Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0412660 | XP_003625570.1 | 97.877 | 471 | 10 | 0 | 1 | 471 | 1 | 471 | 0.0 | 963 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0412660 | sp|B8AMA9|AP22_ORYSI | 50.594 | 421 | 167 | 11 | 1 | 412 | 2 | 390 | 2.41e-107 | 328 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0412660 | G7L1P7 | 97.877 | 471 | 10 | 0 | 1 | 471 | 1 | 471 | 0.0 | 963 |
Gene ID | Type | Classification |
---|---|---|
Msa0412660 | TF | AP2/ERF-AP2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0412660 | Msa0714930 | 0.811972 | 5.358459e-51 | -8.615850e-47 |
Msa0412660 | Msa0756940 | 0.836218 | 1.064173e-56 | -8.615850e-47 |
Msa0412660 | Msa0836510 | 0.828884 | 7.014084e-55 | -8.615850e-47 |
Msa0412660 | Msa1078810 | 0.872260 | 3.645486e-67 | -8.615850e-47 |
Msa0412660 | Msa1169640 | 0.859083 | 5.286892e-63 | -8.615850e-47 |
Msa0288270 | Msa0412660 | 0.805519 | 1.283639e-49 | -8.615850e-47 |
Msa0324430 | Msa0412660 | 0.803721 | 3.044676e-49 | -8.615850e-47 |
Msa0343200 | Msa0412660 | 0.835432 | 1.683751e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0412660 | MtrunA17_Chr7g0263581 | 97.877 | 471 | 10 | 0 | 1 | 471 | 1 | 471 | 0.0 | 963 |
Msa0412660 | MtrunA17_Chr4g0030191 | 54.273 | 433 | 135 | 13 | 1 | 408 | 1 | 395 | 1.82e-116 | 350 |
Msa0412660 | MtrunA17_Chr2g0325911 | 50.808 | 433 | 139 | 16 | 1 | 408 | 1 | 384 | 1.91e-103 | 316 |
Msa0412660 | MtrunA17_Chr5g0401891 | 83.770 | 191 | 31 | 0 | 124 | 314 | 137 | 327 | 2.99e-97 | 302 |
Msa0412660 | MtrunA17_Chr4g0053181 | 83.333 | 192 | 31 | 1 | 124 | 314 | 161 | 352 | 4.98e-95 | 296 |
Msa0412660 | MtrunA17_Chr7g0216601 | 50.000 | 202 | 87 | 3 | 136 | 323 | 65 | 266 | 4.69e-55 | 188 |
Msa0412660 | MtrunA17_Chr1g0170761 | 43.161 | 329 | 141 | 13 | 1 | 315 | 3 | 299 | 1.26e-54 | 187 |
Msa0412660 | MtrunA17_Chr4g0072291 | 49.744 | 195 | 86 | 4 | 110 | 293 | 134 | 327 | 1.15e-51 | 182 |
Msa0412660 | MtrunA17_Chr3g0126151 | 80.851 | 94 | 18 | 0 | 177 | 270 | 47 | 140 | 3.60e-50 | 167 |
Msa0412660 | MtrunA17_Chr4g0054351 | 52.047 | 171 | 71 | 3 | 136 | 295 | 310 | 480 | 7.49e-50 | 180 |
Msa0412660 | MtrunA17_Chr7g0249621 | 41.045 | 268 | 119 | 7 | 82 | 330 | 209 | 456 | 2.23e-49 | 179 |
Msa0412660 | MtrunA17_Chr4g0032631 | 52.071 | 169 | 70 | 3 | 136 | 293 | 163 | 331 | 3.30e-49 | 176 |
Msa0412660 | MtrunA17_Chr4g0032631 | 44.156 | 77 | 41 | 1 | 126 | 200 | 255 | 331 | 5.69e-12 | 67.8 |
Msa0412660 | MtrunA17_Chr4g0032631 | 42.857 | 91 | 43 | 2 | 215 | 296 | 150 | 240 | 7.48e-11 | 64.3 |
Msa0412660 | MtrunA17_Chr5g0400871 | 51.462 | 171 | 72 | 3 | 136 | 295 | 249 | 419 | 6.58e-49 | 176 |
Msa0412660 | MtrunA17_Chr5g0400871 | 40.000 | 95 | 48 | 2 | 211 | 296 | 232 | 326 | 8.21e-11 | 64.3 |
Msa0412660 | MtrunA17_Chr4g0002011 | 49.770 | 217 | 84 | 6 | 130 | 321 | 30 | 246 | 7.50e-49 | 170 |
Msa0412660 | MtrunA17_Chr8g0355191 | 44.545 | 220 | 105 | 5 | 113 | 323 | 31 | 242 | 2.70e-48 | 171 |
Msa0412660 | MtrunA17_Chr3g0135161 | 49.180 | 183 | 84 | 4 | 122 | 295 | 295 | 477 | 5.32e-47 | 172 |
Msa0412660 | MtrunA17_Chr8g0343851 | 51.807 | 166 | 72 | 3 | 136 | 293 | 248 | 413 | 7.12e-47 | 171 |
Msa0412660 | MtrunA17_Chr4g0073521 | 46.809 | 188 | 92 | 3 | 113 | 292 | 24 | 211 | 1.72e-46 | 164 |
Msa0412660 | MtrunA17_Chr1g0152161 | 50.595 | 168 | 75 | 3 | 136 | 295 | 312 | 479 | 2.97e-46 | 170 |
Msa0412660 | MtrunA17_Chr6g0452911 | 48.619 | 181 | 75 | 4 | 140 | 302 | 65 | 245 | 1.07e-45 | 163 |
Msa0412660 | MtrunA17_Chr2g0328971 | 49.704 | 169 | 71 | 4 | 136 | 293 | 167 | 332 | 1.33e-44 | 163 |
Msa0412660 | MtrunA17_Chr2g0328971 | 44.156 | 77 | 41 | 1 | 126 | 200 | 256 | 332 | 1.05e-11 | 67.0 |
Msa0412660 | MtrunA17_Chr8g0355181 | 47.236 | 199 | 93 | 4 | 119 | 307 | 37 | 233 | 1.45e-44 | 160 |
Msa0412660 | MtrunA17_Chr5g0412151 | 51.053 | 190 | 82 | 3 | 117 | 295 | 205 | 394 | 2.84e-44 | 162 |
Msa0412660 | MtrunA17_Chr8g0367311 | 56.716 | 134 | 57 | 1 | 163 | 295 | 19 | 152 | 8.17e-43 | 152 |
Msa0412660 | MtrunA17_Chr8g0367311 | 36.449 | 107 | 63 | 3 | 102 | 203 | 48 | 154 | 1.74e-11 | 64.3 |
Msa0412660 | MtrunA17_Chr8g0362541 | 46.341 | 205 | 87 | 4 | 111 | 292 | 43 | 247 | 1.73e-38 | 144 |
Msa0412660 | MtrunA17_Chr7g0257361 | 48.571 | 140 | 55 | 3 | 136 | 262 | 57 | 192 | 1.58e-25 | 108 |
Msa0412660 | MtrunA17_Chr2g0305821 | 44.697 | 132 | 64 | 3 | 116 | 238 | 25 | 156 | 2.71e-20 | 87.8 |
Msa0412660 | MtrunA17_Chr2g0305831 | 50.000 | 66 | 33 | 0 | 238 | 303 | 5 | 70 | 3.45e-13 | 68.6 |
Msa0412660 | MtrunA17_Chr8g0375031 | 53.125 | 64 | 27 | 2 | 139 | 200 | 124 | 186 | 7.78e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0412660 | AT2G28550.3 | 53.211 | 436 | 153 | 15 | 1 | 408 | 1 | 413 | 1.73e-108 | 330 |
Msa0412660 | AT4G36920.1 | 66.406 | 256 | 76 | 3 | 117 | 369 | 110 | 358 | 1.67e-96 | 298 |
Msa0412660 | AT4G36920.2 | 66.406 | 256 | 76 | 3 | 117 | 369 | 110 | 358 | 1.67e-96 | 298 |
Msa0412660 | AT2G28550.1 | 50.229 | 436 | 151 | 16 | 1 | 408 | 1 | 398 | 4.41e-94 | 292 |
Msa0412660 | AT5G67180.2 | 78.947 | 190 | 40 | 0 | 125 | 314 | 82 | 271 | 2.14e-90 | 277 |
Msa0412660 | AT5G67180.1 | 78.947 | 190 | 40 | 0 | 125 | 314 | 82 | 271 | 3.50e-90 | 279 |
Msa0412660 | AT5G67180.3 | 84.795 | 171 | 26 | 0 | 125 | 295 | 82 | 252 | 2.12e-88 | 271 |
Msa0412660 | AT2G28550.4 | 57.827 | 313 | 99 | 8 | 1 | 289 | 1 | 304 | 4.23e-86 | 268 |
Msa0412660 | AT2G28550.2 | 59.928 | 277 | 79 | 7 | 1 | 254 | 1 | 268 | 7.38e-76 | 239 |
Msa0412660 | AT2G28550.6 | 59.928 | 277 | 79 | 7 | 1 | 254 | 1 | 268 | 7.38e-76 | 239 |
