AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0412660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412660 MtrunA17_Chr7g0263581 97.877 471 10 0 1 471 1 471 0.0 963
Msa0412660 MtrunA17_Chr4g0030191 54.273 433 135 13 1 408 1 395 1.82e-116 350
Msa0412660 MtrunA17_Chr2g0325911 50.808 433 139 16 1 408 1 384 1.91e-103 316
Msa0412660 MtrunA17_Chr5g0401891 83.770 191 31 0 124 314 137 327 2.99e-97 302
Msa0412660 MtrunA17_Chr4g0053181 83.333 192 31 1 124 314 161 352 4.98e-95 296
Msa0412660 MtrunA17_Chr7g0216601 50.000 202 87 3 136 323 65 266 4.69e-55 188
Msa0412660 MtrunA17_Chr1g0170761 43.161 329 141 13 1 315 3 299 1.26e-54 187
Msa0412660 MtrunA17_Chr4g0072291 49.744 195 86 4 110 293 134 327 1.15e-51 182
Msa0412660 MtrunA17_Chr3g0126151 80.851 94 18 0 177 270 47 140 3.60e-50 167
Msa0412660 MtrunA17_Chr4g0054351 52.047 171 71 3 136 295 310 480 7.49e-50 180
Msa0412660 MtrunA17_Chr7g0249621 41.045 268 119 7 82 330 209 456 2.23e-49 179
Msa0412660 MtrunA17_Chr4g0032631 52.071 169 70 3 136 293 163 331 3.30e-49 176
Msa0412660 MtrunA17_Chr4g0032631 44.156 77 41 1 126 200 255 331 5.69e-12 67.8
Msa0412660 MtrunA17_Chr4g0032631 42.857 91 43 2 215 296 150 240 7.48e-11 64.3
Msa0412660 MtrunA17_Chr5g0400871 51.462 171 72 3 136 295 249 419 6.58e-49 176
Msa0412660 MtrunA17_Chr5g0400871 40.000 95 48 2 211 296 232 326 8.21e-11 64.3
Msa0412660 MtrunA17_Chr4g0002011 49.770 217 84 6 130 321 30 246 7.50e-49 170
Msa0412660 MtrunA17_Chr8g0355191 44.545 220 105 5 113 323 31 242 2.70e-48 171
Msa0412660 MtrunA17_Chr3g0135161 49.180 183 84 4 122 295 295 477 5.32e-47 172
Msa0412660 MtrunA17_Chr8g0343851 51.807 166 72 3 136 293 248 413 7.12e-47 171
Msa0412660 MtrunA17_Chr4g0073521 46.809 188 92 3 113 292 24 211 1.72e-46 164
Msa0412660 MtrunA17_Chr1g0152161 50.595 168 75 3 136 295 312 479 2.97e-46 170
Msa0412660 MtrunA17_Chr6g0452911 48.619 181 75 4 140 302 65 245 1.07e-45 163
Msa0412660 MtrunA17_Chr2g0328971 49.704 169 71 4 136 293 167 332 1.33e-44 163
Msa0412660 MtrunA17_Chr2g0328971 44.156 77 41 1 126 200 256 332 1.05e-11 67.0
Msa0412660 MtrunA17_Chr8g0355181 47.236 199 93 4 119 307 37 233 1.45e-44 160
Msa0412660 MtrunA17_Chr5g0412151 51.053 190 82 3 117 295 205 394 2.84e-44 162
Msa0412660 MtrunA17_Chr8g0367311 56.716 134 57 1 163 295 19 152 8.17e-43 152
Msa0412660 MtrunA17_Chr8g0367311 36.449 107 63 3 102 203 48 154 1.74e-11 64.3
Msa0412660 MtrunA17_Chr8g0362541 46.341 205 87 4 111 292 43 247 1.73e-38 144
Msa0412660 MtrunA17_Chr7g0257361 48.571 140 55 3 136 262 57 192 1.58e-25 108
Msa0412660 MtrunA17_Chr2g0305821 44.697 132 64 3 116 238 25 156 2.71e-20 87.8
Msa0412660 MtrunA17_Chr2g0305831 50.000 66 33 0 238 303 5 70 3.45e-13 68.6
Msa0412660 MtrunA17_Chr8g0375031 53.125 64 27 2 139 200 124 186 7.78e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412660 AT2G28550.3 53.211 436 153 15 1 408 1 413 1.73e-108 330
Msa0412660 AT4G36920.1 66.406 256 76 3 117 369 110 358 1.67e-96 298
Msa0412660 AT4G36920.2 66.406 256 76 3 117 369 110 358 1.67e-96 298
Msa0412660 AT2G28550.1 50.229 436 151 16 1 408 1 398 4.41e-94 292
Msa0412660 AT5G67180.2 78.947 190 40 0 125 314 82 271 2.14e-90 277
Msa0412660 AT5G67180.1 78.947 190 40 0 125 314 82 271 3.50e-90 279
Msa0412660 AT5G67180.3 84.795 171 26 0 125 295 82 252 2.12e-88 271
Msa0412660 AT2G28550.4 57.827 313 99 8 1 289 1 304 4.23e-86 268
Msa0412660 AT2G28550.2 59.928 277 79 7 1 254 1 268 7.38e-76 239
Msa0412660 AT2G28550.6 59.928 277 79 7 1 254 1 268 7.38e-76 239
Msa0412660 AT5G67180.4 77.059 170 36 2 125 293 82 249 1.15e-73 233
Msa0412660 AT5G60120.1 38.370 503 218 18 1 455 1 459 1.65e-70 232
Msa0412660 AT5G60120.6 38.632 497 218 18 1 455 1 452 3.31e-70 231
Msa0412660 AT5G60120.4 44.110 365 138 12 1 330 1 334 6.28e-67 220
Msa0412660 AT5G60120.3 44.110 365 138 12 1 330 1 334 6.28e-67 220
Msa0412660 AT5G60120.5 44.110 365 138 12 1 330 1 334 6.28e-67 220
Msa0412660 AT5G60120.2 37.333 525 215 20 1 455 1 481 9.44e-67 223
Msa0412660 AT2G28550.5 52.713 258 88 9 156 408 4 232 8.38e-64 208
Msa0412660 AT1G72570.1 48.958 192 85 4 115 293 197 388 2.17e-51 179
Msa0412660 AT4G37750.1 43.460 237 107 4 114 323 258 494 5.00e-51 182
Msa0412660 AT5G57390.2 48.469 196 89 4 109 293 56 250 1.24e-50 178
Msa0412660 AT1G51190.1 44.206 233 103 6 72 293 139 355 2.12e-50 180
Msa0412660 AT5G57390.1 48.469 196 89 4 109 293 174 368 4.86e-50 179
Msa0412660 AT5G17430.2 48.438 192 87 4 112 292 122 312 1.22e-49 177
Msa0412660 AT5G17430.1 48.438 192 87 4 112 292 184 374 2.09e-49 178
Msa0412660 AT2G39250.1 39.701 335 123 11 1 326 1 265 3.14e-49 171
Msa0412660 AT3G20840.1 50.888 169 72 3 136 293 178 346 7.45e-49 176
Msa0412660 AT3G20840.1 44.156 77 41 1 126 200 270 346 8.78e-12 67.8
Msa0412660 AT2G39250.2 46.473 241 82 6 1 233 1 202 3.70e-48 166
Msa0412660 AT3G54320.3 46.829 205 84 4 120 299 32 236 2.26e-44 161
