATTTCAATGTCAGTGATTATGATGAAGATATAAAGCAGATGAATAACTTTACAAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGGTTTCTCAAGGGGAAGTTCTAAATACAGAGGAGTTACTCTGCATAAATGTGGACGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGGCTTTTTGATAGCGAGCTAGATGCTGCAAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAATTTTGAGGCTAGTTCTTATGAAGGAGAGTTAACTTCCCAGGCTGATAACGATGATATCAAGCAGAATCTTGATCTGAACTTGGGTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCACCACAGTGGAAGTGGTTTGCAAGTTCAGCGTAACTGGGATGATATGCCTGTTGATAAGAGTGTAATGTTTGAGGACTCTGGGTCAAGATCACTCAATGTTCAGTCATCTTATGGCTTTCCCATAGCATCTGAGCATCAACCTCCAATCTGGAGTGGTACTAATTACTTTCCCGTGTGTAAGGAAAGAGCAATAGAGAATAGGATGGAATCTGCTCCCGTTCCAAATTGGGCATGGCAGCTCCAAAGTCCATATAATAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAACAGCTGCGGATAGTCAGATTCATTTTCCAAACATAACATACCTCCACCCTCATTTTCCTACTCCAGCGACTAACTCCAGCCCCATACCCTCTTTCTACTGCAGGAGCTGA
Protein sequence

>Msa1078810

MLDLNLNADSSLPLSSVVQMEDSSGSFDSSVVNAADTEDSCSYGDAYGYNFAILNNNASVDNGTISGELQHSGAGEAVVRTIQLFPANESGMISPSESRGWMNFSSDHHGGVPEQTVVVAPRPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMNNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYEGELTSQADNDDIKQNLDLNLGIAPPSNSDVQMMNMHHSGSGLQVQRNWDDMPVDKSVMFEDSGSRSLNVQSSYGFPIASEHQPPIWSGTNYFPVCKERAIENRMESAPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSTTAADSQIHFPNITYLHPHFPTPATNSSPIPSFYCRS*