Msa0412660 | AT5G67180.4 | 77.059 | 170 | 36 | 2 | 125 | 293 | 82 | 249 | 1.15e-73 | 233 |
Msa0412660 | AT5G60120.1 | 38.370 | 503 | 218 | 18 | 1 | 455 | 1 | 459 | 1.65e-70 | 232 |
Msa0412660 | AT5G60120.6 | 38.632 | 497 | 218 | 18 | 1 | 455 | 1 | 452 | 3.31e-70 | 231 |
Msa0412660 | AT5G60120.4 | 44.110 | 365 | 138 | 12 | 1 | 330 | 1 | 334 | 6.28e-67 | 220 |
Msa0412660 | AT5G60120.3 | 44.110 | 365 | 138 | 12 | 1 | 330 | 1 | 334 | 6.28e-67 | 220 |
Msa0412660 | AT5G60120.5 | 44.110 | 365 | 138 | 12 | 1 | 330 | 1 | 334 | 6.28e-67 | 220 |
Msa0412660 | AT5G60120.2 | 37.333 | 525 | 215 | 20 | 1 | 455 | 1 | 481 | 9.44e-67 | 223 |
Msa0412660 | AT2G28550.5 | 52.713 | 258 | 88 | 9 | 156 | 408 | 4 | 232 | 8.38e-64 | 208 |
Msa0412660 | AT1G72570.1 | 48.958 | 192 | 85 | 4 | 115 | 293 | 197 | 388 | 2.17e-51 | 179 |
Msa0412660 | AT4G37750.1 | 43.460 | 237 | 107 | 4 | 114 | 323 | 258 | 494 | 5.00e-51 | 182 |
Msa0412660 | AT5G57390.2 | 48.469 | 196 | 89 | 4 | 109 | 293 | 56 | 250 | 1.24e-50 | 178 |
Msa0412660 | AT1G51190.1 | 44.206 | 233 | 103 | 6 | 72 | 293 | 139 | 355 | 2.12e-50 | 180 |
Msa0412660 | AT5G57390.1 | 48.469 | 196 | 89 | 4 | 109 | 293 | 174 | 368 | 4.86e-50 | 179 |
Msa0412660 | AT5G17430.2 | 48.438 | 192 | 87 | 4 | 112 | 292 | 122 | 312 | 1.22e-49 | 177 |
Msa0412660 | AT5G17430.1 | 48.438 | 192 | 87 | 4 | 112 | 292 | 184 | 374 | 2.09e-49 | 178 |
Msa0412660 | AT2G39250.1 | 39.701 | 335 | 123 | 11 | 1 | 326 | 1 | 265 | 3.14e-49 | 171 |
Msa0412660 | AT3G20840.1 | 50.888 | 169 | 72 | 3 | 136 | 293 | 178 | 346 | 7.45e-49 | 176 |
Msa0412660 | AT3G20840.1 | 44.156 | 77 | 41 | 1 | 126 | 200 | 270 | 346 | 8.78e-12 | 67.8 |
Msa0412660 | AT2G39250.2 | 46.473 | 241 | 82 | 6 | 1 | 233 | 1 | 202 | 3.70e-48 | 166 |
Msa0412660 | AT3G54320.3 | 46.829 | 205 | 84 | 4 | 120 | 299 | 32 | 236 | 2.26e-44 | 161 |
Msa0412660 | AT5G65510.4 | 54.386 | 171 | 67 | 3 | 136 | 295 | 170 | 340 | 2.66e-44 | 161 |
Msa0412660 | AT3G54320.1 | 46.602 | 206 | 85 | 4 | 120 | 300 | 32 | 237 | 2.87e-44 | 161 |
Msa0412660 | AT5G65510.2 | 54.386 | 171 | 67 | 3 | 136 | 295 | 228 | 398 | 3.84e-44 | 162 |
Msa0412660 | AT5G65510.1 | 54.386 | 171 | 67 | 3 | 136 | 295 | 228 | 398 | 3.84e-44 | 162 |
Msa0412660 | AT3G54990.2 | 66.443 | 149 | 39 | 2 | 97 | 245 | 91 | 228 | 8.17e-44 | 154 |
Msa0412660 | AT3G54990.1 | 59.016 | 183 | 50 | 3 | 97 | 279 | 91 | 248 | 1.30e-43 | 157 |
Msa0412660 | AT5G10510.7 | 52.047 | 171 | 71 | 3 | 136 | 295 | 227 | 397 | 3.27e-42 | 157 |
Msa0412660 | AT5G10510.5 | 52.047 | 171 | 71 | 3 | 136 | 295 | 227 | 397 | 3.27e-42 | 157 |
Msa0412660 | AT5G10510.6 | 52.047 | 171 | 71 | 3 | 136 | 295 | 265 | 435 | 4.00e-42 | 158 |
Msa0412660 | AT5G10510.4 | 52.047 | 171 | 71 | 3 | 136 | 295 | 265 | 435 | 4.00e-42 | 158 |
Msa0412660 | AT5G10510.1 | 52.047 | 171 | 71 | 3 | 136 | 295 | 250 | 420 | 4.36e-42 | 157 |
Msa0412660 | AT5G65510.3 | 53.191 | 141 | 55 | 3 | 136 | 265 | 170 | 310 | 2.53e-40 | 147 |
Msa0412660 | AT1G79700.2 | 53.448 | 174 | 70 | 2 | 130 | 292 | 43 | 216 | 4.35e-40 | 147 |
Msa0412660 | AT1G16060.1 | 50.000 | 188 | 83 | 2 | 116 | 292 | 35 | 222 | 3.54e-39 | 145 |
Msa0412660 | AT5G10510.2 | 50.000 | 168 | 76 | 3 | 136 | 295 | 227 | 394 | 4.33e-38 | 146 |
Msa0412660 | AT5G10510.3 | 45.026 | 191 | 74 | 4 | 136 | 295 | 265 | 455 | 1.90e-35 | 139 |
Msa0412660 | AT1G79700.1 | 50.575 | 174 | 65 | 3 | 130 | 292 | 43 | 206 | 8.44e-33 | 127 |
Msa0412660 | AT3G54320.4 | 50.725 | 138 | 67 | 1 | 163 | 299 | 33 | 170 | 1.49e-31 | 124 |
Msa0412660 | AT3G54320.5 | 50.725 | 138 | 67 | 1 | 163 | 299 | 33 | 170 | 1.49e-31 | 124 |
Msa0412660 | AT1G79700.3 | 54.412 | 136 | 61 | 1 | 158 | 292 | 5 | 140 | 1.13e-28 | 113 |
Msa0412660 | AT1G16060.3 | 54.412 | 136 | 61 | 1 | 158 | 292 | 17 | 152 | 6.88e-28 | 112 |
Msa0412660 | AT1G79700.4 | 54.264 | 129 | 58 | 1 | 165 | 292 | 6 | 134 | 1.46e-26 | 107 |
Msa0412660 | AT2G41710.1 | 48.855 | 131 | 53 | 2 | 136 | 256 | 67 | 193 | 5.11e-25 | 107 |
Msa0412660 | AT2G41710.4 | 48.855 | 131 | 53 | 2 | 136 | 256 | 67 | 193 | 6.99e-25 | 107 |
Msa0412660 | AT2G41710.2 | 47.059 | 136 | 53 | 3 | 136 | 256 | 67 | 198 | 7.41e-23 | 100 |
Msa0412660 | AT2G41710.3 | 46.281 | 121 | 51 | 2 | 146 | 256 | 112 | 228 | 3.51e-20 | 93.2 |
Msa0412660 | AT3G54320.2 | 54.167 | 96 | 43 | 1 | 206 | 300 | 1 | 96 | 3.46e-19 | 88.2 |
Msa0412660 | AT1G16060.2 | 55.682 | 88 | 38 | 1 | 206 | 292 | 1 | 88 | 8.46e-18 | 82.4 |
Msa0412660 | AT1G16060.4 | 55.682 | 88 | 38 | 1 | 206 | 292 | 1 | 88 | 8.46e-18 | 82.4 |
Msa0412660 | AT1G16060.6 | 55.682 | 88 | 38 | 1 | 206 | 292 | 1 | 88 | 8.46e-18 | 82.4 |
Msa0412660 | AT1G16060.5 | 55.682 | 88 | 38 | 1 | 206 | 292 | 1 | 88 | 8.46e-18 | 82.4 |
Msa0412660 | AT3G25730.1 | 38.947 | 95 | 54 | 2 | 128 | 222 | 53 | 143 | 2.56e-12 | 68.2 |
Msa0412660 | AT1G68840.2 | 37.383 | 107 | 63 | 2 | 116 | 222 | 44 | 146 | 1.29e-11 | 66.2 |
Msa0412660 | AT1G68840.1 | 37.383 | 107 | 63 | 2 | 116 | 222 | 44 | 146 | 1.29e-11 | 66.2 |
Msa0412660 | AT2G47520.1 | 44.578 | 83 | 43 | 2 | 122 | 202 | 32 | 113 | 1.57e-11 | 63.2 |
Find 166 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGAGCTGCCATGCCCAATT+TGG | 0.214682 | 3_2:+56116784 | None:intergenic |
ATCATTCCCGATTCGTTTGC+TGG | 0.249662 | 3_2:+56118980 | None:intergenic |
CTCAATGTTCAGTCATCTTA+TGG | 0.249805 | 3_2:-56117041 | Msa0412660:CDS |
GTTTGCAAGTTCAGCGTAAC+TGG | 0.251291 | 3_2:-56117243 | Msa0412660:CDS |
AATCTGCTCCCGTTCCAAAT+TGG | 0.265423 | 3_2:-56116798 | Msa0412660:CDS |
CTCCAAAGTCCATATAATAA+TGG | 0.282974 | 3_2:-56116766 | Msa0412660:CDS |