Msa0412660 AT5G65510.4 54.386 171 67 3 136 295 170 340 2.66e-44 161
Msa0412660 AT3G54320.1 46.602 206 85 4 120 300 32 237 2.87e-44 161
Msa0412660 AT5G65510.2 54.386 171 67 3 136 295 228 398 3.84e-44 162
Msa0412660 AT5G65510.1 54.386 171 67 3 136 295 228 398 3.84e-44 162
Msa0412660 AT3G54990.2 66.443 149 39 2 97 245 91 228 8.17e-44 154
Msa0412660 AT3G54990.1 59.016 183 50 3 97 279 91 248 1.30e-43 157
Msa0412660 AT5G10510.7 52.047 171 71 3 136 295 227 397 3.27e-42 157
Msa0412660 AT5G10510.5 52.047 171 71 3 136 295 227 397 3.27e-42 157
Msa0412660 AT5G10510.6 52.047 171 71 3 136 295 265 435 4.00e-42 158
Msa0412660 AT5G10510.4 52.047 171 71 3 136 295 265 435 4.00e-42 158
Msa0412660 AT5G10510.1 52.047 171 71 3 136 295 250 420 4.36e-42 157
Msa0412660 AT5G65510.3 53.191 141 55 3 136 265 170 310 2.53e-40 147
Msa0412660 AT1G79700.2 53.448 174 70 2 130 292 43 216 4.35e-40 147
Msa0412660 AT1G16060.1 50.000 188 83 2 116 292 35 222 3.54e-39 145
Msa0412660 AT5G10510.2 50.000 168 76 3 136 295 227 394 4.33e-38 146
Msa0412660 AT5G10510.3 45.026 191 74 4 136 295 265 455 1.90e-35 139
Msa0412660 AT1G79700.1 50.575 174 65 3 130 292 43 206 8.44e-33 127
Msa0412660 AT3G54320.4 50.725 138 67 1 163 299 33 170 1.49e-31 124
Msa0412660 AT3G54320.5 50.725 138 67 1 163 299 33 170 1.49e-31 124
Msa0412660 AT1G79700.3 54.412 136 61 1 158 292 5 140 1.13e-28 113
Msa0412660 AT1G16060.3 54.412 136 61 1 158 292 17 152 6.88e-28 112
Msa0412660 AT1G79700.4 54.264 129 58 1 165 292 6 134 1.46e-26 107
Msa0412660 AT2G41710.1 48.855 131 53 2 136 256 67 193 5.11e-25 107
Msa0412660 AT2G41710.4 48.855 131 53 2 136 256 67 193 6.99e-25 107
Msa0412660 AT2G41710.2 47.059 136 53 3 136 256 67 198 7.41e-23 100
Msa0412660 AT2G41710.3 46.281 121 51 2 146 256 112 228 3.51e-20 93.2
Msa0412660 AT3G54320.2 54.167 96 43 1 206 300 1 96 3.46e-19 88.2
Msa0412660 AT1G16060.2 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa0412660 AT1G16060.4 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa0412660 AT1G16060.6 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa0412660 AT1G16060.5 55.682 88 38 1 206 292 1 88 8.46e-18 82.4
Msa0412660 AT3G25730.1 38.947 95 54 2 128 222 53 143 2.56e-12 68.2
Msa0412660 AT1G68840.2 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
Msa0412660 AT1G68840.1 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
Msa0412660 AT2G47520.1 44.578 83 43 2 122 202 32 113 1.57e-11 63.2

Find 166 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGCTGCCATGCCCAATT+TGG 0.214682 3_2:+56116784 None:intergenic
ATCATTCCCGATTCGTTTGC+TGG 0.249662 3_2:+56118980 None:intergenic
CTCAATGTTCAGTCATCTTA+TGG 0.249805 3_2:-56117041 Msa0412660:CDS
GTTTGCAAGTTCAGCGTAAC+TGG 0.251291 3_2:-56117243 Msa0412660:CDS
AATCTGCTCCCGTTCCAAAT+TGG 0.265423 3_2:-56116798 Msa0412660:CDS
CTCCAAAGTCCATATAATAA+TGG 0.282974 3_2:-56116766 Msa0412660:CDS
GACGTTGGGAATCGCATATT+TGG 0.285512 3_2:-56118787 Msa0412660:intron
AGTCTTTGTATCCAAGGTTT+AGG 0.309744 3_2:-56116522 Msa0412660:three_prime_UTR
AAAGTTGACCCATTATTATA+TGG 0.312812 3_2:+56116757 None:intergenic
GCTCGTATGGGACAGTTTCT+TGG 0.324940 3_2:-56117987 Msa0412660:CDS
GGAAGCGTTGTTGTTGAGTA+TGG 0.328168 3_2:+56119081 None:intergenic
ACGATTCAGTTATGAAGATT+TGG 0.335301 3_2:+56119277 None:intergenic
TAGAAAAGGAATGAATTAAA+AGG 0.336131 3_2:-56119410 Msa0412660:five_prime_UTR
ATATAACCCACAAATAATAT+TGG 0.339629 3_2:+56116188 None:intergenic
ATCTGCTCCCGTTCCAAATT+GGG 0.340346 3_2:-56116797 Msa0412660:CDS
CGTTGATAGTTTGAGGACTC+TGG 0.357542 3_2:-56117074 Msa0412660:intron
AATGACATTATATTGCTATA+AGG 0.366223 3_2:-56119445 Msa0412660:five_prime_UTR
AAGAAAATAGGAATATTTAA+AGG 0.373877 3_2:+56116422 None:intergenic
ACCCATTATTATATGGACTT+TGG 0.377342 3_2:+56116764 None:intergenic
TTATGTAGGTATATATATCT+TGG 0.380122 3_2:-56117825 Msa0412660:intron
TTCTCTGCTGCAGCATCATC+AGG 0.380972 3_2:-56116721 Msa0412660:CDS
CTGAGCATCAACCTCCAATC+TGG 0.386362 3_2:-56117004 Msa0412660:CDS
AAAGTAGGAATTTAATTGCT+TGG 0.388624 3_2:-56116471 Msa0412660:three_prime_UTR
ACCATTACACTCTTATCAAC+AGG 0.390876 3_2:+56117211 None:intergenic
GTTACTTTCTACCGGAGAAC+TGG 0.391369 3_2:-56118809 Msa0412660:CDS
TCCAAAGTCCATATAATAAT+GGG 0.393361 3_2:-56116765 Msa0412660:CDS
TTCTTCACCGGCTGAGGTCG+TGG 0.400221 3_2:+56118875 None:intergenic
GATGCTGCAGCAGAGAAATT+AGG 0.402479 3_2:+56116727 None:intergenic
TAATTACTTTCCCGTGTGTA+AGG 0.413461 3_2:-56116973 Msa0412660:intron
CTCGTATGGGACAGTTTCTT+GGG 0.413776 3_2:-56117986 Msa0412660:CDS
TATGTAGGTATATATATCTT+GGG 0.414146 3_2:-56117824 Msa0412660:intron
AATATGATTATCAAACTTGT+AGG 0.417027 3_2:-56116499 Msa0412660:three_prime_UTR
TGCCATGCCCAATTTGGAAC+GGG 0.426003 3_2:+56116790 None:intergenic
GAATTGTAGCTTTATACTCT+AGG 0.434066 3_2:+56116562 None:intergenic
ACTGAAAATATTTGAGATGA+TGG 0.440420 3_2:-56116274 Msa0412660:three_prime_UTR
GGGTGGAGGTATGTTATGTT+TGG 0.445569 3_2:+56116658 None:intergenic
