AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1082180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082180 MtrunA17_Chr7g0269631 94.768 669 1 1 1 669 1 635 0.0 1291
Msa1082180 MtrunA17_Chr4g0013831 69.406 657 167 1 1 657 1 623 0.0 924
Msa1082180 MtrunA17_Chr1g0186431 39.711 622 325 10 5 620 29 606 3.54e-133 409
Msa1082180 MtrunA17_Chr1g0168161 37.954 606 323 12 5 601 28 589 2.22e-120 376
Msa1082180 MtrunA17_Chr7g0274831 36.090 665 325 16 5 632 34 635 9.28e-115 362
Msa1082180 MtrunA17_Chr1g0190021 36.161 672 358 16 3 657 26 643 7.92e-113 357
Msa1082180 MtrunA17_Chr5g0405701 32.872 289 163 7 337 601 473 754 6.69e-36 145
Msa1082180 MtrunA17_Chr8g0377481 29.261 352 201 10 301 616 322 661 2.99e-33 137
Msa1082180 MtrunA17_Chr3g0136601 33.562 292 147 9 383 630 375 663 6.62e-33 135
Msa1082180 MtrunA17_Chr8g0371601 32.031 256 152 3 368 601 461 716 8.92e-33 135
Msa1082180 MtrunA17_Chr3g0122391 27.128 376 219 10 301 636 370 730 1.68e-32 134
Msa1082180 MtrunA17_Chr5g0447641 28.852 357 202 9 301 616 547 892 4.32e-29 124
Msa1082180 MtrunA17_Chr8g0392301 30.820 305 156 6 372 622 377 680 1.45e-28 122
Msa1082180 MtrunA17_Chr1g0150511 37.226 137 83 2 382 517 380 514 3.39e-20 95.9
Msa1082180 MtrunA17_Chr1g0150511 38.393 112 64 3 518 626 585 694 1.12e-11 68.6
Msa1082180 MtrunA17_Chr1g0194741 27.719 285 148 11 358 596 379 651 2.12e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082180 AT2G40940.1 72.828 633 138 1 2 634 1 599 0.0 916
Msa1082180 AT1G66340.1 67.683 656 174 2 2 657 1 618 0.0 883
Msa1082180 AT3G23150.2 38.134 611 307 15 5 596 32 590 2.09e-113 353
Msa1082180 AT3G23150.1 38.312 616 309 15 5 601 32 595 1.13e-112 357
Msa1082180 AT3G04580.2 34.627 670 377 14 4 657 26 650 1.08e-106 341
Msa1082180 AT3G04580.1 34.627 670 377 14 4 657 26 650 1.08e-106 341
Msa1082180 AT1G04310.1 34.672 548 299 11 5 531 34 543 3.75e-85 281
Msa1082180 AT1G04310.2 34.672 548 299 11 5 531 34 543 3.75e-85 281
Msa1082180 AT5G10720.1 30.966 352 210 9 325 653 310 651 5.66e-38 152
Msa1082180 AT1G27320.1 29.714 350 204 7 299 616 378 717 9.08e-37 148
Msa1082180 AT2G17820.1 32.056 287 168 6 337 601 462 743 1.61e-35 144
Msa1082180 AT5G35750.1 30.405 296 165 7 369 627 578 869 5.81e-31 130
Msa1082180 AT2G01830.2 29.545 308 165 5 372 631 466 769 3.39e-30 127
Msa1082180 AT2G01830.5 29.545 308 165 5 372 631 455 758 3.87e-30 127
Msa1082180 AT2G01830.1 29.545 308 165 5 372 631 443 746 4.15e-30 127
Msa1082180 AT2G01830.4 29.545 308 165 5 372 631 443 746 4.15e-30 127
Msa1082180 AT2G01830.6 29.545 308 165 5 372 631 443 746 4.15e-30 127
Msa1082180 AT2G01830.3 29.545 308 165 5 372 631 443 746 4.15e-30 127
Msa1082180 AT2G47430.1 27.491 291 167 10 368 620 385 669 1.66e-16 84.3
Msa1082180 AT4G16250.1 23.577 246 161 8 360 601 914 1136 5.72e-11 66.6

Find 181 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCACATGCTGCTATTT+TGG 0.127774 7_2:-82159145 Msa1082180:CDS
GATATAAAGATATGCAATTT+TGG 0.178667 7_2:+82157679 None:intergenic
GCTCAGGCCAATCATTAATT+TGG 0.179813 7_2:+82160350 None:intergenic
TTTGAGCAGGTTAAGGATTC+TGG 0.193430 7_2:-82158196 Msa1082180:intron
AATCAACCTTCATGGTGTTT+TGG 0.215357 7_2:-82158815 Msa1082180:CDS
CTGCTTTCTTTCCATATAGA+TGG 0.235675 7_2:-82160993 Msa1082180:CDS
GTGGAGTTGGGTAGGACTTT+AGG 0.238818 7_2:-82160628 Msa1082180:CDS
GATGGGTTCTTATGCAGTTT+GGG 0.252158 7_2:-82160975 Msa1082180:CDS
AGCATTGTCATCACTTCTTT+TGG 0.253771 7_2:-82158974 Msa1082180:CDS
CGCCAATCCTGTAAGGATTC+TGG 0.273695 7_2:+82158506 None:intergenic
TTGGACTAGCTATTTGTAAA+AGG 0.274567 7_2:-82158081 Msa1082180:intron
CGTTAGTTCAACCATTGATT+TGG 0.279070 7_2:-82157423 Msa1082180:three_prime_UTR
GTGGATTGGATACCGGAAAA+AGG 0.285030 7_2:+82161773 None:intergenic
GCTCTTCCGCCTTGTTCTTA+AGG 0.299367 7_2:+82160767 None:intergenic
AGATGGGTTCTTATGCAGTT+TGG 0.302430 7_2:-82160976 Msa1082180:CDS
ACAAGGCGGAAGAGCTTGAT+AGG 0.308682 7_2:-82160759 Msa1082180:CDS
TGCAAAACCAGAATCCTTAC+AGG 0.315260 7_2:-82158513 Msa1082180:CDS
CAATGAAACTACAATATAAT+CGG 0.315913 7_2:+82157370 None:intergenic
TGCATAAGAACCCATCTATA+TGG 0.316824 7_2:+82160982 None:intergenic
AAGTCTCCGCCTAATCTATT+TGG 0.318508 7_2:-82161821 Msa1082180:five_prime_UTR
CAACATTCTCACATGTCTTC+CGG 0.319637 7_2:+82160705 None:intergenic
ATCTCATGGGTGGGCACATA+TGG 0.329280 7_2:-82157916 Msa1082180:CDS
TAATGATTGGCCTGAGCTTT+CGG 0.339005 7_2:-82160344 Msa1082180:CDS
CACCTGAAGTTGTTGCGGTT+CGG 0.344532 7_2:-82160399 Msa1082180:CDS
CAAATTTCCAAATTAATGAT+TGG 0.349017 7_2:-82160357 Msa1082180:CDS
TCTAGCAGTGGTTCAGGTCT+TGG 0.350863 7_2:-82158100 Msa1082180:CDS
TTCATTGAACCGAGTTAAAC+TGG 0.353085 7_2:-82157354 Msa1082180:three_prime_UTR
ATTGAAGAGTAGTAATGTTT+TGG 0.359573 7_2:-82158908 Msa1082180:CDS
CTGAAGACTTCATTGACAAT+AGG 0.366052 7_2:+82160496 None:intergenic
TGAACCACAATTGGTTCAAC+TGG 0.370506 7_2:-82157330 Msa1082180:three_prime_UTR
ATAGAAGACTTCAAGTATAA+AGG 0.374332 7_2:+82161949 None:intergenic
GAATGTTGACTCATGAAATT+AGG 0.375510 7_2:-82160690 Msa1082180:CDS
GAGAGCGAGGGTCACGATAA+AGG 0.377013 7_2:-82157890 Msa1082180:CDS
GCTGTTTGCAGCTATAGATT+AGG 0.378023 7_2:-82157600 Msa1082180:three_prime_UTR
ACCTGAAGTTGTTGCGGTTC+GGG 0.378789 7_2:-82160398 Msa1082180:CDS
TGTCGATGTTGTTGCAGATC+AGG 0.380378 7_2:-82160245 Msa1082180:intron
GTTAGTTCAACCATTGATTT+GGG 0.382348 7_2:-82157422 Msa1082180:three_prime_UTR
CTCTCGCCGAGCTAAATCTA+AGG 0.393829 7_2:+82159077 None:intergenic
TAAACTGGTTGAACCACAAT+TGG 0.408863 7_2:-82157339 Msa1082180:three_prime_UTR
ATGGCATGAGTAGGTAGATC+AGG 0.413426 7_2:+82158632 None:intergenic
