AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165630 MtrunA17_Chr7g0269631 99.843 635 1 0 1 635 1 635 0.0 1310
Msa1165630 MtrunA17_Chr4g0013831 73.194 623 167 0 1 623 1 623 0.0 942
Msa1165630 MtrunA17_Chr1g0186431 42.007 588 325 9 5 586 29 606 1.37e-140 427
Msa1165630 MtrunA17_Chr1g0168161 40.210 572 323 11 5 567 28 589 7.65e-128 394
Msa1165630 MtrunA17_Chr7g0274831 38.035 631 325 15 5 598 34 635 7.75e-122 379
Msa1165630 MtrunA17_Chr1g0190021 38.088 638 358 15 3 623 26 643 2.88e-120 375
Msa1165630 MtrunA17_Chr5g0405701 33.721 258 145 4 334 567 499 754 9.93e-36 144
Msa1165630 MtrunA17_Chr3g0136601 32.258 341 179 11 300 596 331 663 1.25e-33 137
Msa1165630 MtrunA17_Chr8g0371601 32.031 256 152 3 334 567 461 716 5.56e-33 135
Msa1165630 MtrunA17_Chr8g0377481 30.357 280 162 4 335 582 383 661 2.13e-32 134
Msa1165630 MtrunA17_Chr3g0122391 28.333 300 175 5 335 598 431 726 8.11e-32 132
Msa1165630 MtrunA17_Chr5g0447641 30.389 283 158 5 338 582 611 892 6.59e-29 123
Msa1165630 MtrunA17_Chr8g0392301 30.820 305 156 6 338 588 377 680 7.56e-29 122
Msa1165630 MtrunA17_Chr1g0150511 32.973 185 116 4 300 483 337 514 2.42e-20 95.9
Msa1165630 MtrunA17_Chr1g0150511 38.393 112 64 3 484 592 585 694 8.15e-12 68.6
Msa1165630 MtrunA17_Chr1g0194741 26.846 298 160 11 312 563 367 652 2.03e-15 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165630 AT2G40940.1 76.962 599 138 0 2 600 1 599 0.0 935
Msa1165630 AT1G66340.1 71.383 622 174 1 2 623 1 618 0.0 900
Msa1165630 AT3G23150.2 40.555 577 306 14 5 562 32 590 1.41e-120 371
Msa1165630 AT3G23150.1 40.722 582 308 14 5 567 32 595 7.96e-120 374
Msa1165630 AT3G04580.2 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa1165630 AT3G04580.1 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa1165630 AT1G04310.1 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa1165630 AT1G04310.2 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa1165630 AT5G10720.1 32.500 320 186 8 323 619 339 651 9.92e-38 150
Msa1165630 AT2G17820.1 32.246 276 161 5 314 567 472 743 4.04e-35 142
Msa1165630 AT1G27320.1 29.885 348 185 7 266 582 398 717 6.85e-35 142
Msa1165630 AT5G35750.1 30.405 296 165 7 335 593 578 869 5.64e-31 130
Msa1165630 AT2G01830.5 29.545 308 165 5 338 597 455 758 3.00e-30 127
Msa1165630 AT2G01830.1 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165630 AT2G01830.4 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165630 AT2G01830.6 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165630 AT2G01830.3 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165630 AT2G01830.2 29.545 308 165 5 338 597 466 769 3.58e-30 127
Msa1165630 AT2G47430.1 27.491 291 167 10 334 586 385 669 1.60e-16 84.3
Msa1165630 AT4G16250.1 23.577 246 161 8 326 567 914 1136 6.27e-11 66.2

Find 175 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCACATGCTGCTATTT+TGG 0.127774 7_4:+57584068 Msa1165630:CDS
GATATAAAGATATGCAATTT+TGG 0.178667 7_4:-57585534 None:intergenic
GCTCAGGCCAATCATTAATT+TGG 0.179813 7_4:-57582889 None:intergenic
TTTGTGCAGGTTAAGGATTC+TGG 0.190806 7_4:+57585017 Msa1165630:intron
GGAAATGAAGAAGAAGAAAA+AGG 0.211101 7_4:-57581368 None:intergenic
AATCAACCTTCATGGTGTTT+TGG 0.215357 7_4:+57584398 Msa1165630:CDS
CTGCTTTCTTTCCATATAGA+TGG 0.223591 7_4:+57582246 Msa1165630:CDS
GTGGAGTTGGGTAGGACTTT+AGG 0.238818 7_4:+57582611 Msa1165630:CDS
GATGGGTTCTTATGCAGTTT+GGG 0.252158 7_4:+57582264 Msa1165630:CDS
AGCATTGTCATCACTTCTTT+TGG 0.253771 7_4:+57584239 Msa1165630:CDS
CGCCAATCCTGTAAGGATTC+TGG 0.273695 7_4:-57584707 None:intergenic
TTGGACTAGCTATTTGTAAA+AGG 0.274567 7_4:+57585132 Msa1165630:CDS
CGTTAGTTCAACCATTGATT+TGG 0.279070 7_4:+57585789 Msa1165630:three_prime_UTR
AGTGGATTGATACCGGAAAA+AGG 0.289080 7_4:-57581467 None:intergenic
GCTCTTCCGCCTTGTTCTTA+AGG 0.299367 7_4:-57582472 None:intergenic
AGATGGGTTCTTATGCAGTT+TGG 0.302430 7_4:+57582263 Msa1165630:CDS
ACAAGGCGGAAGAGCTTGAT+AGG 0.308682 7_4:+57582480 Msa1165630:CDS
TGCAAAACCAGAATCCTTAC+AGG 0.315260 7_4:+57584700 Msa1165630:CDS
CAATGAAACTACAATATAAT+CGG 0.315913 7_4:-57585842 None:intergenic
TGCATAAGAACCCATCTATA+TGG 0.316824 7_4:-57582257 None:intergenic
AAGTCTCCGCCTAATCTATT+TGG 0.318508 7_4:+57581419 Msa1165630:five_prime_UTR
CAACATTCTCACATGTCTTC+CGG 0.319637 7_4:-57582534 None:intergenic
ATCTCATGGGTGGGCACATA+TGG 0.329280 7_4:+57585297 Msa1165630:CDS
TAATGATTGGCCTGAGCTTT+CGG 0.339005 7_4:+57582895 Msa1165630:CDS
CACCTGAAGTTGTTGCGGTT+CGG 0.344532 7_4:+57582840 Msa1165630:CDS
CAAATTTCCAAATTAATGAT+TGG 0.349017 7_4:+57582882 Msa1165630:CDS
TCTAGCAGTGGTTCAGGTCT+TGG 0.350863 7_4:+57585113 Msa1165630:CDS
TTCATTGAACCGAGTTAAAC+TGG 0.353085 7_4:+57585858 Msa1165630:three_prime_UTR
ATTGAAGAGTAGTAATGTTT+TGG 0.359573 7_4:+57584305 Msa1165630:CDS
CTGAAGACTTCATTGACAAT+AGG 0.366052 7_4:-57582743 None:intergenic
TGAACCACAATTGGTTCAAC+TGG 0.370506 7_4:+57585882 Msa1165630:three_prime_UTR
ATAGAAGACTTCAAGTATAA+AGG 0.374332 7_4:-57581307 None:intergenic
GAATGTTGACTCATGAAATT+AGG 0.375510 7_4:+57582549 Msa1165630:CDS
GAGAGCGAGGGTCACGATAA+AGG 0.377013 7_4:+57585323 Msa1165630:CDS
GCTGTTTGCAGCTATAGATT+AGG 0.378023 7_4:+57585613 Msa1165630:three_prime_UTR
ACCTGAAGTTGTTGCGGTTC+GGG 0.378789 7_4:+57582841 Msa1165630:CDS
TGTCGATGTTGTTGCAGATC+AGG 0.380378 7_4:+57582994 Msa1165630:CDS
GTTAGTTCAACCATTGATTT+GGG 0.382348 7_4:+57585790 Msa1165630:three_prime_UTR
CTCTCGCCGAGCTAAATCTA+AGG 0.393829 7_4:-57584136 None:intergenic
