AlfalfaGEDB | Msa0836510

M. sativa cultivar zhongmu-4 / Msa0836510

KEGG: -
GO: -
PFAM: PF03763.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836510	XP_003611736.1	96.314	407	9	3	1	404	1	404	0.0	769

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836510	G7K6N7	96.314	407	9	3	1	404	1	404	0.0	769

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0836510	0.804756	1.853941e-49	-8.615850e-47
Msa0005690	Msa0836510	0.800724	1.260314e-48	-8.615850e-47
Msa0008330	Msa0836510	0.825646	4.183838e-54	-8.615850e-47
Msa0014790	Msa0836510	0.801378	9.263044e-49	-8.615850e-47
Msa0014970	Msa0836510	0.802113	6.545201e-49	-8.615850e-47
Msa0017420	Msa0836510	0.801526	8.639433e-49	-8.615850e-47
Msa0021980	Msa0836510	0.891567	3.529311e-74	-8.615850e-47
Msa0026120	Msa0836510	0.809181	2.148264e-50	-8.615850e-47
Msa0026670	Msa0836510	0.809222	2.105478e-50	-8.615850e-47
Msa0029020	Msa0836510	-0.801479	8.832044e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836510	MtrunA17_Chr5g0402201	96.314	407	9	3	1	404	1	404	0.0	769
Msa0836510	MtrunA17_Chr8g0375091	54.028	422	154	14	9	402	27	436	7.25e-136	395
Msa0836510	MtrunA17_Chr1g0153281	40.194	413	199	15	14	403	232	619	1.36e-61	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0836510	AT1G45207.3	37.799	418	206	13	1	403	170	548	1.00e-61	208
Msa0836510	AT1G45207.2	37.352	423	206	14	1	403	171	554	2.05e-59	202
Msa0836510	AT4G36970.1	39.163	406	174	20	1	366	1	373	2.86e-44	159
Msa0836510	AT1G30320.1	25.926	351	221	12	64	399	175	501	2.07e-11	65.9

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Find 102 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGAAAACCAAAAG+GGG	0.619520	5_4:-9993795	Msa0836510:CDS
AAAAGAACAAAAGTTATGTG+TGG	0.617990	5_4:+9994066	None:intergenic
AAAGAAGAAATCGTCATCAA+TGG	0.476995	5_4:-9992319	Msa0836510:CDS
AAATGCAATGTTCACTATCT+AGG	0.385709	5_4:+9991998	None:intergenic
AACAATGAGCGCGGTGAATG+TGG	0.592370	5_4:+9994184	None:intergenic
AACCTTAACACCAGTTCAAC+AGG	0.395348	5_4:-9992244	Msa0836510:CDS
AACTTCATACCATGGGAATT+AGG	0.371290	5_4:+9993292	None:intergenic
AAGAACAATTTGCATTGAGG+TGG	0.556675	5_4:+9994161	None:intergenic
AAGGACAATACCTTCTAAAT+GGG	0.483996	5_4:-9993680	Msa0836510:CDS
AAGTGTTTGACAGATGAAAT+TGG	0.415236	5_4:-9992343	Msa0836510:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGGAAAATACAAGTAGAAT+AGG	+	chr5_4:9991918-9991937	None:intergenic	30.0%
GATAAGAACAATTTGCATTG+AGG	+	chr5_4:9991963-9991982	None:intergenic	30.0%
TTCACTCATTGCTATACTAT+TGG	-	chr5_4:9991998-9992017	Msa0836510:three_prime_UTR	30.0%
CCTTAAACATGTGTGATATA+TGG	+	chr5_4:9992125-9992144	None:intergenic	30.0%
CCATATATCACACATGTTTA+AGG	-	chr5_4:9992122-9992141	Msa0836510:three_prime_UTR	30.0%
AAGGACAATACCTTCTAAAT+GGG	-	chr5_4:9992438-9992457	Msa0836510:intron	30.0%
AGAAATCCCAAATCAAAAAG+TGG	-	chr5_4:9992520-9992539	Msa0836510:intron	30.0%
TGTTGAAGAGAAACAATATC+TGG	+	chr5_4:9992667-9992686	None:intergenic	30.0%
TATCCACATGACAATTTGTA+TGG	-	chr5_4:9992691-9992710	Msa0836510:intron	30.0%
TTATCATCAATGTCATAACG+TGG	+	chr5_4:9992718-9992737	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	9991887	9994253	9991887	ID=Msa0836510;Name=Msa0836510
chr5_4	mRNA	9991887	9994253	9991887	ID=Msa0836510-mRNA-1;Parent=Msa0836510;Name=Msa0836510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=363\|1\|1\|1\|1\|1\|4\|262\|404
chr5_4	exon	9991887	9992352	9991887	ID=Msa0836510-mRNA-1:exon:4456;Parent=Msa0836510-mRNA-1
chr5_4	exon	9992535	9992619	9992535	ID=Msa0836510-mRNA-1:exon:4455;Parent=Msa0836510-mRNA-1
chr5_4	exon	9992725	9993061	9992725	ID=Msa0836510-mRNA-1:exon:4454;Parent=Msa0836510-mRNA-1
chr5_4	exon	9993302	9994253	9993302	ID=Msa0836510-mRNA-1:exon:4453;Parent=Msa0836510-mRNA-1
chr5_4	five_prime_UTR	9993891	9994253	9993891	ID=Msa0836510-mRNA-1:five_prime_utr;Parent=Msa0836510-mRNA-1
chr5_4	CDS	9993302	9993890	9993302	ID=Msa0836510-mRNA-1:cds;Parent=Msa0836510-mRNA-1
chr5_4	CDS	9992725	9993061	9992725	ID=Msa0836510-mRNA-1:cds;Parent=Msa0836510-mRNA-1
chr5_4	CDS	9992535	9992619	9992535	ID=Msa0836510-mRNA-1:cds;Parent=Msa0836510-mRNA-1
chr5_4	CDS	9992149	9992352	9992149	ID=Msa0836510-mRNA-1:cds;Parent=Msa0836510-mRNA-1
chr5_4	three_prime_UTR	9991887	9992148	9991887	ID=Msa0836510-mRNA-1:three_prime_utr;Parent=Msa0836510-mRNA-1