AGATTCAAACCACTTCTTGA+TGG 0.415200 7_2:+82160580 None:intergenic
GTTCGATCTAGCAGTGGTTC+AGG 0.425531 7_2:-82158106 Msa1082180:CDS
CTCCACTTCCACTATATGCT+TGG 0.434484 7_2:+82157789 None:intergenic
AAATTAGGAGCACTCTTGAT+AGG 0.435699 7_2:-82160675 Msa1082180:CDS
TGCTTTCTTTCCATATAGAT+GGG 0.436307 7_2:-82160992 Msa1082180:CDS
GGGGCAAGAATTAAAGTAAT+GGG 0.436802 7_2:+82158653 None:intergenic
GAGTTGATCCCGGGCTCGCA+TGG 0.439303 7_2:+82159116 None:intergenic
TACTTGACAAGAAGTTCATC+TGG 0.439756 7_2:+82161093 None:intergenic
AGCTCGGCGAGAGGCTGAAA+TGG 0.447274 7_2:-82159067 Msa1082180:CDS
AATGAAACTACAATATAATC+GGG 0.448185 7_2:+82157371 None:intergenic
ATTGATTGATATTCATATGA+AGG 0.448953 7_2:+82161851 None:intergenic
GCTACATTTGTAGTCAAACT+TGG 0.452125 7_2:-82157860 Msa1082180:CDS
GGGTAGGACTTTAGGATTGG+AGG 0.452722 7_2:-82160620 Msa1082180:CDS
ACCCGAACCGCAACAACTTC+AGG 0.453206 7_2:+82160397 None:intergenic
GGCCAAGCATATAGTGGAAG+TGG 0.455936 7_2:-82157791 Msa1082180:CDS
ATTCAGATTTGTAAATCTCA+TGG 0.457675 7_2:-82157930 Msa1082180:intron
ATTCTTACTCAGGAAGAAAC+CGG 0.461381 7_2:-82160724 Msa1082180:CDS
CCAAAATAGCAGCATGTGAA+AGG 0.461533 7_2:+82159145 None:intergenic
TTGTTCCATGAGTTGATCCC+GGG 0.464658 7_2:+82159107 None:intergenic
TTCATTGCATAATATAAACT+TGG 0.467232 7_2:-82157486 Msa1082180:three_prime_UTR
AGCAGAGGCCAAGCATATAG+TGG 0.467264 7_2:-82157797 Msa1082180:CDS
AGAAGTTCATCTGGAGGATA+AGG 0.468819 7_2:+82161102 None:intergenic
AAACCAACTGATGAACTAAC+CGG 0.469233 7_2:+82157397 None:intergenic
TTGACAATAGGAAGGTTTGT+TGG 0.470136 7_2:+82160508 None:intergenic
AAAGACCACTCTTGTGGAGT+TGG 0.471472 7_2:-82160641 Msa1082180:CDS
AAATCAATGGTTGAACTAAC+GGG 0.472002 7_2:+82157425 None:intergenic
TGGTAGCCTTGAATTAGAAA+TGG 0.472836 7_2:-82158842 Msa1082180:CDS
GTAGTCAAACTTGGGATTTG+TGG 0.473180 7_2:-82157851 Msa1082180:CDS
TTTGTTCCATGAGTTGATCC+CGG 0.480126 7_2:+82159106 None:intergenic
AAGACCACTCTTGTGGAGTT+GGG 0.480183 7_2:-82160640 Msa1082180:CDS
CAAATCAATGGTTGAACTAA+CGG 0.485230 7_2:+82157424 None:intergenic
ACAAAATAAATGAGTTCGAC+AGG 0.487975 7_2:+82161024 None:intergenic
GTTGGGTAGGACTTTAGGAT+TGG 0.493614 7_2:-82160623 Msa1082180:CDS
TGGAGGAGTCCATGCGAGCC+CGG 0.494071 7_2:-82159125 Msa1082180:CDS
TCAACCATTGATTTGGGAGC+CGG 0.497857 7_2:-82157416 Msa1082180:three_prime_UTR
TGTGGTATACGCATAGCTCT+CGG 0.503245 7_2:+82160469 None:intergenic
TCTATCATAACCCTCTGCTC+TGG 0.509698 7_2:+82158937 None:intergenic
GAACCACTGCTAGATCGAAC+AGG 0.510532 7_2:+82158109 None:intergenic
GGAGGAGTCCATGCGAGCCC+GGG 0.516805 7_2:-82159124 Msa1082180:CDS
GTTCTTAAGGAACAACTCAC+GGG 0.520997 7_2:+82160780 None:intergenic
AACCAGAATCCTTACAGGAT+TGG 0.521860 7_2:-82158508 Msa1082180:CDS
CAGGTTAAGGATTCTGGATG+TGG 0.523361 7_2:-82158190 Msa1082180:CDS
CGGAGTGCGCCAAATAGATT+AGG 0.523903 7_2:+82161812 None:intergenic
TTCAGATTTGTAAATCTCAT+GGG 0.524035 7_2:-82157929 Msa1082180:intron
TCTGCTTGCAGCTTGATGAT+CGG 0.525516 7_2:+82157814 None:intergenic
AGGAGGTCGCCAATCCTGTA+AGG 0.525729 7_2:+82158499 None:intergenic
TATAACTAGTTGATACGATA+GGG 0.528891 7_2:+82157532 None:intergenic
AAATGACCATCACTTGATGC+TGG 0.529879 7_2:+82158467 None:intergenic
GGAAGAGCTTGATAGGGAGA+TGG 0.530026 7_2:-82160752 Msa1082180:CDS
CTACATTTGTAGTCAAACTT+GGG 0.530312 7_2:-82157859 Msa1082180:CDS
GTGGTATACGCATAGCTCTC+GGG 0.531017 7_2:+82160470 None:intergenic
TGTTCTTAAGGAACAACTCA+CGG 0.533686 7_2:+82160779 None:intergenic
CTGAACTGACTCCAGAGCAG+AGG 0.535510 7_2:-82158948 Msa1082180:CDS
AAAACCAGTTGAACCAATTG+TGG 0.536954 7_2:+82157326 None:intergenic
GATGGGACTTATTCTTACTC+AGG 0.538781 7_2:-82160734 Msa1082180:CDS
CATGTGGGTGTGTTAGATGA+TGG 0.539856 7_2:-82161148 Msa1082180:exon
ATGGGTTCTTATGCAGTTTG+GGG 0.539955 7_2:-82160974 Msa1082180:CDS
TTAACTTATCATGTACAAGT+TGG 0.540061 7_2:-82160541 Msa1082180:CDS
ATCTTTATATCAATGTCGAC+TGG 0.540215 7_2:-82157667 Msa1082180:three_prime_UTR
TTACTCAATGATGACGACAT+AGG 0.543430 7_2:-82157746 Msa1082180:CDS
AGGGGCAAGAATTAAAGTAA+TGG 0.544261 7_2:+82158652 None:intergenic
ACTCTGAGACTGAGTAAACT+TGG 0.544636 7_2:+82158135 None:intergenic
CCTCACATGCACCTCAGATG+TGG 0.544703 7_2:-82159265 Msa1082180:CDS
TCATTTCTATATACGAGTCC+AGG 0.548157 7_2:-82158450 Msa1082180:intron
GAAGAGCTTGATAGGGAGAT+GGG 0.548570 7_2:-82160751 Msa1082180:CDS
CTCACATGCACCTCAGATGT+GGG 0.548695 7_2:-82159264 Msa1082180:CDS
CAATGCTGTCAAATATACTA+AGG 0.548729 7_2:-82158564 Msa1082180:CDS
GATCTGTCCCGACTGGAAGA+TGG 0.548912 7_2:-82158862 Msa1082180:CDS
CATGGGTGGGCACATATGGA+TGG 0.549664 7_2:-82157912 Msa1082180:CDS
GCGAGCCCGGGATCAACTCA+TGG 0.550447 7_2:-82159112 Msa1082180:CDS
GTATAACTAGTTGATACGAT+AGG 0.554353 7_2:+82157531 None:intergenic
AAGGCTACCATCTTCCAGTC+GGG 0.554665 7_2:+82158855 None:intergenic
GAGCCGGTTAGTTCATCAGT+TGG 0.555076 7_2:-82157400 Msa1082180:three_prime_UTR
CAAAATAGCAGCATGTGAAA+GGG 0.558668 7_2:+82159146 None:intergenic
CACTTTCTAGCACTATCAGT+AGG 0.560837 7_2:+82160289 None:intergenic
CTTGATGCTGGATAAAACTC+AGG 0.561674 7_2:+82158479 None:intergenic
CTAACCGGCTCCCAAATCAA+TGG 0.561924 7_2:+82157412 None:intergenic
CTTGCAGCTTGATGATCGGA+TGG 0.567335 7_2:+82157818 None:intergenic
TGTTCTCGATCTGTCCCGAC+TGG 0.567941 7_2:-82158869 Msa1082180:CDS
CAAGGCGGAAGAGCTTGATA+GGG 0.569408 7_2:-82160758 Msa1082180:CDS
GATATGTTTGTGTTGTGAGT+GGG 0.570820 7_2:+82161922 None:intergenic
CATCGACAAGCTCCAACTCA+TGG 0.570916 7_2:+82160260 None:intergenic
ATCTAACACACCCACATGAA+AGG 0.572240 7_2:+82161153 None:intergenic
TGGCATGAGTAGGTAGATCA+GGG 0.573826 7_2:+82158633 None:intergenic
AGATTTGTAAATCTCATGGG+TGG 0.574861 7_2:-82157926 Msa1082180:CDS