TAAACTGGTTGAACCACAAT+TGG 0.408863 7_4:+57585873 Msa1165630:three_prime_UTR
ATGGCATGAGTAGGTAGATC+AGG 0.413426 7_4:-57584581 None:intergenic
AGATTCAAACCACTTCTTGA+TGG 0.415200 7_4:-57582659 None:intergenic
GTTCGATCTAGCAGTGGTTC+AGG 0.425531 7_4:+57585107 Msa1165630:CDS
CTCCACTTCCACTATATGCT+TGG 0.434484 7_4:-57585424 None:intergenic
ATTCATTGCTTAATATAACT+TGG 0.435679 7_4:+57585726 Msa1165630:three_prime_UTR
AAATTAGGAGCACTCTTGAT+AGG 0.435699 7_4:+57582564 Msa1165630:CDS
GGGGCAAGAATTAAAGTAAT+GGG 0.436802 7_4:-57584560 None:intergenic
GAGTTGATCCCGGGCTCGCA+TGG 0.439303 7_4:-57584097 None:intergenic
TACTTGACAAGAAGTTCATC+TGG 0.439756 7_4:-57582146 None:intergenic
AGCTCGGCGAGAGGCTGAAA+TGG 0.447274 7_4:+57584146 Msa1165630:CDS
AATGAAACTACAATATAATC+GGG 0.448185 7_4:-57585841 None:intergenic
ATTGATTGATATTCATATGA+AGG 0.448953 7_4:-57581389 None:intergenic
GCTACATTTGTAGTCAAACT+TGG 0.452125 7_4:+57585353 Msa1165630:CDS
GGGTAGGACTTTAGGATTGG+AGG 0.452722 7_4:+57582619 Msa1165630:CDS
ACCCGAACCGCAACAACTTC+AGG 0.453206 7_4:-57582842 None:intergenic
GGCCAAGCATATAGTGGAAG+TGG 0.455936 7_4:+57585422 Msa1165630:CDS
ATTCAGATTTGTAAATCTCA+TGG 0.457675 7_4:+57585283 Msa1165630:intron
ATTCTTACTCAGGAAGAAAC+CGG 0.461381 7_4:+57582515 Msa1165630:CDS
CCAAAATAGCAGCATGTGAA+AGG 0.461533 7_4:-57584068 None:intergenic
TTGTTCCATGAGTTGATCCC+GGG 0.464658 7_4:-57584106 None:intergenic
AGCAGAGGCCAAGCATATAG+TGG 0.467264 7_4:+57585416 Msa1165630:CDS
AGAAGTTCATCTGGAGGATA+AGG 0.468819 7_4:-57582137 None:intergenic
TTGACAATAGGAAGGTTTGT+TGG 0.470136 7_4:-57582731 None:intergenic
AAAGACCACTCTTGTGGAGT+TGG 0.471472 7_4:+57582598 Msa1165630:CDS
AAATCAATGGTTGAACTAAC+GGG 0.472002 7_4:-57585787 None:intergenic
TGGTAGCCTTGAATTAGAAA+TGG 0.472836 7_4:+57584371 Msa1165630:CDS
GTAGTCAAACTTGGGATTTG+TGG 0.473180 7_4:+57585362 Msa1165630:CDS
TGCTTTCTTTCCATATAGAT+GGG 0.474314 7_4:+57582247 Msa1165630:CDS
TTTGTTCCATGAGTTGATCC+CGG 0.480126 7_4:-57584107 None:intergenic
AAGACCACTCTTGTGGAGTT+GGG 0.480183 7_4:+57582599 Msa1165630:CDS
CAAATCAATGGTTGAACTAA+CGG 0.485230 7_4:-57585788 None:intergenic
ACAAAATAAATGAGTTCGAC+AGG 0.487975 7_4:-57582215 None:intergenic
GTTGGGTAGGACTTTAGGAT+TGG 0.493614 7_4:+57582616 Msa1165630:CDS
TGGAGGAGTCCATGCGAGCC+CGG 0.494071 7_4:+57584088 Msa1165630:CDS
TGTGGTATACGCATAGCTCT+CGG 0.503245 7_4:-57582770 None:intergenic
TCAACCATTGATTTGGGAGT+CGG 0.504463 7_4:+57585796 Msa1165630:three_prime_UTR
GTGTTATGTTTGTGTTGTGG+TGG 0.509426 7_4:-57581335 None:intergenic
TCTATCATAACCCTCTGCTC+TGG 0.509698 7_4:-57584276 None:intergenic
GAACCACTGCTAGATCGAAC+AGG 0.510532 7_4:-57585104 None:intergenic
GGAGGAGTCCATGCGAGCCC+GGG 0.516805 7_4:+57584089 Msa1165630:CDS
GTTCTTAAGGAACAACTCAC+GGG 0.520997 7_4:-57582459 None:intergenic
AACCAGAATCCTTACAGGAT+TGG 0.521860 7_4:+57584705 Msa1165630:CDS
CGGAGTGCGCCAAATAGATT+AGG 0.523903 7_4:-57581428 None:intergenic
TTCAGATTTGTAAATCTCAT+GGG 0.524035 7_4:+57585284 Msa1165630:intron
TCTGCTTGCAGCTTGATGAT+CGG 0.525516 7_4:-57585399 None:intergenic
AGGAGGTCGCCAATCCTGTA+AGG 0.525729 7_4:-57584714 None:intergenic
TATAACTAGTTGATACGATA+GGG 0.528891 7_4:-57585681 None:intergenic
AAATGACCATCACTTGATGC+TGG 0.529879 7_4:-57584746 None:intergenic
GGAAGAGCTTGATAGGGAGA+TGG 0.530026 7_4:+57582487 Msa1165630:CDS
CTACATTTGTAGTCAAACTT+GGG 0.530312 7_4:+57585354 Msa1165630:CDS
GTGGTATACGCATAGCTCTC+GGG 0.531017 7_4:-57582769 None:intergenic
TGTTCTTAAGGAACAACTCA+CGG 0.533686 7_4:-57582460 None:intergenic
CTGAACTGACTCCAGAGCAG+AGG 0.535510 7_4:+57584265 Msa1165630:CDS
AAAACCAGTTGAACCAATTG+TGG 0.536954 7_4:-57585886 None:intergenic
GATGGGACTTATTCTTACTC+AGG 0.538781 7_4:+57582505 Msa1165630:CDS
CATGTGGGTGTGTTAGATGA+TGG 0.539856 7_4:+57582091 Msa1165630:exon
ATGGGTTCTTATGCAGTTTG+GGG 0.539955 7_4:+57582265 Msa1165630:CDS
TTAACTTATCATGTACAAGT+TGG 0.540061 7_4:+57582698 Msa1165630:CDS
ATCTTTATATCAATGTCGAC+TGG 0.540215 7_4:+57585546 Msa1165630:three_prime_UTR
GATCTGTCCCGACTGGAAGA+TGG 0.542916 7_4:+57584351 Msa1165630:CDS
TTACTCAATGATGACGACAT+AGG 0.543430 7_4:+57585467 Msa1165630:CDS
AGGGGCAAGAATTAAAGTAA+TGG 0.544261 7_4:-57584561 None:intergenic
ACTCTGAGACTGAGTAAACT+TGG 0.544636 7_4:-57585078 None:intergenic
TCATTTCTATATACGAGTCC+AGG 0.548157 7_4:+57584763 Msa1165630:CDS
GAAGAGCTTGATAGGGAGAT+GGG 0.548570 7_4:+57582488 Msa1165630:CDS
CAATGCTGTCAAATATACTA+AGG 0.548729 7_4:+57584649 Msa1165630:CDS
CATGGGTGGGCACATATGGA+TGG 0.549664 7_4:+57585301 Msa1165630:CDS
GCGAGCCCGGGATCAACTCA+TGG 0.550447 7_4:+57584101 Msa1165630:CDS
GTATAACTAGTTGATACGAT+AGG 0.554353 7_4:-57585682 None:intergenic
AAGGCTACCATCTTCCAGTC+GGG 0.554665 7_4:-57584358 None:intergenic
AGAGTGTTATGTTTGTGTTG+TGG 0.554800 7_4:-57581338 None:intergenic
CAAAATAGCAGCATGTGAAA+GGG 0.558668 7_4:-57584067 None:intergenic
CACTTTCTAGCACTATCAGT+AGG 0.560837 7_4:-57582950 None:intergenic
CTTGATGCTGGATAAAACTC+AGG 0.561674 7_4:-57584734 None:intergenic
CAGGTTAAGGATTCTGGATG+TGG 0.561926 7_4:+57585023 Msa1165630:intron
GAGTCGGTTAGTTCATCAGT+TGG 0.566578 7_4:+57585812 Msa1165630:three_prime_UTR
CTTGCAGCTTGATGATCGGA+TGG 0.567335 7_4:-57585395 None:intergenic
CTAACCGACTCCCAAATCAA+TGG 0.568057 7_4:-57585800 None:intergenic
CAAGGCGGAAGAGCTTGATA+GGG 0.569408 7_4:+57582481 Msa1165630:CDS
CATCGACAAGCTCCAACTCA+TGG 0.570916 7_4:-57582979 None:intergenic
ATCTAACACACCCACATGAA+AGG 0.572240 7_4:-57582086 None:intergenic
TGGCATGAGTAGGTAGATCA+GGG 0.573826 7_4:-57584580 None:intergenic
