AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165590 MtrunA17_Chr7g0269631 99.843 635 1 0 1 635 1 635 0.0 1310
Msa1165590 MtrunA17_Chr4g0013831 73.194 623 167 0 1 623 1 623 0.0 942
Msa1165590 MtrunA17_Chr1g0186431 42.007 588 325 9 5 586 29 606 1.37e-140 427
Msa1165590 MtrunA17_Chr1g0168161 40.210 572 323 11 5 567 28 589 7.65e-128 394
Msa1165590 MtrunA17_Chr7g0274831 38.035 631 325 15 5 598 34 635 7.75e-122 379
Msa1165590 MtrunA17_Chr1g0190021 38.088 638 358 15 3 623 26 643 2.88e-120 375
Msa1165590 MtrunA17_Chr5g0405701 33.721 258 145 4 334 567 499 754 9.93e-36 144
Msa1165590 MtrunA17_Chr3g0136601 32.258 341 179 11 300 596 331 663 1.25e-33 137
Msa1165590 MtrunA17_Chr8g0371601 32.031 256 152 3 334 567 461 716 5.56e-33 135
Msa1165590 MtrunA17_Chr8g0377481 30.357 280 162 4 335 582 383 661 2.13e-32 134
Msa1165590 MtrunA17_Chr3g0122391 28.333 300 175 5 335 598 431 726 8.11e-32 132
Msa1165590 MtrunA17_Chr5g0447641 30.389 283 158 5 338 582 611 892 6.59e-29 123
Msa1165590 MtrunA17_Chr8g0392301 30.820 305 156 6 338 588 377 680 7.56e-29 122
Msa1165590 MtrunA17_Chr1g0150511 32.973 185 116 4 300 483 337 514 2.42e-20 95.9
Msa1165590 MtrunA17_Chr1g0150511 38.393 112 64 3 484 592 585 694 8.15e-12 68.6
Msa1165590 MtrunA17_Chr1g0194741 26.846 298 160 11 312 563 367 652 2.03e-15 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165590 AT2G40940.1 76.962 599 138 0 2 600 1 599 0.0 935
Msa1165590 AT1G66340.1 71.383 622 174 1 2 623 1 618 0.0 900
Msa1165590 AT3G23150.2 40.555 577 306 14 5 562 32 590 1.41e-120 371
Msa1165590 AT3G23150.1 40.722 582 308 14 5 567 32 595 7.96e-120 374
Msa1165590 AT3G04580.2 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa1165590 AT3G04580.1 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa1165590 AT1G04310.1 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa1165590 AT1G04310.2 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa1165590 AT5G10720.1 32.500 320 186 8 323 619 339 651 9.92e-38 150
Msa1165590 AT2G17820.1 32.246 276 161 5 314 567 472 743 4.04e-35 142
Msa1165590 AT1G27320.1 29.885 348 185 7 266 582 398 717 6.85e-35 142
Msa1165590 AT5G35750.1 30.405 296 165 7 335 593 578 869 5.64e-31 130
Msa1165590 AT2G01830.5 29.545 308 165 5 338 597 455 758 3.00e-30 127
Msa1165590 AT2G01830.1 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165590 AT2G01830.4 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165590 AT2G01830.6 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165590 AT2G01830.3 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa1165590 AT2G01830.2 29.545 308 165 5 338 597 466 769 3.58e-30 127
Msa1165590 AT2G47430.1 27.491 291 167 10 334 586 385 669 1.60e-16 84.3
Msa1165590 AT4G16250.1 23.577 246 161 8 326 567 914 1136 6.27e-11 66.2

Find 175 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCACATGCTGCTATTT+TGG 0.127774 7_4:-57522584 Msa1165590:CDS
GATATAAAGATATGCAATTT+TGG 0.178667 7_4:+57521118 None:intergenic
GCTCAGGCCAATCATTAATT+TGG 0.179813 7_4:+57523760 None:intergenic
TTTGTGCAGGTTAAGGATTC+TGG 0.190806 7_4:-57521635 Msa1165590:intron
AATCAACCTTCATGGTGTTT+TGG 0.215357 7_4:-57522254 Msa1165590:CDS
CTGCTTTCTTTCCATATAGA+TGG 0.223591 7_4:-57524403 Msa1165590:CDS
GTGGAGTTGGGTAGGACTTT+AGG 0.238818 7_4:-57524038 Msa1165590:CDS
GATGGGTTCTTATGCAGTTT+GGG 0.252158 7_4:-57524385 Msa1165590:CDS
AGCATTGTCATCACTTCTTT+TGG 0.253771 7_4:-57522413 Msa1165590:CDS
CGCCAATCCTGTAAGGATTC+TGG 0.273695 7_4:+57521945 None:intergenic
TTGGACTAGCTATTTGTAAA+AGG 0.274567 7_4:-57521520 Msa1165590:intron
CGTTAGTTCAACCATTGATT+TGG 0.279070 7_4:-57520864 Msa1165590:three_prime_UTR
AGTGGATTGATACCGGAAAA+AGG 0.289080 7_4:+57525180 None:intergenic
GGAAATGAAGAAGAAGAAAA+AGG 0.297153 7_4:+57525279 None:intergenic
GCTCTTCCGCCTTGTTCTTA+AGG 0.299367 7_4:+57524177 None:intergenic
AGATGGGTTCTTATGCAGTT+TGG 0.302430 7_4:-57524386 Msa1165590:CDS
ACAAGGCGGAAGAGCTTGAT+AGG 0.308682 7_4:-57524169 Msa1165590:CDS
TGCAAAACCAGAATCCTTAC+AGG 0.315260 7_4:-57521952 Msa1165590:CDS
CAATGAAACTACAATATAAT+CGG 0.315913 7_4:+57520811 None:intergenic
TGCATAAGAACCCATCTATA+TGG 0.316824 7_4:+57524392 None:intergenic
AAGTCTCCGCCTAATCTATT+TGG 0.318508 7_4:-57525228 Msa1165590:five_prime_UTR
CAACATTCTCACATGTCTTC+CGG 0.319637 7_4:+57524115 None:intergenic
ATCTCATGGGTGGGCACATA+TGG 0.329280 7_4:-57521355 Msa1165590:CDS
TAATGATTGGCCTGAGCTTT+CGG 0.339005 7_4:-57523754 Msa1165590:CDS
CACCTGAAGTTGTTGCGGTT+CGG 0.344532 7_4:-57523809 Msa1165590:CDS
CAAATTTCCAAATTAATGAT+TGG 0.349017 7_4:-57523767 Msa1165590:CDS
TCTAGCAGTGGTTCAGGTCT+TGG 0.350863 7_4:-57521539 Msa1165590:CDS
TTCATTGAACCGAGTTAAAC+TGG 0.353085 7_4:-57520795 Msa1165590:three_prime_UTR
ATTGAAGAGTAGTAATGTTT+TGG 0.359573 7_4:-57522347 Msa1165590:CDS
CTGAAGACTTCATTGACAAT+AGG 0.366052 7_4:+57523906 None:intergenic
TGAACCACAATTGGTTCAAC+TGG 0.370506 7_4:-57520771 Msa1165590:three_prime_UTR
ATAGAAGACTTCAAGTATAA+AGG 0.374332 7_4:+57525337 None:intergenic
GAATGTTGACTCATGAAATT+AGG 0.375510 7_4:-57524100 Msa1165590:CDS
GAGAGCGAGGGTCACGATAA+AGG 0.377013 7_4:-57521329 Msa1165590:CDS
GCTGTTTGCAGCTATAGATT+AGG 0.378023 7_4:-57521039 Msa1165590:three_prime_UTR
ACCTGAAGTTGTTGCGGTTC+GGG 0.378789 7_4:-57523808 Msa1165590:CDS
TGTCGATGTTGTTGCAGATC+AGG 0.380378 7_4:-57523655 Msa1165590:intron
GTTAGTTCAACCATTGATTT+GGG 0.382348 7_4:-57520863 Msa1165590:three_prime_UTR
CTCTCGCCGAGCTAAATCTA+AGG 0.393829 7_4:+57522516 None:intergenic