ACGTTGCCTTAGATTTAGCT+CGG 0.574999 7_2:-82159083 Msa1082180:CDS
TGCTGTCAAATATACTAAGG+AGG 0.577420 7_2:-82158561 Msa1082180:CDS
GCTGTCAAATATACTAAGGA+GGG 0.577474 7_2:-82158560 Msa1082180:CDS
TATTCTAAAGACCACTCTTG+TGG 0.580698 7_2:-82160647 Msa1082180:CDS
GTAAACTTGGTAAAGAGATG+TGG 0.583173 7_2:+82158148 None:intergenic
CTACTGATAGTGCTAGAAAG+TGG 0.585604 7_2:-82160288 Msa1082180:CDS
GCTAGGATAAGACCTCTTGT+CGG 0.586111 7_2:-82160433 Msa1082180:CDS
CACACACTTGTCCACTTGCT+AGG 0.588144 7_2:-82160450 Msa1082180:CDS
TTTCATGATTCATGACTGCA+AGG 0.589191 7_2:+82159022 None:intergenic
CCACTCTTGTGGAGTTGGGT+AGG 0.594476 7_2:-82160636 Msa1082180:CDS
GATTTGTAAATCTCATGGGT+GGG 0.596709 7_2:-82157925 Msa1082180:CDS
ACTTTCTAGCACTATCAGTA+GGG 0.597780 7_2:+82160290 None:intergenic
AGACTTCATTGACAATAGGA+AGG 0.597850 7_2:+82160500 None:intergenic
CCACATCTGAGGTGCATGTG+AGG 0.598355 7_2:+82159265 None:intergenic
GTAAGTGCTTAAATCTAGCA+AGG 0.598885 7_2:+82157765 None:intergenic
CAAGGCTACCATCTTCCAGT+CGG 0.599285 7_2:+82158854 None:intergenic
TGATATGTTTGTGTTGTGAG+TGG 0.600731 7_2:+82161921 None:intergenic
TGAACTGACTCCAGAGCAGA+GGG 0.605152 7_2:-82158947 Msa1082180:CDS
TGAGTTGTTCCTTAAGAACA+AGG 0.610418 7_2:-82160776 Msa1082180:CDS
GCACATATGGATGGAGAGCG+AGG 0.610844 7_2:-82157903 Msa1082180:CDS
GGCACATATCTTCCGACAAG+AGG 0.613814 7_2:+82160421 None:intergenic
AAGAGATGTGGAATATCTTG+TGG 0.615014 7_2:+82158160 None:intergenic
GTGGTTCAACCAGTTTAACT+CGG 0.615420 7_2:+82157345 None:intergenic
AGAGGTCTTATCCTAGCAAG+TGG 0.615685 7_2:+82160439 None:intergenic
TCATCACCGATGGCATGAGT+AGG 0.616501 7_2:+82158623 None:intergenic
CTTAGATTTAGCTCGGCGAG+AGG 0.619358 7_2:-82159076 Msa1082180:CDS
AGCACACGACACTTTAGCGA+TGG 0.621416 7_2:+82160867 None:intergenic
ATATCAGCACTAGAAAATGT+TGG 0.624184 7_2:+82159299 None:intergenic
AAAGTGGCGAGACCATGAGT+TGG 0.625466 7_2:-82160272 Msa1082180:CDS
CAATCATGTCCCCACATCTG+AGG 0.628409 7_2:+82159254 None:intergenic
AAATTTGACAAATGTAGAAG+CGG 0.631499 7_2:+82160373 None:intergenic
GATCATCAAGCTGCAAGCAG+AGG 0.631663 7_2:-82157812 Msa1082180:CDS
CGCAAGTGCGATTAGAACGT+CGG 0.632134 7_2:+82161059 None:intergenic
CAAGCATATAGTGGAAGTGG+AGG 0.635632 7_2:-82157788 Msa1082180:CDS
ATGCCATCGGTGATGAAAAG+CGG 0.635694 7_2:-82158616 Msa1082180:CDS
AAGGGAGGTAGATCAGGCGG+CGG 0.636261 7_2:+82161792 None:intergenic
TGTGCCACCTGAAGTTGTTG+CGG 0.636371 7_2:-82160404 Msa1082180:CDS
ATGAACAAGCATAAGTGCAG+TGG 0.643228 7_2:+82160831 None:intergenic
CCTACCCAACTCCACAAGAG+TGG 0.646184 7_2:+82160636 None:intergenic
GATCTACCTACTCATGCCAT+CGG 0.647848 7_2:-82158629 Msa1082180:CDS
CCTCTCCCAAAACACCATGA+AGG 0.651300 7_2:+82158809 None:intergenic
CACATATGGATGGAGAGCGA+GGG 0.654671 7_2:-82157902 Msa1082180:CDS
GGACCTGTTCGATCTAGCAG+TGG 0.657911 7_2:-82158112 Msa1082180:CDS
CGAACCGCAACAACTTCAGG+TGG 0.664993 7_2:+82160400 None:intergenic
CTGTGGATGCCATCAAGAAG+TGG 0.665478 7_2:-82160589 Msa1082180:CDS
AGTGCGCCAAATAGATTAGG+CGG 0.682072 7_2:+82161815 None:intergenic
TTGACAAGAAGTTCATCTGG+AGG 0.684589 7_2:+82161096 None:intergenic
GATGCTGGATAAAACTCAGG+AGG 0.685050 7_2:+82158482 None:intergenic
CTAGCAAGTGGACAAGTGTG+TGG 0.685475 7_2:+82160451 None:intergenic
TCACATGCACCTCAGATGTG+GGG 0.687196 7_2:-82159263 Msa1082180:CDS
AATGCTATAATTGCATGCAT+CGG 0.690508 7_2:+82158991 None:intergenic
GGCATGAGTAGGTAGATCAG+GGG 0.696928 7_2:+82158634 None:intergenic
ATGAAACTACAATATAATCG+GGG 0.698950 7_2:+82157372 None:intergenic
AAGTTTACTCAGTCTCAGAG+TGG 0.708425 7_2:-82158133 Msa1082180:CDS
GTTGTTCCTTAAGAACAAGG+CGG 0.762407 7_2:-82160773 Msa1082180:CDS
GATTGGAGGAATGTGCACTG+TGG 0.783064 7_2:-82160606 Msa1082180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTCTTTTATTTTAT+TGG - chr7_2:82159036-82159055 Msa1082180:CDS 10.0%
!! AAGAAAAAGAAAAAGAAAAA+GGG + chr7_2:82157369-82157388 None:intergenic 15.0%
!! AAAGAAAAAGAAAAAGAAAA+AGG + chr7_2:82157370-82157389 None:intergenic 15.0%
!! AGTATATTAAATAGTAGTAT+TGG + chr7_2:82157684-82157703 None:intergenic 15.0%
!! ATTGATTGATATTCATATGA+AGG + chr7_2:82157406-82157425 None:intergenic 20.0%
!! AAAAAAATATATAGAGAGAG+TGG + chr7_2:82157503-82157522 None:intergenic 20.0%
!!! TAAATAGTAGTATTGGATAA+TGG + chr7_2:82157677-82157696 None:intergenic 20.0%
!! CAAATTTCCAAATTAATGAT+TGG - chr7_2:82158897-82158916 Msa1082180:CDS 20.0%
!!! TTATTGGTTCTTTTTTTTTC+CGG - chr7_2:82159052-82159071 Msa1082180:CDS 20.0%
!! AATTAAGCAATCAAAAGAAA+AGG + chr7_2:82159114-82159133 None:intergenic 20.0%
!! AATAGTTGAAAATTAGGAAA+TGG - chr7_2:82159218-82159237 Msa1082180:intron 20.0%
!! GTATTAAATACAAATATCAC+AGG + chr7_2:82159426-82159445 None:intergenic 20.0%
!! ACTAAATTTAAGAACAAGAT+TGG - chr7_2:82159612-82159631 Msa1082180:intron 20.0%
!! AATAAAAACACTTAAAAGTC+AGG + chr7_2:82159752-82159771 None:intergenic 20.0%
!!! AAAGTTTCAGGTATTTAATT+TGG + chr7_2:82159810-82159829 None:intergenic 20.0%
!!! AAACTTTTCATTCAATTGTA+TGG - chr7_2:82159823-82159842 Msa1082180:intron 20.0%
!! AATTTCAAACACAGTTAATA+TGG + chr7_2:82159885-82159904 None:intergenic 20.0%
!! AATTCAATCACATTAACATA+TGG + chr7_2:82160866-82160885 None:intergenic 20.0%
!!! GATATAAAGATATGCAATTT+TGG + chr7_2:82161578-82161597 None:intergenic 20.0%
!! TTCATTGCATAATATAAACT+TGG - chr7_2:82161768-82161787 Msa1082180:intron 20.0%
!!! TTAGGCTATGTTTTTAAAAT+CGG - chr7_2:82161800-82161819 Msa1082180:five_prime_UTR 20.0%
!! AATGAAACTACAATATAATC+GGG + chr7_2:82161886-82161905 None:intergenic 20.0%
!! CAATGAAACTACAATATAAT+CGG + chr7_2:82161887-82161906 None:intergenic 20.0%
! ATAGAAGACTTCAAGTATAA+AGG + chr7_2:82157308-82157327 None:intergenic 25.0%