GACGTTGGGAATCGCATATT+TGG | 0.285512 | 3_2:-56118787 | Msa0412660:intron |
AGTCTTTGTATCCAAGGTTT+AGG | 0.309744 | 3_2:-56116522 | Msa0412660:three_prime_UTR |
AAAGTTGACCCATTATTATA+TGG | 0.312812 | 3_2:+56116757 | None:intergenic |
GCTCGTATGGGACAGTTTCT+TGG | 0.324940 | 3_2:-56117987 | Msa0412660:CDS |
GGAAGCGTTGTTGTTGAGTA+TGG | 0.328168 | 3_2:+56119081 | None:intergenic |
ACGATTCAGTTATGAAGATT+TGG | 0.335301 | 3_2:+56119277 | None:intergenic |
TAGAAAAGGAATGAATTAAA+AGG | 0.336131 | 3_2:-56119410 | Msa0412660:five_prime_UTR |
ATATAACCCACAAATAATAT+TGG | 0.339629 | 3_2:+56116188 | None:intergenic |
ATCTGCTCCCGTTCCAAATT+GGG | 0.340346 | 3_2:-56116797 | Msa0412660:CDS |
CGTTGATAGTTTGAGGACTC+TGG | 0.357542 | 3_2:-56117074 | Msa0412660:intron |
AATGACATTATATTGCTATA+AGG | 0.366223 | 3_2:-56119445 | Msa0412660:five_prime_UTR |
AAGAAAATAGGAATATTTAA+AGG | 0.373877 | 3_2:+56116422 | None:intergenic |
ACCCATTATTATATGGACTT+TGG | 0.377342 | 3_2:+56116764 | None:intergenic |
TTATGTAGGTATATATATCT+TGG | 0.380122 | 3_2:-56117825 | Msa0412660:intron |
TTCTCTGCTGCAGCATCATC+AGG | 0.380972 | 3_2:-56116721 | Msa0412660:CDS |
CTGAGCATCAACCTCCAATC+TGG | 0.386362 | 3_2:-56117004 | Msa0412660:CDS |
AAAGTAGGAATTTAATTGCT+TGG | 0.388624 | 3_2:-56116471 | Msa0412660:three_prime_UTR |
ACCATTACACTCTTATCAAC+AGG | 0.390876 | 3_2:+56117211 | None:intergenic |
GTTACTTTCTACCGGAGAAC+TGG | 0.391369 | 3_2:-56118809 | Msa0412660:CDS |
TCCAAAGTCCATATAATAAT+GGG | 0.393361 | 3_2:-56116765 | Msa0412660:CDS |
TTCTTCACCGGCTGAGGTCG+TGG | 0.400221 | 3_2:+56118875 | None:intergenic |
GATGCTGCAGCAGAGAAATT+AGG | 0.402479 | 3_2:+56116727 | None:intergenic |
TAATTACTTTCCCGTGTGTA+AGG | 0.413461 | 3_2:-56116973 | Msa0412660:intron |
CTCGTATGGGACAGTTTCTT+GGG | 0.413776 | 3_2:-56117986 | Msa0412660:CDS |
TATGTAGGTATATATATCTT+GGG | 0.414146 | 3_2:-56117824 | Msa0412660:intron |
AATATGATTATCAAACTTGT+AGG | 0.417027 | 3_2:-56116499 | Msa0412660:three_prime_UTR |
TGCCATGCCCAATTTGGAAC+GGG | 0.426003 | 3_2:+56116790 | None:intergenic |
GAATTGTAGCTTTATACTCT+AGG | 0.434066 | 3_2:+56116562 | None:intergenic |
ACTGAAAATATTTGAGATGA+TGG | 0.440420 | 3_2:-56116274 | Msa0412660:three_prime_UTR |
GGGTGGAGGTATGTTATGTT+TGG | 0.445569 | 3_2:+56116658 | None:intergenic |
AGTTTACCATGCCTTGCGGC+AGG | 0.447162 | 3_2:+56116383 | None:intergenic |
ATGATAACAAAGGAAGGAAA+TGG | 0.447543 | 3_2:+56116319 | None:intergenic |
ATTTGAACATCAGAGTTAGA+AGG | 0.449742 | 3_2:+56117292 | None:intergenic |
TTAAATTCCAATATTATTTG+TGG | 0.449904 | 3_2:-56116195 | Msa0412660:three_prime_UTR |
TAAATTCCAATATTATTTGT+GGG | 0.457494 | 3_2:-56116194 | Msa0412660:three_prime_UTR |
GCCGGTGAAGAAGAGTCGTC+GGG | 0.459593 | 3_2:-56118864 | Msa0412660:CDS |
TGGACGATGGGAAGCTCGTA+TGG | 0.459668 | 3_2:-56118000 | Msa0412660:CDS |
ATAATCATATTCCTAAACCT+TGG | 0.459978 | 3_2:+56116511 | None:intergenic |
CCTGCAGTAGAAAGAGGGTA+TGG | 0.464065 | 3_2:+56116603 | None:intergenic |
TACAACAGCTTCGCCGGCGC+CGG | 0.464183 | 3_2:+56119021 | None:intergenic |
GCAGAATCTTGATCTGAACT+TGG | 0.465184 | 3_2:-56117326 | Msa0412660:CDS |
CTATCCGCAGCTGTTGTTGA+AGG | 0.465186 | 3_2:+56116694 | None:intergenic |
GGTAAGAAGAGGAATAGAAA+AGG | 0.466484 | 3_2:-56119424 | Msa0412660:five_prime_UTR |
AAGAGCAATAGAGAATAGGA+TGG | 0.477231 | 3_2:-56116821 | Msa0412660:CDS |
ACTCTCCTCCGTCGTTCAGA+TGG | 0.481608 | 3_2:-56119197 | Msa0412660:CDS |
CTACCGGAGAACTGGACGTT+GGG | 0.483697 | 3_2:-56118801 | Msa0412660:CDS |
AGGAAAGAGCAATAGAGAAT+AGG | 0.487980 | 3_2:-56116825 | Msa0412660:CDS |
CCATACCCTCTTTCTACTGC+AGG | 0.495357 | 3_2:-56116603 | Msa0412660:CDS |
TTTGAGGCTAGTTCTTATGA+AGG | 0.495376 | 3_2:-56117585 | Msa0412660:CDS |
ACTGAAGATTCATGCTCTTA+CGG | 0.496241 | 3_2:-56119127 | Msa0412660:CDS |
TAGTACCATCGTTATCAGCC+TGG | 0.496630 | 3_2:+56117550 | None:intergenic |
TGCTCTTACGGCGATGCATA+CGG | 0.502837 | 3_2:-56119115 | Msa0412660:CDS |
TTTATGAGATGATTCTAATG+AGG | 0.504275 | 3_2:-56116345 | Msa0412660:three_prime_UTR |
ACGTCTAGTCTTTGTATCCA+AGG | 0.505412 | 3_2:-56116528 | Msa0412660:three_prime_UTR |
TGTCCGTACAACAGCTTCGC+CGG | 0.508835 | 3_2:+56119015 | None:intergenic |
GTAGAAAGAGGGTATGGGGC+TGG | 0.510625 | 3_2:+56116609 | None:intergenic |
ATCGTGGTGTTACTTTCTAC+CGG | 0.518398 | 3_2:-56118817 | Msa0412660:CDS |
TAATTAGTACCACTCCAGAT+TGG | 0.520137 | 3_2:+56116990 | None:intergenic |
TGTTGCTCCACGACCTCAGC+CGG | 0.520275 | 3_2:-56118882 | Msa0412660:CDS |
CGACTCTTCTTCACCGGCTG+AGG | 0.520783 | 3_2:+56118869 | None:intergenic |
AACATGCACCACAGTGGAAG+TGG | 0.520906 | 3_2:-56117265 | Msa0412660:CDS |
ATTCCCAACGTCCAGTTCTC+CGG | 0.521427 | 3_2:+56118798 | None:intergenic |
ATGGGGCTGGAGTTAGTCGC+TGG | 0.523340 | 3_2:+56116622 | None:intergenic |
TGAAGGAGAGTTAACTTCCC+AGG | 0.523464 | 3_2:-56117568 | Msa0412660:CDS |
ATTCAGTTATGAAGATTTGG+AGG | 0.523564 | 3_2:+56119280 | None:intergenic |
GTCGCTGGAGTAGGAAAATG+AGG | 0.525924 | 3_2:+56116637 | None:intergenic |
GAGCTTCAACACTCCGGCGC+CGG | 0.528911 | 3_2:-56119034 | Msa0412660:CDS |
CGGTACGCCACCGTGATGAT+CGG | 0.529586 | 3_2:+56118919 | None:intergenic |
AGGTTGATGCTCAGATGCTA+TGG | 0.530023 | 3_2:+56117013 | None:intergenic |
TGTGGAAAACAAGTATACTT+AGG | 0.532079 | 3_2:-56118649 | Msa0412660:intron |
CTGCTATAAAATGCAATGGA+AGG | 0.535486 | 3_2:-56117623 | Msa0412660:CDS |
CTGCAGTAGAAAGAGGGTAT+GGG | 0.539113 | 3_2:+56116604 | None:intergenic |
CGATCATCACGGTGGCGTAC+CGG | 0.539554 | 3_2:-56118918 | Msa0412660:CDS |
GTGAAAATGATAACAAAGGA+AGG | 0.539785 | 3_2:+56116313 | None:intergenic |
CCCCGACGACTCTTCTTCAC+CGG | 0.545486 | 3_2:+56118863 | None:intergenic |