AGTTTACCATGCCTTGCGGC+AGG 0.447162 3_2:+56116383 None:intergenic
ATGATAACAAAGGAAGGAAA+TGG 0.447543 3_2:+56116319 None:intergenic
ATTTGAACATCAGAGTTAGA+AGG 0.449742 3_2:+56117292 None:intergenic
TTAAATTCCAATATTATTTG+TGG 0.449904 3_2:-56116195 Msa0412660:three_prime_UTR
TAAATTCCAATATTATTTGT+GGG 0.457494 3_2:-56116194 Msa0412660:three_prime_UTR
GCCGGTGAAGAAGAGTCGTC+GGG 0.459593 3_2:-56118864 Msa0412660:CDS
TGGACGATGGGAAGCTCGTA+TGG 0.459668 3_2:-56118000 Msa0412660:CDS
ATAATCATATTCCTAAACCT+TGG 0.459978 3_2:+56116511 None:intergenic
CCTGCAGTAGAAAGAGGGTA+TGG 0.464065 3_2:+56116603 None:intergenic
TACAACAGCTTCGCCGGCGC+CGG 0.464183 3_2:+56119021 None:intergenic
GCAGAATCTTGATCTGAACT+TGG 0.465184 3_2:-56117326 Msa0412660:CDS
CTATCCGCAGCTGTTGTTGA+AGG 0.465186 3_2:+56116694 None:intergenic
GGTAAGAAGAGGAATAGAAA+AGG 0.466484 3_2:-56119424 Msa0412660:five_prime_UTR
AAGAGCAATAGAGAATAGGA+TGG 0.477231 3_2:-56116821 Msa0412660:CDS
ACTCTCCTCCGTCGTTCAGA+TGG 0.481608 3_2:-56119197 Msa0412660:CDS
CTACCGGAGAACTGGACGTT+GGG 0.483697 3_2:-56118801 Msa0412660:CDS
AGGAAAGAGCAATAGAGAAT+AGG 0.487980 3_2:-56116825 Msa0412660:CDS
CCATACCCTCTTTCTACTGC+AGG 0.495357 3_2:-56116603 Msa0412660:CDS
TTTGAGGCTAGTTCTTATGA+AGG 0.495376 3_2:-56117585 Msa0412660:CDS
ACTGAAGATTCATGCTCTTA+CGG 0.496241 3_2:-56119127 Msa0412660:CDS
TAGTACCATCGTTATCAGCC+TGG 0.496630 3_2:+56117550 None:intergenic
TGCTCTTACGGCGATGCATA+CGG 0.502837 3_2:-56119115 Msa0412660:CDS
TTTATGAGATGATTCTAATG+AGG 0.504275 3_2:-56116345 Msa0412660:three_prime_UTR
ACGTCTAGTCTTTGTATCCA+AGG 0.505412 3_2:-56116528 Msa0412660:three_prime_UTR
TGTCCGTACAACAGCTTCGC+CGG 0.508835 3_2:+56119015 None:intergenic
GTAGAAAGAGGGTATGGGGC+TGG 0.510625 3_2:+56116609 None:intergenic
ATCGTGGTGTTACTTTCTAC+CGG 0.518398 3_2:-56118817 Msa0412660:CDS
TAATTAGTACCACTCCAGAT+TGG 0.520137 3_2:+56116990 None:intergenic
TGTTGCTCCACGACCTCAGC+CGG 0.520275 3_2:-56118882 Msa0412660:CDS
CGACTCTTCTTCACCGGCTG+AGG 0.520783 3_2:+56118869 None:intergenic
AACATGCACCACAGTGGAAG+TGG 0.520906 3_2:-56117265 Msa0412660:CDS
ATTCCCAACGTCCAGTTCTC+CGG 0.521427 3_2:+56118798 None:intergenic
ATGGGGCTGGAGTTAGTCGC+TGG 0.523340 3_2:+56116622 None:intergenic
TGAAGGAGAGTTAACTTCCC+AGG 0.523464 3_2:-56117568 Msa0412660:CDS
ATTCAGTTATGAAGATTTGG+AGG 0.523564 3_2:+56119280 None:intergenic
GTCGCTGGAGTAGGAAAATG+AGG 0.525924 3_2:+56116637 None:intergenic
GAGCTTCAACACTCCGGCGC+CGG 0.528911 3_2:-56119034 Msa0412660:CDS
CGGTACGCCACCGTGATGAT+CGG 0.529586 3_2:+56118919 None:intergenic
AGGTTGATGCTCAGATGCTA+TGG 0.530023 3_2:+56117013 None:intergenic
TGTGGAAAACAAGTATACTT+AGG 0.532079 3_2:-56118649 Msa0412660:intron
CTGCTATAAAATGCAATGGA+AGG 0.535486 3_2:-56117623 Msa0412660:CDS
CTGCAGTAGAAAGAGGGTAT+GGG 0.539113 3_2:+56116604 None:intergenic
CGATCATCACGGTGGCGTAC+CGG 0.539554 3_2:-56118918 Msa0412660:CDS
GTGAAAATGATAACAAAGGA+AGG 0.539785 3_2:+56116313 None:intergenic
CCCCGACGACTCTTCTTCAC+CGG 0.545486 3_2:+56118863 None:intergenic
CTGGAGTTAGTCGCTGGAGT+AGG 0.547085 3_2:+56116628 None:intergenic
AAACTCAAACCTCACAATGT+TGG 0.548139 3_2:-56119251 Msa0412660:exon
GCCGGAGTGTTGAAGCTCAC+CGG 0.549298 3_2:+56119039 None:intergenic
GTTGATAGTTTGAGGACTCT+GGG 0.550553 3_2:-56117073 Msa0412660:intron
GACAGAGTACTGGTTTCTCA+AGG 0.553049 3_2:-56118061 Msa0412660:CDS
GTTTACCATGCCTTGCGGCA+GGG 0.553482 3_2:+56116384 None:intergenic
TCAGCTCCTGCAGTAGAAAG+AGG 0.553716 3_2:+56116597 None:intergenic
TGATTACAGAGCGTATGATA+AGG 0.555672 3_2:-56117646 Msa0412660:intron
CTCCCGTTCCAAATTGGGCA+TGG 0.556092 3_2:-56116792 Msa0412660:CDS
TTATGATGAAGATATAAAGC+AGG 0.557521 3_2:-56118314 Msa0412660:intron
GCGCCGGCGAAGCTGTTGTA+CGG 0.557964 3_2:-56119018 Msa0412660:CDS
TACTGCGAGCTTCGTGACCT+CGG 0.565421 3_2:+56118839 None:intergenic
GATTGAGATCCAACATTGTG+AGG 0.565610 3_2:+56119242 None:intergenic
AAAATCCCTGCCGCAAGGCA+TGG 0.567862 3_2:-56116389 Msa0412660:three_prime_UTR
ATCTGAACGACGGAGGAGAG+TGG 0.568541 3_2:+56119199 None:intergenic
AACTTGTAGGGTCTAAAAGT+AGG 0.569140 3_2:-56116486 Msa0412660:three_prime_UTR
ATTCTGCGTAGACAGAGTAC+TGG 0.571541 3_2:-56118071 Msa0412660:CDS
GAGTAGGAAAATGAGGGTGG+AGG 0.571882 3_2:+56116644 None:intergenic
AGCCGGTGAAGAAGAGTCGT+CGG 0.574425 3_2:-56118865 Msa0412660:CDS
GTTCAGATGGAAGATTCATC+CGG 0.575771 3_2:-56119184 Msa0412660:CDS
CGAGCTGCGATAAAGTTTCG+TGG 0.575785 3_2:-56118370 Msa0412660:CDS
TGCAGTAGAAAGAGGGTATG+GGG 0.576798 3_2:+56116605 None:intergenic
TATCCGCAGCTGTTGTTGAA+GGG 0.577107 3_2:+56116695 None:intergenic
TGCTATAAAATGCAATGGAA+GGG 0.577688 3_2:-56117622 Msa0412660:CDS
CGCCTTCTGAGAGTAGAGGA+TGG 0.578820 3_2:-56118955 Msa0412660:CDS
GTCGACAACGGTACTATCTC+CGG 0.580552 3_2:-56119058 Msa0412660:CDS
TTACCTTGCCGCAGCATGCG+CGG 0.580853 3_2:+56118501 None:intergenic
TTCAGTTATGAAGATTTGGA+GGG 0.581412 3_2:+56119281 None:intergenic
TCTACCGGAGAACTGGACGT+TGG 0.583316 3_2:-56118802 Msa0412660:CDS