!! CAACTCATTTTATAAATCTG+TGG - chr7_2:82158324-82158343 Msa1082180:intron 25.0%
! TTAACTTATCATGTACAAGT+TGG - chr7_2:82158713-82158732 Msa1082180:intron 25.0%
! AAATTTGACAAATGTAGAAG+CGG + chr7_2:82158884-82158903 None:intergenic 25.0%
! ATACGGAATAGAAAATATTC+CGG + chr7_2:82159074-82159093 None:intergenic 25.0%
! AATAGAAAACAACGGAAATA+CGG + chr7_2:82159091-82159110 None:intergenic 25.0%
! AGAAAAGGAATAGAAAACAA+CGG + chr7_2:82159099-82159118 None:intergenic 25.0%
! GCATAGAATAGTTGAAAATT+AGG - chr7_2:82159212-82159231 Msa1082180:intron 25.0%
! AAATAACTATAAAGCCCAAA+TGG + chr7_2:82159258-82159277 None:intergenic 25.0%
! CTTAAGTAAAGAACCATATT+AGG - chr7_2:82159319-82159338 Msa1082180:CDS 25.0%
! TAAGAACAAGATTGGAAAAA+TGG - chr7_2:82159620-82159639 Msa1082180:intron 25.0%
! AAGAACAAGATTGGAAAAAT+GGG - chr7_2:82159621-82159640 Msa1082180:intron 25.0%
! AAATTTACAACAAATGTGTG+TGG - chr7_2:82159724-82159743 Msa1082180:intron 25.0%
! AATTTACAACAAATGTGTGT+GGG - chr7_2:82159725-82159744 Msa1082180:intron 25.0%
!!! GGTATTTAATTTGGTCTTTT+CGG + chr7_2:82159801-82159820 None:intergenic 25.0%
! ACAATTGAATGAAAAGTTTC+AGG + chr7_2:82159822-82159841 None:intergenic 25.0%
!! ATTGAAGAGTAGTAATGTTT+TGG - chr7_2:82160346-82160365 Msa1082180:CDS 25.0%
!!! TTTTTGCCATTTCTAATTCA+AGG + chr7_2:82160421-82160440 None:intergenic 25.0%
! TGTTAATGTGATTGAATTCT+TGG - chr7_2:82160868-82160887 Msa1082180:CDS 25.0%
! GTTAATGTGATTGAATTCTT+GGG - chr7_2:82160869-82160888 Msa1082180:CDS 25.0%
! AAGTCGATAACATAATGAAA+AGG + chr7_2:82160966-82160985 None:intergenic 25.0%
! CAACTGTTAGAAATTAATCT+AGG - chr7_2:82160996-82161015 Msa1082180:CDS 25.0%
! TTAATATGCATTTCACATAG+GGG + chr7_2:82161248-82161267 None:intergenic 25.0%
! GTTAATATGCATTTCACATA+GGG + chr7_2:82161249-82161268 None:intergenic 25.0%
! TGTTAATATGCATTTCACAT+AGG + chr7_2:82161250-82161269 None:intergenic 25.0%
! ATTCAGATTTGTAAATCTCA+TGG - chr7_2:82161324-82161343 Msa1082180:intron 25.0%
! TTCAGATTTGTAAATCTCAT+GGG - chr7_2:82161325-82161344 Msa1082180:intron 25.0%
!! TATAACTAGTTGATACGATA+GGG + chr7_2:82161725-82161744 None:intergenic 25.0%
! ATGAAACTACAATATAATCG+GGG + chr7_2:82161885-82161904 None:intergenic 25.0%
AATATATAGAGAGAGTGGAT+TGG + chr7_2:82157498-82157517 None:intergenic 30.0%
CTAACATGAGCATTATTGAA+TGG + chr7_2:82157541-82157560 None:intergenic 30.0%
!!! AGCTACTGTTTTTTCGTTTT+TGG - chr7_2:82157860-82157879 Msa1082180:CDS 30.0%
ACATAAATAAACCCAATCTG+AGG + chr7_2:82157904-82157923 None:intergenic 30.0%
!!! GTTCTTGTTGATTTTGAACT+TGG - chr7_2:82157959-82157978 Msa1082180:intron 30.0%
! TTTTACAGATCCTTTCATGT+GGG - chr7_2:82158091-82158110 Msa1082180:CDS 30.0%
ACAAAATAAATGAGTTCGAC+AGG + chr7_2:82158233-82158252 None:intergenic 30.0%
TGCTTTCTTTCCATATAGAT+GGG - chr7_2:82158262-82158281 Msa1082180:intron 30.0%
!! GAATGTTGACTCATGAAATT+AGG - chr7_2:82158564-82158583 Msa1082180:CDS 30.0%
GGCAAAAAGTTATGCAATTA+TGG - chr7_2:82158931-82158950 Msa1082180:CDS 30.0%
!! TAGTTATTTCTCAACCATCA+AGG - chr7_2:82159269-82159288 Msa1082180:CDS 30.0%
GAAAAGAAAACGACATAAGA+TGG + chr7_2:82159497-82159516 None:intergenic 30.0%
! AAATCAAAATTAGACTGGCT+CGG + chr7_2:82159534-82159553 None:intergenic 30.0%
!!! AGCCAGTCTAATTTTGATTT+TGG - chr7_2:82159534-82159553 Msa1082180:intron 30.0%
! TTTTGGCCATTGAAGATATA+TGG - chr7_2:82159551-82159570 Msa1082180:intron 30.0%
AGAACAAGATTGGAAAAATG+GGG - chr7_2:82159622-82159641 Msa1082180:intron 30.0%
!! TAATTTGGTCTTTTCGGATT+AGG + chr7_2:82159795-82159814 None:intergenic 30.0%
! CATTCAATTGTATGGCTTTT+AGG - chr7_2:82159831-82159850 Msa1082180:intron 30.0%
ATATCAGCACTAGAAAATGT+TGG + chr7_2:82159958-82159977 None:intergenic 30.0%
!!! AACATTTTCTAGTGCTGATA+TGG - chr7_2:82159957-82159976 Msa1082180:intron 30.0%
! AACTAAATGGATTCAGCATA+TGG + chr7_2:82160069-82160088 None:intergenic 30.0%
! AATCCATTTAGTTTCCATAC+AGG - chr7_2:82160076-82160095 Msa1082180:intron 30.0%
AATGCTATAATTGCATGCAT+CGG + chr7_2:82160266-82160285 None:intergenic 30.0%
CAATACATAAATGCTGTTCA+TGG + chr7_2:82160519-82160538 None:intergenic 30.0%
! TGCTTTTCTATTGTTAATGC+AGG - chr7_2:82160537-82160556 Msa1082180:CDS 30.0%
!!! AGTTTTTTCACAGATGCTAT+AGG + chr7_2:82160580-82160599 None:intergenic 30.0%
CAATGCTGTCAAATATACTA+AGG - chr7_2:82160690-82160709 Msa1082180:CDS 30.0%
GAAAAGGTAGAGATATCTTT+GGG + chr7_2:82160950-82160969 None:intergenic 30.0%
TGAAAAGGTAGAGATATCTT+TGG + chr7_2:82160951-82160970 None:intergenic 30.0%
!! TTGGACTAGCTATTTGTAAA+AGG - chr7_2:82161173-82161192 Msa1082180:intron 30.0%
ACTAGCTATTTGTAAAAGGT+AGG - chr7_2:82161177-82161196 Msa1082180:intron 30.0%
CTAGCTATTTGTAAAAGGTA+GGG - chr7_2:82161178-82161197 Msa1082180:intron 30.0%
CTACATTTGTAGTCAAACTT+GGG - chr7_2:82161395-82161414 Msa1082180:intron 30.0%
!!! AGATATGCAATTTTGGTGTT+TGG + chr7_2:82161571-82161590 None:intergenic 30.0%
ATCTTTATATCAATGTCGAC+TGG - chr7_2:82161587-82161606 Msa1082180:intron 30.0%
! GTATAACTAGTTGATACGAT+AGG + chr7_2:82161726-82161745 None:intergenic 30.0%
! TAAACTTGGAGCAGTATTTT+AGG - chr7_2:82161782-82161801 Msa1082180:intron 30.0%
AAATCAATGGTTGAACTAAC+GGG + chr7_2:82161832-82161851 None:intergenic 30.0%
CAAATCAATGGTTGAACTAA+CGG + chr7_2:82161833-82161852 None:intergenic 30.0%
!! GTTAGTTCAACCATTGATTT+GGG - chr7_2:82161832-82161851 Msa1082180:five_prime_UTR 30.0%
GATATGTTTGTGTTGTGAGT+GGG + chr7_2:82157335-82157354 None:intergenic 35.0%
TGATATGTTTGTGTTGTGAG+TGG + chr7_2:82157336-82157355 None:intergenic 35.0%
CGTAAGATTCGAGTAATTGT+TGG - chr7_2:82157751-82157770 Msa1082180:CDS 35.0%
! ATATTTAGATTCGTGCTGCT+GGG - chr7_2:82157788-82157807 Msa1082180:CDS 35.0%
