AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748360 MtrunA17_Chr7g0269631 99.843 635 1 0 1 635 1 635 0.0 1310
Msa0748360 MtrunA17_Chr4g0013831 73.194 623 167 0 1 623 1 623 0.0 942
Msa0748360 MtrunA17_Chr1g0186431 42.007 588 325 9 5 586 29 606 1.37e-140 427
Msa0748360 MtrunA17_Chr1g0168161 40.210 572 323 11 5 567 28 589 7.65e-128 394
Msa0748360 MtrunA17_Chr7g0274831 38.035 631 325 15 5 598 34 635 7.75e-122 379
Msa0748360 MtrunA17_Chr1g0190021 38.088 638 358 15 3 623 26 643 2.88e-120 375
Msa0748360 MtrunA17_Chr5g0405701 33.721 258 145 4 334 567 499 754 9.93e-36 144
Msa0748360 MtrunA17_Chr3g0136601 32.258 341 179 11 300 596 331 663 1.25e-33 137
Msa0748360 MtrunA17_Chr8g0371601 32.031 256 152 3 334 567 461 716 5.56e-33 135
Msa0748360 MtrunA17_Chr8g0377481 30.357 280 162 4 335 582 383 661 2.13e-32 134
Msa0748360 MtrunA17_Chr3g0122391 28.333 300 175 5 335 598 431 726 8.11e-32 132
Msa0748360 MtrunA17_Chr5g0447641 30.389 283 158 5 338 582 611 892 6.59e-29 123
Msa0748360 MtrunA17_Chr8g0392301 30.820 305 156 6 338 588 377 680 7.56e-29 122
Msa0748360 MtrunA17_Chr1g0150511 32.973 185 116 4 300 483 337 514 2.42e-20 95.9
Msa0748360 MtrunA17_Chr1g0150511 38.393 112 64 3 484 592 585 694 8.15e-12 68.6
Msa0748360 MtrunA17_Chr1g0194741 26.846 298 160 11 312 563 367 652 2.03e-15 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748360 AT2G40940.1 76.962 599 138 0 2 600 1 599 0.0 935
Msa0748360 AT1G66340.1 71.383 622 174 1 2 623 1 618 0.0 900
Msa0748360 AT3G23150.2 40.555 577 306 14 5 562 32 590 1.41e-120 371
Msa0748360 AT3G23150.1 40.722 582 308 14 5 567 32 595 7.96e-120 374
Msa0748360 AT3G04580.2 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa0748360 AT3G04580.1 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa0748360 AT1G04310.1 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa0748360 AT1G04310.2 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa0748360 AT5G10720.1 32.500 320 186 8 323 619 339 651 9.92e-38 150
Msa0748360 AT2G17820.1 32.246 276 161 5 314 567 472 743 4.04e-35 142
Msa0748360 AT1G27320.1 29.885 348 185 7 266 582 398 717 6.85e-35 142
Msa0748360 AT5G35750.1 30.405 296 165 7 335 593 578 869 5.64e-31 130
Msa0748360 AT2G01830.5 29.545 308 165 5 338 597 455 758 3.00e-30 127
Msa0748360 AT2G01830.1 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0748360 AT2G01830.4 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0748360 AT2G01830.6 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0748360 AT2G01830.3 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0748360 AT2G01830.2 29.545 308 165 5 338 597 466 769 3.58e-30 127