Gene Sequence

>Msa0836510

ATGAAAAAGAATTCTGGTACCTCTCAGAAACTAGGTTCATTCCTAAGTCCAAAGGAACCAAACTACAGAGAAAAAAACATTGAAAACCAAAAGGGGTGGAACTCAGAGAGAGTATTGTTGCATCCAACAACAAGCAGCAATATCAGAAGACAAGCCTATGTAGCTGGCGTTTCACCCTTCAACAGTGGAAGGACAATACCTTCTAAATGGGATGATGCAGAGAGATGGATTTGTAGTCCAGTTTCTTCTTCAGGCTATGTTCAACATCAGAGAAATCCCAAATCAAAAAGTGGTCCAATTGTGCCACAAGGAACAACTTACTACTCCAATTTTTCACCTACGATTCCACTGCGAAATGGTCTGGTGGTGAAAAACTTAATGATGAGTTCTCCTTTTACAACTGGTGTGTTGGCACCAGATATTGTTTCTCTTCAACATTATTATCCACATGACAATTTGTATGGTCCACGTTATGACATTGATGATAATAGTTCAGTGGTTAATGAGAATGGTGTTGCTCGTACATCTGTGTCGAACGCGCCTTCGTGGTCAGAACTTCTCTCTGATCCGTCTTCGCCTAATTCCCATGATGAGAAATGTGATGGGACTACGACTGTGATGTCTCCTATGTCAAAAATTGATAAAGGTACCCAAATGAGCTCTCCAGAGACTGAAAATGAGGACCATTCATCTCCAAAATCTTCTTCATCCCCAATTTTGGCCATGAATCCAAAAAGTTGCCATTCAGAAAAGTTAGAGATCAAAGATGTGCAGGTAGACTGTCAAGCTAATGTTATTAAGTGGTCCAAGAGTTATGCATCCAAGCTAAGCTCTTTCAATGGTAAAGAGTTGAAGAAAAGTGGTACAGAAGCCCAAGCTTCAGGTTTGGATATTGCAGAGACAACATCAGACACTTCCAGTTCCAAGTTTGAGAGAGATGATGAAGCTAAAATCATTGCATGGGAGAGTTTGCAAAAAGCAAAGGCTGAAGCTGCAATTAGAAAACTTGAGATGAAATTGGAAAAGAAGAAATCGTCATCAATGGATAAGATTCTAAACAAACTGAGAAGAGCACAGATGAAAGCTGAAAAGATGAGAACCTTAACACCAGTTCAACAGGAGCAGCATGTTTCCAAGACTTGGAAAGTATTTTCATTCACCAAATATGGCAAAATATGGTCTCCAAGCAGCTGCTTTGCAAGCCATGTTCCGTGA

Protein sequence

>Msa0836510

MKKNSGTSQKLGSFLSPKEPNYREKNIENQKGWNSERVLLHPTTSSNIRRQAYVAGVSPFNSGRTIPSKWDDAERWICSPVSSSGYVQHQRNPKSKSGPIVPQGTTYYSNFSPTIPLRNGLVVKNLMMSSPFTTGVLAPDIVSLQHYYPHDNLYGPRYDIDDNSSVVNENGVARTSVSNAPSWSELLSDPSSPNSHDEKCDGTTTVMSPMSKIDKGTQMSSPETENEDHSSPKSSSSPILAMNPKSCHSEKLEIKDVQVDCQANVIKWSKSYASKLSSFNGKELKKSGTEAQASGLDIAETTSDTSSSKFERDDEAKIIAWESLQKAKAEAAIRKLEMKLEKKKSSSMDKILNKLRRAQMKAEKMRTLTPVQQEQHVSKTWKVFSFTKYGKIWSPSSCFASHVP*