CTGGAGTTAGTCGCTGGAGT+AGG | 0.547085 | 3_2:+56116628 | None:intergenic |
AAACTCAAACCTCACAATGT+TGG | 0.548139 | 3_2:-56119251 | Msa0412660:exon |
GCCGGAGTGTTGAAGCTCAC+CGG | 0.549298 | 3_2:+56119039 | None:intergenic |
GTTGATAGTTTGAGGACTCT+GGG | 0.550553 | 3_2:-56117073 | Msa0412660:intron |
GACAGAGTACTGGTTTCTCA+AGG | 0.553049 | 3_2:-56118061 | Msa0412660:CDS |
GTTTACCATGCCTTGCGGCA+GGG | 0.553482 | 3_2:+56116384 | None:intergenic |
TCAGCTCCTGCAGTAGAAAG+AGG | 0.553716 | 3_2:+56116597 | None:intergenic |
TGATTACAGAGCGTATGATA+AGG | 0.555672 | 3_2:-56117646 | Msa0412660:intron |
CTCCCGTTCCAAATTGGGCA+TGG | 0.556092 | 3_2:-56116792 | Msa0412660:CDS |
TTATGATGAAGATATAAAGC+AGG | 0.557521 | 3_2:-56118314 | Msa0412660:intron |
GCGCCGGCGAAGCTGTTGTA+CGG | 0.557964 | 3_2:-56119018 | Msa0412660:CDS |
TACTGCGAGCTTCGTGACCT+CGG | 0.565421 | 3_2:+56118839 | None:intergenic |
GATTGAGATCCAACATTGTG+AGG | 0.565610 | 3_2:+56119242 | None:intergenic |
AAAATCCCTGCCGCAAGGCA+TGG | 0.567862 | 3_2:-56116389 | Msa0412660:three_prime_UTR |
ATCTGAACGACGGAGGAGAG+TGG | 0.568541 | 3_2:+56119199 | None:intergenic |
AACTTGTAGGGTCTAAAAGT+AGG | 0.569140 | 3_2:-56116486 | Msa0412660:three_prime_UTR |
ATTCTGCGTAGACAGAGTAC+TGG | 0.571541 | 3_2:-56118071 | Msa0412660:CDS |
GAGTAGGAAAATGAGGGTGG+AGG | 0.571882 | 3_2:+56116644 | None:intergenic |
AGCCGGTGAAGAAGAGTCGT+CGG | 0.574425 | 3_2:-56118865 | Msa0412660:CDS |
GTTCAGATGGAAGATTCATC+CGG | 0.575771 | 3_2:-56119184 | Msa0412660:CDS |
CGAGCTGCGATAAAGTTTCG+TGG | 0.575785 | 3_2:-56118370 | Msa0412660:CDS |
TGCAGTAGAAAGAGGGTATG+GGG | 0.576798 | 3_2:+56116605 | None:intergenic |
TATCCGCAGCTGTTGTTGAA+GGG | 0.577107 | 3_2:+56116695 | None:intergenic |
TGCTATAAAATGCAATGGAA+GGG | 0.577688 | 3_2:-56117622 | Msa0412660:CDS |
CGCCTTCTGAGAGTAGAGGA+TGG | 0.578820 | 3_2:-56118955 | Msa0412660:CDS |
GTCGACAACGGTACTATCTC+CGG | 0.580552 | 3_2:-56119058 | Msa0412660:CDS |
TTACCTTGCCGCAGCATGCG+CGG | 0.580853 | 3_2:+56118501 | None:intergenic |
TTCAGTTATGAAGATTTGGA+GGG | 0.581412 | 3_2:+56119281 | None:intergenic |
TCTACCGGAGAACTGGACGT+TGG | 0.583316 | 3_2:-56118802 | Msa0412660:CDS |
ATACCGCGCATGCTGCGGCA+AGG | 0.583419 | 3_2:-56118504 | Msa0412660:intron |
GCAACAACAACAGTCTGCTC+CGG | 0.583622 | 3_2:+56118899 | None:intergenic |
CAGAATCTTGATCTGAACTT+GGG | 0.584312 | 3_2:-56117325 | Msa0412660:CDS |
AAGGCTGCTATAAAATGCAA+TGG | 0.584344 | 3_2:-56117627 | Msa0412660:CDS |
TTAGTACCACTCCAGATTGG+AGG | 0.585536 | 3_2:+56116993 | None:intergenic |
ATATGATTATCAAACTTGTA+GGG | 0.585991 | 3_2:-56116498 | Msa0412660:three_prime_UTR |
GAATGAAAGATAGAGAGAGA+AGG | 0.588114 | 3_2:+56119335 | None:intergenic |
GACGGAGGAATCAAAGCTAC+CGG | 0.588222 | 3_2:+56119165 | None:intergenic |
TTTGCAAGTTCAGCGTAACT+GGG | 0.588454 | 3_2:-56117242 | Msa0412660:CDS |
TCTGCATAAATGTGGACGAT+GGG | 0.589018 | 3_2:-56118012 | Msa0412660:CDS |
AGTACCATCGTTATCAGCCT+GGG | 0.589962 | 3_2:+56117551 | None:intergenic |
AGAAGAGTCGTCGGGGACCG+AGG | 0.591121 | 3_2:-56118856 | Msa0412660:CDS |
ATCCATCCTCTACTCTCAGA+AGG | 0.594152 | 3_2:+56118953 | None:intergenic |
CTGCCATGCCCAATTTGGAA+CGG | 0.595613 | 3_2:+56116789 | None:intergenic |
GACGGAGGAGAGTGGAAGAG+AGG | 0.597615 | 3_2:+56119207 | None:intergenic |
ATAGCGAGCTAGATGCTGCA+AGG | 0.598807 | 3_2:-56117794 | Msa0412660:intron |
ACAGAGTACTGGTTTCTCAA+GGG | 0.599902 | 3_2:-56118060 | Msa0412660:CDS |
ATTTGATACCGCGCATGCTG+CGG | 0.600999 | 3_2:-56118509 | Msa0412660:CDS |
CAGAGTACTGGTTTCTCAAG+GGG | 0.605158 | 3_2:-56118059 | Msa0412660:CDS |
TATTGCTATAAGGTAAGAAG+AGG | 0.605217 | 3_2:-56119435 | Msa0412660:five_prime_UTR |
AAAGTTTCGTGGCGTCGATG+CGG | 0.606313 | 3_2:-56118359 | Msa0412660:CDS |
GGACGATGGGAAGCTCGTAT+GGG | 0.611195 | 3_2:-56117999 | Msa0412660:CDS |
CAGCTCCTGCAGTAGAAAGA+GGG | 0.613397 | 3_2:+56116598 | None:intergenic |
ATTAGTATTCACCTTACACA+CGG | 0.613966 | 3_2:+56116962 | None:intergenic |
TGAACATCAGAGTTAGAAGG+AGG | 0.614498 | 3_2:+56117295 | None:intergenic |
GCCTGTTGATAAGAGTGTAA+TGG | 0.619307 | 3_2:-56117212 | Msa0412660:intron |
AATTTCTCGTCCGATCATCA+CGG | 0.619679 | 3_2:-56118929 | Msa0412660:CDS |
AACAACGCTTCCGTCGACAA+CGG | 0.620133 | 3_2:-56119070 | Msa0412660:CDS |
CTAGAGTTTACCATGCCTTG+CGG | 0.621770 | 3_2:+56116379 | None:intergenic |
GGAGTTACTCTGCATAAATG+TGG | 0.624873 | 3_2:-56118020 | Msa0412660:CDS |
CTCTGCATAAATGTGGACGA+TGG | 0.629073 | 3_2:-56118013 | Msa0412660:CDS |
GAGAGTGAAAATGATAACAA+AGG | 0.632471 | 3_2:+56116309 | None:intergenic |
ATCTCGCCTTCTGAGAGTAG+AGG | 0.632485 | 3_2:-56118959 | Msa0412660:CDS |
TCCGGTGAGCTTCAACACTC+CGG | 0.632556 | 3_2:-56119040 | Msa0412660:CDS |
GTAGATGAATAACTTTACAA+AGG | 0.633971 | 3_2:-56118108 | Msa0412660:intron |
TCACGAAGCTCGCAGTATCG+TGG | 0.635514 | 3_2:-56118833 | Msa0412660:CDS |
AGAGCATGAATCTTCAGTGT+CGG | 0.641138 | 3_2:+56119132 | None:intergenic |
GGTTGATGCTCAGATGCTAT+GGG | 0.641889 | 3_2:+56117014 | None:intergenic |
GTCGGCAGCGTTGACGACGG+AGG | 0.642992 | 3_2:+56119150 | None:intergenic |
GCTGCAGCAGAGAAATTAGG+TGG | 0.656992 | 3_2:+56116730 | None:intergenic |
AATATTTGAGATGATGGTGA+AGG | 0.660564 | 3_2:-56116268 | Msa0412660:three_prime_UTR |
CTGGAGTAGGAAAATGAGGG+TGG | 0.661562 | 3_2:+56116641 | None:intergenic |
CATCAACCTCCAATCTGGAG+TGG | 0.662314 | 3_2:-56116999 | Msa0412660:CDS |
GGAGATAGTACCGTTGTCGA+CGG | 0.663908 | 3_2:+56119060 | None:intergenic |
ATCTTCCATCTGAACGACGG+AGG | 0.664445 | 3_2:+56119192 | None:intergenic |
AGTGTCGGCAGCGTTGACGA+CGG | 0.674336 | 3_2:+56119147 | None:intergenic |