ATACCGCGCATGCTGCGGCA+AGG 0.583419 3_2:-56118504 Msa0412660:intron
GCAACAACAACAGTCTGCTC+CGG 0.583622 3_2:+56118899 None:intergenic
CAGAATCTTGATCTGAACTT+GGG 0.584312 3_2:-56117325 Msa0412660:CDS
AAGGCTGCTATAAAATGCAA+TGG 0.584344 3_2:-56117627 Msa0412660:CDS
TTAGTACCACTCCAGATTGG+AGG 0.585536 3_2:+56116993 None:intergenic
ATATGATTATCAAACTTGTA+GGG 0.585991 3_2:-56116498 Msa0412660:three_prime_UTR
GAATGAAAGATAGAGAGAGA+AGG 0.588114 3_2:+56119335 None:intergenic
GACGGAGGAATCAAAGCTAC+CGG 0.588222 3_2:+56119165 None:intergenic
TTTGCAAGTTCAGCGTAACT+GGG 0.588454 3_2:-56117242 Msa0412660:CDS
TCTGCATAAATGTGGACGAT+GGG 0.589018 3_2:-56118012 Msa0412660:CDS
AGTACCATCGTTATCAGCCT+GGG 0.589962 3_2:+56117551 None:intergenic
AGAAGAGTCGTCGGGGACCG+AGG 0.591121 3_2:-56118856 Msa0412660:CDS
ATCCATCCTCTACTCTCAGA+AGG 0.594152 3_2:+56118953 None:intergenic
CTGCCATGCCCAATTTGGAA+CGG 0.595613 3_2:+56116789 None:intergenic
GACGGAGGAGAGTGGAAGAG+AGG 0.597615 3_2:+56119207 None:intergenic
ATAGCGAGCTAGATGCTGCA+AGG 0.598807 3_2:-56117794 Msa0412660:intron
ACAGAGTACTGGTTTCTCAA+GGG 0.599902 3_2:-56118060 Msa0412660:CDS
ATTTGATACCGCGCATGCTG+CGG 0.600999 3_2:-56118509 Msa0412660:CDS
CAGAGTACTGGTTTCTCAAG+GGG 0.605158 3_2:-56118059 Msa0412660:CDS
TATTGCTATAAGGTAAGAAG+AGG 0.605217 3_2:-56119435 Msa0412660:five_prime_UTR
AAAGTTTCGTGGCGTCGATG+CGG 0.606313 3_2:-56118359 Msa0412660:CDS
GGACGATGGGAAGCTCGTAT+GGG 0.611195 3_2:-56117999 Msa0412660:CDS
CAGCTCCTGCAGTAGAAAGA+GGG 0.613397 3_2:+56116598 None:intergenic
ATTAGTATTCACCTTACACA+CGG 0.613966 3_2:+56116962 None:intergenic
TGAACATCAGAGTTAGAAGG+AGG 0.614498 3_2:+56117295 None:intergenic
GCCTGTTGATAAGAGTGTAA+TGG 0.619307 3_2:-56117212 Msa0412660:intron
AATTTCTCGTCCGATCATCA+CGG 0.619679 3_2:-56118929 Msa0412660:CDS
AACAACGCTTCCGTCGACAA+CGG 0.620133 3_2:-56119070 Msa0412660:CDS
CTAGAGTTTACCATGCCTTG+CGG 0.621770 3_2:+56116379 None:intergenic
GGAGTTACTCTGCATAAATG+TGG 0.624873 3_2:-56118020 Msa0412660:CDS
CTCTGCATAAATGTGGACGA+TGG 0.629073 3_2:-56118013 Msa0412660:CDS
GAGAGTGAAAATGATAACAA+AGG 0.632471 3_2:+56116309 None:intergenic
ATCTCGCCTTCTGAGAGTAG+AGG 0.632485 3_2:-56118959 Msa0412660:CDS
TCCGGTGAGCTTCAACACTC+CGG 0.632556 3_2:-56119040 Msa0412660:CDS
GTAGATGAATAACTTTACAA+AGG 0.633971 3_2:-56118108 Msa0412660:intron
TCACGAAGCTCGCAGTATCG+TGG 0.635514 3_2:-56118833 Msa0412660:CDS
AGAGCATGAATCTTCAGTGT+CGG 0.641138 3_2:+56119132 None:intergenic
GGTTGATGCTCAGATGCTAT+GGG 0.641889 3_2:+56117014 None:intergenic
GTCGGCAGCGTTGACGACGG+AGG 0.642992 3_2:+56119150 None:intergenic
GCTGCAGCAGAGAAATTAGG+TGG 0.656992 3_2:+56116730 None:intergenic
AATATTTGAGATGATGGTGA+AGG 0.660564 3_2:-56116268 Msa0412660:three_prime_UTR
CTGGAGTAGGAAAATGAGGG+TGG 0.661562 3_2:+56116641 None:intergenic
CATCAACCTCCAATCTGGAG+TGG 0.662314 3_2:-56116999 Msa0412660:CDS
GGAGATAGTACCGTTGTCGA+CGG 0.663908 3_2:+56119060 None:intergenic
ATCTTCCATCTGAACGACGG+AGG 0.664445 3_2:+56119192 None:intergenic
AGTGTCGGCAGCGTTGACGA+CGG 0.674336 3_2:+56119147 None:intergenic
TTAGTATTCACCTTACACAC+GGG 0.680796 3_2:+56116963 None:intergenic
AGGGGAAGTTCTAAATACAG+AGG 0.681558 3_2:-56118041 Msa0412660:CDS
ATTCCCTTCAACAACAGCTG+CGG 0.681754 3_2:-56116698 Msa0412660:CDS
TGAATCTTCCATCTGAACGA+CGG 0.693422 3_2:+56119189 None:intergenic
TCGCTGGAGTAGGAAAATGA+GGG 0.701704 3_2:+56116638 None:intergenic
CCGGTGAAGAAGAGTCGTCG+GGG 0.715698 3_2:-56118863 Msa0412660:CDS
TTCTCGTCCGATCATCACGG+TGG 0.718908 3_2:-56118926 Msa0412660:CDS
ACTTCCCAGGCTGATAACGA+TGG 0.728400 3_2:-56117555 Msa0412660:intron
ATGATGAACATGCACCACAG+TGG 0.729813 3_2:-56117271 Msa0412660:CDS
CTTGCAAACCACTTCCACTG+TGG 0.732557 3_2:+56117257 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATCAAATTAAACTAA+AGG + chr3_2:56117698-56117717 None:intergenic 10.0%
!!! TATTTAGTTCTTAATTATAT+TGG - chr3_2:56117766-56117785 Msa0412660:intron 10.0%
!! AAAGATCAAAATCTAAAAAA+AGG + chr3_2:56117093-56117112 None:intergenic 15.0%
!!! TCTTTGAAATTTAATTTTTC+AGG - chr3_2:56117108-56117127 Msa0412660:intron 15.0%
!!! TAAATATTGAATGTTTTTCA+TGG - chr3_2:56117205-56117224 Msa0412660:intron 15.0%
!! TATAATTAAGAACTAAATAC+TGG + chr3_2:56117765-56117784 None:intergenic 15.0%
!!! AAATGCCTAATTAAATATTT+TGG - chr3_2:56117912-56117931 Msa0412660:intron 15.0%
!! ATGATCCAAAATATTTAATT+AGG + chr3_2:56117920-56117939 None:intergenic 15.0%
!! TGATTATAAAACCAAAAAAA+AGG + chr3_2:56118140-56118159 None:intergenic 15.0%
!! AAGAAAATAGGAATATTTAA+AGG + chr3_2:56119224-56119243 None:intergenic 15.0%
!! TTAAATTCCAATATTATTTG+TGG - chr3_2:56119448-56119467 Msa0412660:five_prime_UTR 15.0%
!! AATGACATTATATTGCTATA+AGG - chr3_2:56116198-56116217 Msa0412660:three_prime_UTR 20.0%
!! TAGAAAAGGAATGAATTAAA+AGG - chr3_2:56116233-56116252 Msa0412660:three_prime_UTR 20.0%
!!! TTGAAATTTAATTTTTCAGG+TGG - chr3_2:56117111-56117130 Msa0412660:intron 20.0%