AGATTTGTAAATCTCATGGG+TGG 0.574861 7_4:+57585287 Msa1165630:intron
ACGTTGCCTTAGATTTAGCT+CGG 0.574999 7_4:+57584130 Msa1165630:CDS
TGCTGTCAAATATACTAAGG+AGG 0.577420 7_4:+57584652 Msa1165630:CDS
GCTGTCAAATATACTAAGGA+GGG 0.577474 7_4:+57584653 Msa1165630:CDS
TATTCTAAAGACCACTCTTG+TGG 0.580698 7_4:+57582592 Msa1165630:CDS
GTAAACTTGGTAAAGAGATG+TGG 0.583173 7_4:-57585065 None:intergenic
TGTTATGTTTGTGTTGTGGT+GGG 0.584084 7_4:-57581334 None:intergenic
CTACTGATAGTGCTAGAAAG+TGG 0.585604 7_4:+57582951 Msa1165630:CDS
GCTAGGATAAGACCTCTTGT+CGG 0.586111 7_4:+57582806 Msa1165630:CDS
TGTTCTAGATCTGTCCCGAC+TGG 0.586169 7_4:+57584344 Msa1165630:CDS
CACACACTTGTCCACTTGCT+AGG 0.588144 7_4:+57582789 Msa1165630:CDS
TTTCATGATTCATGACTGCA+AGG 0.589191 7_4:-57584191 None:intergenic
CCACTCTTGTGGAGTTGGGT+AGG 0.594476 7_4:+57582603 Msa1165630:CDS
GATTTGTAAATCTCATGGGT+GGG 0.596709 7_4:+57585288 Msa1165630:intron
ACTTTCTAGCACTATCAGTA+GGG 0.597780 7_4:-57582949 None:intergenic
AGACTTCATTGACAATAGGA+AGG 0.597850 7_4:-57582739 None:intergenic
GTAAGTGCTTAAATCTAGCA+AGG 0.598885 7_4:-57585448 None:intergenic
CAAGGCTACCATCTTCCAGT+CGG 0.599285 7_4:-57584359 None:intergenic
TGAACTGACTCCAGAGCAGA+GGG 0.605152 7_4:+57584266 Msa1165630:CDS
TGAGTTGTTCCTTAAGAACA+AGG 0.610418 7_4:+57582463 Msa1165630:CDS
GCACATATGGATGGAGAGCG+AGG 0.610844 7_4:+57585310 Msa1165630:CDS
GGCACATATCTTCCGACAAG+AGG 0.613814 7_4:-57582818 None:intergenic
AAGAGATGTGGAATATCTTG+TGG 0.615014 7_4:-57585053 None:intergenic
GTGGTTCAACCAGTTTAACT+CGG 0.615420 7_4:-57585867 None:intergenic
AGAGGTCTTATCCTAGCAAG+TGG 0.615685 7_4:-57582800 None:intergenic
TCATCACCGATGGCATGAGT+AGG 0.616501 7_4:-57584590 None:intergenic
CTTAGATTTAGCTCGGCGAG+AGG 0.619358 7_4:+57584137 Msa1165630:CDS
AGCACACGACACTTTAGCGA+TGG 0.621416 7_4:-57582372 None:intergenic
AAAGTGGCGAGACCATGAGT+TGG 0.625466 7_4:+57582967 Msa1165630:CDS
AAATTTGACAAATGTAGAAG+CGG 0.631499 7_4:-57582866 None:intergenic
GATCATCAAGCTGCAAGCAG+AGG 0.631663 7_4:+57585401 Msa1165630:CDS
CAAGCATATAGTGGAAGTGG+AGG 0.635632 7_4:+57585425 Msa1165630:CDS
ATGCCATCGGTGATGAAAAG+CGG 0.635694 7_4:+57584597 Msa1165630:CDS
AAGGGAGGTAGATCAGGCGG+CGG 0.636261 7_4:-57581448 None:intergenic
TGTGCCACCTGAAGTTGTTG+CGG 0.636371 7_4:+57582835 Msa1165630:CDS
ATGAACAAGCATAAGTGCAG+TGG 0.643228 7_4:-57582408 None:intergenic
CCTACCCAACTCCACAAGAG+TGG 0.646184 7_4:-57582603 None:intergenic
GATCTACCTACTCATGCCAT+CGG 0.647848 7_4:+57584584 Msa1165630:CDS
CCTCTCCCAAAACACCATGA+AGG 0.651300 7_4:-57584404 None:intergenic
CACATATGGATGGAGAGCGA+GGG 0.654671 7_4:+57585311 Msa1165630:CDS
GGACCTGTTCGATCTAGCAG+TGG 0.657911 7_4:+57585101 Msa1165630:CDS
CGAACCGCAACAACTTCAGG+TGG 0.664993 7_4:-57582839 None:intergenic
CTGTGGATGCCATCAAGAAG+TGG 0.665478 7_4:+57582650 Msa1165630:CDS
AGTGCGCCAAATAGATTAGG+CGG 0.682072 7_4:-57581425 None:intergenic
TTGACAAGAAGTTCATCTGG+AGG 0.684589 7_4:-57582143 None:intergenic
GATGCTGGATAAAACTCAGG+AGG 0.685050 7_4:-57584731 None:intergenic
CTAGCAAGTGGACAAGTGTG+TGG 0.685475 7_4:-57582788 None:intergenic
AATGCTATAATTGCATGCAT+CGG 0.690508 7_4:-57584222 None:intergenic
GGCATGAGTAGGTAGATCAG+GGG 0.696928 7_4:-57584579 None:intergenic
ATGAAACTACAATATAATCG+GGG 0.698950 7_4:-57585840 None:intergenic
AAGTTTACTCAGTCTCAGAG+TGG 0.708425 7_4:+57585080 Msa1165630:CDS
GTTGTTCCTTAAGAACAAGG+CGG 0.762407 7_4:+57582466 Msa1165630:CDS
GATTGGAGGAATGTGCACTG+TGG 0.783064 7_4:+57582633 Msa1165630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTCTTTTATTTTAT+TGG + chr7_4:57583021-57583040 Msa1165630:intron 10.0%
!! AGTATATTAAATAGTAGTAT+TGG - chr7_4:57581667-57581686 None:intergenic 15.0%
!! ATTGATTGATATTCATATGA+AGG - chr7_4:57581392-57581411 None:intergenic 20.0%
!! AAAAATATATATAGAGAGAG+TGG - chr7_4:57581488-57581507 None:intergenic 20.0%
!!! TAAATAGTAGTATTGGATAA+TGG - chr7_4:57581660-57581679 None:intergenic 20.0%
!! CAAATTTCCAAATTAATGAT+TGG + chr7_4:57582882-57582901 Msa1165630:CDS 20.0%
!! TACGGAATAAAAAATATTCA+GGG - chr7_4:57583060-57583079 None:intergenic 20.0%
!! ATACGGAATAAAAAATATTC+AGG - chr7_4:57583061-57583080 None:intergenic 20.0%
!! AATAGTTGAAAATTAGGAAA+TGG + chr7_4:57583205-57583224 Msa1165630:intron 20.0%
!! GTATTAAATACAAATATCAC+AGG - chr7_4:57583413-57583432 None:intergenic 20.0%
!!! AAAGTTTCAGGTATTTAATT+TGG - chr7_4:57583796-57583815 None:intergenic 20.0%
!!! AAACTTTTCATTCAATTGTA+TGG + chr7_4:57583809-57583828 Msa1165630:intron 20.0%
!! AATTTCAAACACAGTTAATA+TGG - chr7_4:57583871-57583890 None:intergenic 20.0%
!! AATTCAATCACATTAACATA+TGG - chr7_4:57584825-57584844 None:intergenic 20.0%
!! TTAATATGCATTTCACATAA+GGG - chr7_4:57585207-57585226 None:intergenic 20.0%
!!! GATATAAAGATATGCAATTT+TGG - chr7_4:57585537-57585556 None:intergenic 20.0%
!! ATTCATTGCTTAATATAACT+TGG + chr7_4:57585726-57585745 Msa1165630:three_prime_UTR 20.0%
!!! TTAGGCTATGTTTTTAAAAT+CGG + chr7_4:57585758-57585777 Msa1165630:three_prime_UTR 20.0%
!! AATGAAACTACAATATAATC+GGG - chr7_4:57585844-57585863 None:intergenic 20.0%
!! CAATGAAACTACAATATAAT+CGG - chr7_4:57585845-57585864 None:intergenic 20.0%
! ATAGAAGACTTCAAGTATAA+AGG - chr7_4:57581310-57581329 None:intergenic 25.0%
! GAAATGAAGAAGAAGAAAAA+GGG - chr7_4:57581370-57581389 None:intergenic 25.0%
!!! AGCTACTGTTTTTTCTTTTT+TGG + chr7_4:57581842-57581861 Msa1165630:intron 25.0%
!! CAACTCATTTTATAAATCTG+TGG + chr7_4:57582309-57582328 Msa1165630:CDS 25.0%
! TTAACTTATCATGTACAAGT+TGG + chr7_4:57582698-57582717 Msa1165630:CDS 25.0%