TCAAACTCAATACCTCAGAT+TGG - chr7_2:82157889-82157908 Msa1082180:CDS 35.0%
CAAACTCAATACCTCAGATT+GGG - chr7_2:82157890-82157909 Msa1082180:CDS 35.0%
ACGGGTTCAAAAACAAAAAG+TGG + chr7_2:82158048-82158067 None:intergenic 35.0%
! CTTTTACAGATCCTTTCATG+TGG - chr7_2:82158090-82158109 Msa1082180:CDS 35.0%
TACTTGACAAGAAGTTCATC+TGG + chr7_2:82158164-82158183 None:intergenic 35.0%
CTGCTTTCTTTCCATATAGA+TGG - chr7_2:82158261-82158280 Msa1082180:intron 35.0%
TGCATAAGAACCCATCTATA+TGG + chr7_2:82158275-82158294 None:intergenic 35.0%
!! GTTTTAACACTCAACAGATC+GGG + chr7_2:82158455-82158474 None:intergenic 35.0%
!! GGTTTTAACACTCAACAGAT+CGG + chr7_2:82158456-82158475 None:intergenic 35.0%
TGTTCTTAAGGAACAACTCA+CGG + chr7_2:82158478-82158497 None:intergenic 35.0%
TGAGTTGTTCCTTAAGAACA+AGG - chr7_2:82158478-82158497 Msa1082180:CDS 35.0%
ATTCTTACTCAGGAAGAAAC+CGG - chr7_2:82158530-82158549 Msa1082180:CDS 35.0%
!! AAATTAGGAGCACTCTTGAT+AGG - chr7_2:82158579-82158598 Msa1082180:CDS 35.0%
! TATTCTAAAGACCACTCTTG+TGG - chr7_2:82158607-82158626 Msa1082180:CDS 35.0%
AGATTCAAACCACTTCTTGA+TGG + chr7_2:82158677-82158696 None:intergenic 35.0%
TTGACAATAGGAAGGTTTGT+TGG + chr7_2:82158749-82158768 None:intergenic 35.0%
AGACTTCATTGACAATAGGA+AGG + chr7_2:82158757-82158776 None:intergenic 35.0%
CTGAAGACTTCATTGACAAT+AGG + chr7_2:82158761-82158780 None:intergenic 35.0%
! ACTTTCTAGCACTATCAGTA+GGG + chr7_2:82158967-82158986 None:intergenic 35.0%
!! CTATTGCTGTGAACTTGTTT+TGG - chr7_2:82159181-82159200 Msa1082180:intron 35.0%
AGGAAATGGCTATCAATCAT+CGG - chr7_2:82159232-82159251 Msa1082180:intron 35.0%
TATTCTGTCTTCTACCTTGA+TGG + chr7_2:82159286-82159305 None:intergenic 35.0%
GGTTCTTTACTTAAGTCACT+AGG + chr7_2:82159314-82159333 None:intergenic 35.0%
AACCATATTAGGTATGCATG+TGG - chr7_2:82159330-82159349 Msa1082180:CDS 35.0%
TCCCAATAAGTGGCTAAAAA+AGG - chr7_2:82159375-82159394 Msa1082180:intron 35.0%
!!! CCCTTTTTTAGCCACTTATT+GGG + chr7_2:82159379-82159398 None:intergenic 35.0%
CCCAATAAGTGGCTAAAAAA+GGG - chr7_2:82159376-82159395 Msa1082180:intron 35.0%
!!! TCCCTTTTTTAGCCACTTAT+TGG + chr7_2:82159380-82159399 None:intergenic 35.0%
AATAAGTGGCTAAAAAAGGG+AGG - chr7_2:82159379-82159398 Msa1082180:intron 35.0%
ATAAGTGGCTAAAAAAGGGA+GGG - chr7_2:82159380-82159399 Msa1082180:intron 35.0%
ATGTGTAAACTATATCGCAG+AGG + chr7_2:82159469-82159488 None:intergenic 35.0%
TCTGCGATATAGTTTACACA+TGG - chr7_2:82159468-82159487 Msa1082180:intron 35.0%
GGCCAAAATCAAAATTAGAC+TGG + chr7_2:82159539-82159558 None:intergenic 35.0%
CTCAATATCAAGACTGAGAT+AGG - chr7_2:82159577-82159596 Msa1082180:intron 35.0%
!! ATGTTGGCGACATTTTGAAA+CGG + chr7_2:82159942-82159961 None:intergenic 35.0%
! TAAATGGATTCAGCATATGG+AGG + chr7_2:82160066-82160085 None:intergenic 35.0%
CTACCTGTATGGAAACTAAA+TGG + chr7_2:82160082-82160101 None:intergenic 35.0%
CAAAATAGCAGCATGTGAAA+GGG + chr7_2:82160111-82160130 None:intergenic 35.0%
TTTCATGATTCATGACTGCA+AGG + chr7_2:82160235-82160254 None:intergenic 35.0%
! AGCATTGTCATCACTTCTTT+TGG - chr7_2:82160280-82160299 Msa1082180:CDS 35.0%
! TGGTAGCCTTGAATTAGAAA+TGG - chr7_2:82160412-82160431 Msa1082180:CDS 35.0%
ATGGCAAAAATCAACCTTCA+TGG - chr7_2:82160431-82160450 Msa1082180:CDS 35.0%
! AATCAACCTTCATGGTGTTT+TGG - chr7_2:82160439-82160458 Msa1082180:CDS 35.0%
! ATCAACCTTCATGGTGTTTT+GGG - chr7_2:82160440-82160459 Msa1082180:CDS 35.0%
GGGGCAAGAATTAAAGTAAT+GGG + chr7_2:82160604-82160623 None:intergenic 35.0%
AGGGGCAAGAATTAAAGTAA+TGG + chr7_2:82160605-82160624 None:intergenic 35.0%
! CAGACACTTTTGAATGTTGT+GGG - chr7_2:82160667-82160686 Msa1082180:CDS 35.0%
TGCTGTCAAATATACTAAGG+AGG - chr7_2:82160693-82160712 Msa1082180:CDS 35.0%
GCTGTCAAATATACTAAGGA+GGG - chr7_2:82160694-82160713 Msa1082180:CDS 35.0%
! TTTTATCCAGCATCAAGTGA+TGG - chr7_2:82160781-82160800 Msa1082180:CDS 35.0%
TCATTTCTATATACGAGTCC+AGG - chr7_2:82160804-82160823 Msa1082180:CDS 35.0%
TCATCCATACCTACATTTCT+AGG - chr7_2:82160918-82160937 Msa1082180:CDS 35.0%
CTTTCCTAGAAATGTAGGTA+TGG + chr7_2:82160925-82160944 None:intergenic 35.0%
AAGAGATGTGGAATATCTTG+TGG + chr7_2:82161097-82161116 None:intergenic 35.0%
GTAAACTTGGTAAAGAGATG+TGG + chr7_2:82161109-82161128 None:intergenic 35.0%
ATTTCACATAGGGGCAATAA+TGG + chr7_2:82161239-82161258 None:intergenic 35.0%
AGATTTGTAAATCTCATGGG+TGG - chr7_2:82161328-82161347 Msa1082180:intron 35.0%
GATTTGTAAATCTCATGGGT+GGG - chr7_2:82161329-82161348 Msa1082180:intron 35.0%
GCTACATTTGTAGTCAAACT+TGG - chr7_2:82161394-82161413 Msa1082180:intron 35.0%
GTAAGTGCTTAAATCTAGCA+AGG + chr7_2:82161492-82161511 None:intergenic 35.0%
! TTACTCAATGATGACGACAT+AGG - chr7_2:82161508-82161527 Msa1082180:intron 35.0%
! CGTTAGTTCAACCATTGATT+TGG - chr7_2:82161831-82161850 Msa1082180:five_prime_UTR 35.0%
AAACCAACTGATGAACTAAC+CGG + chr7_2:82161860-82161879 None:intergenic 35.0%
TTCATTGAACCGAGTTAAAC+TGG - chr7_2:82161900-82161919 Msa1082180:five_prime_UTR 35.0%
TAAACTGGTTGAACCACAAT+TGG - chr7_2:82161915-82161934 Msa1082180:five_prime_UTR 35.0%
AAAACCAGTTGAACCAATTG+TGG + chr7_2:82161931-82161950 None:intergenic 35.0%
AAGTCTCCGCCTAATCTATT+TGG - chr7_2:82157433-82157452 Msa1082180:three_prime_UTR 40.0%
! TGGATTGGATACCGGAAAAA+GGG + chr7_2:82157483-82157502 None:intergenic 40.0%
CATATTTAGATTCGTGCTGC+TGG - chr7_2:82157787-82157806 Msa1082180:CDS 40.0%
ATAGCATAGGTTGTCATCAC+GGG + chr7_2:82158066-82158085 None:intergenic 40.0%
CATAGCATAGGTTGTCATCA+CGG + chr7_2:82158067-82158086 None:intergenic 40.0%
!! CTGTAAAAGCACCATAGCAT+AGG + chr7_2:82158079-82158098 None:intergenic 40.0%