!! TTATGTAGGTATATATATCT+TGG - chr3_2:56117818-56117837 Msa0412660:CDS 20.0%
!! TATGTAGGTATATATATCTT+GGG - chr3_2:56117819-56117838 Msa0412660:CDS 20.0%
!! ATTTATCAATCATATATAGC+AGG - chr3_2:56117877-56117896 Msa0412660:intron 20.0%
!! ATTATTTGTGTTCTATTTAC+AGG - chr3_2:56118798-56118817 Msa0412660:CDS 20.0%
!! AATATGATTATCAAACTTGT+AGG - chr3_2:56119144-56119163 Msa0412660:CDS 20.0%
!! ATATGATTATCAAACTTGTA+GGG - chr3_2:56119145-56119164 Msa0412660:CDS 20.0%
! TTATGATGAAGATATAAAGC+AGG - chr3_2:56117329-56117348 Msa0412660:CDS 25.0%
! GTAGATGAATAACTTTACAA+AGG - chr3_2:56117535-56117554 Msa0412660:intron 25.0%
!!! AATCACAAATCAGTCATTTT+AGG + chr3_2:56117728-56117747 None:intergenic 25.0%
!!! AAGAACTAAATACTGGTTTA+TGG + chr3_2:56117758-56117777 None:intergenic 25.0%
! AGTTCTTAATTATATTGGTC+TGG - chr3_2:56117771-56117790 Msa0412660:intron 25.0%
!! GTTCTTAATTATATTGGTCT+GGG - chr3_2:56117772-56117791 Msa0412660:intron 25.0%
!! GTTGTTAATTATATTGGTCT+GGG - chr3_2:56117794-56117813 Msa0412660:intron 25.0%
! AGGTTAATTGACATACTTTA+AGG + chr3_2:56118224-56118243 None:intergenic 25.0%
! TTAACCTTTACTATTAAGAC+TGG - chr3_2:56118237-56118256 Msa0412660:intron 25.0%
! TCCAAAGTCCATATAATAAT+GGG - chr3_2:56118878-56118897 Msa0412660:CDS 25.0%
! AAAGTTGACCCATTATTATA+TGG + chr3_2:56118889-56118908 None:intergenic 25.0%
! ATAATCATATTCCTAAACCT+TGG + chr3_2:56119135-56119154 None:intergenic 25.0%
! AAAGTAGGAATTTAATTGCT+TGG - chr3_2:56119172-56119191 Msa0412660:CDS 25.0%
!!! TTTTTTACACGGAAGAAAAT+AGG + chr3_2:56119236-56119255 None:intergenic 25.0%
! TTTATGAGATGATTCTAATG+AGG - chr3_2:56119298-56119317 Msa0412660:five_prime_UTR 25.0%
!! TATTTTCAGTAAGAAATGCA+TGG + chr3_2:56119359-56119378 None:intergenic 25.0%
!! ACTGAAAATATTTGAGATGA+TGG - chr3_2:56119369-56119388 Msa0412660:five_prime_UTR 25.0%
TATTGCTATAAGGTAAGAAG+AGG - chr3_2:56116208-56116227 Msa0412660:three_prime_UTR 30.0%
!! GAAGTGAAGCATTTTCATTT+TGG - chr3_2:56116283-56116302 Msa0412660:three_prime_UTR 30.0%
TTCAGTTATGAAGATTTGGA+GGG + chr3_2:56116365-56116384 None:intergenic 30.0%
ATTCAGTTATGAAGATTTGG+AGG + chr3_2:56116366-56116385 None:intergenic 30.0%
ACGATTCAGTTATGAAGATT+TGG + chr3_2:56116369-56116388 None:intergenic 30.0%
!! TCTGTTTTCGTTTTTCTGTA+GGG - chr3_2:56116969-56116988 Msa0412660:intron 30.0%
TGTGGAAAACAAGTATACTT+AGG - chr3_2:56116994-56117013 Msa0412660:CDS 30.0%
GTCTGGGTTGTTAATTATAT+TGG - chr3_2:56117788-56117807 Msa0412660:intron 30.0%
GGTTGTTAATTATATTGGTC+TGG - chr3_2:56117793-56117812 Msa0412660:intron 30.0%
! TACATGTTGTGTTATTGACT+TGG - chr3_2:56117962-56117981 Msa0412660:intron 30.0%
TGCTATAAAATGCAATGGAA+GGG - chr3_2:56118021-56118040 Msa0412660:CDS 30.0%
AGAGTGAGTGATAGTTTATA+TGG + chr3_2:56118187-56118206 None:intergenic 30.0%
ATCACCAGTCTTAATAGTAA+AGG + chr3_2:56118244-56118263 None:intergenic 30.0%
ATTTGAACATCAGAGTTAGA+AGG + chr3_2:56118354-56118373 None:intergenic 30.0%
! TTGATAAGAGTGTAATGGTA+AGG - chr3_2:56118436-56118455 Msa0412660:intron 30.0%
ATTAGTATTCACCTTACACA+CGG + chr3_2:56118684-56118703 None:intergenic 30.0%
ATATCTTAAGAATCTTCTGC+TGG - chr3_2:56118763-56118782 Msa0412660:intron 30.0%
CTCCAAAGTCCATATAATAA+TGG - chr3_2:56118877-56118896 Msa0412660:CDS 30.0%
ACCCATTATTATATGGACTT+TGG + chr3_2:56118882-56118901 None:intergenic 30.0%
!! GAATTGTAGCTTTATACTCT+AGG + chr3_2:56119084-56119103 None:intergenic 30.0%
ATGATAACAAAGGAAGGAAA+TGG + chr3_2:56119327-56119346 None:intergenic 30.0%
GTGAAAATGATAACAAAGGA+AGG + chr3_2:56119333-56119352 None:intergenic 30.0%
GAGAGTGAAAATGATAACAA+AGG + chr3_2:56119337-56119356 None:intergenic 30.0%
! AATATTTGAGATGATGGTGA+AGG - chr3_2:56119375-56119394 Msa0412660:five_prime_UTR 30.0%
GGTAAGAAGAGGAATAGAAA+AGG - chr3_2:56116219-56116238 Msa0412660:three_prime_UTR 35.0%
GAATGAAAGATAGAGAGAGA+AGG + chr3_2:56116311-56116330 None:intergenic 35.0%
AAACTCAAACCTCACAATGT+TGG - chr3_2:56116392-56116411 Msa0412660:three_prime_UTR 35.0%
ACTGAAGATTCATGCTCTTA+CGG - chr3_2:56116516-56116535 Msa0412660:three_prime_UTR 35.0%
ATTTGGTTAGCATTTCGCAA+TGG - chr3_2:56116873-56116892 Msa0412660:intron 35.0%
ACAGAAAAACGAAAACAGAG+TGG + chr3_2:56116968-56116987 None:intergenic 35.0%
!! CTCTGTTTTCGTTTTTCTGT+AGG - chr3_2:56116968-56116987 Msa0412660:intron 35.0%
! ATATTGGTCTGGGTTTATGT+AGG - chr3_2:56117804-56117823 Msa0412660:CDS 35.0%
TGATTACAGAGCGTATGATA+AGG - chr3_2:56117997-56118016 Msa0412660:CDS 35.0%
AAGGCTGCTATAAAATGCAA+TGG - chr3_2:56118016-56118035 Msa0412660:CDS 35.0%
CTGCTATAAAATGCAATGGA+AGG - chr3_2:56118020-56118039 Msa0412660:CDS 35.0%
! GGAAGCAGTTACAAATTTTG+AGG - chr3_2:56118042-56118061 Msa0412660:CDS 35.0%
! TTTGAGGCTAGTTCTTATGA+AGG - chr3_2:56118058-56118077 Msa0412660:CDS 35.0%
GTACTACTTATTGACCATTG+AGG - chr3_2:56118110-56118129 Msa0412660:intron 35.0%
AAAAAAAAGGTGAGCCTCAA+TGG + chr3_2:56118127-56118146 None:intergenic 35.0%