! AAATTTGACAAATGTAGAAG+CGG - chr7_4:57582869-57582888 None:intergenic 25.0%
! AATAGAAAACAACGGAAATA+CGG - chr7_4:57583078-57583097 None:intergenic 25.0%
! AGAAAAGGAATAGAAAACAA+CGG - chr7_4:57583086-57583105 None:intergenic 25.0%
! GTTTAAGCAATCAAAAGAAA+AGG - chr7_4:57583101-57583120 None:intergenic 25.0%
! GCATAGAATAGTTGAAAATT+AGG + chr7_4:57583199-57583218 Msa1165630:intron 25.0%
! AAATAACTATAAAGCCCAAA+TGG - chr7_4:57583245-57583264 None:intergenic 25.0%
! CTTAAGTAAAGAACCATATT+AGG + chr7_4:57583306-57583325 Msa1165630:intron 25.0%
! ACTAAATTTAAGAACGAGAT+TGG + chr7_4:57583599-57583618 Msa1165630:intron 25.0%
! AAATTTACAACAAATGTGTG+TGG + chr7_4:57583711-57583730 Msa1165630:intron 25.0%
! AATTTACAACAAATGTGTGT+GGG + chr7_4:57583712-57583731 Msa1165630:intron 25.0%
! GAATAAAACACTTAAAAGTC+AGG - chr7_4:57583739-57583758 None:intergenic 25.0%
!!! GGTATTTAATTTGGTCTTTT+CGG - chr7_4:57583787-57583806 None:intergenic 25.0%
! ACAATTGAATGAAAAGTTTC+AGG - chr7_4:57583808-57583827 None:intergenic 25.0%
!! ATTGAAGAGTAGTAATGTTT+TGG + chr7_4:57584305-57584324 Msa1165630:CDS 25.0%
!!! TTTTTGCCATTTCTAATTCA+AGG - chr7_4:57584380-57584399 None:intergenic 25.0%
! TGTTAATGTGATTGAATTCT+TGG + chr7_4:57584827-57584846 Msa1165630:intron 25.0%
! GTTAATGTGATTGAATTCTT+GGG + chr7_4:57584828-57584847 Msa1165630:intron 25.0%
! AAGTCGATAACATAATGAAA+AGG - chr7_4:57584925-57584944 None:intergenic 25.0%
! CAACTGTTAGAAATTAATCT+AGG + chr7_4:57584955-57584974 Msa1165630:intron 25.0%
! ATTTCACATAAGGGTAATAA+TGG - chr7_4:57585198-57585217 None:intergenic 25.0%
! GTTAATATGCATTTCACATA+AGG - chr7_4:57585208-57585227 None:intergenic 25.0%
! ATTCAGATTTGTAAATCTCA+TGG + chr7_4:57585283-57585302 Msa1165630:intron 25.0%
! TTCAGATTTGTAAATCTCAT+GGG + chr7_4:57585284-57585303 Msa1165630:intron 25.0%
!! TATAACTAGTTGATACGATA+GGG - chr7_4:57585684-57585703 None:intergenic 25.0%
! ATGAAACTACAATATAATCG+GGG - chr7_4:57585843-57585862 None:intergenic 25.0%
GGAAATGAAGAAGAAGAAAA+AGG - chr7_4:57581371-57581390 None:intergenic 30.0%
CTAACATGAGCATTATTGAA+TGG - chr7_4:57581527-57581546 None:intergenic 30.0%
ACATAAATAAACCCAATCTG+AGG - chr7_4:57581886-57581905 None:intergenic 30.0%
! TTCTGTTTTCTTGTTCTTGT+TGG + chr7_4:57581929-57581948 Msa1165630:intron 30.0%
! TTTTACAGATCCTTTCATGT+GGG + chr7_4:57582076-57582095 Msa1165630:intron 30.0%
ACAAAATAAATGAGTTCGAC+AGG - chr7_4:57582218-57582237 None:intergenic 30.0%
TGCTTTCTTTCCATATAGAT+GGG + chr7_4:57582247-57582266 Msa1165630:CDS 30.0%
!! GAATGTTGACTCATGAAATT+AGG + chr7_4:57582549-57582568 Msa1165630:CDS 30.0%
GGCAAAAAGTTATGCAATTA+TGG + chr7_4:57582916-57582935 Msa1165630:CDS 30.0%
!! TAGTTATTTCTCAACCATCA+AGG + chr7_4:57583256-57583275 Msa1165630:intron 30.0%
GAAAAGAAAACGACATAAGA+TGG - chr7_4:57583484-57583503 None:intergenic 30.0%
! AAATCAAAATTAGACTGGCT+CGG - chr7_4:57583521-57583540 None:intergenic 30.0%
!!! AGCCAGTCTAATTTTGATTT+TGG + chr7_4:57583521-57583540 Msa1165630:intron 30.0%
! TTTTGGCCATTGAAGATATA+TGG + chr7_4:57583538-57583557 Msa1165630:intron 30.0%
TAAGAACGAGATTGGAAAAA+TGG + chr7_4:57583607-57583626 Msa1165630:intron 30.0%
AAGAACGAGATTGGAAAAAT+GGG + chr7_4:57583608-57583627 Msa1165630:intron 30.0%
!! TAATTTGGTCTTTTCGGATT+AGG - chr7_4:57583781-57583800 None:intergenic 30.0%
! CATTCAATTGTATGGCTTTT+AGG + chr7_4:57583817-57583836 Msa1165630:intron 30.0%
ATATCAGCACTAGAAAATGT+TGG - chr7_4:57583917-57583936 None:intergenic 30.0%
!!! AACATTTTCTAGTGCTGATA+TGG + chr7_4:57583916-57583935 Msa1165630:intron 30.0%
! AACTAAATGGATTCAGCATA+CGG - chr7_4:57584028-57584047 None:intergenic 30.0%
! AATCCATTTAGTTTCCATAC+AGG + chr7_4:57584035-57584054 Msa1165630:intron 30.0%
AATGCTATAATTGCATGCAT+CGG - chr7_4:57584225-57584244 None:intergenic 30.0%
CAATACATAAATGCTGTTCA+TGG - chr7_4:57584478-57584497 None:intergenic 30.0%
! TGCTTTTCTATTGTTAATGC+AGG + chr7_4:57584496-57584515 Msa1165630:intron 30.0%
!!! AGTTTTTTCACAGATGCTAT+AGG - chr7_4:57584539-57584558 None:intergenic 30.0%
CAATGCTGTCAAATATACTA+AGG + chr7_4:57584649-57584668 Msa1165630:CDS 30.0%
GAAAAGGTAGAGATATCTTT+GGG - chr7_4:57584909-57584928 None:intergenic 30.0%
TGAAAAGGTAGAGATATCTT+TGG - chr7_4:57584910-57584929 None:intergenic 30.0%
!! TTGGACTAGCTATTTGTAAA+AGG + chr7_4:57585132-57585151 Msa1165630:CDS 30.0%
ACTAGCTATTTGTAAAAGGT+AGG + chr7_4:57585136-57585155 Msa1165630:intron 30.0%
CTAGCTATTTGTAAAAGGTA+GGG + chr7_4:57585137-57585156 Msa1165630:intron 30.0%
CTACATTTGTAGTCAAACTT+GGG + chr7_4:57585354-57585373 Msa1165630:CDS 30.0%
!!! AGATATGCAATTTTGGTGTT+TGG - chr7_4:57585530-57585549 None:intergenic 30.0%
ATCTTTATATCAATGTCGAC+TGG + chr7_4:57585546-57585565 Msa1165630:three_prime_UTR 30.0%
! GTATAACTAGTTGATACGAT+AGG - chr7_4:57585685-57585704 None:intergenic 30.0%
! ATAACTTGGAGCAGTATTTT+AGG + chr7_4:57585740-57585759 Msa1165630:three_prime_UTR 30.0%
AAATCAATGGTTGAACTAAC+GGG - chr7_4:57585790-57585809 None:intergenic 30.0%
CAAATCAATGGTTGAACTAA+CGG - chr7_4:57585791-57585810 None:intergenic 30.0%
!! GTTAGTTCAACCATTGATTT+GGG + chr7_4:57585790-57585809 Msa1165630:three_prime_UTR 30.0%
TGTTATGTTTGTGTTGTGGT+GGG - chr7_4:57581337-57581356 None:intergenic 35.0%
! AGAGTGTTATGTTTGTGTTG+TGG - chr7_4:57581341-57581360 None:intergenic 35.0%
CGTAAGATTCGAGTAATTGT+TGG + chr7_4:57581733-57581752 Msa1165630:intron 35.0%
! ATATTTAGATTCGTGCTGCT+GGG + chr7_4:57581770-57581789 Msa1165630:intron 35.0%
TCAAACTCAATACCTCAGAT+TGG + chr7_4:57581871-57581890 Msa1165630:intron 35.0%