ATCTAACACACCCACATGAA+AGG + chr7_2:82158104-82158123 None:intergenic 40.0%
AGAAGTTCATCTGGAGGATA+AGG + chr7_2:82158155-82158174 None:intergenic 40.0%
TTGACAAGAAGTTCATCTGG+AGG + chr7_2:82158161-82158180 None:intergenic 40.0%
! AGATGGGTTCTTATGCAGTT+TGG - chr7_2:82158278-82158297 Msa1082180:intron 40.0%
! GATGGGTTCTTATGCAGTTT+GGG - chr7_2:82158279-82158298 Msa1082180:intron 40.0%
ATGGGTTCTTATGCAGTTTG+GGG - chr7_2:82158280-82158299 Msa1082180:intron 40.0%
! GGGGCTTTTATTGTTCTATG+TGG - chr7_2:82158299-82158318 Msa1082180:intron 40.0%
ATGAACAAGCATAAGTGCAG+TGG + chr7_2:82158426-82158445 None:intergenic 40.0%
GTTCTTAAGGAACAACTCAC+GGG + chr7_2:82158477-82158496 None:intergenic 40.0%
GTTGTTCCTTAAGAACAAGG+CGG - chr7_2:82158481-82158500 Msa1082180:CDS 40.0%
GATGGGACTTATTCTTACTC+AGG - chr7_2:82158520-82158539 Msa1082180:CDS 40.0%
CAACATTCTCACATGTCTTC+CGG + chr7_2:82158552-82158571 None:intergenic 40.0%
GCTCAGGCCAATCATTAATT+TGG + chr7_2:82158907-82158926 None:intergenic 40.0%
!! TAATGATTGGCCTGAGCTTT+CGG - chr7_2:82158910-82158929 Msa1082180:CDS 40.0%
! TAACTTTTTGCCGAAAGCTC+AGG + chr7_2:82158923-82158942 None:intergenic 40.0%
! CACTTTCTAGCACTATCAGT+AGG + chr7_2:82158968-82158987 None:intergenic 40.0%
! CTACTGATAGTGCTAGAAAG+TGG - chr7_2:82158966-82158985 Msa1082180:CDS 40.0%
AGACTCAGAACAGAACTTAC+AGG + chr7_2:82159159-82159178 None:intergenic 40.0%
CTATCAATCATCGGCCATTT+GGG - chr7_2:82159241-82159260 Msa1082180:intron 40.0%
CTCCACATGCATACCTAATA+TGG + chr7_2:82159335-82159354 None:intergenic 40.0%
TGGCCATTGAAGATATATGG+TGG - chr7_2:82159554-82159573 Msa1082180:intron 40.0%
GAGCCACCATATATCTTCAA+TGG + chr7_2:82159560-82159579 None:intergenic 40.0%
TATCAAGACTGAGATAGGCT+CGG - chr7_2:82159582-82159601 Msa1082180:intron 40.0%
AATCTGATGCAGATCTGTCT+AGG - chr7_2:82159699-82159718 Msa1082180:intron 40.0%
!! TTTGGTCTTTTCGGATTAGG+AGG + chr7_2:82159792-82159811 None:intergenic 40.0%
!!! ACATTTTGAAACGGCAACTG+TGG + chr7_2:82159933-82159952 None:intergenic 40.0%
CCAAAATAGCAGCATGTGAA+AGG + chr7_2:82160112-82160131 None:intergenic 40.0%
!! CCTTTCACATGCTGCTATTT+TGG - chr7_2:82160109-82160128 Msa1082180:intron 40.0%
!!! TTCACATGCTGCTATTTTGG+AGG - chr7_2:82160112-82160131 Msa1082180:intron 40.0%
!! TTTGTTCCATGAGTTGATCC+CGG + chr7_2:82160151-82160170 None:intergenic 40.0%
ACGTTGCCTTAGATTTAGCT+CGG - chr7_2:82160171-82160190 Msa1082180:intron 40.0%
! GCAGACACTTTTGAATGTTG+TGG - chr7_2:82160666-82160685 Msa1082180:CDS 40.0%
TGCAAAACCAGAATCCTTAC+AGG - chr7_2:82160741-82160760 Msa1082180:CDS 40.0%
AACCAGAATCCTTACAGGAT+TGG - chr7_2:82160746-82160765 Msa1082180:CDS 40.0%
CTTGATGCTGGATAAAACTC+AGG + chr7_2:82160778-82160797 None:intergenic 40.0%
AAATGACCATCACTTGATGC+TGG + chr7_2:82160790-82160809 None:intergenic 40.0%
TGCTCAAAGAAGGATGTTTG+GGG + chr7_2:82161046-82161065 None:intergenic 40.0%
CTGCTCAAAGAAGGATGTTT+GGG + chr7_2:82161047-82161066 None:intergenic 40.0%
ATCCTTCTTTGAGCAGGTTA+AGG - chr7_2:82161051-82161070 Msa1082180:CDS 40.0%
ATCCTTAACCTGCTCAAAGA+AGG + chr7_2:82161056-82161075 None:intergenic 40.0%
TTTGAGCAGGTTAAGGATTC+TGG - chr7_2:82161058-82161077 Msa1082180:CDS 40.0%
!! ACTCTGAGACTGAGTAAACT+TGG + chr7_2:82161122-82161141 None:intergenic 40.0%
AAGTTTACTCAGTCTCAGAG+TGG - chr7_2:82161121-82161140 Msa1082180:CDS 40.0%
GTAGTCAAACTTGGGATTTG+TGG - chr7_2:82161403-82161422 Msa1082180:intron 40.0%
GCTGTTTGCAGCTATAGATT+AGG - chr7_2:82161654-82161673 Msa1082180:intron 40.0%
GTGGTTCAACCAGTTTAACT+CGG + chr7_2:82161912-82161931 None:intergenic 40.0%
! TGAACCACAATTGGTTCAAC+TGG - chr7_2:82161924-82161943 Msa1082180:five_prime_UTR 40.0%
AGTGCGCCAAATAGATTAGG+CGG + chr7_2:82157442-82157461 None:intergenic 45.0%
AAAAAGGGAGGTAGATCAGG+CGG + chr7_2:82157468-82157487 None:intergenic 45.0%
! CTGATCTACCTCCCTTTTTC+CGG - chr7_2:82157469-82157488 Msa1082180:three_prime_UTR 45.0%
ATTGGATACCGGAAAAAGGG+AGG + chr7_2:82157480-82157499 None:intergenic 45.0%
!! GTGGATTGGATACCGGAAAA+AGG + chr7_2:82157484-82157503 None:intergenic 45.0%
!! AGAGAGAGTGGATTGGATAC+CGG + chr7_2:82157491-82157510 None:intergenic 45.0%
CGTGATGACAACCTATGCTA+TGG - chr7_2:82158065-82158084 Msa1082180:intron 45.0%
CATGTGGGTGTGTTAGATGA+TGG - chr7_2:82158106-82158125 Msa1082180:CDS 45.0%
GAAGAGCTTGATAGGGAGAT+GGG - chr7_2:82158503-82158522 Msa1082180:CDS 45.0%
AAAGACCACTCTTGTGGAGT+TGG - chr7_2:82158613-82158632 Msa1082180:CDS 45.0%
AAGACCACTCTTGTGGAGTT+GGG - chr7_2:82158614-82158633 Msa1082180:CDS 45.0%
!! GTTGGGTAGGACTTTAGGAT+TGG - chr7_2:82158631-82158650 Msa1082180:CDS 45.0%
TGTGGTATACGCATAGCTCT+CGG + chr7_2:82158788-82158807 None:intergenic 45.0%
! AGAGGTCTTATCCTAGCAAG+TGG + chr7_2:82158818-82158837 None:intergenic 45.0%
GCTAGGATAAGACCTCTTGT+CGG - chr7_2:82158821-82158840 Msa1082180:CDS 45.0%
TGTCGATGTTGTTGCAGATC+AGG - chr7_2:82159009-82159028 Msa1082180:CDS 45.0%
GCTATCAATCATCGGCCATT+TGG - chr7_2:82159240-82159259 Msa1082180:intron 45.0%
AGCCACTTATTGGGATTCAG+CGG + chr7_2:82159370-82159389 None:intergenic 45.0%
ATCAAGACTGAGATAGGCTC+GGG - chr7_2:82159583-82159602 Msa1082180:intron 45.0%
!! TTGTTCCATGAGTTGATCCC+GGG + chr7_2:82160150-82160169 None:intergenic 45.0%
TCTATCATAACCCTCTGCTC+TGG + chr7_2:82160320-82160339 None:intergenic 45.0%
TGGCATGAGTAGGTAGATCA+GGG + chr7_2:82160624-82160643 None:intergenic 45.0%
ATGGCATGAGTAGGTAGATC+AGG + chr7_2:82160625-82160644 None:intergenic 45.0%
GATCTACCTACTCATGCCAT+CGG - chr7_2:82160625-82160644 Msa1082180:CDS 45.0%
ATGCCATCGGTGATGAAAAG+CGG - chr7_2:82160638-82160657 Msa1082180:CDS 45.0%
GATGCTGGATAAAACTCAGG+AGG + chr7_2:82160775-82160794 None:intergenic 45.0%