TAAACTGGTTGAACCACAAT+TGG 0.408863 7_4:-57520780 Msa1165590:three_prime_UTR
ATGGCATGAGTAGGTAGATC+AGG 0.413426 7_4:+57522071 None:intergenic
AGATTCAAACCACTTCTTGA+TGG 0.415200 7_4:+57523990 None:intergenic
GTTCGATCTAGCAGTGGTTC+AGG 0.425531 7_4:-57521545 Msa1165590:CDS
CTCCACTTCCACTATATGCT+TGG 0.434484 7_4:+57521228 None:intergenic
ATTCATTGCTTAATATAACT+TGG 0.435679 7_4:-57520926 Msa1165590:three_prime_UTR
AAATTAGGAGCACTCTTGAT+AGG 0.435699 7_4:-57524085 Msa1165590:CDS
GGGGCAAGAATTAAAGTAAT+GGG 0.436802 7_4:+57522092 None:intergenic
GAGTTGATCCCGGGCTCGCA+TGG 0.439303 7_4:+57522555 None:intergenic
TACTTGACAAGAAGTTCATC+TGG 0.439756 7_4:+57524503 None:intergenic
AGCTCGGCGAGAGGCTGAAA+TGG 0.447274 7_4:-57522506 Msa1165590:CDS
AATGAAACTACAATATAATC+GGG 0.448185 7_4:+57520812 None:intergenic
ATTGATTGATATTCATATGA+AGG 0.448953 7_4:+57525258 None:intergenic
GCTACATTTGTAGTCAAACT+TGG 0.452125 7_4:-57521299 Msa1165590:CDS
GGGTAGGACTTTAGGATTGG+AGG 0.452722 7_4:-57524030 Msa1165590:CDS
ACCCGAACCGCAACAACTTC+AGG 0.453206 7_4:+57523807 None:intergenic
GGCCAAGCATATAGTGGAAG+TGG 0.455936 7_4:-57521230 Msa1165590:CDS
ATTCAGATTTGTAAATCTCA+TGG 0.457675 7_4:-57521369 Msa1165590:intron
ATTCTTACTCAGGAAGAAAC+CGG 0.461381 7_4:-57524134 Msa1165590:CDS
CCAAAATAGCAGCATGTGAA+AGG 0.461533 7_4:+57522584 None:intergenic
TTGTTCCATGAGTTGATCCC+GGG 0.464658 7_4:+57522546 None:intergenic
AGCAGAGGCCAAGCATATAG+TGG 0.467264 7_4:-57521236 Msa1165590:CDS
AGAAGTTCATCTGGAGGATA+AGG 0.468819 7_4:+57524512 None:intergenic
TTGACAATAGGAAGGTTTGT+TGG 0.470136 7_4:+57523918 None:intergenic
AAAGACCACTCTTGTGGAGT+TGG 0.471472 7_4:-57524051 Msa1165590:CDS
AAATCAATGGTTGAACTAAC+GGG 0.472002 7_4:+57520866 None:intergenic
TGGTAGCCTTGAATTAGAAA+TGG 0.472836 7_4:-57522281 Msa1165590:CDS
GTAGTCAAACTTGGGATTTG+TGG 0.473180 7_4:-57521290 Msa1165590:CDS
TGCTTTCTTTCCATATAGAT+GGG 0.474314 7_4:-57524402 Msa1165590:CDS
TTTGTTCCATGAGTTGATCC+CGG 0.480126 7_4:+57522545 None:intergenic
AAGACCACTCTTGTGGAGTT+GGG 0.480183 7_4:-57524050 Msa1165590:CDS
CAAATCAATGGTTGAACTAA+CGG 0.485230 7_4:+57520865 None:intergenic
ACAAAATAAATGAGTTCGAC+AGG 0.487975 7_4:+57524434 None:intergenic
GTTGGGTAGGACTTTAGGAT+TGG 0.493614 7_4:-57524033 Msa1165590:CDS
TGGAGGAGTCCATGCGAGCC+CGG 0.494071 7_4:-57522564 Msa1165590:CDS
TGTGGTATACGCATAGCTCT+CGG 0.503245 7_4:+57523879 None:intergenic
TCAACCATTGATTTGGGAGT+CGG 0.504463 7_4:-57520857 Msa1165590:three_prime_UTR
TCTATCATAACCCTCTGCTC+TGG 0.509698 7_4:+57522376 None:intergenic
GAACCACTGCTAGATCGAAC+AGG 0.510532 7_4:+57521548 None:intergenic
GGAGGAGTCCATGCGAGCCC+GGG 0.516805 7_4:-57522563 Msa1165590:CDS
GTTCTTAAGGAACAACTCAC+GGG 0.520997 7_4:+57524190 None:intergenic
AACCAGAATCCTTACAGGAT+TGG 0.521860 7_4:-57521947 Msa1165590:CDS
CGGAGTGCGCCAAATAGATT+AGG 0.523903 7_4:+57525219 None:intergenic
TTCAGATTTGTAAATCTCAT+GGG 0.524035 7_4:-57521368 Msa1165590:intron
TCTGCTTGCAGCTTGATGAT+CGG 0.525516 7_4:+57521253 None:intergenic
AGGAGGTCGCCAATCCTGTA+AGG 0.525729 7_4:+57521938 None:intergenic
TATAACTAGTTGATACGATA+GGG 0.528891 7_4:+57520971 None:intergenic
AAATGACCATCACTTGATGC+TGG 0.529879 7_4:+57521906 None:intergenic
GGAAGAGCTTGATAGGGAGA+TGG 0.530026 7_4:-57524162 Msa1165590:CDS
CTACATTTGTAGTCAAACTT+GGG 0.530312 7_4:-57521298 Msa1165590:CDS
GTGGTATACGCATAGCTCTC+GGG 0.531017 7_4:+57523880 None:intergenic
TGTTCTTAAGGAACAACTCA+CGG 0.533686 7_4:+57524189 None:intergenic
CTGAACTGACTCCAGAGCAG+AGG 0.535510 7_4:-57522387 Msa1165590:CDS
AAAACCAGTTGAACCAATTG+TGG 0.536954 7_4:+57520767 None:intergenic
GATGGGACTTATTCTTACTC+AGG 0.538781 7_4:-57524144 Msa1165590:CDS
CATGTGGGTGTGTTAGATGA+TGG 0.539856 7_4:-57524558 Msa1165590:exon
ATGGGTTCTTATGCAGTTTG+GGG 0.539955 7_4:-57524384 Msa1165590:CDS
TTAACTTATCATGTACAAGT+TGG 0.540061 7_4:-57523951 Msa1165590:CDS
ATCTTTATATCAATGTCGAC+TGG 0.540215 7_4:-57521106 Msa1165590:three_prime_UTR
GATCTGTCCCGACTGGAAGA+TGG 0.542916 7_4:-57522301 Msa1165590:CDS
TTACTCAATGATGACGACAT+AGG 0.543430 7_4:-57521185 Msa1165590:CDS
AGGGGCAAGAATTAAAGTAA+TGG 0.544261 7_4:+57522091 None:intergenic
ACTCTGAGACTGAGTAAACT+TGG 0.544636 7_4:+57521574 None:intergenic
TCATTTCTATATACGAGTCC+AGG 0.548157 7_4:-57521889 Msa1165590:intron
GAAGAGCTTGATAGGGAGAT+GGG 0.548570 7_4:-57524161 Msa1165590:CDS
CAATGCTGTCAAATATACTA+AGG 0.548729 7_4:-57522003 Msa1165590:CDS
CATGGGTGGGCACATATGGA+TGG 0.549664 7_4:-57521351 Msa1165590:CDS
GCGAGCCCGGGATCAACTCA+TGG 0.550447 7_4:-57522551 Msa1165590:CDS
GTATAACTAGTTGATACGAT+AGG 0.554353 7_4:+57520970 None:intergenic
AAGGCTACCATCTTCCAGTC+GGG 0.554665 7_4:+57522294 None:intergenic
CAAAATAGCAGCATGTGAAA+GGG 0.558668 7_4:+57522585 None:intergenic
CACTTTCTAGCACTATCAGT+AGG 0.560837 7_4:+57523699 None:intergenic
CTTGATGCTGGATAAAACTC+AGG 0.561674 7_4:+57521918 None:intergenic
CAGGTTAAGGATTCTGGATG+TGG 0.561926 7_4:-57521629 Msa1165590:CDS
GTGTTATGTTTGTGTTGTGG+TGG 0.565848 7_4:+57525309 None:intergenic
GAGTCGGTTAGTTCATCAGT+TGG 0.566578 7_4:-57520841 Msa1165590:three_prime_UTR
CTTGCAGCTTGATGATCGGA+TGG 0.567335 7_4:+57521257 None:intergenic
CTAACCGACTCCCAAATCAA+TGG 0.568057 7_4:+57520853 None:intergenic
CAAGGCGGAAGAGCTTGATA+GGG 0.569408 7_4:-57524168 Msa1165590:CDS
CATCGACAAGCTCCAACTCA+TGG 0.570916 7_4:+57523670 None:intergenic
ATCTAACACACCCACATGAA+AGG 0.572240 7_4:+57524563 None:intergenic
TGGCATGAGTAGGTAGATCA+GGG 0.573826 7_4:+57522072 None:intergenic
AGATTTGTAAATCTCATGGG+TGG 0.574861 7_4:-57521365 Msa1165590:CDS