Msa0748360 AT2G47430.1 27.491 291 167 10 334 586 385 669 1.60e-16 84.3
Msa0748360 AT4G16250.1 23.577 246 161 8 326 567 914 1136 6.27e-11 66.2

Find 173 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCACATGCTGCTATTT+TGG 0.127774 5_2:-1514730 Msa0748360:CDS
GATATAAAGATATGCAATTT+TGG 0.178667 5_2:+1513264 None:intergenic
GCTCAGGCCAATCATTAATT+TGG 0.179813 5_2:+1515908 None:intergenic
TTTGTGCAGGTTAAGGATTC+TGG 0.190806 5_2:-1513781 Msa0748360:intron
AATCAACCTTCATGGTGTTT+TGG 0.215357 5_2:-1514400 Msa0748360:CDS
CTGCTTTCTTTCCATATAGA+TGG 0.223591 5_2:-1516551 Msa0748360:CDS
GTGGAGTTGGGTAGGACTTT+AGG 0.238818 5_2:-1516186 Msa0748360:CDS
GATGGGTTCTTATGCAGTTT+GGG 0.252158 5_2:-1516533 Msa0748360:CDS
AGCATTGTCATCACTTCTTT+TGG 0.253771 5_2:-1514559 Msa0748360:CDS
CGCCAATCCTGTAAGGATTC+TGG 0.273695 5_2:+1514091 None:intergenic
TTGGACTAGCTATTTGTAAA+AGG 0.274567 5_2:-1513666 Msa0748360:intron
CGTTAGTTCAACCATTGATT+TGG 0.279070 5_2:-1513009 Msa0748360:three_prime_UTR
AGTGGATTGATACCGGAAAA+AGG 0.289080 5_2:+1517332 None:intergenic
GCTCTTCCGCCTTGTTCTTA+AGG 0.299367 5_2:+1516325 None:intergenic
AGATGGGTTCTTATGCAGTT+TGG 0.302430 5_2:-1516534 Msa0748360:CDS
ACAAGGCGGAAGAGCTTGAT+AGG 0.308682 5_2:-1516317 Msa0748360:CDS
TGCAAAACCAGAATCCTTAC+AGG 0.315260 5_2:-1514098 Msa0748360:CDS
CAATGAAACTACAATATAAT+CGG 0.315913 5_2:+1512956 None:intergenic
TGCATAAGAACCCATCTATA+TGG 0.316824 5_2:+1516540 None:intergenic
AAGTCTCCGCCTAATCTATT+TGG 0.318508 5_2:-1517380 Msa0748360:five_prime_UTR
CAACATTCTCACATGTCTTC+CGG 0.319637 5_2:+1516263 None:intergenic
ATCTCATGGGTGGGCACATA+TGG 0.329280 5_2:-1513501 Msa0748360:CDS
TAATGATTGGCCTGAGCTTT+CGG 0.339005 5_2:-1515902 Msa0748360:CDS
CACCTGAAGTTGTTGCGGTT+CGG 0.344532 5_2:-1515957 Msa0748360:CDS
CAAATTTCCAAATTAATGAT+TGG 0.349017 5_2:-1515915 Msa0748360:CDS
TCTAGCAGTGGTTCAGGTCT+TGG 0.350863 5_2:-1513685 Msa0748360:CDS
TTCATTGAACCGAGTTAAAC+TGG 0.353085 5_2:-1512940 Msa0748360:three_prime_UTR
ATTGAAGAGTAGTAATGTTT+TGG 0.359573 5_2:-1514493 Msa0748360:CDS
CTGAAGACTTCATTGACAAT+AGG 0.366052 5_2:+1516054 None:intergenic
TGAACCACAATTGGTTCAAC+TGG 0.370506 5_2:-1512916 Msa0748360:three_prime_UTR
ATAGAAGACTTCAAGTATAA+AGG 0.374332 5_2:+1517499 None:intergenic
GAATGTTGACTCATGAAATT+AGG 0.375510 5_2:-1516248 Msa0748360:CDS
GAGAGCGAGGGTCACGATAA+AGG 0.377013 5_2:-1513475 Msa0748360:CDS
GCTGTTTGCAGCTATAGATT+AGG 0.378023 5_2:-1513185 Msa0748360:three_prime_UTR
ACCTGAAGTTGTTGCGGTTC+GGG 0.378789 5_2:-1515956 Msa0748360:CDS
TGTCGATGTTGTTGCAGATC+AGG 0.380378 5_2:-1515803 Msa0748360:intron