ACGAGTCCAGGTTATGACTT+TGG - chr7_2:82160816-82160835 Msa1082180:CDS 45.0%
GAGATGCCAAAGTCATAACC+TGG + chr7_2:82160825-82160844 None:intergenic 45.0%
GGGCTCTTTCCTAGAAATGT+AGG + chr7_2:82160930-82160949 None:intergenic 45.0%
CCTGCTCAAAGAAGGATGTT+TGG + chr7_2:82161048-82161067 None:intergenic 45.0%
CCAAACATCCTTCTTTGAGC+AGG - chr7_2:82161045-82161064 Msa1082180:CDS 45.0%
CAGGTTAAGGATTCTGGATG+TGG - chr7_2:82161064-82161083 Msa1082180:CDS 45.0%
!! GGCAATAATGGTGACTTGCT+AGG + chr7_2:82161227-82161246 None:intergenic 45.0%
! TCTGCTTGCAGCTTGATGAT+CGG + chr7_2:82161443-82161462 None:intergenic 45.0%
CTCCACTTCCACTATATGCT+TGG + chr7_2:82161468-82161487 None:intergenic 45.0%
! CAAGCATATAGTGGAAGTGG+AGG - chr7_2:82161466-82161485 Msa1082180:intron 45.0%
!! TCAACCATTGATTTGGGAGC+CGG - chr7_2:82161838-82161857 Msa1082180:five_prime_UTR 45.0%
!! AAAAAAAAAAAAAATAGTAT+AGG + chr7_2:82157723-82157742 None:intergenic 5.0%
CGGAGTGCGCCAAATAGATT+AGG + chr7_2:82157445-82157464 None:intergenic 50.0%
CGGAAAAAGGGAGGTAGATC+AGG + chr7_2:82157471-82157490 None:intergenic 50.0%
CGCAAGTGCGATTAGAACGT+CGG + chr7_2:82158198-82158217 None:intergenic 50.0%
AGCACACGACACTTTAGCGA+TGG + chr7_2:82158390-82158409 None:intergenic 50.0%
! GCTCTTCCGCCTTGTTCTTA+AGG + chr7_2:82158490-82158509 None:intergenic 50.0%
ACAAGGCGGAAGAGCTTGAT+AGG - chr7_2:82158495-82158514 Msa1082180:CDS 50.0%
CAAGGCGGAAGAGCTTGATA+GGG - chr7_2:82158496-82158515 Msa1082180:CDS 50.0%
GGAAGAGCTTGATAGGGAGA+TGG - chr7_2:82158502-82158521 Msa1082180:CDS 50.0%
GTGGAGTTGGGTAGGACTTT+AGG - chr7_2:82158626-82158645 Msa1082180:CDS 50.0%
!! GGGTAGGACTTTAGGATTGG+AGG - chr7_2:82158634-82158653 Msa1082180:CDS 50.0%
GATTGGAGGAATGTGCACTG+TGG - chr7_2:82158648-82158667 Msa1082180:CDS 50.0%
CTGTGGATGCCATCAAGAAG+TGG - chr7_2:82158665-82158684 Msa1082180:CDS 50.0%
GTGGTATACGCATAGCTCTC+GGG + chr7_2:82158787-82158806 None:intergenic 50.0%
CTAGCAAGTGGACAAGTGTG+TGG + chr7_2:82158806-82158825 None:intergenic 50.0%
CACACACTTGTCCACTTGCT+AGG - chr7_2:82158804-82158823 Msa1082180:intron 50.0%
GGCACATATCTTCCGACAAG+AGG + chr7_2:82158836-82158855 None:intergenic 50.0%
TGTGCCACCTGAAGTTGTTG+CGG - chr7_2:82158850-82158869 Msa1082180:CDS 50.0%
CACCTGAAGTTGTTGCGGTT+CGG - chr7_2:82158855-82158874 Msa1082180:CDS 50.0%
ACCTGAAGTTGTTGCGGTTC+GGG - chr7_2:82158856-82158875 Msa1082180:CDS 50.0%
AAAGTGGCGAGACCATGAGT+TGG - chr7_2:82158982-82159001 Msa1082180:CDS 50.0%
CATCGACAAGCTCCAACTCA+TGG + chr7_2:82158997-82159016 None:intergenic 50.0%
CTCACATGCACCTCAGATGT+GGG - chr7_2:82159990-82160009 Msa1082180:intron 50.0%
TCACATGCACCTCAGATGTG+GGG - chr7_2:82159991-82160010 Msa1082180:intron 50.0%
CAATCATGTCCCCACATCTG+AGG + chr7_2:82160003-82160022 None:intergenic 50.0%
AAGGGCAACTGCTACCTGTA+TGG + chr7_2:82160093-82160112 None:intergenic 50.0%
CTCTCGCCGAGCTAAATCTA+AGG + chr7_2:82160180-82160199 None:intergenic 50.0%
! CTTAGATTTAGCTCGGCGAG+AGG - chr7_2:82160178-82160197 Msa1082180:intron 50.0%
! TGAACTGACTCCAGAGCAGA+GGG - chr7_2:82160307-82160326 Msa1082180:CDS 50.0%
AAGGCTACCATCTTCCAGTC+GGG + chr7_2:82160402-82160421 None:intergenic 50.0%
CAAGGCTACCATCTTCCAGT+CGG + chr7_2:82160403-82160422 None:intergenic 50.0%
CCTCTCCCAAAACACCATGA+AGG + chr7_2:82160448-82160467 None:intergenic 50.0%
!!! CCTTCATGGTGTTTTGGGAG+AGG - chr7_2:82160445-82160464 Msa1082180:CDS 50.0%
GGCATGAGTAGGTAGATCAG+GGG + chr7_2:82160623-82160642 None:intergenic 50.0%
TCATCACCGATGGCATGAGT+AGG + chr7_2:82160634-82160653 None:intergenic 50.0%
!!! AAGCCGCTTTTCATCACCGA+TGG + chr7_2:82160644-82160663 None:intergenic 50.0%
CGCCAATCCTGTAAGGATTC+TGG + chr7_2:82160751-82160770 None:intergenic 50.0%
! GTTTGGGGTCAGTCATGAGA+TGG + chr7_2:82161031-82161050 None:intergenic 50.0%
GAACCACTGCTAGATCGAAC+AGG + chr7_2:82161148-82161167 None:intergenic 50.0%
GTTCGATCTAGCAGTGGTTC+AGG - chr7_2:82161148-82161167 Msa1082180:exon 50.0%
TCTAGCAGTGGTTCAGGTCT+TGG - chr7_2:82161154-82161173 Msa1082180:exon 50.0%
ATCTCATGGGTGGGCACATA+TGG - chr7_2:82161338-82161357 Msa1082180:intron 50.0%
CACATATGGATGGAGAGCGA+GGG - chr7_2:82161352-82161371 Msa1082180:intron 50.0%
! CTTGCAGCTTGATGATCGGA+TGG + chr7_2:82161439-82161458 None:intergenic 50.0%
GATCATCAAGCTGCAAGCAG+AGG - chr7_2:82161442-82161461 Msa1082180:intron 50.0%
AGCAGAGGCCAAGCATATAG+TGG - chr7_2:82161457-82161476 Msa1082180:intron 50.0%
! GGCCAAGCATATAGTGGAAG+TGG - chr7_2:82161463-82161482 Msa1082180:intron 50.0%
! CTAACCGGCTCCCAAATCAA+TGG + chr7_2:82161845-82161864 None:intergenic 50.0%
! GAGCCGGTTAGTTCATCAGT+TGG - chr7_2:82161854-82161873 Msa1082180:five_prime_UTR 50.0%
CCTACCCAACTCCACAAGAG+TGG + chr7_2:82158621-82158640 None:intergenic 55.0%
CCACTCTTGTGGAGTTGGGT+AGG - chr7_2:82158618-82158637 Msa1082180:CDS 55.0%
CGAACCGCAACAACTTCAGG+TGG + chr7_2:82158857-82158876 None:intergenic 55.0%
ACCCGAACCGCAACAACTTC+AGG + chr7_2:82158860-82158879 None:intergenic 55.0%
TGCATGTGGAGTATGCGCTG+AGG - chr7_2:82159344-82159363 Msa1082180:intron 55.0%
GGCCGCTGAATCCCAATAAG+TGG - chr7_2:82159365-82159384 Msa1082180:intron 55.0%
GTGGCTAAAAAAGGGAGGGC+AGG - chr7_2:82159384-82159403 Msa1082180:intron 55.0%
! AGGAGGCATGTGCAGGCAAA+GGG + chr7_2:82159775-82159794 None:intergenic 55.0%
! TAGGAGGCATGTGCAGGCAA+AGG + chr7_2:82159776-82159795 None:intergenic 55.0%
! TCGGATTAGGAGGCATGTGC+AGG + chr7_2:82159782-82159801 None:intergenic 55.0%
! CCACATCTGAGGTGCATGTG+AGG + chr7_2:82159992-82160011 None:intergenic 55.0%
CCTCACATGCACCTCAGATG+TGG - chr7_2:82159989-82160008 Msa1082180:intron 55.0%