TTAGTATTCACCTTACACAC+GGG | 0.680796 | 3_2:+56116963 | None:intergenic |
AGGGGAAGTTCTAAATACAG+AGG | 0.681558 | 3_2:-56118041 | Msa0412660:CDS |
ATTCCCTTCAACAACAGCTG+CGG | 0.681754 | 3_2:-56116698 | Msa0412660:CDS |
TGAATCTTCCATCTGAACGA+CGG | 0.693422 | 3_2:+56119189 | None:intergenic |
TCGCTGGAGTAGGAAAATGA+GGG | 0.701704 | 3_2:+56116638 | None:intergenic |
CCGGTGAAGAAGAGTCGTCG+GGG | 0.715698 | 3_2:-56118863 | Msa0412660:CDS |
TTCTCGTCCGATCATCACGG+TGG | 0.718908 | 3_2:-56118926 | Msa0412660:CDS |
ACTTCCCAGGCTGATAACGA+TGG | 0.728400 | 3_2:-56117555 | Msa0412660:intron |
ATGATGAACATGCACCACAG+TGG | 0.729813 | 3_2:-56117271 | Msa0412660:CDS |
CTTGCAAACCACTTCCACTG+TGG | 0.732557 | 3_2:+56117257 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAATCAAATTAAACTAA+AGG | + | chr3_2:56117698-56117717 | None:intergenic | 10.0% |
!!! | TATTTAGTTCTTAATTATAT+TGG | - | chr3_2:56117766-56117785 | Msa0412660:intron | 10.0% |
!! | AAAGATCAAAATCTAAAAAA+AGG | + | chr3_2:56117093-56117112 | None:intergenic | 15.0% |
!!! | TCTTTGAAATTTAATTTTTC+AGG | - | chr3_2:56117108-56117127 | Msa0412660:intron | 15.0% |
!!! | TAAATATTGAATGTTTTTCA+TGG | - | chr3_2:56117205-56117224 | Msa0412660:intron | 15.0% |
!! | TATAATTAAGAACTAAATAC+TGG | + | chr3_2:56117765-56117784 | None:intergenic | 15.0% |
!!! | AAATGCCTAATTAAATATTT+TGG | - | chr3_2:56117912-56117931 | Msa0412660:intron | 15.0% |
!! | ATGATCCAAAATATTTAATT+AGG | + | chr3_2:56117920-56117939 | None:intergenic | 15.0% |
!! | TGATTATAAAACCAAAAAAA+AGG | + | chr3_2:56118140-56118159 | None:intergenic | 15.0% |
!! | AAGAAAATAGGAATATTTAA+AGG | + | chr3_2:56119224-56119243 | None:intergenic | 15.0% |
!! | TTAAATTCCAATATTATTTG+TGG | - | chr3_2:56119448-56119467 | Msa0412660:five_prime_UTR | 15.0% |
!! | AATGACATTATATTGCTATA+AGG | - | chr3_2:56116198-56116217 | Msa0412660:three_prime_UTR | 20.0% |
!! | TAGAAAAGGAATGAATTAAA+AGG | - | chr3_2:56116233-56116252 | Msa0412660:three_prime_UTR | 20.0% |
!!! | TTGAAATTTAATTTTTCAGG+TGG | - | chr3_2:56117111-56117130 | Msa0412660:intron | 20.0% |
!! | TTATGTAGGTATATATATCT+TGG | - | chr3_2:56117818-56117837 | Msa0412660:CDS | 20.0% |
!! | TATGTAGGTATATATATCTT+GGG | - | chr3_2:56117819-56117838 | Msa0412660:CDS | 20.0% |
!! | ATTTATCAATCATATATAGC+AGG | - | chr3_2:56117877-56117896 | Msa0412660:intron | 20.0% |
!! | ATTATTTGTGTTCTATTTAC+AGG | - | chr3_2:56118798-56118817 | Msa0412660:CDS | 20.0% |
!! | AATATGATTATCAAACTTGT+AGG | - | chr3_2:56119144-56119163 | Msa0412660:CDS | 20.0% |
!! | ATATGATTATCAAACTTGTA+GGG | - | chr3_2:56119145-56119164 | Msa0412660:CDS | 20.0% |
! | TTATGATGAAGATATAAAGC+AGG | - | chr3_2:56117329-56117348 | Msa0412660:CDS | 25.0% |
! | GTAGATGAATAACTTTACAA+AGG | - | chr3_2:56117535-56117554 | Msa0412660:intron | 25.0% |
!!! | AATCACAAATCAGTCATTTT+AGG | + | chr3_2:56117728-56117747 | None:intergenic | 25.0% |
!!! | AAGAACTAAATACTGGTTTA+TGG | + | chr3_2:56117758-56117777 | None:intergenic | 25.0% |
! | AGTTCTTAATTATATTGGTC+TGG | - | chr3_2:56117771-56117790 | Msa0412660:intron | 25.0% |
!! | GTTCTTAATTATATTGGTCT+GGG | - | chr3_2:56117772-56117791 | Msa0412660:intron | 25.0% |
!! | GTTGTTAATTATATTGGTCT+GGG | - | chr3_2:56117794-56117813 | Msa0412660:intron | 25.0% |
! | AGGTTAATTGACATACTTTA+AGG | + | chr3_2:56118224-56118243 | None:intergenic | 25.0% |
! | TTAACCTTTACTATTAAGAC+TGG | - | chr3_2:56118237-56118256 | Msa0412660:intron | 25.0% |
! | TCCAAAGTCCATATAATAAT+GGG | - | chr3_2:56118878-56118897 | Msa0412660:CDS | 25.0% |
! | AAAGTTGACCCATTATTATA+TGG | + | chr3_2:56118889-56118908 | None:intergenic | 25.0% |
! | ATAATCATATTCCTAAACCT+TGG | + | chr3_2:56119135-56119154 | None:intergenic | 25.0% |
! | AAAGTAGGAATTTAATTGCT+TGG | - | chr3_2:56119172-56119191 | Msa0412660:CDS | 25.0% |
!!! | TTTTTTACACGGAAGAAAAT+AGG | + | chr3_2:56119236-56119255 | None:intergenic | 25.0% |
! | TTTATGAGATGATTCTAATG+AGG | - | chr3_2:56119298-56119317 | Msa0412660:five_prime_UTR | 25.0% |
!! | TATTTTCAGTAAGAAATGCA+TGG | + | chr3_2:56119359-56119378 | None:intergenic | 25.0% |
!! | ACTGAAAATATTTGAGATGA+TGG | - | chr3_2:56119369-56119388 | Msa0412660:five_prime_UTR | 25.0% |
TATTGCTATAAGGTAAGAAG+AGG | - | chr3_2:56116208-56116227 | Msa0412660:three_prime_UTR | 30.0% | |
!! | GAAGTGAAGCATTTTCATTT+TGG | - | chr3_2:56116283-56116302 | Msa0412660:three_prime_UTR | 30.0% |
TTCAGTTATGAAGATTTGGA+GGG | + | chr3_2:56116365-56116384 | None:intergenic | 30.0% | |
ATTCAGTTATGAAGATTTGG+AGG | + | chr3_2:56116366-56116385 | None:intergenic | 30.0% | |
ACGATTCAGTTATGAAGATT+TGG | + | chr3_2:56116369-56116388 | None:intergenic | 30.0% | |
!! | TCTGTTTTCGTTTTTCTGTA+GGG | - | chr3_2:56116969-56116988 | Msa0412660:intron | 30.0% |
TGTGGAAAACAAGTATACTT+AGG | - | chr3_2:56116994-56117013 | Msa0412660:CDS | 30.0% | |
GTCTGGGTTGTTAATTATAT+TGG | - | chr3_2:56117788-56117807 | Msa0412660:intron | 30.0% | |
GGTTGTTAATTATATTGGTC+TGG | - | chr3_2:56117793-56117812 | Msa0412660:intron | 30.0% | |
! | TACATGTTGTGTTATTGACT+TGG | - | chr3_2:56117962-56117981 | Msa0412660:intron | 30.0% |
TGCTATAAAATGCAATGGAA+GGG | - | chr3_2:56118021-56118040 | Msa0412660:CDS | 30.0% | |
AGAGTGAGTGATAGTTTATA+TGG | + | chr3_2:56118187-56118206 | None:intergenic | 30.0% | |
ATCACCAGTCTTAATAGTAA+AGG | + | chr3_2:56118244-56118263 | None:intergenic | 30.0% | |
ATTTGAACATCAGAGTTAGA+AGG | + | chr3_2:56118354-56118373 | None:intergenic | 30.0% | |
! | TTGATAAGAGTGTAATGGTA+AGG | - | chr3_2:56118436-56118455 | Msa0412660:intron | 30.0% |
ATTAGTATTCACCTTACACA+CGG | + | chr3_2:56118684-56118703 | None:intergenic | 30.0% | |