CAAACTCAATACCTCAGATT+GGG + chr7_4:57581872-57581891 Msa1165630:intron 35.0%
!!! GTTCTTGTTGGTTTTGAACT+TGG + chr7_4:57581941-57581960 Msa1165630:intron 35.0%
ACGGGTTCAAAAACAAAAAG+TGG - chr7_4:57582033-57582052 None:intergenic 35.0%
! CTTTTACAGATCCTTTCATG+TGG + chr7_4:57582075-57582094 Msa1165630:intron 35.0%
TACTTGACAAGAAGTTCATC+TGG - chr7_4:57582149-57582168 None:intergenic 35.0%
CTGCTTTCTTTCCATATAGA+TGG + chr7_4:57582246-57582265 Msa1165630:CDS 35.0%
TGCATAAGAACCCATCTATA+TGG - chr7_4:57582260-57582279 None:intergenic 35.0%
!! GTTTTAACACTCAACAGATC+GGG - chr7_4:57582440-57582459 None:intergenic 35.0%
!! GGTTTTAACACTCAACAGAT+CGG - chr7_4:57582441-57582460 None:intergenic 35.0%
TGTTCTTAAGGAACAACTCA+CGG - chr7_4:57582463-57582482 None:intergenic 35.0%
TGAGTTGTTCCTTAAGAACA+AGG + chr7_4:57582463-57582482 Msa1165630:CDS 35.0%
ATTCTTACTCAGGAAGAAAC+CGG + chr7_4:57582515-57582534 Msa1165630:CDS 35.0%
!! AAATTAGGAGCACTCTTGAT+AGG + chr7_4:57582564-57582583 Msa1165630:CDS 35.0%
! TATTCTAAAGACCACTCTTG+TGG + chr7_4:57582592-57582611 Msa1165630:CDS 35.0%
AGATTCAAACCACTTCTTGA+TGG - chr7_4:57582662-57582681 None:intergenic 35.0%
TTGACAATAGGAAGGTTTGT+TGG - chr7_4:57582734-57582753 None:intergenic 35.0%
AGACTTCATTGACAATAGGA+AGG - chr7_4:57582742-57582761 None:intergenic 35.0%
CTGAAGACTTCATTGACAAT+AGG - chr7_4:57582746-57582765 None:intergenic 35.0%
! ACTTTCTAGCACTATCAGTA+GGG - chr7_4:57582952-57582971 None:intergenic 35.0%
!! CTATTGCTGTGAACTTGTTT+TGG + chr7_4:57583168-57583187 Msa1165630:intron 35.0%
!!! TGTGAACTTGTTTTGGAGTT+TGG + chr7_4:57583175-57583194 Msa1165630:intron 35.0%
AGGAAATGGCTATCAATCAT+TGG + chr7_4:57583219-57583238 Msa1165630:intron 35.0%
CTATCAATCATTGGCCATTT+GGG + chr7_4:57583228-57583247 Msa1165630:intron 35.0%
TATTCTGTCTTCTACCTTGA+TGG - chr7_4:57583273-57583292 None:intergenic 35.0%
GGTTCTTTACTTAAGTCACT+AGG - chr7_4:57583301-57583320 None:intergenic 35.0%
AACCATATTAGGTATGCATG+TGG + chr7_4:57583317-57583336 Msa1165630:intron 35.0%
TCCCAATAAGTGGCTAAAAA+AGG + chr7_4:57583362-57583381 Msa1165630:intron 35.0%
!!! CCCTTTTTTAGCCACTTATT+GGG - chr7_4:57583366-57583385 None:intergenic 35.0%
CCCAATAAGTGGCTAAAAAA+GGG + chr7_4:57583363-57583382 Msa1165630:intron 35.0%
!!! TCCCTTTTTTAGCCACTTAT+TGG - chr7_4:57583367-57583386 None:intergenic 35.0%
AATAAGTGGCTAAAAAAGGG+AGG + chr7_4:57583366-57583385 Msa1165630:intron 35.0%
ATAAGTGGCTAAAAAAGGGA+GGG + chr7_4:57583367-57583386 Msa1165630:intron 35.0%
ATGTGTAAACTATATCGCAG+AGG - chr7_4:57583456-57583475 None:intergenic 35.0%
TCTGCGATATAGTTTACACA+TGG + chr7_4:57583455-57583474 Msa1165630:intron 35.0%
GGCCAAAATCAAAATTAGAC+TGG - chr7_4:57583526-57583545 None:intergenic 35.0%
CTCAATATCAAGACTGAGAT+AGG + chr7_4:57583564-57583583 Msa1165630:intron 35.0%
AGAACGAGATTGGAAAAATG+GGG + chr7_4:57583609-57583628 Msa1165630:intron 35.0%
!! ATGTTGGCGACATTTTGAAA+CGG - chr7_4:57583901-57583920 None:intergenic 35.0%
CTACCTGTATGGAAACTAAA+TGG - chr7_4:57584041-57584060 None:intergenic 35.0%
CAAAATAGCAGCATGTGAAA+GGG - chr7_4:57584070-57584089 None:intergenic 35.0%
TTTCATGATTCATGACTGCA+AGG - chr7_4:57584194-57584213 None:intergenic 35.0%
! AGCATTGTCATCACTTCTTT+TGG + chr7_4:57584239-57584258 Msa1165630:CDS 35.0%
! TGGTAGCCTTGAATTAGAAA+TGG + chr7_4:57584371-57584390 Msa1165630:CDS 35.0%
ATGGCAAAAATCAACCTTCA+TGG + chr7_4:57584390-57584409 Msa1165630:CDS 35.0%
! AATCAACCTTCATGGTGTTT+TGG + chr7_4:57584398-57584417 Msa1165630:CDS 35.0%
! ATCAACCTTCATGGTGTTTT+GGG + chr7_4:57584399-57584418 Msa1165630:CDS 35.0%
GGGGCAAGAATTAAAGTAAT+GGG - chr7_4:57584563-57584582 None:intergenic 35.0%
AGGGGCAAGAATTAAAGTAA+TGG - chr7_4:57584564-57584583 None:intergenic 35.0%
! CAGACACTTTTGAATGTTGT+GGG + chr7_4:57584626-57584645 Msa1165630:CDS 35.0%
TGCTGTCAAATATACTAAGG+AGG + chr7_4:57584652-57584671 Msa1165630:CDS 35.0%
GCTGTCAAATATACTAAGGA+GGG + chr7_4:57584653-57584672 Msa1165630:CDS 35.0%
! TTTTATCCAGCATCAAGTGA+TGG + chr7_4:57584740-57584759 Msa1165630:CDS 35.0%
TCATTTCTATATACGAGTCC+AGG + chr7_4:57584763-57584782 Msa1165630:CDS 35.0%
TCATCCATACCTACATTTCT+AGG + chr7_4:57584877-57584896 Msa1165630:intron 35.0%
CTTTCCTAGAAATGTAGGTA+TGG - chr7_4:57584884-57584903 None:intergenic 35.0%
AAGAGATGTGGAATATCTTG+TGG - chr7_4:57585056-57585075 None:intergenic 35.0%
GTAAACTTGGTAAAGAGATG+TGG - chr7_4:57585068-57585087 None:intergenic 35.0%
AGATTTGTAAATCTCATGGG+TGG + chr7_4:57585287-57585306 Msa1165630:intron 35.0%
GATTTGTAAATCTCATGGGT+GGG + chr7_4:57585288-57585307 Msa1165630:intron 35.0%
GCTACATTTGTAGTCAAACT+TGG + chr7_4:57585353-57585372 Msa1165630:CDS 35.0%
GTAAGTGCTTAAATCTAGCA+AGG - chr7_4:57585451-57585470 None:intergenic 35.0%
! TTACTCAATGATGACGACAT+AGG + chr7_4:57585467-57585486 Msa1165630:CDS 35.0%
! CGTTAGTTCAACCATTGATT+TGG + chr7_4:57585789-57585808 Msa1165630:three_prime_UTR 35.0%
TTCATTGAACCGAGTTAAAC+TGG + chr7_4:57585858-57585877 Msa1165630:three_prime_UTR 35.0%
TAAACTGGTTGAACCACAAT+TGG + chr7_4:57585873-57585892 Msa1165630:three_prime_UTR 35.0%
AAAACCAGTTGAACCAATTG+TGG - chr7_4:57585889-57585908 None:intergenic 35.0%
GTGTTATGTTTGTGTTGTGG+TGG - chr7_4:57581338-57581357 None:intergenic 40.0%
AAGTCTCCGCCTAATCTATT+TGG + chr7_4:57581419-57581438 Msa1165630:five_prime_UTR 40.0%
! GTGGATTGATACCGGAAAAA+GGG - chr7_4:57581469-57581488 None:intergenic 40.0%
!! AGTGGATTGATACCGGAAAA+AGG - chr7_4:57581470-57581489 None:intergenic 40.0%