ACGTTGCCTTAGATTTAGCT+CGG 0.574999 7_4:-57522522 Msa1165590:CDS
TGCTGTCAAATATACTAAGG+AGG 0.577420 7_4:-57522000 Msa1165590:CDS
GCTGTCAAATATACTAAGGA+GGG 0.577474 7_4:-57521999 Msa1165590:CDS
TATTCTAAAGACCACTCTTG+TGG 0.580698 7_4:-57524057 Msa1165590:CDS
GTAAACTTGGTAAAGAGATG+TGG 0.583173 7_4:+57521587 None:intergenic
TGTTATGTTTGTGTTGTGGT+GGG 0.584084 7_4:+57525310 None:intergenic
CTACTGATAGTGCTAGAAAG+TGG 0.585604 7_4:-57523698 Msa1165590:CDS
GCTAGGATAAGACCTCTTGT+CGG 0.586111 7_4:-57523843 Msa1165590:CDS
TGTTCTAGATCTGTCCCGAC+TGG 0.586169 7_4:-57522308 Msa1165590:CDS
CACACACTTGTCCACTTGCT+AGG 0.588144 7_4:-57523860 Msa1165590:CDS
TTTCATGATTCATGACTGCA+AGG 0.589191 7_4:+57522461 None:intergenic
CCACTCTTGTGGAGTTGGGT+AGG 0.594476 7_4:-57524046 Msa1165590:CDS
GATTTGTAAATCTCATGGGT+GGG 0.596709 7_4:-57521364 Msa1165590:CDS
ACTTTCTAGCACTATCAGTA+GGG 0.597780 7_4:+57523700 None:intergenic
AGACTTCATTGACAATAGGA+AGG 0.597850 7_4:+57523910 None:intergenic
GTAAGTGCTTAAATCTAGCA+AGG 0.598885 7_4:+57521204 None:intergenic
CAAGGCTACCATCTTCCAGT+CGG 0.599285 7_4:+57522293 None:intergenic
TGAACTGACTCCAGAGCAGA+GGG 0.605152 7_4:-57522386 Msa1165590:CDS
AGAGTGTTATGTTTGTGTTG+TGG 0.609297 7_4:+57525306 None:intergenic
TGAGTTGTTCCTTAAGAACA+AGG 0.610418 7_4:-57524186 Msa1165590:CDS
GCACATATGGATGGAGAGCG+AGG 0.610844 7_4:-57521342 Msa1165590:CDS
GGCACATATCTTCCGACAAG+AGG 0.613814 7_4:+57523831 None:intergenic
AAGAGATGTGGAATATCTTG+TGG 0.615014 7_4:+57521599 None:intergenic
GTGGTTCAACCAGTTTAACT+CGG 0.615420 7_4:+57520786 None:intergenic
AGAGGTCTTATCCTAGCAAG+TGG 0.615685 7_4:+57523849 None:intergenic
TCATCACCGATGGCATGAGT+AGG 0.616501 7_4:+57522062 None:intergenic
CTTAGATTTAGCTCGGCGAG+AGG 0.619358 7_4:-57522515 Msa1165590:CDS
AGCACACGACACTTTAGCGA+TGG 0.621416 7_4:+57524277 None:intergenic
AAAGTGGCGAGACCATGAGT+TGG 0.625466 7_4:-57523682 Msa1165590:CDS
AAATTTGACAAATGTAGAAG+CGG 0.631499 7_4:+57523783 None:intergenic
GATCATCAAGCTGCAAGCAG+AGG 0.631663 7_4:-57521251 Msa1165590:CDS
CAAGCATATAGTGGAAGTGG+AGG 0.635632 7_4:-57521227 Msa1165590:CDS
ATGCCATCGGTGATGAAAAG+CGG 0.635694 7_4:-57522055 Msa1165590:CDS
AAGGGAGGTAGATCAGGCGG+CGG 0.636261 7_4:+57525199 None:intergenic
TGTGCCACCTGAAGTTGTTG+CGG 0.636371 7_4:-57523814 Msa1165590:CDS
ATGAACAAGCATAAGTGCAG+TGG 0.643228 7_4:+57524241 None:intergenic
CCTACCCAACTCCACAAGAG+TGG 0.646184 7_4:+57524046 None:intergenic
GATCTACCTACTCATGCCAT+CGG 0.647848 7_4:-57522068 Msa1165590:CDS
CCTCTCCCAAAACACCATGA+AGG 0.651300 7_4:+57522248 None:intergenic
CACATATGGATGGAGAGCGA+GGG 0.654671 7_4:-57521341 Msa1165590:CDS
GGACCTGTTCGATCTAGCAG+TGG 0.657911 7_4:-57521551 Msa1165590:CDS
CGAACCGCAACAACTTCAGG+TGG 0.664993 7_4:+57523810 None:intergenic
CTGTGGATGCCATCAAGAAG+TGG 0.665478 7_4:-57523999 Msa1165590:CDS
AGTGCGCCAAATAGATTAGG+CGG 0.682072 7_4:+57525222 None:intergenic
TTGACAAGAAGTTCATCTGG+AGG 0.684589 7_4:+57524506 None:intergenic
GATGCTGGATAAAACTCAGG+AGG 0.685050 7_4:+57521921 None:intergenic
CTAGCAAGTGGACAAGTGTG+TGG 0.685475 7_4:+57523861 None:intergenic
AATGCTATAATTGCATGCAT+CGG 0.690508 7_4:+57522430 None:intergenic
GGCATGAGTAGGTAGATCAG+GGG 0.696928 7_4:+57522073 None:intergenic
ATGAAACTACAATATAATCG+GGG 0.698950 7_4:+57520813 None:intergenic
AAGTTTACTCAGTCTCAGAG+TGG 0.708425 7_4:-57521572 Msa1165590:CDS
GTTGTTCCTTAAGAACAAGG+CGG 0.762407 7_4:-57524183 Msa1165590:CDS
GATTGGAGGAATGTGCACTG+TGG 0.783064 7_4:-57524016 Msa1165590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTCTTTTATTTTAT+TGG - chr7_4:57522456-57522475 Msa1165590:CDS 10.0%
!! AGTATATTAAATAGTAGTAT+TGG + chr7_4:57521103-57521122 None:intergenic 15.0%
!! ATTGATTGATATTCATATGA+AGG + chr7_4:57520829-57520848 None:intergenic 20.0%
!! AAAAATATATATAGAGAGAG+TGG + chr7_4:57520925-57520944 None:intergenic 20.0%
!!! TAAATAGTAGTATTGGATAA+TGG + chr7_4:57521096-57521115 None:intergenic 20.0%
!! CAAATTTCCAAATTAATGAT+TGG - chr7_4:57522317-57522336 Msa1165590:CDS 20.0%
!! ATACGGAATAAAAATATTCA+GGG + chr7_4:57522494-57522513 None:intergenic 20.0%
!! AATACGGAATAAAAATATTC+AGG + chr7_4:57522495-57522514 None:intergenic 20.0%
!! AATAGTTGAAAATTAGGAAA+TGG - chr7_4:57522637-57522656 Msa1165590:intron 20.0%
!! GTATTAAATACAAATATCAC+AGG + chr7_4:57522845-57522864 None:intergenic 20.0%
!!! AAAGTTTCAGGTATTTAATT+TGG + chr7_4:57523228-57523247 None:intergenic 20.0%
!!! AAACTTTTCATTCAATTGTA+TGG - chr7_4:57523241-57523260 Msa1165590:intron 20.0%
!! AATTTCAAACACAGTTAATA+TGG + chr7_4:57523303-57523322 None:intergenic 20.0%
!! AATTCAATCACATTAACATA+TGG + chr7_4:57524257-57524276 None:intergenic 20.0%
!! TTAATATGCATTTCACATAA+GGG + chr7_4:57524639-57524658 None:intergenic 20.0%
!!! GATATAAAGATATGCAATTT+TGG + chr7_4:57524969-57524988 None:intergenic 20.0%
!! ATTCATTGCTTAATATAACT+TGG - chr7_4:57525158-57525177 Msa1165590:intron 20.0%
!!! TTTAGGCTATGTTTTAAAAT+CGG - chr7_4:57525189-57525208 Msa1165590:intron 20.0%
!! AATGAAACTACAATATAATC+GGG + chr7_4:57525275-57525294 None:intergenic 20.0%
!! CAATGAAACTACAATATAAT+CGG + chr7_4:57525276-57525295 None:intergenic 20.0%
! ATAGAAGACTTCAAGTATAA+AGG + chr7_4:57520750-57520769 None:intergenic 25.0%
!!! AGCTACTGTTTTTTCTTTTT+TGG - chr7_4:57521278-57521297 Msa1165590:CDS 25.0%
!! CAACTCATTTTATAAATCTG+TGG - chr7_4:57521744-57521763 Msa1165590:intron 25.0%
! TTAACTTATCATGTACAAGT+TGG - chr7_4:57522133-57522152 Msa1165590:CDS 25.0%
! AAATTTGACAAATGTAGAAG+CGG + chr7_4:57522304-57522323 None:intergenic 25.0%