! CTGAACTGACTCCAGAGCAG+AGG - chr7_2:82160306-82160325 Msa1082180:CDS 55.0%
TGTTCTCGATCTGTCCCGAC+TGG - chr7_2:82160385-82160404 Msa1082180:CDS 55.0%
GATCTGTCCCGACTGGAAGA+TGG - chr7_2:82160392-82160411 Msa1082180:CDS 55.0%
AGGAGGTCGCCAATCCTGTA+AGG + chr7_2:82160758-82160777 None:intergenic 55.0%
GGACCTGTTCGATCTAGCAG+TGG - chr7_2:82161142-82161161 Msa1082180:exon 55.0%
CATGGGTGGGCACATATGGA+TGG - chr7_2:82161342-82161361 Msa1082180:intron 55.0%
GCACATATGGATGGAGAGCG+AGG - chr7_2:82161351-82161370 Msa1082180:intron 55.0%
GAGAGCGAGGGTCACGATAA+AGG - chr7_2:82161364-82161383 Msa1082180:intron 55.0%
AAGGGAGGTAGATCAGGCGG+CGG + chr7_2:82157465-82157484 None:intergenic 60.0%
AGCTCGGCGAGAGGCTGAAA+TGG - chr7_2:82160187-82160206 Msa1082180:intron 60.0%
TGGAGGAGTCCATGCGAGCC+CGG - chr7_2:82160129-82160148 Msa1082180:intron 65.0%
! GAGTTGATCCCGGGCTCGCA+TGG + chr7_2:82160141-82160160 None:intergenic 65.0%
GCGAGCCCGGGATCAACTCA+TGG - chr7_2:82160142-82160161 Msa1082180:intron 65.0%
GGAGGAGTCCATGCGAGCCC+GGG - chr7_2:82160130-82160149 Msa1082180:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 82157290 82161986 82157290 ID=Msa1082180;Name=Msa1082180
chr7_2 mRNA 82157290 82161986 82157290 ID=Msa1082180-mRNA-1;Parent=Msa1082180;Name=Msa1082180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=224|0.66|0.85|0.85|0.83|0.71|7|422|669
chr7_2 exon 82157290 82157946 82157290 ID=Msa1082180-mRNA-1:exon:21219;Parent=Msa1082180-mRNA-1
chr7_2 exon 82158082 82158209 82158082 ID=Msa1082180-mRNA-1:exon:21218;Parent=Msa1082180-mRNA-1
chr7_2 exon 82158451 82158717 82158451 ID=Msa1082180-mRNA-1:exon:21217;Parent=Msa1082180-mRNA-1
chr7_2 exon 82158810 82159178 82158810 ID=Msa1082180-mRNA-1:exon:21216;Parent=Msa1082180-mRNA-1
chr7_2 exon 82159253 82159354 82159253 ID=Msa1082180-mRNA-1:exon:21215;Parent=Msa1082180-mRNA-1
chr7_2 exon 82160246 82161177 82160246 ID=Msa1082180-mRNA-1:exon:21214;Parent=Msa1082180-mRNA-1
chr7_2 exon 82161786 82161986 82161786 ID=Msa1082180-mRNA-1:exon:21213;Parent=Msa1082180-mRNA-1
chr7_2 five_prime_UTR 82161786 82161986 82161786 ID=Msa1082180-mRNA-1:five_prime_utr;Parent=Msa1082180-mRNA-1
chr7_2 five_prime_UTR 82161155 82161177 82161155 ID=Msa1082180-mRNA-1:five_prime_utr;Parent=Msa1082180-mRNA-1
chr7_2 CDS 82160246 82161154 82160246 ID=Msa1082180-mRNA-1:cds;Parent=Msa1082180-mRNA-1
chr7_2 CDS 82159253 82159354 82159253 ID=Msa1082180-mRNA-1:cds;Parent=Msa1082180-mRNA-1
chr7_2 CDS 82158810 82159178 82158810 ID=Msa1082180-mRNA-1:cds;Parent=Msa1082180-mRNA-1
chr7_2 CDS 82158451 82158717 82158451 ID=Msa1082180-mRNA-1:cds;Parent=Msa1082180-mRNA-1
chr7_2 CDS 82158082 82158209 82158082 ID=Msa1082180-mRNA-1:cds;Parent=Msa1082180-mRNA-1
chr7_2 CDS 82157712 82157946 82157712 ID=Msa1082180-mRNA-1:cds;Parent=Msa1082180-mRNA-1
chr7_2 three_prime_UTR 82157290 82157711 82157290 ID=Msa1082180-mRNA-1:three_prime_utr;Parent=Msa1082180-mRNA-1
Gene Sequence

>Msa1082180

ATGATGGAGTCTTGCGAGTGTATCGACACGCCTTATCCTCCAGATGAACTTCTTGTCAAGTATCAATACATCTCCGACGTTCTAATCGCACTTGCGTATTTCTCAATTCCTGTCGAACTCATTTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTTCTTATGCAGTTTGGGGCTTTTATTGTTCTATGTGGAGCAACTCATTTTATAAATCTGTGGACATTCTCAGCTCACACGAAAGCTGTTGCTGTTGTAATGACCATCGCTAAAGTGTCGTGTGCTATTGTCTCATGTGCCACTGCACTTATGCTTGTTCATATTATTCCCGATCTGTTGAGTGTTAAAACCCGTGAGTTGTTCCTTAAGAACAAGGCGGAAGAGCTTGATAGGGAGATGGGACTTATTCTTACTCAGGAAGAAACCGGAAGACATGTGAGAATGTTGACTCATGAAATTAGGAGCACTCTTGATAGGCATACTATTCTAAAGACCACTCTTGTGGAGTTGGGTAGGACTTTAGGATTGGAGGAATGTGCACTGTGGATGCCATCAAGAAGTGGTTTGAATCTACAACTTTCTCATACTTTAACTTATCATGTACAAGTTGGTTCTACTGTGCCAACAAACCTTCCTATTGTCAATGAAGTCTTCAGTAACCCGAGAGCTATGCGTATACCACACACTTGTCCACTTGCTAGGATAAGACCTCTTGTCGGAAGATATGTGCCACCTGAAGTTGTTGCGGTTCGGGTGCCGCTTCTACATTTGTCAAATTTCCAAATTAATGATTGGCCTGAGCTTTCGGCAAAAAGTTATGCAATTATGGTTCTTATTCTCCCTACTGATAGTGCTAGAAAGTGGCGAGACCATGAGTTGGAGCTTGTCGATGTTGTTGCAGATCAGATATCGCGCCACAGTTGCCGTTTCAAAATGTCGCCAACATTTTCTAGTGCTGATATGGCATTTGTTTCCTCACATGCACCTCAGATGTGGGGACATGATTGTGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCCATGCGAGCCCGGGATCAACTCATGGAACAAAACGTTGCCTTAGATTTAGCTCGGCGAGAGGCTGAAATGGCAATTCATGCTCGCAATGATTTCCTTGCAGTCATGAATCATGAAATGAGAACACCGATGCATGCAATTATAGCATTGTCATCACTTCTTTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACTGTATTGAAGAGTAGTAATGTTTTGGCAGCACTTATCAATGATGTTCTCGATCTGTCCCGACTGGAAGATGGTAGCCTTGAATTAGAAATGGCAAAAATCAACCTTCATGGTGTTTTGGGAGAGGTCATTGAACTGATTAAGCCTATAGCATCTGTGAAAAAACTACCCATTACTTTAATTCTTGCCCCTGATCTACCTACTCATGCCATCGGTGATGAAAAGCGGCTTATGCAGACACTTTTGAATGTTGTGGGCAATGCTGTCAAATATACTAAGGAGGGCTATGTTTCTATAAGAGCTTCTGTTGCAAAACCAGAATCCTTACAGGATTGGCGACCTCCTGAGTTTTATCCAGCATCAAGTGATGGTCATTTCTATATACGAGTCCAGGTTAAGGATTCTGGATGTGGCATTCTACCACAAGATATTCCACATCTCTTTACCAAGTTTACTCAGTCTCAGAGTGGACCTGTTCGATCTAGCAGTGGTTCAGGTCTTGGACTAGCTATTTGTAAAAGATTTGTAAATCTCATGGGTGGGCACATATGGATGGAGAGCGAGGGTCACGATAAAGGAAGCACAGCTACATTTGTAGTCAAACTTGGGATTTGTGGCAATGCAGATCCATCCGATCATCAAGCTGCAAGCAGAGGCCAAGCATATAGTGGAAGTGGAGGCCTTGCTAGATTTAAGCACTTACTCAATGATGACGACATAGGTTTTTCTAATAGACGCAATCAAAGAAGTTTCTGA
Protein sequence

>Msa1082180

MMESCECIDTPYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSAHTKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVPTNLPIVNEVFSNPRAMRIPHTCPLARIRPLVGRYVPPEVVAVRVPLLHLSNFQINDWPELSAKSYAIMVLILPTDSARKWRDHELELVDVVADQISRHSCRFKMSPTFSSADMAFVSSHAPQMWGHDCVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMAKINLHGVLGEVIELIKPIASVKKLPITLILAPDLPTHAIGDEKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFTQSQSGPVRSSSGSGLGLAICKRFVNLMGGHIWMESEGHDKGSTATFVVKLGICGNADPSDHQAASRGQAYSGSGGLARFKHLLNDDDIGFSNRRNQRSF*