!! TAGAGAGAGTGGATTGATAC+CGG - chr7_4:57581477-57581496 None:intergenic 40.0%
CATATTTAGATTCGTGCTGC+TGG + chr7_4:57581769-57581788 Msa1165630:intron 40.0%
ATAGCATAGGTTGTCATCAC+GGG - chr7_4:57582051-57582070 None:intergenic 40.0%
CATAGCATAGGTTGTCATCA+CGG - chr7_4:57582052-57582071 None:intergenic 40.0%
!! CTGTAAAAGCACCATAGCAT+AGG - chr7_4:57582064-57582083 None:intergenic 40.0%
ATCTAACACACCCACATGAA+AGG - chr7_4:57582089-57582108 None:intergenic 40.0%
AGAAGTTCATCTGGAGGATA+AGG - chr7_4:57582140-57582159 None:intergenic 40.0%
TTGACAAGAAGTTCATCTGG+AGG - chr7_4:57582146-57582165 None:intergenic 40.0%
! AGATGGGTTCTTATGCAGTT+TGG + chr7_4:57582263-57582282 Msa1165630:CDS 40.0%
! GATGGGTTCTTATGCAGTTT+GGG + chr7_4:57582264-57582283 Msa1165630:CDS 40.0%
ATGGGTTCTTATGCAGTTTG+GGG + chr7_4:57582265-57582284 Msa1165630:CDS 40.0%
! GGGGCTTTTATTGTTCTATG+TGG + chr7_4:57582284-57582303 Msa1165630:CDS 40.0%
ATGAACAAGCATAAGTGCAG+TGG - chr7_4:57582411-57582430 None:intergenic 40.0%
GTTCTTAAGGAACAACTCAC+GGG - chr7_4:57582462-57582481 None:intergenic 40.0%
GTTGTTCCTTAAGAACAAGG+CGG + chr7_4:57582466-57582485 Msa1165630:CDS 40.0%
GATGGGACTTATTCTTACTC+AGG + chr7_4:57582505-57582524 Msa1165630:CDS 40.0%
CAACATTCTCACATGTCTTC+CGG - chr7_4:57582537-57582556 None:intergenic 40.0%
GCTCAGGCCAATCATTAATT+TGG - chr7_4:57582892-57582911 None:intergenic 40.0%
!! TAATGATTGGCCTGAGCTTT+CGG + chr7_4:57582895-57582914 Msa1165630:CDS 40.0%
! TAACTTTTTGCCGAAAGCTC+AGG - chr7_4:57582908-57582927 None:intergenic 40.0%
! CACTTTCTAGCACTATCAGT+AGG - chr7_4:57582953-57582972 None:intergenic 40.0%
! CTACTGATAGTGCTAGAAAG+TGG + chr7_4:57582951-57582970 Msa1165630:CDS 40.0%
AGACTCAGAACAGAACTTAC+AGG - chr7_4:57583146-57583165 None:intergenic 40.0%
GCTATCAATCATTGGCCATT+TGG + chr7_4:57583227-57583246 Msa1165630:intron 40.0%
CTCCACATGCATACCTAATA+TGG - chr7_4:57583322-57583341 None:intergenic 40.0%
TGGCCATTGAAGATATATGG+TGG + chr7_4:57583541-57583560 Msa1165630:intron 40.0%
GAGCCACCATATATCTTCAA+TGG - chr7_4:57583547-57583566 None:intergenic 40.0%
TATCAAGACTGAGATAGGCT+CGG + chr7_4:57583569-57583588 Msa1165630:intron 40.0%
AATCTGATGCAGATCTGTCT+AGG + chr7_4:57583686-57583705 Msa1165630:intron 40.0%
!! TTTGGTCTTTTCGGATTAGG+AGG - chr7_4:57583778-57583797 None:intergenic 40.0%
! TAAATGGATTCAGCATACGG+AGG - chr7_4:57584025-57584044 None:intergenic 40.0%
CCAAAATAGCAGCATGTGAA+AGG - chr7_4:57584071-57584090 None:intergenic 40.0%
!! CCTTTCACATGCTGCTATTT+TGG + chr7_4:57584068-57584087 Msa1165630:CDS 40.0%
!!! TTCACATGCTGCTATTTTGG+AGG + chr7_4:57584071-57584090 Msa1165630:CDS 40.0%
!! TTTGTTCCATGAGTTGATCC+CGG - chr7_4:57584110-57584129 None:intergenic 40.0%
ACGTTGCCTTAGATTTAGCT+CGG + chr7_4:57584130-57584149 Msa1165630:CDS 40.0%
! GCAGACACTTTTGAATGTTG+TGG + chr7_4:57584625-57584644 Msa1165630:CDS 40.0%
TGCAAAACCAGAATCCTTAC+AGG + chr7_4:57584700-57584719 Msa1165630:CDS 40.0%
AACCAGAATCCTTACAGGAT+TGG + chr7_4:57584705-57584724 Msa1165630:CDS 40.0%
CTTGATGCTGGATAAAACTC+AGG - chr7_4:57584737-57584756 None:intergenic 40.0%
AAATGACCATCACTTGATGC+TGG - chr7_4:57584749-57584768 None:intergenic 40.0%
TGCACAAAGAAGGATGTTTG+GGG - chr7_4:57585005-57585024 None:intergenic 40.0%
CTGCACAAAGAAGGATGTTT+GGG - chr7_4:57585006-57585025 None:intergenic 40.0%
ATCCTTCTTTGTGCAGGTTA+AGG + chr7_4:57585010-57585029 Msa1165630:intron 40.0%
ATCCTTAACCTGCACAAAGA+AGG - chr7_4:57585015-57585034 None:intergenic 40.0%
TTTGTGCAGGTTAAGGATTC+TGG + chr7_4:57585017-57585036 Msa1165630:intron 40.0%
!! ACTCTGAGACTGAGTAAACT+TGG - chr7_4:57585081-57585100 None:intergenic 40.0%
AAGTTTACTCAGTCTCAGAG+TGG + chr7_4:57585080-57585099 Msa1165630:CDS 40.0%
!! GGTAATAATGGTGACTTGCT+AGG - chr7_4:57585186-57585205 None:intergenic 40.0%
GTAGTCAAACTTGGGATTTG+TGG + chr7_4:57585362-57585381 Msa1165630:CDS 40.0%
GCTGTTTGCAGCTATAGATT+AGG + chr7_4:57585613-57585632 Msa1165630:three_prime_UTR 40.0%
!! TCAACCATTGATTTGGGAGT+CGG + chr7_4:57585796-57585815 Msa1165630:three_prime_UTR 40.0%
GTGGTTCAACCAGTTTAACT+CGG - chr7_4:57585870-57585889 None:intergenic 40.0%
! TGAACCACAATTGGTTCAAC+TGG + chr7_4:57585882-57585901 Msa1165630:three_prime_UTR 40.0%
AGTGCGCCAAATAGATTAGG+CGG - chr7_4:57581428-57581447 None:intergenic 45.0%
AAAAAGGGAGGTAGATCAGG+CGG - chr7_4:57581454-57581473 None:intergenic 45.0%
! CTGATCTACCTCCCTTTTTC+CGG + chr7_4:57581455-57581474 Msa1165630:five_prime_UTR 45.0%
GATTGATACCGGAAAAAGGG+AGG - chr7_4:57581466-57581485 None:intergenic 45.0%
CGTGATGACAACCTATGCTA+TGG + chr7_4:57582050-57582069 Msa1165630:intron 45.0%
CATGTGGGTGTGTTAGATGA+TGG + chr7_4:57582091-57582110 Msa1165630:exon 45.0%
GAAGAGCTTGATAGGGAGAT+GGG + chr7_4:57582488-57582507 Msa1165630:CDS 45.0%
AAAGACCACTCTTGTGGAGT+TGG + chr7_4:57582598-57582617 Msa1165630:CDS 45.0%
AAGACCACTCTTGTGGAGTT+GGG + chr7_4:57582599-57582618 Msa1165630:CDS 45.0%
!! GTTGGGTAGGACTTTAGGAT+TGG + chr7_4:57582616-57582635 Msa1165630:CDS 45.0%
TGTGGTATACGCATAGCTCT+CGG - chr7_4:57582773-57582792 None:intergenic 45.0%
! AGAGGTCTTATCCTAGCAAG+TGG - chr7_4:57582803-57582822 None:intergenic 45.0%
GCTAGGATAAGACCTCTTGT+CGG + chr7_4:57582806-57582825 Msa1165630:CDS 45.0%
TGTCGATGTTGTTGCAGATC+AGG + chr7_4:57582994-57583013 Msa1165630:CDS 45.0%
AGCCACTTATTGGGATTCAG+CGG - chr7_4:57583357-57583376 None:intergenic 45.0%
ATCAAGACTGAGATAGGCTC+GGG + chr7_4:57583570-57583589 Msa1165630:intron 45.0%
!! TTGTTCCATGAGTTGATCCC+GGG - chr7_4:57584109-57584128 None:intergenic 45.0%