!!! ATTGAGGCTCACCTTTTTTT+TGG - chr3_2:56118126-56118145 Msa0412660:intron 35.0%
CAGAATCTTGATCTGAACTT+GGG - chr3_2:56118318-56118337 Msa0412660:CDS 35.0%
ACCATTACACTCTTATCAAC+AGG + chr3_2:56118435-56118454 None:intergenic 35.0%
AATTCATGTGAAAGAGCAGA+GGG + chr3_2:56118507-56118526 None:intergenic 35.0%
!! TAATCTGCGTTGATAGTTTG+AGG - chr3_2:56118562-56118581 Msa0412660:intron 35.0%
CTCAATGTTCAGTCATCTTA+TGG - chr3_2:56118602-56118621 Msa0412660:intron 35.0%
TAATTAGTACCACTCCAGAT+TGG + chr3_2:56118656-56118675 None:intergenic 35.0%
TAATTACTTTCCCGTGTGTA+AGG - chr3_2:56118670-56118689 Msa0412660:intron 35.0%
TTAGTATTCACCTTACACAC+GGG + chr3_2:56118683-56118702 None:intergenic 35.0%
AGGAAAGAGCAATAGAGAAT+AGG - chr3_2:56118818-56118837 Msa0412660:CDS 35.0%
AAGAGCAATAGAGAATAGGA+TGG - chr3_2:56118822-56118841 Msa0412660:CDS 35.0%
AGTCTTTGTATCCAAGGTTT+AGG - chr3_2:56119121-56119140 Msa0412660:CDS 35.0%
AACTTGTAGGGTCTAAAAGT+AGG - chr3_2:56119157-56119176 Msa0412660:CDS 35.0%
GATTGAGATCCAACATTGTG+AGG + chr3_2:56116404-56116423 None:intergenic 40.0%
TGAATCTTCCATCTGAACGA+CGG + chr3_2:56116457-56116476 None:intergenic 40.0%
GTTCAGATGGAAGATTCATC+CGG - chr3_2:56116459-56116478 Msa0412660:three_prime_UTR 40.0%
AGAGCATGAATCTTCAGTGT+CGG + chr3_2:56116514-56116533 None:intergenic 40.0%
!! GCTTTTTCCAGCAAACGAAT+CGG - chr3_2:56116656-56116675 Msa0412660:CDS 40.0%
! CTTTTTCCAGCAAACGAATC+GGG - chr3_2:56116657-56116676 Msa0412660:CDS 40.0%
AATTTCTCGTCCGATCATCA+CGG - chr3_2:56116714-56116733 Msa0412660:CDS 40.0%
!! ATCGTGGTGTTACTTTCTAC+CGG - chr3_2:56116826-56116845 Msa0412660:CDS 40.0%
!! TCGTTTTTCTGTAGGGATTG+TGG - chr3_2:56116976-56116995 Msa0412660:CDS 40.0%
!! ACAGAGTACTGGTTTCTCAA+GGG - chr3_2:56117583-56117602 Msa0412660:CDS 40.0%
!! AGGGGAAGTTCTAAATACAG+AGG - chr3_2:56117602-56117621 Msa0412660:CDS 40.0%
GGAGTTACTCTGCATAAATG+TGG - chr3_2:56117623-56117642 Msa0412660:CDS 40.0%
TCTGCATAAATGTGGACGAT+GGG - chr3_2:56117631-56117650 Msa0412660:CDS 40.0%
GCAGAATCTTGATCTGAACT+TGG - chr3_2:56118317-56118336 Msa0412660:CDS 40.0%
TGAACATCAGAGTTAGAAGG+AGG + chr3_2:56118351-56118370 None:intergenic 40.0%
TTTGCAAGTTCAGCGTAACT+GGG - chr3_2:56118401-56118420 Msa0412660:intron 40.0%
! GCCTGTTGATAAGAGTGTAA+TGG - chr3_2:56118431-56118450 Msa0412660:intron 40.0%
ATTCATGTGAAAGAGCAGAG+GGG + chr3_2:56118506-56118525 None:intergenic 40.0%
GAATTCATGTGAAAGAGCAG+AGG + chr3_2:56118508-56118527 None:intergenic 40.0%
!! GTTGATAGTTTGAGGACTCT+GGG - chr3_2:56118570-56118589 Msa0412660:intron 40.0%
! ACGTCTAGTCTTTGTATCCA+AGG - chr3_2:56119115-56119134 Msa0412660:CDS 40.0%
!!! CGGCAGGGATTTTTTTTACA+CGG + chr3_2:56119247-56119266 None:intergenic 40.0%
TAAAAAAAATCCCTGCCGCA+AGG - chr3_2:56119249-56119268 Msa0412660:exon 40.0%
!! GGAAGCGTTGTTGTTGAGTA+TGG + chr3_2:56116565-56116584 None:intergenic 45.0%
! ATCATTCCCGATTCGTTTGC+TGG + chr3_2:56116666-56116685 None:intergenic 45.0%
ATCCATCCTCTACTCTCAGA+AGG + chr3_2:56116693-56116712 None:intergenic 45.0%
! GTTACTTTCTACCGGAGAAC+TGG - chr3_2:56116834-56116853 Msa0412660:intron 45.0%
GACGTTGGGAATCGCATATT+TGG - chr3_2:56116856-56116875 Msa0412660:intron 45.0%
ATTCTGCGTAGACAGAGTAC+TGG - chr3_2:56117572-56117591 Msa0412660:CDS 45.0%
!! GACAGAGTACTGGTTTCTCA+AGG - chr3_2:56117582-56117601 Msa0412660:CDS 45.0%
!! CAGAGTACTGGTTTCTCAAG+GGG - chr3_2:56117584-56117603 Msa0412660:CDS 45.0%
CTCTGCATAAATGTGGACGA+TGG - chr3_2:56117630-56117649 Msa0412660:CDS 45.0%
CTCGTATGGGACAGTTTCTT+GGG - chr3_2:56117657-56117676 Msa0412660:intron 45.0%
TGAAGGAGAGTTAACTTCCC+AGG - chr3_2:56118075-56118094 Msa0412660:CDS 45.0%
AGTACCATCGTTATCAGCCT+GGG + chr3_2:56118095-56118114 None:intergenic 45.0%
TAGTACCATCGTTATCAGCC+TGG + chr3_2:56118096-56118115 None:intergenic 45.0%
ATGATGAACATGCACCACAG+TGG - chr3_2:56118372-56118391 Msa0412660:CDS 45.0%
GTTTGCAAGTTCAGCGTAAC+TGG - chr3_2:56118400-56118419 Msa0412660:intron 45.0%
!! CGTTGATAGTTTGAGGACTC+TGG - chr3_2:56118569-56118588 Msa0412660:intron 45.0%
! GGTTGATGCTCAGATGCTAT+GGG + chr3_2:56118632-56118651 None:intergenic 45.0%
!! AGGTTGATGCTCAGATGCTA+TGG + chr3_2:56118633-56118652 None:intergenic 45.0%
TTAGTACCACTCCAGATTGG+AGG + chr3_2:56118653-56118672 None:intergenic 45.0%
AATCTGCTCCCGTTCCAAAT+TGG - chr3_2:56118845-56118864 Msa0412660:CDS 45.0%
ATCTGCTCCCGTTCCAAATT+GGG - chr3_2:56118846-56118865 Msa0412660:CDS 45.0%
GATGCTGCAGCAGAGAAATT+AGG + chr3_2:56118919-56118938 None:intergenic 45.0%
ATTCCCTTCAACAACAGCTG+CGG - chr3_2:56118945-56118964 Msa0412660:CDS 45.0%
TATCCGCAGCTGTTGTTGAA+GGG + chr3_2:56118951-56118970 None:intergenic 45.0%
! GGGTGGAGGTATGTTATGTT+TGG + chr3_2:56118988-56119007 None:intergenic 45.0%
TCGCTGGAGTAGGAAAATGA+GGG + chr3_2:56119008-56119027 None:intergenic 45.0%
! TGCAGTAGAAAGAGGGTATG+GGG + chr3_2:56119041-56119060 None:intergenic 45.0%
! CTGCAGTAGAAAGAGGGTAT+GGG + chr3_2:56119042-56119061 None:intergenic 45.0%