ATATCTTAAGAATCTTCTGC+TGG | - | chr3_2:56118763-56118782 | Msa0412660:intron | 30.0% | |
CTCCAAAGTCCATATAATAA+TGG | - | chr3_2:56118877-56118896 | Msa0412660:CDS | 30.0% | |
ACCCATTATTATATGGACTT+TGG | + | chr3_2:56118882-56118901 | None:intergenic | 30.0% | |
!! | GAATTGTAGCTTTATACTCT+AGG | + | chr3_2:56119084-56119103 | None:intergenic | 30.0% |
ATGATAACAAAGGAAGGAAA+TGG | + | chr3_2:56119327-56119346 | None:intergenic | 30.0% | |
GTGAAAATGATAACAAAGGA+AGG | + | chr3_2:56119333-56119352 | None:intergenic | 30.0% | |
GAGAGTGAAAATGATAACAA+AGG | + | chr3_2:56119337-56119356 | None:intergenic | 30.0% | |
! | AATATTTGAGATGATGGTGA+AGG | - | chr3_2:56119375-56119394 | Msa0412660:five_prime_UTR | 30.0% |
GGTAAGAAGAGGAATAGAAA+AGG | - | chr3_2:56116219-56116238 | Msa0412660:three_prime_UTR | 35.0% | |
GAATGAAAGATAGAGAGAGA+AGG | + | chr3_2:56116311-56116330 | None:intergenic | 35.0% | |
AAACTCAAACCTCACAATGT+TGG | - | chr3_2:56116392-56116411 | Msa0412660:three_prime_UTR | 35.0% | |
ACTGAAGATTCATGCTCTTA+CGG | - | chr3_2:56116516-56116535 | Msa0412660:three_prime_UTR | 35.0% | |
ATTTGGTTAGCATTTCGCAA+TGG | - | chr3_2:56116873-56116892 | Msa0412660:intron | 35.0% | |
ACAGAAAAACGAAAACAGAG+TGG | + | chr3_2:56116968-56116987 | None:intergenic | 35.0% | |
!! | CTCTGTTTTCGTTTTTCTGT+AGG | - | chr3_2:56116968-56116987 | Msa0412660:intron | 35.0% |
! | ATATTGGTCTGGGTTTATGT+AGG | - | chr3_2:56117804-56117823 | Msa0412660:CDS | 35.0% |
TGATTACAGAGCGTATGATA+AGG | - | chr3_2:56117997-56118016 | Msa0412660:CDS | 35.0% | |
AAGGCTGCTATAAAATGCAA+TGG | - | chr3_2:56118016-56118035 | Msa0412660:CDS | 35.0% | |
CTGCTATAAAATGCAATGGA+AGG | - | chr3_2:56118020-56118039 | Msa0412660:CDS | 35.0% | |
! | GGAAGCAGTTACAAATTTTG+AGG | - | chr3_2:56118042-56118061 | Msa0412660:CDS | 35.0% |
! | TTTGAGGCTAGTTCTTATGA+AGG | - | chr3_2:56118058-56118077 | Msa0412660:CDS | 35.0% |
GTACTACTTATTGACCATTG+AGG | - | chr3_2:56118110-56118129 | Msa0412660:intron | 35.0% | |
AAAAAAAAGGTGAGCCTCAA+TGG | + | chr3_2:56118127-56118146 | None:intergenic | 35.0% | |
!!! | ATTGAGGCTCACCTTTTTTT+TGG | - | chr3_2:56118126-56118145 | Msa0412660:intron | 35.0% |
CAGAATCTTGATCTGAACTT+GGG | - | chr3_2:56118318-56118337 | Msa0412660:CDS | 35.0% | |
ACCATTACACTCTTATCAAC+AGG | + | chr3_2:56118435-56118454 | None:intergenic | 35.0% | |
AATTCATGTGAAAGAGCAGA+GGG | + | chr3_2:56118507-56118526 | None:intergenic | 35.0% | |
!! | TAATCTGCGTTGATAGTTTG+AGG | - | chr3_2:56118562-56118581 | Msa0412660:intron | 35.0% |
CTCAATGTTCAGTCATCTTA+TGG | - | chr3_2:56118602-56118621 | Msa0412660:intron | 35.0% | |
TAATTAGTACCACTCCAGAT+TGG | + | chr3_2:56118656-56118675 | None:intergenic | 35.0% | |
TAATTACTTTCCCGTGTGTA+AGG | - | chr3_2:56118670-56118689 | Msa0412660:intron | 35.0% | |
TTAGTATTCACCTTACACAC+GGG | + | chr3_2:56118683-56118702 | None:intergenic | 35.0% | |
AGGAAAGAGCAATAGAGAAT+AGG | - | chr3_2:56118818-56118837 | Msa0412660:CDS | 35.0% | |
AAGAGCAATAGAGAATAGGA+TGG | - | chr3_2:56118822-56118841 | Msa0412660:CDS | 35.0% | |
AGTCTTTGTATCCAAGGTTT+AGG | - | chr3_2:56119121-56119140 | Msa0412660:CDS | 35.0% | |
AACTTGTAGGGTCTAAAAGT+AGG | - | chr3_2:56119157-56119176 | Msa0412660:CDS | 35.0% | |
GATTGAGATCCAACATTGTG+AGG | + | chr3_2:56116404-56116423 | None:intergenic | 40.0% | |
TGAATCTTCCATCTGAACGA+CGG | + | chr3_2:56116457-56116476 | None:intergenic | 40.0% | |
GTTCAGATGGAAGATTCATC+CGG | - | chr3_2:56116459-56116478 | Msa0412660:three_prime_UTR | 40.0% | |
AGAGCATGAATCTTCAGTGT+CGG | + | chr3_2:56116514-56116533 | None:intergenic | 40.0% | |
!! | GCTTTTTCCAGCAAACGAAT+CGG | - | chr3_2:56116656-56116675 | Msa0412660:CDS | 40.0% |
! | CTTTTTCCAGCAAACGAATC+GGG | - | chr3_2:56116657-56116676 | Msa0412660:CDS | 40.0% |
AATTTCTCGTCCGATCATCA+CGG | - | chr3_2:56116714-56116733 | Msa0412660:CDS | 40.0% | |
!! | ATCGTGGTGTTACTTTCTAC+CGG | - | chr3_2:56116826-56116845 | Msa0412660:CDS | 40.0% |
!! | TCGTTTTTCTGTAGGGATTG+TGG | - | chr3_2:56116976-56116995 | Msa0412660:CDS | 40.0% |
!! | ACAGAGTACTGGTTTCTCAA+GGG | - | chr3_2:56117583-56117602 | Msa0412660:CDS | 40.0% |
!! | AGGGGAAGTTCTAAATACAG+AGG | - | chr3_2:56117602-56117621 | Msa0412660:CDS | 40.0% |
GGAGTTACTCTGCATAAATG+TGG | - | chr3_2:56117623-56117642 | Msa0412660:CDS | 40.0% | |
TCTGCATAAATGTGGACGAT+GGG | - | chr3_2:56117631-56117650 | Msa0412660:CDS | 40.0% | |
GCAGAATCTTGATCTGAACT+TGG | - | chr3_2:56118317-56118336 | Msa0412660:CDS | 40.0% | |
TGAACATCAGAGTTAGAAGG+AGG | + | chr3_2:56118351-56118370 | None:intergenic | 40.0% | |
TTTGCAAGTTCAGCGTAACT+GGG | - | chr3_2:56118401-56118420 | Msa0412660:intron | 40.0% | |
! | GCCTGTTGATAAGAGTGTAA+TGG | - | chr3_2:56118431-56118450 | Msa0412660:intron | 40.0% |
ATTCATGTGAAAGAGCAGAG+GGG | + | chr3_2:56118506-56118525 | None:intergenic | 40.0% | |
GAATTCATGTGAAAGAGCAG+AGG | + | chr3_2:56118508-56118527 | None:intergenic | 40.0% | |
!! | GTTGATAGTTTGAGGACTCT+GGG | - | chr3_2:56118570-56118589 | Msa0412660:intron | 40.0% |
! | ACGTCTAGTCTTTGTATCCA+AGG | - | chr3_2:56119115-56119134 | Msa0412660:CDS | 40.0% |
!!! | CGGCAGGGATTTTTTTTACA+CGG | + | chr3_2:56119247-56119266 | None:intergenic | 40.0% |
TAAAAAAAATCCCTGCCGCA+AGG | - | chr3_2:56119249-56119268 | Msa0412660:exon | 40.0% | |
!! | GGAAGCGTTGTTGTTGAGTA+TGG | + | chr3_2:56116565-56116584 | None:intergenic | 45.0% |
! | ATCATTCCCGATTCGTTTGC+TGG | + | chr3_2:56116666-56116685 | None:intergenic | 45.0% |
ATCCATCCTCTACTCTCAGA+AGG | + | chr3_2:56116693-56116712 | None:intergenic | 45.0% | |