GTTAGTTCAACCATTGATTT+GGG 0.382348 5_2:-1513008 Msa0748360:three_prime_UTR
CTCTCGCCGAGCTAAATCTA+AGG 0.393829 5_2:+1514662 None:intergenic
TAAACTGGTTGAACCACAAT+TGG 0.408863 5_2:-1512925 Msa0748360:three_prime_UTR
ATGGCATGAGTAGGTAGATC+AGG 0.413426 5_2:+1514217 None:intergenic
AGATTCAAACCACTTCTTGA+TGG 0.415200 5_2:+1516138 None:intergenic
GTTCGATCTAGCAGTGGTTC+AGG 0.425531 5_2:-1513691 Msa0748360:CDS
CTCCACTTCCACTATATGCT+TGG 0.434484 5_2:+1513374 None:intergenic
ATTCATTGCTTAATATAACT+TGG 0.435679 5_2:-1513072 Msa0748360:three_prime_UTR
AAATTAGGAGCACTCTTGAT+AGG 0.435699 5_2:-1516233 Msa0748360:CDS
GGGGCAAGAATTAAAGTAAT+GGG 0.436802 5_2:+1514238 None:intergenic
GAGTTGATCCCGGGCTCGCA+TGG 0.439303 5_2:+1514701 None:intergenic
TACTTGACAAGAAGTTCATC+TGG 0.439756 5_2:+1516651 None:intergenic
AGCTCGGCGAGAGGCTGAAA+TGG 0.447274 5_2:-1514652 Msa0748360:CDS
AATGAAACTACAATATAATC+GGG 0.448185 5_2:+1512957 None:intergenic
ATTGATTGATATTCATATGA+AGG 0.448953 5_2:+1517410 None:intergenic
GCTACATTTGTAGTCAAACT+TGG 0.452125 5_2:-1513445 Msa0748360:CDS
GGGTAGGACTTTAGGATTGG+AGG 0.452722 5_2:-1516178 Msa0748360:CDS
ACCCGAACCGCAACAACTTC+AGG 0.453206 5_2:+1515955 None:intergenic
GGCCAAGCATATAGTGGAAG+TGG 0.455936 5_2:-1513376 Msa0748360:CDS
ATTCAGATTTGTAAATCTCA+TGG 0.457675 5_2:-1513515 Msa0748360:intron
ATTCTTACTCAGGAAGAAAC+CGG 0.461381 5_2:-1516282 Msa0748360:CDS
CCAAAATAGCAGCATGTGAA+AGG 0.461533 5_2:+1514730 None:intergenic
TTGTTCCATGAGTTGATCCC+GGG 0.464658 5_2:+1514692 None:intergenic
AGCAGAGGCCAAGCATATAG+TGG 0.467264 5_2:-1513382 Msa0748360:CDS
AGAAGTTCATCTGGAGGATA+AGG 0.468819 5_2:+1516660 None:intergenic
TTGACAATAGGAAGGTTTGT+TGG 0.470136 5_2:+1516066 None:intergenic
AAAGACCACTCTTGTGGAGT+TGG 0.471472 5_2:-1516199 Msa0748360:CDS
AAATCAATGGTTGAACTAAC+GGG 0.472002 5_2:+1513011 None:intergenic
TGGTAGCCTTGAATTAGAAA+TGG 0.472836 5_2:-1514427 Msa0748360:CDS
GTAGTCAAACTTGGGATTTG+TGG 0.473180 5_2:-1513436 Msa0748360:CDS
TGCTTTCTTTCCATATAGAT+GGG 0.474314 5_2:-1516550 Msa0748360:CDS
TTTGTTCCATGAGTTGATCC+CGG 0.480126 5_2:+1514691 None:intergenic
AAGACCACTCTTGTGGAGTT+GGG 0.480183 5_2:-1516198 Msa0748360:CDS
CAAATCAATGGTTGAACTAA+CGG 0.485230 5_2:+1513010 None:intergenic
ACAAAATAAATGAGTTCGAC+AGG 0.487975 5_2:+1516582 None:intergenic
GTTGGGTAGGACTTTAGGAT+TGG 0.493614 5_2:-1516181 Msa0748360:CDS
TGGAGGAGTCCATGCGAGCC+CGG 0.494071 5_2:-1514710 Msa0748360:CDS
TGTGGTATACGCATAGCTCT+CGG 0.503245 5_2:+1516027 None:intergenic
TCAACCATTGATTTGGGAGT+CGG 0.504463 5_2:-1513002 Msa0748360:three_prime_UTR
TCTATCATAACCCTCTGCTC+TGG 0.509698 5_2:+1514522 None:intergenic