! AATAGAAAACAACGGAAATA+CGG + chr7_4:57522511-57522530 None:intergenic 25.0%
! AGAAAAGGAATAGAAAACAA+CGG + chr7_4:57522519-57522538 None:intergenic 25.0%
! GTTTAAGCAATCAAAAGAAA+AGG + chr7_4:57522534-57522553 None:intergenic 25.0%
! GCATAGAATAGTTGAAAATT+AGG - chr7_4:57522631-57522650 Msa1165590:intron 25.0%
! AAATAACTATAAAGCCCAAA+TGG + chr7_4:57522677-57522696 None:intergenic 25.0%
! CTTAAGTAAAGAACCATATT+AGG - chr7_4:57522738-57522757 Msa1165590:intron 25.0%
! ACTAAATTTAAGAACGAGAT+TGG - chr7_4:57523031-57523050 Msa1165590:intron 25.0%
! AAATTTACAACAAATGTGTG+TGG - chr7_4:57523143-57523162 Msa1165590:intron 25.0%
! AATTTACAACAAATGTGTGT+GGG - chr7_4:57523144-57523163 Msa1165590:intron 25.0%
! GAATAAAACACTTAAAAGTC+AGG + chr7_4:57523171-57523190 None:intergenic 25.0%
!!! GGTATTTAATTTGGTCTTTT+CGG + chr7_4:57523219-57523238 None:intergenic 25.0%
! ACAATTGAATGAAAAGTTTC+AGG + chr7_4:57523240-57523259 None:intergenic 25.0%
!! ATTGAAGAGTAGTAATGTTT+TGG - chr7_4:57523737-57523756 Msa1165590:CDS 25.0%
!!! TTTTTGCCATTTCTAATTCA+AGG + chr7_4:57523812-57523831 None:intergenic 25.0%
! TGTTAATGTGATTGAATTCT+TGG - chr7_4:57524259-57524278 Msa1165590:CDS 25.0%
! GTTAATGTGATTGAATTCTT+GGG - chr7_4:57524260-57524279 Msa1165590:CDS 25.0%
! AAGTCGATAACATAATGAAA+AGG + chr7_4:57524357-57524376 None:intergenic 25.0%
! CAACTGTTAGAAATTAATCT+AGG - chr7_4:57524387-57524406 Msa1165590:CDS 25.0%
! ATTTCACATAAGGGTAATAA+TGG + chr7_4:57524630-57524649 None:intergenic 25.0%
! GTTAATATGCATTTCACATA+AGG + chr7_4:57524640-57524659 None:intergenic 25.0%
! ATTCAGATTTGTAAATCTCA+TGG - chr7_4:57524715-57524734 Msa1165590:intron 25.0%
! TTCAGATTTGTAAATCTCAT+GGG - chr7_4:57524716-57524735 Msa1165590:intron 25.0%
!! TATAACTAGTTGATACGATA+GGG + chr7_4:57525116-57525135 None:intergenic 25.0%
! ATGAAACTACAATATAATCG+GGG + chr7_4:57525274-57525293 None:intergenic 25.0%
GGAAATGAAGAAGAAGAAAA+AGG + chr7_4:57520808-57520827 None:intergenic 30.0%
CTAACATGAGCATTATTGAA+TGG + chr7_4:57520963-57520982 None:intergenic 30.0%
ACATAAATAAACCCAATCTG+AGG + chr7_4:57521322-57521341 None:intergenic 30.0%
! TTCTGTTTTCTTGTTCTTGT+TGG - chr7_4:57521365-57521384 Msa1165590:CDS 30.0%
! TTTTACAGATCCTTTCATGT+GGG - chr7_4:57521511-57521530 Msa1165590:intron 30.0%
ACAAAATAAATGAGTTCGAC+AGG + chr7_4:57521653-57521672 None:intergenic 30.0%
TGCTTTCTTTCCATATAGAT+GGG - chr7_4:57521682-57521701 Msa1165590:intron 30.0%
!! GAATGTTGACTCATGAAATT+AGG - chr7_4:57521984-57522003 Msa1165590:CDS 30.0%
GGCAAAAAGTTATGCAATTA+TGG - chr7_4:57522351-57522370 Msa1165590:CDS 30.0%
!! TAGTTATTTCTCAACCATCA+AGG - chr7_4:57522688-57522707 Msa1165590:intron 30.0%
GAAAAGAAAACGACATAAGA+TGG + chr7_4:57522916-57522935 None:intergenic 30.0%
! AAATCAAAATTAGACTGGCT+CGG + chr7_4:57522953-57522972 None:intergenic 30.0%
!!! AGCCAGTCTAATTTTGATTT+TGG - chr7_4:57522953-57522972 Msa1165590:intron 30.0%
! TTTTGGCCATTGAAGATATA+TGG - chr7_4:57522970-57522989 Msa1165590:intron 30.0%
TAAGAACGAGATTGGAAAAA+TGG - chr7_4:57523039-57523058 Msa1165590:intron 30.0%
AAGAACGAGATTGGAAAAAT+GGG - chr7_4:57523040-57523059 Msa1165590:intron 30.0%
!! TAATTTGGTCTTTTCGGATT+AGG + chr7_4:57523213-57523232 None:intergenic 30.0%
! CATTCAATTGTATGGCTTTT+AGG - chr7_4:57523249-57523268 Msa1165590:intron 30.0%
ATATCAGCACTAGAAAATGT+TGG + chr7_4:57523349-57523368 None:intergenic 30.0%
!!! AACATTTTCTAGTGCTGATA+TGG - chr7_4:57523348-57523367 Msa1165590:intron 30.0%
! AACTAAATGGATTCAGCATA+CGG + chr7_4:57523460-57523479 None:intergenic 30.0%
! AATCCATTTAGTTTCCATAC+AGG - chr7_4:57523467-57523486 Msa1165590:intron 30.0%
AATGCTATAATTGCATGCAT+CGG + chr7_4:57523657-57523676 None:intergenic 30.0%
CAATACATAAATGCTGTTCA+TGG + chr7_4:57523910-57523929 None:intergenic 30.0%
! TGCTTTTCTATTGTTAATGC+AGG - chr7_4:57523928-57523947 Msa1165590:CDS 30.0%
!!! AGTTTTTTCACAGATGCTAT+AGG + chr7_4:57523971-57523990 None:intergenic 30.0%
CAATGCTGTCAAATATACTA+AGG - chr7_4:57524081-57524100 Msa1165590:CDS 30.0%
GAAAAGGTAGAGATATCTTT+GGG + chr7_4:57524341-57524360 None:intergenic 30.0%
TGAAAAGGTAGAGATATCTT+TGG + chr7_4:57524342-57524361 None:intergenic 30.0%
!! TTGGACTAGCTATTTGTAAA+AGG - chr7_4:57524564-57524583 Msa1165590:exon 30.0%
ACTAGCTATTTGTAAAAGGT+AGG - chr7_4:57524568-57524587 Msa1165590:five_prime_UTR 30.0%
CTAGCTATTTGTAAAAGGTA+GGG - chr7_4:57524569-57524588 Msa1165590:intron 30.0%
CTACATTTGTAGTCAAACTT+GGG - chr7_4:57524786-57524805 Msa1165590:intron 30.0%
!!! AGATATGCAATTTTGGTGTT+TGG + chr7_4:57524962-57524981 None:intergenic 30.0%
ATCTTTATATCAATGTCGAC+TGG - chr7_4:57524978-57524997 Msa1165590:intron 30.0%
! GTATAACTAGTTGATACGAT+AGG + chr7_4:57525117-57525136 None:intergenic 30.0%
! ATAACTTGGAGCAGTATTTT+AGG - chr7_4:57525172-57525191 Msa1165590:intron 30.0%
AAATCAATGGTTGAACTAAC+GGG + chr7_4:57525221-57525240 None:intergenic 30.0%
CAAATCAATGGTTGAACTAA+CGG + chr7_4:57525222-57525241 None:intergenic 30.0%
!! GTTAGTTCAACCATTGATTT+GGG - chr7_4:57525221-57525240 Msa1165590:five_prime_UTR 30.0%
TGTTATGTTTGTGTTGTGGT+GGG + chr7_4:57520777-57520796 None:intergenic 35.0%
! AGAGTGTTATGTTTGTGTTG+TGG + chr7_4:57520781-57520800 None:intergenic 35.0%
CGTAAGATTCGAGTAATTGT+TGG - chr7_4:57521169-57521188 Msa1165590:CDS 35.0%
! ATATTTAGATTCGTGCTGCT+GGG - chr7_4:57521206-57521225 Msa1165590:CDS 35.0%
TCAAACTCAATACCTCAGAT+TGG - chr7_4:57521307-57521326 Msa1165590:CDS 35.0%
CAAACTCAATACCTCAGATT+GGG - chr7_4:57521308-57521327 Msa1165590:CDS 35.0%