TCTATCATAACCCTCTGCTC+TGG - chr7_4:57584279-57584298 None:intergenic 45.0%
TGGCATGAGTAGGTAGATCA+GGG - chr7_4:57584583-57584602 None:intergenic 45.0%
ATGGCATGAGTAGGTAGATC+AGG - chr7_4:57584584-57584603 None:intergenic 45.0%
GATCTACCTACTCATGCCAT+CGG + chr7_4:57584584-57584603 Msa1165630:CDS 45.0%
ATGCCATCGGTGATGAAAAG+CGG + chr7_4:57584597-57584616 Msa1165630:CDS 45.0%
GATGCTGGATAAAACTCAGG+AGG - chr7_4:57584734-57584753 None:intergenic 45.0%
ACGAGTCCAGGTTATGACTT+TGG + chr7_4:57584775-57584794 Msa1165630:intron 45.0%
GAGATGCCAAAGTCATAACC+TGG - chr7_4:57584784-57584803 None:intergenic 45.0%
GGGCTCTTTCCTAGAAATGT+AGG - chr7_4:57584889-57584908 None:intergenic 45.0%
CCTGCACAAAGAAGGATGTT+TGG - chr7_4:57585007-57585026 None:intergenic 45.0%
CCAAACATCCTTCTTTGTGC+AGG + chr7_4:57585004-57585023 Msa1165630:intron 45.0%
CAGGTTAAGGATTCTGGATG+TGG + chr7_4:57585023-57585042 Msa1165630:intron 45.0%
! TCTGCTTGCAGCTTGATGAT+CGG - chr7_4:57585402-57585421 None:intergenic 45.0%
CTCCACTTCCACTATATGCT+TGG - chr7_4:57585427-57585446 None:intergenic 45.0%
! CAAGCATATAGTGGAAGTGG+AGG + chr7_4:57585425-57585444 Msa1165630:CDS 45.0%
! CTAACCGACTCCCAAATCAA+TGG - chr7_4:57585803-57585822 None:intergenic 45.0%
! GAGTCGGTTAGTTCATCAGT+TGG + chr7_4:57585812-57585831 Msa1165630:three_prime_UTR 45.0%
!! TAAAAAAAAAAAAATAGTAT+AGG - chr7_4:57581706-57581725 None:intergenic 5.0%
CGGAGTGCGCCAAATAGATT+AGG - chr7_4:57581431-57581450 None:intergenic 50.0%
CGGAAAAAGGGAGGTAGATC+AGG - chr7_4:57581457-57581476 None:intergenic 50.0%
AGCACACGACACTTTAGCGA+TGG - chr7_4:57582375-57582394 None:intergenic 50.0%
! GCTCTTCCGCCTTGTTCTTA+AGG - chr7_4:57582475-57582494 None:intergenic 50.0%
ACAAGGCGGAAGAGCTTGAT+AGG + chr7_4:57582480-57582499 Msa1165630:CDS 50.0%
CAAGGCGGAAGAGCTTGATA+GGG + chr7_4:57582481-57582500 Msa1165630:CDS 50.0%
GGAAGAGCTTGATAGGGAGA+TGG + chr7_4:57582487-57582506 Msa1165630:CDS 50.0%
GTGGAGTTGGGTAGGACTTT+AGG + chr7_4:57582611-57582630 Msa1165630:CDS 50.0%
!! GGGTAGGACTTTAGGATTGG+AGG + chr7_4:57582619-57582638 Msa1165630:CDS 50.0%
GATTGGAGGAATGTGCACTG+TGG + chr7_4:57582633-57582652 Msa1165630:CDS 50.0%
CTGTGGATGCCATCAAGAAG+TGG + chr7_4:57582650-57582669 Msa1165630:CDS 50.0%
GTGGTATACGCATAGCTCTC+GGG - chr7_4:57582772-57582791 None:intergenic 50.0%
CTAGCAAGTGGACAAGTGTG+TGG - chr7_4:57582791-57582810 None:intergenic 50.0%
CACACACTTGTCCACTTGCT+AGG + chr7_4:57582789-57582808 Msa1165630:CDS 50.0%
GGCACATATCTTCCGACAAG+AGG - chr7_4:57582821-57582840 None:intergenic 50.0%
TGTGCCACCTGAAGTTGTTG+CGG + chr7_4:57582835-57582854 Msa1165630:CDS 50.0%
CACCTGAAGTTGTTGCGGTT+CGG + chr7_4:57582840-57582859 Msa1165630:CDS 50.0%
ACCTGAAGTTGTTGCGGTTC+GGG + chr7_4:57582841-57582860 Msa1165630:CDS 50.0%
AAAGTGGCGAGACCATGAGT+TGG + chr7_4:57582967-57582986 Msa1165630:CDS 50.0%
CATCGACAAGCTCCAACTCA+TGG - chr7_4:57582982-57583001 None:intergenic 50.0%
CTCACATGCACCTCAGATGT+GGG + chr7_4:57583949-57583968 Msa1165630:intron 50.0%
TCACATGCACCTCAGATGTG+GGG + chr7_4:57583950-57583969 Msa1165630:intron 50.0%
CAATCATGTCCCCACATCTG+AGG - chr7_4:57583962-57583981 None:intergenic 50.0%
AAGGGCAACTGCTACCTGTA+TGG - chr7_4:57584052-57584071 None:intergenic 50.0%
CTCTCGCCGAGCTAAATCTA+AGG - chr7_4:57584139-57584158 None:intergenic 50.0%
! CTTAGATTTAGCTCGGCGAG+AGG + chr7_4:57584137-57584156 Msa1165630:CDS 50.0%
! TGAACTGACTCCAGAGCAGA+GGG + chr7_4:57584266-57584285 Msa1165630:CDS 50.0%
! TGTTCTAGATCTGTCCCGAC+TGG + chr7_4:57584344-57584363 Msa1165630:CDS 50.0%
AAGGCTACCATCTTCCAGTC+GGG - chr7_4:57584361-57584380 None:intergenic 50.0%
CAAGGCTACCATCTTCCAGT+CGG - chr7_4:57584362-57584381 None:intergenic 50.0%
CCTCTCCCAAAACACCATGA+AGG - chr7_4:57584407-57584426 None:intergenic 50.0%
!!! CCTTCATGGTGTTTTGGGAG+AGG + chr7_4:57584404-57584423 Msa1165630:CDS 50.0%
GGCATGAGTAGGTAGATCAG+GGG - chr7_4:57584582-57584601 None:intergenic 50.0%
TCATCACCGATGGCATGAGT+AGG - chr7_4:57584593-57584612 None:intergenic 50.0%
!!! AAGCCGCTTTTCATCACCGA+TGG - chr7_4:57584603-57584622 None:intergenic 50.0%
CGCCAATCCTGTAAGGATTC+TGG - chr7_4:57584710-57584729 None:intergenic 50.0%
! GTTTGGGGTCAGTCATGAGA+TGG - chr7_4:57584990-57585009 None:intergenic 50.0%
GAACCACTGCTAGATCGAAC+AGG - chr7_4:57585107-57585126 None:intergenic 50.0%
GTTCGATCTAGCAGTGGTTC+AGG + chr7_4:57585107-57585126 Msa1165630:CDS 50.0%
TCTAGCAGTGGTTCAGGTCT+TGG + chr7_4:57585113-57585132 Msa1165630:CDS 50.0%
ATCTCATGGGTGGGCACATA+TGG + chr7_4:57585297-57585316 Msa1165630:CDS 50.0%
CACATATGGATGGAGAGCGA+GGG + chr7_4:57585311-57585330 Msa1165630:CDS 50.0%
! CTTGCAGCTTGATGATCGGA+TGG - chr7_4:57585398-57585417 None:intergenic 50.0%
GATCATCAAGCTGCAAGCAG+AGG + chr7_4:57585401-57585420 Msa1165630:CDS 50.0%
AGCAGAGGCCAAGCATATAG+TGG + chr7_4:57585416-57585435 Msa1165630:CDS 50.0%
! GGCCAAGCATATAGTGGAAG+TGG + chr7_4:57585422-57585441 Msa1165630:CDS 50.0%
CCTACCCAACTCCACAAGAG+TGG - chr7_4:57582606-57582625 None:intergenic 55.0%
CCACTCTTGTGGAGTTGGGT+AGG + chr7_4:57582603-57582622 Msa1165630:CDS 55.0%
CGAACCGCAACAACTTCAGG+TGG - chr7_4:57582842-57582861 None:intergenic 55.0%
ACCCGAACCGCAACAACTTC+AGG - chr7_4:57582845-57582864 None:intergenic 55.0%
TGCATGTGGAGTATGCGCTG+AGG + chr7_4:57583331-57583350 Msa1165630:intron 55.0%
GGCCGCTGAATCCCAATAAG+TGG + chr7_4:57583352-57583371 Msa1165630:intron 55.0%
GTGGCTAAAAAAGGGAGGGC+AGG + chr7_4:57583371-57583390 Msa1165630:intron 55.0%
! AGGAGGCATGTGCAGGCAAA+GGG - chr7_4:57583761-57583780 None:intergenic 55.0%