GAACCACTGCTAGATCGAAC+AGG 0.510532 5_2:+1513694 None:intergenic
GGAGGAGTCCATGCGAGCCC+GGG 0.516805 5_2:-1514709 Msa0748360:CDS
GTTATGTTTGTGTTGTGAGT+GGG 0.520905 5_2:+1517472 None:intergenic
GTTCTTAAGGAACAACTCAC+GGG 0.520997 5_2:+1516338 None:intergenic
AACCAGAATCCTTACAGGAT+TGG 0.521860 5_2:-1514093 Msa0748360:CDS
CGGAGTGCGCCAAATAGATT+AGG 0.523903 5_2:+1517371 None:intergenic
TTCAGATTTGTAAATCTCAT+GGG 0.524035 5_2:-1513514 Msa0748360:intron
TCTGCTTGCAGCTTGATGAT+CGG 0.525516 5_2:+1513399 None:intergenic
AGGAGGTCGCCAATCCTGTA+AGG 0.525729 5_2:+1514084 None:intergenic
TATAACTAGTTGATACGATA+GGG 0.528891 5_2:+1513117 None:intergenic
AAATGACCATCACTTGATGC+TGG 0.529879 5_2:+1514052 None:intergenic
GGAAGAGCTTGATAGGGAGA+TGG 0.530026 5_2:-1516310 Msa0748360:CDS
CTACATTTGTAGTCAAACTT+GGG 0.530312 5_2:-1513444 Msa0748360:CDS
GTGGTATACGCATAGCTCTC+GGG 0.531017 5_2:+1516028 None:intergenic
TGTTCTTAAGGAACAACTCA+CGG 0.533686 5_2:+1516337 None:intergenic
CTGAACTGACTCCAGAGCAG+AGG 0.535510 5_2:-1514533 Msa0748360:CDS
AAAACCAGTTGAACCAATTG+TGG 0.536954 5_2:+1512912 None:intergenic
GATGGGACTTATTCTTACTC+AGG 0.538781 5_2:-1516292 Msa0748360:CDS
CATGTGGGTGTGTTAGATGA+TGG 0.539856 5_2:-1516706 Msa0748360:exon
ATGGGTTCTTATGCAGTTTG+GGG 0.539955 5_2:-1516532 Msa0748360:CDS
TTAACTTATCATGTACAAGT+TGG 0.540061 5_2:-1516099 Msa0748360:CDS
ATCTTTATATCAATGTCGAC+TGG 0.540215 5_2:-1513252 Msa0748360:three_prime_UTR
GATCTGTCCCGACTGGAAGA+TGG 0.542916 5_2:-1514447 Msa0748360:CDS
TTACTCAATGATGACGACAT+AGG 0.543430 5_2:-1513331 Msa0748360:CDS
AGGGGCAAGAATTAAAGTAA+TGG 0.544261 5_2:+1514237 None:intergenic
ACTCTGAGACTGAGTAAACT+TGG 0.544636 5_2:+1513720 None:intergenic
TCATTTCTATATACGAGTCC+AGG 0.548157 5_2:-1514035 Msa0748360:intron
GAAGAGCTTGATAGGGAGAT+GGG 0.548570 5_2:-1516309 Msa0748360:CDS
CAATGCTGTCAAATATACTA+AGG 0.548729 5_2:-1514149 Msa0748360:CDS
CATGGGTGGGCACATATGGA+TGG 0.549664 5_2:-1513497 Msa0748360:CDS
GCGAGCCCGGGATCAACTCA+TGG 0.550447 5_2:-1514697 Msa0748360:CDS
GTATAACTAGTTGATACGAT+AGG 0.554353 5_2:+1513116 None:intergenic
AAGGCTACCATCTTCCAGTC+GGG 0.554665 5_2:+1514440 None:intergenic
CAAAATAGCAGCATGTGAAA+GGG 0.558668 5_2:+1514731 None:intergenic
CACTTTCTAGCACTATCAGT+AGG 0.560837 5_2:+1515847 None:intergenic
CTTGATGCTGGATAAAACTC+AGG 0.561674 5_2:+1514064 None:intergenic
CAGGTTAAGGATTCTGGATG+TGG 0.561926 5_2:-1513775 Msa0748360:CDS
GAGTCGGTTAGTTCATCAGT+TGG 0.566578 5_2:-1512986 Msa0748360:three_prime_UTR
CTTGCAGCTTGATGATCGGA+TGG 0.567335 5_2:+1513403 None:intergenic
CTAACCGACTCCCAAATCAA+TGG 0.568057 5_2:+1512998 None:intergenic