CTAGAGTTTACCATGCCTTG+CGG + chr3_2:56119267-56119286 None:intergenic 45.0%
ATCTTCCATCTGAACGACGG+AGG + chr3_2:56116454-56116473 None:intergenic 50.0%
GACGGAGGAATCAAAGCTAC+CGG + chr3_2:56116481-56116500 None:intergenic 50.0%
TGCTCTTACGGCGATGCATA+CGG - chr3_2:56116528-56116547 Msa0412660:three_prime_UTR 50.0%
AACAACGCTTCCGTCGACAA+CGG - chr3_2:56116573-56116592 Msa0412660:three_prime_UTR 50.0%
GGAGATAGTACCGTTGTCGA+CGG + chr3_2:56116586-56116605 None:intergenic 50.0%
GTCGACAACGGTACTATCTC+CGG - chr3_2:56116585-56116604 Msa0412660:exon 50.0%
! ATCTCGCCTTCTGAGAGTAG+AGG - chr3_2:56116684-56116703 Msa0412660:CDS 50.0%
GCAACAACAACAGTCTGCTC+CGG + chr3_2:56116747-56116766 None:intergenic 50.0%
ATTCCCAACGTCCAGTTCTC+CGG + chr3_2:56116848-56116867 None:intergenic 50.0%
ATTTGATACCGCGCATGCTG+CGG - chr3_2:56117134-56117153 Msa0412660:intron 50.0%
CGAGCTGCGATAAAGTTTCG+TGG - chr3_2:56117273-56117292 Msa0412660:CDS 50.0%
!! AAAGTTTCGTGGCGTCGATG+CGG - chr3_2:56117284-56117303 Msa0412660:CDS 50.0%
GCTCGTATGGGACAGTTTCT+TGG - chr3_2:56117656-56117675 Msa0412660:intron 50.0%
ATAGCGAGCTAGATGCTGCA+AGG - chr3_2:56117849-56117868 Msa0412660:intron 50.0%
! ACTTCCCAGGCTGATAACGA+TGG - chr3_2:56118088-56118107 Msa0412660:CDS 50.0%
AACATGCACCACAGTGGAAG+TGG - chr3_2:56118378-56118397 Msa0412660:CDS 50.0%
CTTGCAAACCACTTCCACTG+TGG + chr3_2:56118389-56118408 None:intergenic 50.0%
CTGAGCATCAACCTCCAATC+TGG - chr3_2:56118639-56118658 Msa0412660:intron 50.0%
CATCAACCTCCAATCTGGAG+TGG - chr3_2:56118644-56118663 Msa0412660:intron 50.0%
! TGCCATGCCCAATTTGGAAC+GGG + chr3_2:56118856-56118875 None:intergenic 50.0%
CTGCCATGCCCAATTTGGAA+CGG + chr3_2:56118857-56118876 None:intergenic 50.0%
GCTGCAGCAGAGAAATTAGG+TGG + chr3_2:56118916-56118935 None:intergenic 50.0%
TTCTCTGCTGCAGCATCATC+AGG - chr3_2:56118922-56118941 Msa0412660:CDS 50.0%
CTATCCGCAGCTGTTGTTGA+AGG + chr3_2:56118952-56118971 None:intergenic 50.0%
GAGTAGGAAAATGAGGGTGG+AGG + chr3_2:56119002-56119021 None:intergenic 50.0%
CTGGAGTAGGAAAATGAGGG+TGG + chr3_2:56119005-56119024 None:intergenic 50.0%
GTCGCTGGAGTAGGAAAATG+AGG + chr3_2:56119009-56119028 None:intergenic 50.0%
CCTGCAGTAGAAAGAGGGTA+TGG + chr3_2:56119043-56119062 None:intergenic 50.0%
CCATACCCTCTTTCTACTGC+AGG - chr3_2:56119040-56119059 Msa0412660:CDS 50.0%
CAGCTCCTGCAGTAGAAAGA+GGG + chr3_2:56119048-56119067 None:intergenic 50.0%
TCAGCTCCTGCAGTAGAAAG+AGG + chr3_2:56119049-56119068 None:intergenic 50.0%
ATCTGAACGACGGAGGAGAG+TGG + chr3_2:56116447-56116466 None:intergenic 55.0%
ACTCTCCTCCGTCGTTCAGA+TGG - chr3_2:56116446-56116465 Msa0412660:three_prime_UTR 55.0%
TCCGGTGAGCTTCAACACTC+CGG - chr3_2:56116603-56116622 Msa0412660:CDS 55.0%
TGTCCGTACAACAGCTTCGC+CGG + chr3_2:56116631-56116650 None:intergenic 55.0%
! CGCCTTCTGAGAGTAGAGGA+TGG - chr3_2:56116688-56116707 Msa0412660:CDS 55.0%
TTCTCGTCCGATCATCACGG+TGG - chr3_2:56116717-56116736 Msa0412660:CDS 55.0%
AGCCGGTGAAGAAGAGTCGT+CGG - chr3_2:56116778-56116797 Msa0412660:CDS 55.0%
TACTGCGAGCTTCGTGACCT+CGG + chr3_2:56116807-56116826 None:intergenic 55.0%
TCACGAAGCTCGCAGTATCG+TGG - chr3_2:56116810-56116829 Msa0412660:CDS 55.0%
TCTACCGGAGAACTGGACGT+TGG - chr3_2:56116841-56116860 Msa0412660:intron 55.0%
CTACCGGAGAACTGGACGTT+GGG - chr3_2:56116842-56116861 Msa0412660:intron 55.0%
TGGACGATGGGAAGCTCGTA+TGG - chr3_2:56117643-56117662 Msa0412660:intron 55.0%
GGACGATGGGAAGCTCGTAT+GGG - chr3_2:56117644-56117663 Msa0412660:intron 55.0%
! TGAAAGAGCAGAGGGGCATG+AGG + chr3_2:56118499-56118518 None:intergenic 55.0%
CTCCCGTTCCAAATTGGGCA+TGG - chr3_2:56118851-56118870 Msa0412660:CDS 55.0%
TGGAGCTGCCATGCCCAATT+TGG + chr3_2:56118862-56118881 None:intergenic 55.0%
CTGGAGTTAGTCGCTGGAGT+AGG + chr3_2:56119018-56119037 None:intergenic 55.0%
! GTAGAAAGAGGGTATGGGGC+TGG + chr3_2:56119037-56119056 None:intergenic 55.0%
AAAATCCCTGCCGCAAGGCA+TGG - chr3_2:56119254-56119273 Msa0412660:exon 55.0%
GTTTACCATGCCTTGCGGCA+GGG + chr3_2:56119262-56119281 None:intergenic 55.0%
AGTTTACCATGCCTTGCGGC+AGG + chr3_2:56119263-56119282 None:intergenic 55.0%
GACGGAGGAGAGTGGAAGAG+AGG + chr3_2:56116439-56116458 None:intergenic 60.0%
!! AGTGTCGGCAGCGTTGACGA+CGG + chr3_2:56116499-56116518 None:intergenic 60.0%
!! GCCGGAGTGTTGAAGCTCAC+CGG + chr3_2:56116607-56116626 None:intergenic 60.0%
CGGTACGCCACCGTGATGAT+CGG + chr3_2:56116727-56116746 None:intergenic 60.0%
CGATCATCACGGTGGCGTAC+CGG - chr3_2:56116725-56116744 Msa0412660:CDS 60.0%
TGTTGCTCCACGACCTCAGC+CGG - chr3_2:56116761-56116780 Msa0412660:CDS 60.0%
! TTCTTCACCGGCTGAGGTCG+TGG + chr3_2:56116771-56116790 None:intergenic 60.0%
! CGACTCTTCTTCACCGGCTG+AGG + chr3_2:56116777-56116796 None:intergenic 60.0%
GCCGGTGAAGAAGAGTCGTC+GGG - chr3_2:56116779-56116798 Msa0412660:CDS 60.0%
CCCCGACGACTCTTCTTCAC+CGG + chr3_2:56116783-56116802 None:intergenic 60.0%
CCGGTGAAGAAGAGTCGTCG+GGG - chr3_2:56116780-56116799 Msa0412660:CDS 60.0%