! TAGGAGGCATGTGCAGGCAA+AGG - chr7_4:57583762-57583781 None:intergenic 55.0%
! TCGGATTAGGAGGCATGTGC+AGG - chr7_4:57583768-57583787 None:intergenic 55.0%
! CCACATCTGAGGTGCATGTG+AGG - chr7_4:57583951-57583970 None:intergenic 55.0%
CCTCACATGCACCTCAGATG+TGG + chr7_4:57583948-57583967 Msa1165630:intron 55.0%
! CTGAACTGACTCCAGAGCAG+AGG + chr7_4:57584265-57584284 Msa1165630:CDS 55.0%
GATCTGTCCCGACTGGAAGA+TGG + chr7_4:57584351-57584370 Msa1165630:CDS 55.0%
AGGAGGTCGCCAATCCTGTA+AGG - chr7_4:57584717-57584736 None:intergenic 55.0%
GGACCTGTTCGATCTAGCAG+TGG + chr7_4:57585101-57585120 Msa1165630:CDS 55.0%
CATGGGTGGGCACATATGGA+TGG + chr7_4:57585301-57585320 Msa1165630:CDS 55.0%
GCACATATGGATGGAGAGCG+AGG + chr7_4:57585310-57585329 Msa1165630:CDS 55.0%
GAGAGCGAGGGTCACGATAA+AGG + chr7_4:57585323-57585342 Msa1165630:CDS 55.0%
AAGGGAGGTAGATCAGGCGG+CGG - chr7_4:57581451-57581470 None:intergenic 60.0%
AGCTCGGCGAGAGGCTGAAA+TGG + chr7_4:57584146-57584165 Msa1165630:CDS 60.0%
TGGAGGAGTCCATGCGAGCC+CGG + chr7_4:57584088-57584107 Msa1165630:CDS 65.0%
! GAGTTGATCCCGGGCTCGCA+TGG - chr7_4:57584100-57584119 None:intergenic 65.0%
GCGAGCCCGGGATCAACTCA+TGG + chr7_4:57584101-57584120 Msa1165630:CDS 65.0%
GGAGGAGTCCATGCGAGCCC+GGG + chr7_4:57584089-57584108 Msa1165630:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57581292 57585944 57581292 ID=Msa1165630;Name=Msa1165630
chr7_4 mRNA 57581292 57585944 57581292 ID=Msa1165630-mRNA-1;Parent=Msa1165630;Name=Msa1165630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=208|1|1|1|0.8|0.66|6|421|635
chr7_4 exon 57581292 57581476 57581292 ID=Msa1165630-mRNA-1:exon:17397;Parent=Msa1165630-mRNA-1
chr7_4 exon 57582084 57583015 57582084 ID=Msa1165630-mRNA-1:exon:17398;Parent=Msa1165630-mRNA-1
chr7_4 exon 57584057 57584425 57584057 ID=Msa1165630-mRNA-1:exon:17399;Parent=Msa1165630-mRNA-1
chr7_4 exon 57584518 57584784 57584518 ID=Msa1165630-mRNA-1:exon:17400;Parent=Msa1165630-mRNA-1
chr7_4 exon 57585026 57585153 57585026 ID=Msa1165630-mRNA-1:exon:17401;Parent=Msa1165630-mRNA-1
chr7_4 exon 57585289 57585944 57585289 ID=Msa1165630-mRNA-1:exon:17402;Parent=Msa1165630-mRNA-1
chr7_4 five_prime_UTR 57581292 57581476 57581292 ID=Msa1165630-mRNA-1:five_prime_utr;Parent=Msa1165630-mRNA-1
chr7_4 five_prime_UTR 57582084 57582106 57582084 ID=Msa1165630-mRNA-1:five_prime_utr;Parent=Msa1165630-mRNA-1
chr7_4 CDS 57582107 57583015 57582107 ID=Msa1165630-mRNA-1:cds;Parent=Msa1165630-mRNA-1
chr7_4 CDS 57584057 57584425 57584057 ID=Msa1165630-mRNA-1:cds;Parent=Msa1165630-mRNA-1
chr7_4 CDS 57584518 57584784 57584518 ID=Msa1165630-mRNA-1:cds;Parent=Msa1165630-mRNA-1
chr7_4 CDS 57585026 57585153 57585026 ID=Msa1165630-mRNA-1:cds;Parent=Msa1165630-mRNA-1
chr7_4 CDS 57585289 57585523 57585289 ID=Msa1165630-mRNA-1:cds;Parent=Msa1165630-mRNA-1
chr7_4 three_prime_UTR 57585524 57585944 57585524 ID=Msa1165630-mRNA-1:three_prime_utr;Parent=Msa1165630-mRNA-1
Gene Sequence

>Msa1165630

ATGATGGAGTCTTGCGAGTGTATCGACACGCCTTATCCTCCAGATGAACTTCTTGTCAAGTATCAATACATCTCTGACGTTCTAATCGCACTTGCGTATTTCTCAATTCCTGTCGAACTCATTTATTTTGTTCAGAAATCTGCTTTCTTTCCATATAGATGGGTTCTTATGCAGTTTGGGGCTTTTATTGTTCTATGTGGAGCAACTCATTTTATAAATCTGTGGACATTCTCAGCTCACACGAAAGCTGTTGCTGTTGTAATGACCATCGCTAAAGTGTCGTGTGCTATTGTCTCATGTGCCACTGCACTTATGCTTGTTCATATTATTCCCGATCTGTTGAGTGTTAAAACCCGTGAGTTGTTCCTTAAGAACAAGGCGGAAGAGCTTGATAGGGAGATGGGACTTATTCTTACTCAGGAAGAAACCGGAAGACATGTGAGAATGTTGACTCATGAAATTAGGAGCACTCTTGATAGGCATACTATTCTAAAGACCACTCTTGTGGAGTTGGGTAGGACTTTAGGATTGGAGGAATGTGCACTGTGGATGCCATCAAGAAGTGGTTTGAATCTACAACTTTCTCATACTTTAACTTATCATGTACAAGTTGGTTCTACTGTGCCAACAAACCTTCCTATTGTCAATGAAGTCTTCAGTAACCCGAGAGCTATGCGTATACCACACACTTGTCCACTTGCTAGGATAAGACCTCTTGTCGGAAGATATGTGCCACCTGAAGTTGTTGCGGTTCGGGTGCCGCTTCTACATTTGTCAAATTTCCAAATTAATGATTGGCCTGAGCTTTCGGCAAAAAGTTATGCAATTATGGTTCTTATTCTCCCTACTGATAGTGCTAGAAAGTGGCGAGACCATGAGTTGGAGCTTGTCGATGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCCATGCGAGCCCGGGATCAACTCATGGAACAAAACGTTGCCTTAGATTTAGCTCGGCGAGAGGCTGAAATGGCAATTCATGCTCGCAATGATTTCCTTGCAGTCATGAATCATGAAATGAGAACACCGATGCATGCAATTATAGCATTGTCATCACTTCTTTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACTGTATTGAAGAGTAGTAATGTTTTGGCAGCACTTATCAATGATGTTCTAGATCTGTCCCGACTGGAAGATGGTAGCCTTGAATTAGAAATGGCAAAAATCAACCTTCATGGTGTTTTGGGAGAGGTCATTGAACTGATTAAGCCTATAGCATCTGTGAAAAAACTACCCATTACTTTAATTCTTGCCCCTGATCTACCTACTCATGCCATCGGTGATGAAAAGCGGCTTATGCAGACACTTTTGAATGTTGTGGGCAATGCTGTCAAATATACTAAGGAGGGCTATGTTTCTATAAGAGCTTCTGTTGCAAAACCAGAATCCTTACAGGATTGGCGACCTCCTGAGTTTTATCCAGCATCAAGTGATGGTCATTTCTATATACGAGTCCAGGTTAAGGATTCTGGATGTGGCATTCTACCACAAGATATTCCACATCTCTTTACCAAGTTTACTCAGTCTCAGAGTGGACCTGTTCGATCTAGCAGTGGTTCAGGTCTTGGACTAGCTATTTGTAAAAGATTTGTAAATCTCATGGGTGGGCACATATGGATGGAGAGCGAGGGTCACGATAAAGGAAGCACAGCTACATTTGTAGTCAAACTTGGGATTTGTGGCAATGCAGATCCATCCGATCATCAAGCTGCAAGCAGAGGCCAAGCATATAGTGGAAGTGGAGGCCTTGCTAGATTTAAGCACTTACTCAATGATGACGACATAGGTTTTTCTAATAGACGCAATCAAAGAAGTTTCTGA
Protein sequence

>Msa1165630

MMESCECIDTPYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSAHTKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVPTNLPIVNEVFSNPRAMRIPHTCPLARIRPLVGRYVPPEVVAVRVPLLHLSNFQINDWPELSAKSYAIMVLILPTDSARKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMAKINLHGVLGEVIELIKPIASVKKLPITLILAPDLPTHAIGDEKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFTQSQSGPVRSSSGSGLGLAICKRFVNLMGGHIWMESEGHDKGSTATFVVKLGICGNADPSDHQAASRGQAYSGSGGLARFKHLLNDDDIGFSNRRNQRSF*