! | GTTACTTTCTACCGGAGAAC+TGG | - | chr3_2:56116834-56116853 | Msa0412660:intron | 45.0% |
GACGTTGGGAATCGCATATT+TGG | - | chr3_2:56116856-56116875 | Msa0412660:intron | 45.0% | |
ATTCTGCGTAGACAGAGTAC+TGG | - | chr3_2:56117572-56117591 | Msa0412660:CDS | 45.0% | |
!! | GACAGAGTACTGGTTTCTCA+AGG | - | chr3_2:56117582-56117601 | Msa0412660:CDS | 45.0% |
!! | CAGAGTACTGGTTTCTCAAG+GGG | - | chr3_2:56117584-56117603 | Msa0412660:CDS | 45.0% |
CTCTGCATAAATGTGGACGA+TGG | - | chr3_2:56117630-56117649 | Msa0412660:CDS | 45.0% | |
CTCGTATGGGACAGTTTCTT+GGG | - | chr3_2:56117657-56117676 | Msa0412660:intron | 45.0% | |
TGAAGGAGAGTTAACTTCCC+AGG | - | chr3_2:56118075-56118094 | Msa0412660:CDS | 45.0% | |
AGTACCATCGTTATCAGCCT+GGG | + | chr3_2:56118095-56118114 | None:intergenic | 45.0% | |
TAGTACCATCGTTATCAGCC+TGG | + | chr3_2:56118096-56118115 | None:intergenic | 45.0% | |
ATGATGAACATGCACCACAG+TGG | - | chr3_2:56118372-56118391 | Msa0412660:CDS | 45.0% | |
GTTTGCAAGTTCAGCGTAAC+TGG | - | chr3_2:56118400-56118419 | Msa0412660:intron | 45.0% | |
!! | CGTTGATAGTTTGAGGACTC+TGG | - | chr3_2:56118569-56118588 | Msa0412660:intron | 45.0% |
! | GGTTGATGCTCAGATGCTAT+GGG | + | chr3_2:56118632-56118651 | None:intergenic | 45.0% |
!! | AGGTTGATGCTCAGATGCTA+TGG | + | chr3_2:56118633-56118652 | None:intergenic | 45.0% |
TTAGTACCACTCCAGATTGG+AGG | + | chr3_2:56118653-56118672 | None:intergenic | 45.0% | |
AATCTGCTCCCGTTCCAAAT+TGG | - | chr3_2:56118845-56118864 | Msa0412660:CDS | 45.0% | |
ATCTGCTCCCGTTCCAAATT+GGG | - | chr3_2:56118846-56118865 | Msa0412660:CDS | 45.0% | |
GATGCTGCAGCAGAGAAATT+AGG | + | chr3_2:56118919-56118938 | None:intergenic | 45.0% | |
ATTCCCTTCAACAACAGCTG+CGG | - | chr3_2:56118945-56118964 | Msa0412660:CDS | 45.0% | |
TATCCGCAGCTGTTGTTGAA+GGG | + | chr3_2:56118951-56118970 | None:intergenic | 45.0% | |
! | GGGTGGAGGTATGTTATGTT+TGG | + | chr3_2:56118988-56119007 | None:intergenic | 45.0% |
TCGCTGGAGTAGGAAAATGA+GGG | + | chr3_2:56119008-56119027 | None:intergenic | 45.0% | |
! | TGCAGTAGAAAGAGGGTATG+GGG | + | chr3_2:56119041-56119060 | None:intergenic | 45.0% |
! | CTGCAGTAGAAAGAGGGTAT+GGG | + | chr3_2:56119042-56119061 | None:intergenic | 45.0% |
CTAGAGTTTACCATGCCTTG+CGG | + | chr3_2:56119267-56119286 | None:intergenic | 45.0% | |
ATCTTCCATCTGAACGACGG+AGG | + | chr3_2:56116454-56116473 | None:intergenic | 50.0% | |
GACGGAGGAATCAAAGCTAC+CGG | + | chr3_2:56116481-56116500 | None:intergenic | 50.0% | |
TGCTCTTACGGCGATGCATA+CGG | - | chr3_2:56116528-56116547 | Msa0412660:three_prime_UTR | 50.0% | |
AACAACGCTTCCGTCGACAA+CGG | - | chr3_2:56116573-56116592 | Msa0412660:three_prime_UTR | 50.0% | |
GGAGATAGTACCGTTGTCGA+CGG | + | chr3_2:56116586-56116605 | None:intergenic | 50.0% | |
GTCGACAACGGTACTATCTC+CGG | - | chr3_2:56116585-56116604 | Msa0412660:exon | 50.0% | |
! | ATCTCGCCTTCTGAGAGTAG+AGG | - | chr3_2:56116684-56116703 | Msa0412660:CDS | 50.0% |
GCAACAACAACAGTCTGCTC+CGG | + | chr3_2:56116747-56116766 | None:intergenic | 50.0% | |
ATTCCCAACGTCCAGTTCTC+CGG | + | chr3_2:56116848-56116867 | None:intergenic | 50.0% | |
ATTTGATACCGCGCATGCTG+CGG | - | chr3_2:56117134-56117153 | Msa0412660:intron | 50.0% | |
CGAGCTGCGATAAAGTTTCG+TGG | - | chr3_2:56117273-56117292 | Msa0412660:CDS | 50.0% | |
!! | AAAGTTTCGTGGCGTCGATG+CGG | - | chr3_2:56117284-56117303 | Msa0412660:CDS | 50.0% |
GCTCGTATGGGACAGTTTCT+TGG | - | chr3_2:56117656-56117675 | Msa0412660:intron | 50.0% | |
ATAGCGAGCTAGATGCTGCA+AGG | - | chr3_2:56117849-56117868 | Msa0412660:intron | 50.0% | |
! | ACTTCCCAGGCTGATAACGA+TGG | - | chr3_2:56118088-56118107 | Msa0412660:CDS | 50.0% |
AACATGCACCACAGTGGAAG+TGG | - | chr3_2:56118378-56118397 | Msa0412660:CDS | 50.0% | |
CTTGCAAACCACTTCCACTG+TGG | + | chr3_2:56118389-56118408 | None:intergenic | 50.0% | |
CTGAGCATCAACCTCCAATC+TGG | - | chr3_2:56118639-56118658 | Msa0412660:intron | 50.0% | |
CATCAACCTCCAATCTGGAG+TGG | - | chr3_2:56118644-56118663 | Msa0412660:intron | 50.0% | |
! | TGCCATGCCCAATTTGGAAC+GGG | + | chr3_2:56118856-56118875 | None:intergenic | 50.0% |
CTGCCATGCCCAATTTGGAA+CGG | + | chr3_2:56118857-56118876 | None:intergenic | 50.0% | |
GCTGCAGCAGAGAAATTAGG+TGG | + | chr3_2:56118916-56118935 | None:intergenic | 50.0% | |
TTCTCTGCTGCAGCATCATC+AGG | - | chr3_2:56118922-56118941 | Msa0412660:CDS | 50.0% | |
CTATCCGCAGCTGTTGTTGA+AGG | + | chr3_2:56118952-56118971 | None:intergenic | 50.0% | |
GAGTAGGAAAATGAGGGTGG+AGG | + | chr3_2:56119002-56119021 | None:intergenic | 50.0% | |
CTGGAGTAGGAAAATGAGGG+TGG | + | chr3_2:56119005-56119024 | None:intergenic | 50.0% | |
GTCGCTGGAGTAGGAAAATG+AGG | + | chr3_2:56119009-56119028 | None:intergenic | 50.0% | |
CCTGCAGTAGAAAGAGGGTA+TGG | + | chr3_2:56119043-56119062 | None:intergenic | 50.0% | |
CCATACCCTCTTTCTACTGC+AGG | - | chr3_2:56119040-56119059 | Msa0412660:CDS | 50.0% | |
CAGCTCCTGCAGTAGAAAGA+GGG | + | chr3_2:56119048-56119067 | None:intergenic | 50.0% | |
TCAGCTCCTGCAGTAGAAAG+AGG | + | chr3_2:56119049-56119068 | None:intergenic | 50.0% | |
ATCTGAACGACGGAGGAGAG+TGG | + | chr3_2:56116447-56116466 | None:intergenic | 55.0% | |
ACTCTCCTCCGTCGTTCAGA+TGG | - | chr3_2:56116446-56116465 | Msa0412660:three_prime_UTR | 55.0% | |
TCCGGTGAGCTTCAACACTC+CGG | - | chr3_2:56116603-56116622 | Msa0412660:CDS | 55.0% | |
TGTCCGTACAACAGCTTCGC+CGG | + | chr3_2:56116631-56116650 | None:intergenic | 55.0% | |
! | CGCCTTCTGAGAGTAGAGGA+TGG | - | chr3_2:56116688-56116707 | Msa0412660:CDS | 55.0% |
TTCTCGTCCGATCATCACGG+TGG | - | chr3_2:56116717-56116736 | Msa0412660:CDS | 55.0% | |