!!! GTTCTTGTTGGTTTTGAACT+TGG - chr7_4:57521377-57521396 Msa1165590:intron 35.0%
ACGGGTTCAAAAACAAAAAG+TGG + chr7_4:57521468-57521487 None:intergenic 35.0%
! CTTTTACAGATCCTTTCATG+TGG - chr7_4:57521510-57521529 Msa1165590:intron 35.0%
TACTTGACAAGAAGTTCATC+TGG + chr7_4:57521584-57521603 None:intergenic 35.0%
CTGCTTTCTTTCCATATAGA+TGG - chr7_4:57521681-57521700 Msa1165590:intron 35.0%
TGCATAAGAACCCATCTATA+TGG + chr7_4:57521695-57521714 None:intergenic 35.0%
!! GTTTTAACACTCAACAGATC+GGG + chr7_4:57521875-57521894 None:intergenic 35.0%
!! GGTTTTAACACTCAACAGAT+CGG + chr7_4:57521876-57521895 None:intergenic 35.0%
TGTTCTTAAGGAACAACTCA+CGG + chr7_4:57521898-57521917 None:intergenic 35.0%
TGAGTTGTTCCTTAAGAACA+AGG - chr7_4:57521898-57521917 Msa1165590:CDS 35.0%
ATTCTTACTCAGGAAGAAAC+CGG - chr7_4:57521950-57521969 Msa1165590:CDS 35.0%
!! AAATTAGGAGCACTCTTGAT+AGG - chr7_4:57521999-57522018 Msa1165590:CDS 35.0%
! TATTCTAAAGACCACTCTTG+TGG - chr7_4:57522027-57522046 Msa1165590:CDS 35.0%
AGATTCAAACCACTTCTTGA+TGG + chr7_4:57522097-57522116 None:intergenic 35.0%
TTGACAATAGGAAGGTTTGT+TGG + chr7_4:57522169-57522188 None:intergenic 35.0%
AGACTTCATTGACAATAGGA+AGG + chr7_4:57522177-57522196 None:intergenic 35.0%
CTGAAGACTTCATTGACAAT+AGG + chr7_4:57522181-57522200 None:intergenic 35.0%
! ACTTTCTAGCACTATCAGTA+GGG + chr7_4:57522387-57522406 None:intergenic 35.0%
!! CTATTGCTGTGAACTTGTTT+TGG - chr7_4:57522600-57522619 Msa1165590:intron 35.0%
!!! TGTGAACTTGTTTTGGAGTT+TGG - chr7_4:57522607-57522626 Msa1165590:intron 35.0%
AGGAAATGGCTATCAATCAT+TGG - chr7_4:57522651-57522670 Msa1165590:intron 35.0%
CTATCAATCATTGGCCATTT+GGG - chr7_4:57522660-57522679 Msa1165590:intron 35.0%
TATTCTGTCTTCTACCTTGA+TGG + chr7_4:57522705-57522724 None:intergenic 35.0%
GGTTCTTTACTTAAGTCACT+AGG + chr7_4:57522733-57522752 None:intergenic 35.0%
AACCATATTAGGTATGCATG+TGG - chr7_4:57522749-57522768 Msa1165590:intron 35.0%
TCCCAATAAGTGGCTAAAAA+AGG - chr7_4:57522794-57522813 Msa1165590:intron 35.0%
!!! CCCTTTTTTAGCCACTTATT+GGG + chr7_4:57522798-57522817 None:intergenic 35.0%
CCCAATAAGTGGCTAAAAAA+GGG - chr7_4:57522795-57522814 Msa1165590:intron 35.0%
!!! TCCCTTTTTTAGCCACTTAT+TGG + chr7_4:57522799-57522818 None:intergenic 35.0%
AATAAGTGGCTAAAAAAGGG+AGG - chr7_4:57522798-57522817 Msa1165590:intron 35.0%
ATAAGTGGCTAAAAAAGGGA+GGG - chr7_4:57522799-57522818 Msa1165590:intron 35.0%
ATGTGTAAACTATATCGCAG+AGG + chr7_4:57522888-57522907 None:intergenic 35.0%
TCTGCGATATAGTTTACACA+TGG - chr7_4:57522887-57522906 Msa1165590:intron 35.0%
GGCCAAAATCAAAATTAGAC+TGG + chr7_4:57522958-57522977 None:intergenic 35.0%
CTCAATATCAAGACTGAGAT+AGG - chr7_4:57522996-57523015 Msa1165590:intron 35.0%
AGAACGAGATTGGAAAAATG+GGG - chr7_4:57523041-57523060 Msa1165590:intron 35.0%
!! ATGTTGGCGACATTTTGAAA+CGG + chr7_4:57523333-57523352 None:intergenic 35.0%
CTACCTGTATGGAAACTAAA+TGG + chr7_4:57523473-57523492 None:intergenic 35.0%
CAAAATAGCAGCATGTGAAA+GGG + chr7_4:57523502-57523521 None:intergenic 35.0%
TTTCATGATTCATGACTGCA+AGG + chr7_4:57523626-57523645 None:intergenic 35.0%
! AGCATTGTCATCACTTCTTT+TGG - chr7_4:57523671-57523690 Msa1165590:CDS 35.0%
! TGGTAGCCTTGAATTAGAAA+TGG - chr7_4:57523803-57523822 Msa1165590:CDS 35.0%
ATGGCAAAAATCAACCTTCA+TGG - chr7_4:57523822-57523841 Msa1165590:CDS 35.0%
! AATCAACCTTCATGGTGTTT+TGG - chr7_4:57523830-57523849 Msa1165590:CDS 35.0%
! ATCAACCTTCATGGTGTTTT+GGG - chr7_4:57523831-57523850 Msa1165590:CDS 35.0%
GGGGCAAGAATTAAAGTAAT+GGG + chr7_4:57523995-57524014 None:intergenic 35.0%
AGGGGCAAGAATTAAAGTAA+TGG + chr7_4:57523996-57524015 None:intergenic 35.0%
! CAGACACTTTTGAATGTTGT+GGG - chr7_4:57524058-57524077 Msa1165590:CDS 35.0%
TGCTGTCAAATATACTAAGG+AGG - chr7_4:57524084-57524103 Msa1165590:CDS 35.0%
GCTGTCAAATATACTAAGGA+GGG - chr7_4:57524085-57524104 Msa1165590:CDS 35.0%
! TTTTATCCAGCATCAAGTGA+TGG - chr7_4:57524172-57524191 Msa1165590:CDS 35.0%
TCATTTCTATATACGAGTCC+AGG - chr7_4:57524195-57524214 Msa1165590:CDS 35.0%
TCATCCATACCTACATTTCT+AGG - chr7_4:57524309-57524328 Msa1165590:CDS 35.0%
CTTTCCTAGAAATGTAGGTA+TGG + chr7_4:57524316-57524335 None:intergenic 35.0%
AAGAGATGTGGAATATCTTG+TGG + chr7_4:57524488-57524507 None:intergenic 35.0%
GTAAACTTGGTAAAGAGATG+TGG + chr7_4:57524500-57524519 None:intergenic 35.0%
AGATTTGTAAATCTCATGGG+TGG - chr7_4:57524719-57524738 Msa1165590:intron 35.0%
GATTTGTAAATCTCATGGGT+GGG - chr7_4:57524720-57524739 Msa1165590:intron 35.0%
GCTACATTTGTAGTCAAACT+TGG - chr7_4:57524785-57524804 Msa1165590:intron 35.0%
GTAAGTGCTTAAATCTAGCA+AGG + chr7_4:57524883-57524902 None:intergenic 35.0%
! TTACTCAATGATGACGACAT+AGG - chr7_4:57524899-57524918 Msa1165590:intron 35.0%
! CGTTAGTTCAACCATTGATT+TGG - chr7_4:57525220-57525239 Msa1165590:five_prime_UTR 35.0%
TTCATTGAACCGAGTTAAAC+TGG - chr7_4:57525289-57525308 Msa1165590:five_prime_UTR 35.0%
TAAACTGGTTGAACCACAAT+TGG - chr7_4:57525304-57525323 Msa1165590:five_prime_UTR 35.0%
AAAACCAGTTGAACCAATTG+TGG + chr7_4:57525320-57525339 None:intergenic 35.0%
GTGTTATGTTTGTGTTGTGG+TGG + chr7_4:57520778-57520797 None:intergenic 40.0%
AAGTCTCCGCCTAATCTATT+TGG - chr7_4:57520856-57520875 Msa1165590:three_prime_UTR 40.0%
! GTGGATTGATACCGGAAAAA+GGG + chr7_4:57520906-57520925 None:intergenic 40.0%
!! AGTGGATTGATACCGGAAAA+AGG + chr7_4:57520907-57520926 None:intergenic 40.0%
!! TAGAGAGAGTGGATTGATAC+CGG + chr7_4:57520914-57520933 None:intergenic 40.0%