CAAGGCGGAAGAGCTTGATA+GGG 0.569408 5_2:-1516316 Msa0748360:CDS
CATCGACAAGCTCCAACTCA+TGG 0.570916 5_2:+1515818 None:intergenic
ATCTAACACACCCACATGAA+AGG 0.572240 5_2:+1516711 None:intergenic
TGGCATGAGTAGGTAGATCA+GGG 0.573826 5_2:+1514218 None:intergenic
AGATTTGTAAATCTCATGGG+TGG 0.574861 5_2:-1513511 Msa0748360:CDS
ACGTTGCCTTAGATTTAGCT+CGG 0.574999 5_2:-1514668 Msa0748360:CDS
TGCTGTCAAATATACTAAGG+AGG 0.577420 5_2:-1514146 Msa0748360:CDS
GCTGTCAAATATACTAAGGA+GGG 0.577474 5_2:-1514145 Msa0748360:CDS
TATTCTAAAGACCACTCTTG+TGG 0.580698 5_2:-1516205 Msa0748360:CDS
GTAAACTTGGTAAAGAGATG+TGG 0.583173 5_2:+1513733 None:intergenic
CTACTGATAGTGCTAGAAAG+TGG 0.585604 5_2:-1515846 Msa0748360:CDS
GCTAGGATAAGACCTCTTGT+CGG 0.586111 5_2:-1515991 Msa0748360:CDS
TGTTCTAGATCTGTCCCGAC+TGG 0.586169 5_2:-1514454 Msa0748360:CDS
CACACACTTGTCCACTTGCT+AGG 0.588144 5_2:-1516008 Msa0748360:CDS
TTTCATGATTCATGACTGCA+AGG 0.589191 5_2:+1514607 None:intergenic
CCACTCTTGTGGAGTTGGGT+AGG 0.594476 5_2:-1516194 Msa0748360:CDS
GATTTGTAAATCTCATGGGT+GGG 0.596709 5_2:-1513510 Msa0748360:CDS
ACTTTCTAGCACTATCAGTA+GGG 0.597780 5_2:+1515848 None:intergenic
AGACTTCATTGACAATAGGA+AGG 0.597850 5_2:+1516058 None:intergenic
GTAAGTGCTTAAATCTAGCA+AGG 0.598885 5_2:+1513350 None:intergenic
CAAGGCTACCATCTTCCAGT+CGG 0.599285 5_2:+1514439 None:intergenic
TGAACTGACTCCAGAGCAGA+GGG 0.605152 5_2:-1514532 Msa0748360:CDS
TGAGTTGTTCCTTAAGAACA+AGG 0.610418 5_2:-1516334 Msa0748360:CDS
GCACATATGGATGGAGAGCG+AGG 0.610844 5_2:-1513488 Msa0748360:CDS
GGCACATATCTTCCGACAAG+AGG 0.613814 5_2:+1515979 None:intergenic
AAGAGATGTGGAATATCTTG+TGG 0.615014 5_2:+1513745 None:intergenic
GTGGTTCAACCAGTTTAACT+CGG 0.615420 5_2:+1512931 None:intergenic
AGAGGTCTTATCCTAGCAAG+TGG 0.615685 5_2:+1515997 None:intergenic
TCATCACCGATGGCATGAGT+AGG 0.616501 5_2:+1514208 None:intergenic
TGTTATGTTTGTGTTGTGAG+TGG 0.617981 5_2:+1517471 None:intergenic
CTTAGATTTAGCTCGGCGAG+AGG 0.619358 5_2:-1514661 Msa0748360:CDS
AGCACACGACACTTTAGCGA+TGG 0.621416 5_2:+1516425 None:intergenic
AAAGTGGCGAGACCATGAGT+TGG 0.625466 5_2:-1515830 Msa0748360:CDS
AAATTTGACAAATGTAGAAG+CGG 0.631499 5_2:+1515931 None:intergenic
GATCATCAAGCTGCAAGCAG+AGG 0.631663 5_2:-1513397 Msa0748360:CDS
CAAGCATATAGTGGAAGTGG+AGG 0.635632 5_2:-1513373 Msa0748360:CDS
ATGCCATCGGTGATGAAAAG+CGG 0.635694 5_2:-1514201 Msa0748360:CDS
AAGGGAGGTAGATCAGGCGG+CGG 0.636261 5_2:+1517351 None:intergenic
TGTGCCACCTGAAGTTGTTG+CGG 0.636371 5_2:-1515962 Msa0748360:CDS
ATGAACAAGCATAAGTGCAG+TGG 0.643228 5_2:+1516389 None:intergenic
CCTACCCAACTCCACAAGAG+TGG 0.646184 5_2:+1516194 None:intergenic