AGCCGGTGAAGAAGAGTCGT+CGG | - | chr3_2:56116778-56116797 | Msa0412660:CDS | 55.0% | |
TACTGCGAGCTTCGTGACCT+CGG | + | chr3_2:56116807-56116826 | None:intergenic | 55.0% | |
TCACGAAGCTCGCAGTATCG+TGG | - | chr3_2:56116810-56116829 | Msa0412660:CDS | 55.0% | |
TCTACCGGAGAACTGGACGT+TGG | - | chr3_2:56116841-56116860 | Msa0412660:intron | 55.0% | |
CTACCGGAGAACTGGACGTT+GGG | - | chr3_2:56116842-56116861 | Msa0412660:intron | 55.0% | |
TGGACGATGGGAAGCTCGTA+TGG | - | chr3_2:56117643-56117662 | Msa0412660:intron | 55.0% | |
GGACGATGGGAAGCTCGTAT+GGG | - | chr3_2:56117644-56117663 | Msa0412660:intron | 55.0% | |
! | TGAAAGAGCAGAGGGGCATG+AGG | + | chr3_2:56118499-56118518 | None:intergenic | 55.0% |
CTCCCGTTCCAAATTGGGCA+TGG | - | chr3_2:56118851-56118870 | Msa0412660:CDS | 55.0% | |
TGGAGCTGCCATGCCCAATT+TGG | + | chr3_2:56118862-56118881 | None:intergenic | 55.0% | |
CTGGAGTTAGTCGCTGGAGT+AGG | + | chr3_2:56119018-56119037 | None:intergenic | 55.0% | |
! | GTAGAAAGAGGGTATGGGGC+TGG | + | chr3_2:56119037-56119056 | None:intergenic | 55.0% |
AAAATCCCTGCCGCAAGGCA+TGG | - | chr3_2:56119254-56119273 | Msa0412660:exon | 55.0% | |
GTTTACCATGCCTTGCGGCA+GGG | + | chr3_2:56119262-56119281 | None:intergenic | 55.0% | |
AGTTTACCATGCCTTGCGGC+AGG | + | chr3_2:56119263-56119282 | None:intergenic | 55.0% | |
GACGGAGGAGAGTGGAAGAG+AGG | + | chr3_2:56116439-56116458 | None:intergenic | 60.0% | |
!! | AGTGTCGGCAGCGTTGACGA+CGG | + | chr3_2:56116499-56116518 | None:intergenic | 60.0% |
!! | GCCGGAGTGTTGAAGCTCAC+CGG | + | chr3_2:56116607-56116626 | None:intergenic | 60.0% |
CGGTACGCCACCGTGATGAT+CGG | + | chr3_2:56116727-56116746 | None:intergenic | 60.0% | |
CGATCATCACGGTGGCGTAC+CGG | - | chr3_2:56116725-56116744 | Msa0412660:CDS | 60.0% | |
TGTTGCTCCACGACCTCAGC+CGG | - | chr3_2:56116761-56116780 | Msa0412660:CDS | 60.0% | |
! | TTCTTCACCGGCTGAGGTCG+TGG | + | chr3_2:56116771-56116790 | None:intergenic | 60.0% |
! | CGACTCTTCTTCACCGGCTG+AGG | + | chr3_2:56116777-56116796 | None:intergenic | 60.0% |
GCCGGTGAAGAAGAGTCGTC+GGG | - | chr3_2:56116779-56116798 | Msa0412660:CDS | 60.0% | |
CCCCGACGACTCTTCTTCAC+CGG | + | chr3_2:56116783-56116802 | None:intergenic | 60.0% | |
CCGGTGAAGAAGAGTCGTCG+GGG | - | chr3_2:56116780-56116799 | Msa0412660:CDS | 60.0% | |
TTACCTTGCCGCAGCATGCG+CGG | + | chr3_2:56117145-56117164 | None:intergenic | 60.0% | |
ATGGGGCTGGAGTTAGTCGC+TGG | + | chr3_2:56119024-56119043 | None:intergenic | 60.0% | |
GAGCTTCAACACTCCGGCGC+CGG | - | chr3_2:56116609-56116628 | Msa0412660:CDS | 65.0% | |
TACAACAGCTTCGCCGGCGC+CGG | + | chr3_2:56116625-56116644 | None:intergenic | 65.0% | |
! | GCGCCGGCGAAGCTGTTGTA+CGG | - | chr3_2:56116625-56116644 | Msa0412660:CDS | 65.0% |
AGAAGAGTCGTCGGGGACCG+AGG | - | chr3_2:56116787-56116806 | Msa0412660:CDS | 65.0% | |
ATACCGCGCATGCTGCGGCA+AGG | - | chr3_2:56117139-56117158 | Msa0412660:intron | 65.0% | |
!! | GTCGGCAGCGTTGACGACGG+AGG | + | chr3_2:56116496-56116515 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 56116194 | 56119471 | 56116194 | ID=Msa0412660;Name=Msa0412660 |
chr3_2 | mRNA | 56116194 | 56119471 | 56116194 | ID=Msa0412660-mRNA-1;Parent=Msa0412660;Name=Msa0412660-mRNA-1;_AED=0.14;_eAED=0.14;_QI=214|1|1|1|1|1|10|403|471 |
chr3_2 | exon | 56116194 | 56116845 | 56116194 | ID=Msa0412660-mRNA-1:exon:11472;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56116974 | 56117087 | 56116974 | ID=Msa0412660-mRNA-1:exon:11471;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56117213 | 56117355 | 56117213 | ID=Msa0412660-mRNA-1:exon:11470;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56117556 | 56117659 | 56117556 | ID=Msa0412660-mRNA-1:exon:11469;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56117795 | 56117839 | 56117795 | ID=Msa0412660-mRNA-1:exon:11468;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56117981 | 56118126 | 56117981 | ID=Msa0412660-mRNA-1:exon:11467;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56118315 | 56118402 | 56118315 | ID=Msa0412660-mRNA-1:exon:11466;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56118505 | 56118535 | 56118505 | ID=Msa0412660-mRNA-1:exon:11465;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56118650 | 56118675 | 56118650 | ID=Msa0412660-mRNA-1:exon:11464;Parent=Msa0412660-mRNA-1 |
chr3_2 | exon | 56118788 | 56119471 | 56118788 | ID=Msa0412660-mRNA-1:exon:11463;Parent=Msa0412660-mRNA-1 |
chr3_2 | five_prime_UTR | 56119258 | 56119471 | 56119258 | ID=Msa0412660-mRNA-1:five_prime_utr;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56118788 | 56119257 | 56118788 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56118650 | 56118675 | 56118650 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56118505 | 56118535 | 56118505 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56118315 | 56118402 | 56118315 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56117981 | 56118126 | 56117981 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56117795 | 56117839 | 56117795 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56117556 | 56117659 | 56117556 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56117213 | 56117355 | 56117213 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56116974 | 56117087 | 56116974 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | CDS | 56116597 | 56116845 | 56116597 | ID=Msa0412660-mRNA-1:cds;Parent=Msa0412660-mRNA-1 |
chr3_2 | three_prime_UTR | 56116194 | 56116596 | 56116194 | ID=Msa0412660-mRNA-1:three_prime_utr;Parent=Msa0412660-mRNA-1 |
Gene Sequence |
Protein sequence |