CATATTTAGATTCGTGCTGC+TGG - chr7_4:57521205-57521224 Msa1165590:CDS 40.0%
ATAGCATAGGTTGTCATCAC+GGG + chr7_4:57521486-57521505 None:intergenic 40.0%
CATAGCATAGGTTGTCATCA+CGG + chr7_4:57521487-57521506 None:intergenic 40.0%
!! CTGTAAAAGCACCATAGCAT+AGG + chr7_4:57521499-57521518 None:intergenic 40.0%
ATCTAACACACCCACATGAA+AGG + chr7_4:57521524-57521543 None:intergenic 40.0%
AGAAGTTCATCTGGAGGATA+AGG + chr7_4:57521575-57521594 None:intergenic 40.0%
TTGACAAGAAGTTCATCTGG+AGG + chr7_4:57521581-57521600 None:intergenic 40.0%
! AGATGGGTTCTTATGCAGTT+TGG - chr7_4:57521698-57521717 Msa1165590:intron 40.0%
! GATGGGTTCTTATGCAGTTT+GGG - chr7_4:57521699-57521718 Msa1165590:intron 40.0%
ATGGGTTCTTATGCAGTTTG+GGG - chr7_4:57521700-57521719 Msa1165590:intron 40.0%
! GGGGCTTTTATTGTTCTATG+TGG - chr7_4:57521719-57521738 Msa1165590:intron 40.0%
ATGAACAAGCATAAGTGCAG+TGG + chr7_4:57521846-57521865 None:intergenic 40.0%
GTTCTTAAGGAACAACTCAC+GGG + chr7_4:57521897-57521916 None:intergenic 40.0%
GTTGTTCCTTAAGAACAAGG+CGG - chr7_4:57521901-57521920 Msa1165590:CDS 40.0%
GATGGGACTTATTCTTACTC+AGG - chr7_4:57521940-57521959 Msa1165590:CDS 40.0%
CAACATTCTCACATGTCTTC+CGG + chr7_4:57521972-57521991 None:intergenic 40.0%
GCTCAGGCCAATCATTAATT+TGG + chr7_4:57522327-57522346 None:intergenic 40.0%
!! TAATGATTGGCCTGAGCTTT+CGG - chr7_4:57522330-57522349 Msa1165590:CDS 40.0%
! TAACTTTTTGCCGAAAGCTC+AGG + chr7_4:57522343-57522362 None:intergenic 40.0%
! CACTTTCTAGCACTATCAGT+AGG + chr7_4:57522388-57522407 None:intergenic 40.0%
! CTACTGATAGTGCTAGAAAG+TGG - chr7_4:57522386-57522405 Msa1165590:CDS 40.0%
AGACTCAGAACAGAACTTAC+AGG + chr7_4:57522578-57522597 None:intergenic 40.0%
GCTATCAATCATTGGCCATT+TGG - chr7_4:57522659-57522678 Msa1165590:intron 40.0%
CTCCACATGCATACCTAATA+TGG + chr7_4:57522754-57522773 None:intergenic 40.0%
TGGCCATTGAAGATATATGG+TGG - chr7_4:57522973-57522992 Msa1165590:intron 40.0%
GAGCCACCATATATCTTCAA+TGG + chr7_4:57522979-57522998 None:intergenic 40.0%
TATCAAGACTGAGATAGGCT+CGG - chr7_4:57523001-57523020 Msa1165590:intron 40.0%
AATCTGATGCAGATCTGTCT+AGG - chr7_4:57523118-57523137 Msa1165590:intron 40.0%
!! TTTGGTCTTTTCGGATTAGG+AGG + chr7_4:57523210-57523229 None:intergenic 40.0%
! TAAATGGATTCAGCATACGG+AGG + chr7_4:57523457-57523476 None:intergenic 40.0%
CCAAAATAGCAGCATGTGAA+AGG + chr7_4:57523503-57523522 None:intergenic 40.0%
!! CCTTTCACATGCTGCTATTT+TGG - chr7_4:57523500-57523519 Msa1165590:intron 40.0%
!!! TTCACATGCTGCTATTTTGG+AGG - chr7_4:57523503-57523522 Msa1165590:intron 40.0%
!! TTTGTTCCATGAGTTGATCC+CGG + chr7_4:57523542-57523561 None:intergenic 40.0%
ACGTTGCCTTAGATTTAGCT+CGG - chr7_4:57523562-57523581 Msa1165590:intron 40.0%
! GCAGACACTTTTGAATGTTG+TGG - chr7_4:57524057-57524076 Msa1165590:CDS 40.0%
TGCAAAACCAGAATCCTTAC+AGG - chr7_4:57524132-57524151 Msa1165590:CDS 40.0%
AACCAGAATCCTTACAGGAT+TGG - chr7_4:57524137-57524156 Msa1165590:CDS 40.0%
CTTGATGCTGGATAAAACTC+AGG + chr7_4:57524169-57524188 None:intergenic 40.0%
AAATGACCATCACTTGATGC+TGG + chr7_4:57524181-57524200 None:intergenic 40.0%
TGCACAAAGAAGGATGTTTG+GGG + chr7_4:57524437-57524456 None:intergenic 40.0%
CTGCACAAAGAAGGATGTTT+GGG + chr7_4:57524438-57524457 None:intergenic 40.0%
ATCCTTCTTTGTGCAGGTTA+AGG - chr7_4:57524442-57524461 Msa1165590:CDS 40.0%
ATCCTTAACCTGCACAAAGA+AGG + chr7_4:57524447-57524466 None:intergenic 40.0%
TTTGTGCAGGTTAAGGATTC+TGG - chr7_4:57524449-57524468 Msa1165590:CDS 40.0%
!! ACTCTGAGACTGAGTAAACT+TGG + chr7_4:57524513-57524532 None:intergenic 40.0%
AAGTTTACTCAGTCTCAGAG+TGG - chr7_4:57524512-57524531 Msa1165590:CDS 40.0%
!! GGTAATAATGGTGACTTGCT+AGG + chr7_4:57524618-57524637 None:intergenic 40.0%
GTAGTCAAACTTGGGATTTG+TGG - chr7_4:57524794-57524813 Msa1165590:intron 40.0%
GCTGTTTGCAGCTATAGATT+AGG - chr7_4:57525045-57525064 Msa1165590:intron 40.0%
!! TCAACCATTGATTTGGGAGT+CGG - chr7_4:57525227-57525246 Msa1165590:five_prime_UTR 40.0%
GTGGTTCAACCAGTTTAACT+CGG + chr7_4:57525301-57525320 None:intergenic 40.0%
! TGAACCACAATTGGTTCAAC+TGG - chr7_4:57525313-57525332 Msa1165590:five_prime_UTR 40.0%
AGTGCGCCAAATAGATTAGG+CGG + chr7_4:57520865-57520884 None:intergenic 45.0%
AAAAAGGGAGGTAGATCAGG+CGG + chr7_4:57520891-57520910 None:intergenic 45.0%
! CTGATCTACCTCCCTTTTTC+CGG - chr7_4:57520892-57520911 Msa1165590:three_prime_UTR 45.0%
GATTGATACCGGAAAAAGGG+AGG + chr7_4:57520903-57520922 None:intergenic 45.0%
CGTGATGACAACCTATGCTA+TGG - chr7_4:57521485-57521504 Msa1165590:intron 45.0%
CATGTGGGTGTGTTAGATGA+TGG - chr7_4:57521526-57521545 Msa1165590:CDS 45.0%
GAAGAGCTTGATAGGGAGAT+GGG - chr7_4:57521923-57521942 Msa1165590:CDS 45.0%
AAAGACCACTCTTGTGGAGT+TGG - chr7_4:57522033-57522052 Msa1165590:CDS 45.0%
AAGACCACTCTTGTGGAGTT+GGG - chr7_4:57522034-57522053 Msa1165590:CDS 45.0%
!! GTTGGGTAGGACTTTAGGAT+TGG - chr7_4:57522051-57522070 Msa1165590:CDS 45.0%
TGTGGTATACGCATAGCTCT+CGG + chr7_4:57522208-57522227 None:intergenic 45.0%
! AGAGGTCTTATCCTAGCAAG+TGG + chr7_4:57522238-57522257 None:intergenic 45.0%
GCTAGGATAAGACCTCTTGT+CGG - chr7_4:57522241-57522260 Msa1165590:intron 45.0%
TGTCGATGTTGTTGCAGATC+AGG - chr7_4:57522429-57522448 Msa1165590:CDS 45.0%
AGCCACTTATTGGGATTCAG+CGG + chr7_4:57522789-57522808 None:intergenic 45.0%
ATCAAGACTGAGATAGGCTC+GGG - chr7_4:57523002-57523021 Msa1165590:intron 45.0%
!! TTGTTCCATGAGTTGATCCC+GGG + chr7_4:57523541-57523560 None:intergenic 45.0%
TCTATCATAACCCTCTGCTC+TGG + chr7_4:57523711-57523730 None:intergenic 45.0%