TTACCTTGCCGCAGCATGCG+CGG + chr3_2:56117145-56117164 None:intergenic 60.0%
ATGGGGCTGGAGTTAGTCGC+TGG + chr3_2:56119024-56119043 None:intergenic 60.0%
GAGCTTCAACACTCCGGCGC+CGG - chr3_2:56116609-56116628 Msa0412660:CDS 65.0%
TACAACAGCTTCGCCGGCGC+CGG + chr3_2:56116625-56116644 None:intergenic 65.0%
! GCGCCGGCGAAGCTGTTGTA+CGG - chr3_2:56116625-56116644 Msa0412660:CDS 65.0%
AGAAGAGTCGTCGGGGACCG+AGG - chr3_2:56116787-56116806 Msa0412660:CDS 65.0%
ATACCGCGCATGCTGCGGCA+AGG - chr3_2:56117139-56117158 Msa0412660:intron 65.0%
!! GTCGGCAGCGTTGACGACGG+AGG + chr3_2:56116496-56116515 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 56116194 56119471 56116194 ID=Msa0412660;Name=Msa0412660
chr3_2 mRNA 56116194 56119471 56116194 ID=Msa0412660-mRNA-1;Parent=Msa0412660;Name=Msa0412660-mRNA-1;_AED=0.14;_eAED=0.14;_QI=214|1|1|1|1|1|10|403|471
chr3_2 exon 56116194 56116845 56116194 ID=Msa0412660-mRNA-1:exon:11472;Parent=Msa0412660-mRNA-1
chr3_2 exon 56116974 56117087 56116974 ID=Msa0412660-mRNA-1:exon:11471;Parent=Msa0412660-mRNA-1
chr3_2 exon 56117213 56117355 56117213 ID=Msa0412660-mRNA-1:exon:11470;Parent=Msa0412660-mRNA-1
chr3_2 exon 56117556 56117659 56117556 ID=Msa0412660-mRNA-1:exon:11469;Parent=Msa0412660-mRNA-1
chr3_2 exon 56117795 56117839 56117795 ID=Msa0412660-mRNA-1:exon:11468;Parent=Msa0412660-mRNA-1
chr3_2 exon 56117981 56118126 56117981 ID=Msa0412660-mRNA-1:exon:11467;Parent=Msa0412660-mRNA-1
chr3_2 exon 56118315 56118402 56118315 ID=Msa0412660-mRNA-1:exon:11466;Parent=Msa0412660-mRNA-1
chr3_2 exon 56118505 56118535 56118505 ID=Msa0412660-mRNA-1:exon:11465;Parent=Msa0412660-mRNA-1
chr3_2 exon 56118650 56118675 56118650 ID=Msa0412660-mRNA-1:exon:11464;Parent=Msa0412660-mRNA-1
chr3_2 exon 56118788 56119471 56118788 ID=Msa0412660-mRNA-1:exon:11463;Parent=Msa0412660-mRNA-1
chr3_2 five_prime_UTR 56119258 56119471 56119258 ID=Msa0412660-mRNA-1:five_prime_utr;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56118788 56119257 56118788 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56118650 56118675 56118650 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56118505 56118535 56118505 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56118315 56118402 56118315 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56117981 56118126 56117981 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56117795 56117839 56117795 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56117556 56117659 56117556 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56117213 56117355 56117213 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56116974 56117087 56116974 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 CDS 56116597 56116845 56116597 ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1
chr3_2 three_prime_UTR 56116194 56116596 56116194 ID=Msa0412660-mRNA-1:three_prime_utr;Parent=Msa0412660-mRNA-1
Gene Sequence

>Msa0412660

ATGTTGGATCTCAATCTCAACGCTGATTCCTCTCTTCCACTCTCCTCCGTCGTTCAGATGGAAGATTCATCCGGTAGCTTTGATTCCTCCGTCGTCAACGCTGCCGACACTGAAGATTCATGCTCTTACGGCGATGCATACGGTTACAACTTCGCCATACTCAACAACAACGCTTCCGTCGACAACGGTACTATCTCCGGTGAGCTTCAACACTCCGGCGCCGGCGAAGCTGTTGTACGGACAATTCAGCTTTTTCCAGCAAACGAATCGGGAATGATCTCGCCTTCTGAGAGTAGAGGATGGATGAATTTCTCGTCCGATCATCACGGTGGCGTACCGGAGCAGACTGTTGTTGTTGCTCCACGACCTCAGCCGGTGAAGAAGAGTCGTCGGGGACCGAGGTCACGAAGCTCGCAGTATCGTGGTGTTACTTTCTACCGGAGAACTGGACGTTGGGAATCGCATATTTGGGATTGTGGAAAACAAGTATACTTAGGTGGATTTGATACCGCGCATGCTGCGGCAAGAGCATATGATCGAGCTGCGATAAAGTTTCGTGGCGTCGATGCGGATATTAATTTCAATGTCAGTGATTATGATGAAGATATAAAGCAGATGAATAACTTTACAAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGGTTTCTCAAGGGGAAGTTCTAAATACAGAGGAGTTACTCTGCATAAATGTGGACGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGGCTTTTTGATAGCGAGCTAGATGCTGCAAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAATTTTGAGGCTAGTTCTTATGAAGGAGAGTTAACTTCCCAGGCTGATAACGATGATATCAAGCAGAATCTTGATCTGAACTTGGGTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCACCACAGTGGAAGTGGTTTGCAAGTTCAGCGTAACTGGGATGATATGCCTGTTGATAAGAGTGTAATGTTTGAGGACTCTGGGTCAAGATCACTCAATGTTCAGTCATCTTATGGCTTTCCCATAGCATCTGAGCATCAACCTCCAATCTGGAGTGGTACTAATTACTTTCCCGTGTGTAAGGAAAGAGCAATAGAGAATAGGATGGAATCTGCTCCCGTTCCAAATTGGGCATGGCAGCTCCAAAGTCCATATAATAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAACAGCTGCGGATAGTCAGATTCATTTTCCAAACATAACATACCTCCACCCTCATTTTCCTACTCCAGCGACTAACTCCAGCCCCATACCCTCTTTCTACTGCAGGAGCTGA

Protein sequence

>Msa0412660

MLDLNLNADSSLPLSSVVQMEDSSGSFDSSVVNAADTEDSCSYGDAYGYNFAILNNNASVDNGTISGELQHSGAGEAVVRTIQLFPANESGMISPSESRGWMNFSSDHHGGVPEQTVVVAPRPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMNNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYEGELTSQADNDDIKQNLDLNLGIAPPSNSDVQMMNMHHSGSGLQVQRNWDDMPVDKSVMFEDSGSRSLNVQSSYGFPIASEHQPPIWSGTNYFPVCKERAIENRMESAPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSTTAADSQIHFPNITYLHPHFPTPATNSSPIPSFYCRS*