TGGCATGAGTAGGTAGATCA+GGG + chr7_4:57524015-57524034 None:intergenic 45.0%
ATGGCATGAGTAGGTAGATC+AGG + chr7_4:57524016-57524035 None:intergenic 45.0%
GATCTACCTACTCATGCCAT+CGG - chr7_4:57524016-57524035 Msa1165590:CDS 45.0%
ATGCCATCGGTGATGAAAAG+CGG - chr7_4:57524029-57524048 Msa1165590:CDS 45.0%
GATGCTGGATAAAACTCAGG+AGG + chr7_4:57524166-57524185 None:intergenic 45.0%
ACGAGTCCAGGTTATGACTT+TGG - chr7_4:57524207-57524226 Msa1165590:CDS 45.0%
GAGATGCCAAAGTCATAACC+TGG + chr7_4:57524216-57524235 None:intergenic 45.0%
GGGCTCTTTCCTAGAAATGT+AGG + chr7_4:57524321-57524340 None:intergenic 45.0%
CCTGCACAAAGAAGGATGTT+TGG + chr7_4:57524439-57524458 None:intergenic 45.0%
CCAAACATCCTTCTTTGTGC+AGG - chr7_4:57524436-57524455 Msa1165590:CDS 45.0%
CAGGTTAAGGATTCTGGATG+TGG - chr7_4:57524455-57524474 Msa1165590:CDS 45.0%
! TCTGCTTGCAGCTTGATGAT+CGG + chr7_4:57524834-57524853 None:intergenic 45.0%
CTCCACTTCCACTATATGCT+TGG + chr7_4:57524859-57524878 None:intergenic 45.0%
! CAAGCATATAGTGGAAGTGG+AGG - chr7_4:57524857-57524876 Msa1165590:intron 45.0%
! CTAACCGACTCCCAAATCAA+TGG + chr7_4:57525234-57525253 None:intergenic 45.0%
! GAGTCGGTTAGTTCATCAGT+TGG - chr7_4:57525243-57525262 Msa1165590:five_prime_UTR 45.0%
!! TAAAAAAAAAAAAATAGTAT+AGG + chr7_4:57521142-57521161 None:intergenic 5.0%
CGGAGTGCGCCAAATAGATT+AGG + chr7_4:57520868-57520887 None:intergenic 50.0%
CGGAAAAAGGGAGGTAGATC+AGG + chr7_4:57520894-57520913 None:intergenic 50.0%
AGCACACGACACTTTAGCGA+TGG + chr7_4:57521810-57521829 None:intergenic 50.0%
! GCTCTTCCGCCTTGTTCTTA+AGG + chr7_4:57521910-57521929 None:intergenic 50.0%
ACAAGGCGGAAGAGCTTGAT+AGG - chr7_4:57521915-57521934 Msa1165590:CDS 50.0%
CAAGGCGGAAGAGCTTGATA+GGG - chr7_4:57521916-57521935 Msa1165590:CDS 50.0%
GGAAGAGCTTGATAGGGAGA+TGG - chr7_4:57521922-57521941 Msa1165590:CDS 50.0%
GTGGAGTTGGGTAGGACTTT+AGG - chr7_4:57522046-57522065 Msa1165590:CDS 50.0%
!! GGGTAGGACTTTAGGATTGG+AGG - chr7_4:57522054-57522073 Msa1165590:CDS 50.0%
GATTGGAGGAATGTGCACTG+TGG - chr7_4:57522068-57522087 Msa1165590:CDS 50.0%
CTGTGGATGCCATCAAGAAG+TGG - chr7_4:57522085-57522104 Msa1165590:CDS 50.0%
GTGGTATACGCATAGCTCTC+GGG + chr7_4:57522207-57522226 None:intergenic 50.0%
CTAGCAAGTGGACAAGTGTG+TGG + chr7_4:57522226-57522245 None:intergenic 50.0%
CACACACTTGTCCACTTGCT+AGG - chr7_4:57522224-57522243 Msa1165590:intron 50.0%
GGCACATATCTTCCGACAAG+AGG + chr7_4:57522256-57522275 None:intergenic 50.0%
TGTGCCACCTGAAGTTGTTG+CGG - chr7_4:57522270-57522289 Msa1165590:CDS 50.0%
CACCTGAAGTTGTTGCGGTT+CGG - chr7_4:57522275-57522294 Msa1165590:CDS 50.0%
ACCTGAAGTTGTTGCGGTTC+GGG - chr7_4:57522276-57522295 Msa1165590:CDS 50.0%
AAAGTGGCGAGACCATGAGT+TGG - chr7_4:57522402-57522421 Msa1165590:CDS 50.0%
CATCGACAAGCTCCAACTCA+TGG + chr7_4:57522417-57522436 None:intergenic 50.0%
CTCACATGCACCTCAGATGT+GGG - chr7_4:57523381-57523400 Msa1165590:intron 50.0%
TCACATGCACCTCAGATGTG+GGG - chr7_4:57523382-57523401 Msa1165590:intron 50.0%
CAATCATGTCCCCACATCTG+AGG + chr7_4:57523394-57523413 None:intergenic 50.0%
AAGGGCAACTGCTACCTGTA+TGG + chr7_4:57523484-57523503 None:intergenic 50.0%
CTCTCGCCGAGCTAAATCTA+AGG + chr7_4:57523571-57523590 None:intergenic 50.0%
! CTTAGATTTAGCTCGGCGAG+AGG - chr7_4:57523569-57523588 Msa1165590:intron 50.0%
! TGAACTGACTCCAGAGCAGA+GGG - chr7_4:57523698-57523717 Msa1165590:CDS 50.0%
! TGTTCTAGATCTGTCCCGAC+TGG - chr7_4:57523776-57523795 Msa1165590:CDS 50.0%
AAGGCTACCATCTTCCAGTC+GGG + chr7_4:57523793-57523812 None:intergenic 50.0%
CAAGGCTACCATCTTCCAGT+CGG + chr7_4:57523794-57523813 None:intergenic 50.0%
CCTCTCCCAAAACACCATGA+AGG + chr7_4:57523839-57523858 None:intergenic 50.0%
!!! CCTTCATGGTGTTTTGGGAG+AGG - chr7_4:57523836-57523855 Msa1165590:CDS 50.0%
GGCATGAGTAGGTAGATCAG+GGG + chr7_4:57524014-57524033 None:intergenic 50.0%
TCATCACCGATGGCATGAGT+AGG + chr7_4:57524025-57524044 None:intergenic 50.0%
!!! AAGCCGCTTTTCATCACCGA+TGG + chr7_4:57524035-57524054 None:intergenic 50.0%
CGCCAATCCTGTAAGGATTC+TGG + chr7_4:57524142-57524161 None:intergenic 50.0%
! GTTTGGGGTCAGTCATGAGA+TGG + chr7_4:57524422-57524441 None:intergenic 50.0%
GAACCACTGCTAGATCGAAC+AGG + chr7_4:57524539-57524558 None:intergenic 50.0%
GTTCGATCTAGCAGTGGTTC+AGG - chr7_4:57524539-57524558 Msa1165590:CDS 50.0%
TCTAGCAGTGGTTCAGGTCT+TGG - chr7_4:57524545-57524564 Msa1165590:CDS 50.0%
ATCTCATGGGTGGGCACATA+TGG - chr7_4:57524729-57524748 Msa1165590:intron 50.0%
CACATATGGATGGAGAGCGA+GGG - chr7_4:57524743-57524762 Msa1165590:intron 50.0%
! CTTGCAGCTTGATGATCGGA+TGG + chr7_4:57524830-57524849 None:intergenic 50.0%
GATCATCAAGCTGCAAGCAG+AGG - chr7_4:57524833-57524852 Msa1165590:intron 50.0%
AGCAGAGGCCAAGCATATAG+TGG - chr7_4:57524848-57524867 Msa1165590:intron 50.0%
! GGCCAAGCATATAGTGGAAG+TGG - chr7_4:57524854-57524873 Msa1165590:intron 50.0%
CCTACCCAACTCCACAAGAG+TGG + chr7_4:57522041-57522060 None:intergenic 55.0%
CCACTCTTGTGGAGTTGGGT+AGG - chr7_4:57522038-57522057 Msa1165590:CDS 55.0%
CGAACCGCAACAACTTCAGG+TGG + chr7_4:57522277-57522296 None:intergenic 55.0%
ACCCGAACCGCAACAACTTC+AGG + chr7_4:57522280-57522299 None:intergenic 55.0%
TGCATGTGGAGTATGCGCTG+AGG - chr7_4:57522763-57522782 Msa1165590:intron 55.0%
GGCCGCTGAATCCCAATAAG+TGG - chr7_4:57522784-57522803 Msa1165590:intron 55.0%
GTGGCTAAAAAAGGGAGGGC+AGG - chr7_4:57522803-57522822 Msa1165590:intron 55.0%
! AGGAGGCATGTGCAGGCAAA+GGG + chr7_4:57523193-57523212 None:intergenic 55.0%
! TAGGAGGCATGTGCAGGCAA+AGG + chr7_4:57523194-57523213 None:intergenic 55.0%
! TCGGATTAGGAGGCATGTGC+AGG + chr7_4:57523200-57523219 None:intergenic 55.0%
! CCACATCTGAGGTGCATGTG+AGG + chr7_4:57523383-57523402 None:intergenic 55.0%
CCTCACATGCACCTCAGATG+TGG - chr7_4:57523380-57523399 Msa1165590:intron 55.0%
! CTGAACTGACTCCAGAGCAG+AGG - chr7_4:57523697-57523716 Msa1165590:CDS 55.0%
GATCTGTCCCGACTGGAAGA+TGG - chr7_4:57523783-57523802 Msa1165590:CDS 55.0%
AGGAGGTCGCCAATCCTGTA+AGG + chr7_4:57524149-57524168 None:intergenic 55.0%
GGACCTGTTCGATCTAGCAG+TGG - chr7_4:57524533-57524552 Msa1165590:CDS 55.0%
CATGGGTGGGCACATATGGA+TGG - chr7_4:57524733-57524752 Msa1165590:intron 55.0%
GCACATATGGATGGAGAGCG+AGG - chr7_4:57524742-57524761 Msa1165590:intron 55.0%
GAGAGCGAGGGTCACGATAA+AGG - chr7_4:57524755-57524774 Msa1165590:intron 55.0%
AAGGGAGGTAGATCAGGCGG+CGG + chr7_4:57520888-57520907 None:intergenic 60.0%
AGCTCGGCGAGAGGCTGAAA+TGG - chr7_4:57523578-57523597 Msa1165590:intron 60.0%
TGGAGGAGTCCATGCGAGCC+CGG - chr7_4:57523520-57523539 Msa1165590:intron 65.0%
! GAGTTGATCCCGGGCTCGCA+TGG + chr7_4:57523532-57523551 None:intergenic 65.0%
GCGAGCCCGGGATCAACTCA+TGG - chr7_4:57523533-57523552 Msa1165590:intron 65.0%
GGAGGAGTCCATGCGAGCCC+GGG - chr7_4:57523521-57523540 Msa1165590:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57520731 57525375 57520731 ID=Msa1165590;Name=Msa1165590
chr7_4 mRNA 57520731 57525375 57520731 ID=Msa1165590-mRNA-1;Parent=Msa1165590;Name=Msa1165590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=206|1|1|1|0.8|0.66|6|420|635
chr7_4 exon 57520731 57521385 57520731 ID=Msa1165590-mRNA-1:exon:17449;Parent=Msa1165590-mRNA-1
chr7_4 exon 57521521 57521648 57521521 ID=Msa1165590-mRNA-1:exon:17448;Parent=Msa1165590-mRNA-1
chr7_4 exon 57521890 57522156 57521890 ID=Msa1165590-mRNA-1:exon:17447;Parent=Msa1165590-mRNA-1
chr7_4 exon 57522249 57522617 57522249 ID=Msa1165590-mRNA-1:exon:17446;Parent=Msa1165590-mRNA-1
chr7_4 exon 57523656 57524587 57523656 ID=Msa1165590-mRNA-1:exon:17445;Parent=Msa1165590-mRNA-1
chr7_4 exon 57525193 57525375 57525193 ID=Msa1165590-mRNA-1:exon:17444;Parent=Msa1165590-mRNA-1
chr7_4 five_prime_UTR 57525193 57525375 57525193 ID=Msa1165590-mRNA-1:five_prime_utr;Parent=Msa1165590-mRNA-1
chr7_4 five_prime_UTR 57524565 57524587 57524565 ID=Msa1165590-mRNA-1:five_prime_utr;Parent=Msa1165590-mRNA-1
chr7_4 CDS 57523656 57524564 57523656 ID=Msa1165590-mRNA-1:cds;Parent=Msa1165590-mRNA-1
chr7_4 CDS 57522249 57522617 57522249 ID=Msa1165590-mRNA-1:cds;Parent=Msa1165590-mRNA-1
chr7_4 CDS 57521890 57522156 57521890 ID=Msa1165590-mRNA-1:cds;Parent=Msa1165590-mRNA-1
chr7_4 CDS 57521521 57521648 57521521 ID=Msa1165590-mRNA-1:cds;Parent=Msa1165590-mRNA-1
chr7_4 CDS 57521151 57521385 57521151 ID=Msa1165590-mRNA-1:cds;Parent=Msa1165590-mRNA-1
chr7_4 three_prime_UTR 57520731 57521150 57520731 ID=Msa1165590-mRNA-1:three_prime_utr;Parent=Msa1165590-mRNA-1
Gene Sequence

>Msa1165590

ATGATGGAGTCTTGCGAGTGTATCGACACGCCTTATCCTCCAGATGAACTTCTTGTCAAGTATCAATACATCTCTGACGTTCTAATCGCACTTGCGTATTTCTCAATTCCTGTCGAACTCATTTATTTTGTTCAGAAATCTGCTTTCTTTCCATATAGATGGGTTCTTATGCAGTTTGGGGCTTTTATTGTTCTATGTGGAGCAACTCATTTTATAAATCTGTGGACATTCTCAGCTCACACGAAAGCTGTTGCTGTTGTAATGACCATCGCTAAAGTGTCGTGTGCTATTGTCTCATGTGCCACTGCACTTATGCTTGTTCATATTATTCCCGATCTGTTGAGTGTTAAAACCCGTGAGTTGTTCCTTAAGAACAAGGCGGAAGAGCTTGATAGGGAGATGGGACTTATTCTTACTCAGGAAGAAACCGGAAGACATGTGAGAATGTTGACTCATGAAATTAGGAGCACTCTTGATAGGCATACTATTCTAAAGACCACTCTTGTGGAGTTGGGTAGGACTTTAGGATTGGAGGAATGTGCACTGTGGATGCCATCAAGAAGTGGTTTGAATCTACAACTTTCTCATACTTTAACTTATCATGTACAAGTTGGTTCTACTGTGCCAACAAACCTTCCTATTGTCAATGAAGTCTTCAGTAACCCGAGAGCTATGCGTATACCACACACTTGTCCACTTGCTAGGATAAGACCTCTTGTCGGAAGATATGTGCCACCTGAAGTTGTTGCGGTTCGGGTGCCGCTTCTACATTTGTCAAATTTCCAAATTAATGATTGGCCTGAGCTTTCGGCAAAAAGTTATGCAATTATGGTTCTTATTCTCCCTACTGATAGTGCTAGAAAGTGGCGAGACCATGAGTTGGAGCTTGTCGATGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCCATGCGAGCCCGGGATCAACTCATGGAACAAAACGTTGCCTTAGATTTAGCTCGGCGAGAGGCTGAAATGGCAATTCATGCTCGCAATGATTTCCTTGCAGTCATGAATCATGAAATGAGAACACCGATGCATGCAATTATAGCATTGTCATCACTTCTTTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACTGTATTGAAGAGTAGTAATGTTTTGGCAGCACTTATCAATGATGTTCTAGATCTGTCCCGACTGGAAGATGGTAGCCTTGAATTAGAAATGGCAAAAATCAACCTTCATGGTGTTTTGGGAGAGGTCATTGAACTGATTAAGCCTATAGCATCTGTGAAAAAACTACCCATTACTTTAATTCTTGCCCCTGATCTACCTACTCATGCCATCGGTGATGAAAAGCGGCTTATGCAGACACTTTTGAATGTTGTGGGCAATGCTGTCAAATATACTAAGGAGGGCTATGTTTCTATAAGAGCTTCTGTTGCAAAACCAGAATCCTTACAGGATTGGCGACCTCCTGAGTTTTATCCAGCATCAAGTGATGGTCATTTCTATATACGAGTCCAGGTTAAGGATTCTGGATGTGGCATTCTACCACAAGATATTCCACATCTCTTTACCAAGTTTACTCAGTCTCAGAGTGGACCTGTTCGATCTAGCAGTGGTTCAGGTCTTGGACTAGCTATTTGTAAAAGATTTGTAAATCTCATGGGTGGGCACATATGGATGGAGAGCGAGGGTCACGATAAAGGAAGCACAGCTACATTTGTAGTCAAACTTGGGATTTGTGGCAATGCAGATCCATCCGATCATCAAGCTGCAAGCAGAGGCCAAGCATATAGTGGAAGTGGAGGCCTTGCTAGATTTAAGCACTTACTCAATGATGACGACATAGGTTTTTCTAATAGACGCAATCAAAGAAGTTTCTGA
Protein sequence

>Msa1165590

MMESCECIDTPYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSAHTKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVPTNLPIVNEVFSNPRAMRIPHTCPLARIRPLVGRYVPPEVVAVRVPLLHLSNFQINDWPELSAKSYAIMVLILPTDSARKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMAKINLHGVLGEVIELIKPIASVKKLPITLILAPDLPTHAIGDEKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFTQSQSGPVRSSSGSGLGLAICKRFVNLMGGHIWMESEGHDKGSTATFVVKLGICGNADPSDHQAASRGQAYSGSGGLARFKHLLNDDDIGFSNRRNQRSF*