GATCTACCTACTCATGCCAT+CGG 0.647848 5_2:-1514214 Msa0748360:CDS
CCTCTCCCAAAACACCATGA+AGG 0.651300 5_2:+1514394 None:intergenic
CACATATGGATGGAGAGCGA+GGG 0.654671 5_2:-1513487 Msa0748360:CDS
GGACCTGTTCGATCTAGCAG+TGG 0.657911 5_2:-1513697 Msa0748360:CDS
CGAACCGCAACAACTTCAGG+TGG 0.664993 5_2:+1515958 None:intergenic
CTGTGGATGCCATCAAGAAG+TGG 0.665478 5_2:-1516147 Msa0748360:CDS
AGTGCGCCAAATAGATTAGG+CGG 0.682072 5_2:+1517374 None:intergenic
TTGACAAGAAGTTCATCTGG+AGG 0.684589 5_2:+1516654 None:intergenic
GATGCTGGATAAAACTCAGG+AGG 0.685050 5_2:+1514067 None:intergenic
CTAGCAAGTGGACAAGTGTG+TGG 0.685475 5_2:+1516009 None:intergenic
AATGCTATAATTGCATGCAT+CGG 0.690508 5_2:+1514576 None:intergenic
GGCATGAGTAGGTAGATCAG+GGG 0.696928 5_2:+1514219 None:intergenic
ATGAAACTACAATATAATCG+GGG 0.698950 5_2:+1512958 None:intergenic
AAGTTTACTCAGTCTCAGAG+TGG 0.708425 5_2:-1513718 Msa0748360:CDS
GTTGTTCCTTAAGAACAAGG+CGG 0.762407 5_2:-1516331 Msa0748360:CDS
GATTGGAGGAATGTGCACTG+TGG 0.783064 5_2:-1516164 Msa0748360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTCTTTTATTTTAT+TGG - chr5_2:1514614-1514633 Msa0748360:CDS 10.0%
!! AGTATATTAAATAGTAGTAT+TGG + chr5_2:1513258-1513277 None:intergenic 15.0%
!! AAGAAGAAGAAAAAGAAAAA+GGG + chr5_2:1512955-1512974 None:intergenic 20.0%
!! ATTGATTGATATTCATATGA+AGG + chr5_2:1512983-1513002 None:intergenic 20.0%
!! AAAAATATATATAGAGAGAG+TGG + chr5_2:1513079-1513098 None:intergenic 20.0%
!!! TAAATAGTAGTATTGGATAA+TGG + chr5_2:1513251-1513270 None:intergenic 20.0%
!! CAAATTTCCAAATTAATGAT+TGG - chr5_2:1514475-1514494 Msa0748360:CDS 20.0%
!! TACGGAATAAAAAATATTCA+GGG + chr5_2:1514652-1514671 None:intergenic 20.0%
!! ATACGGAATAAAAAATATTC+AGG + chr5_2:1514653-1514672 None:intergenic 20.0%
!! AATAGTTGAAAATTAGGAAA+TGG - chr5_2:1514797-1514816 Msa0748360:intron 20.0%
!! GTATTAAATACAAATATCAC+AGG + chr5_2:1515005-1515024 None:intergenic 20.0%
!!! AAAGTTTCAGGTATTTAATT+TGG + chr5_2:1515388-1515407 None:intergenic 20.0%
!!! AAACTTTTCATTCAATTGTA+TGG - chr5_2:1515401-1515420 Msa0748360:intron 20.0%
!! AATTTCAAACACAGTTAATA+TGG + chr5_2:1515463-1515482 None:intergenic 20.0%
!! AATTCAATCACATTAACATA+TGG + chr5_2:1516417-1516436 None:intergenic 20.0%
!! TTAATATGCATTTCACATAA+GGG + chr5_2:1516799-1516818 None:intergenic 20.0%
!!! GATATAAAGATATGCAATTT+TGG + chr5_2:1517129-1517148 None:intergenic 20.0%
!! ATTCATTGCTTAATATAACT+TGG - chr5_2:1517318-1517337 Msa0748360:intron 20.0%
!!! TTAGGCTATGTTTTTAAAAT+CGG - chr5_2:1517350-1517369 Msa0748360:five_prime_UTR 20.0%
!! AATGAAACTACAATATAATC+GGG + chr5_2:1517436-1517455 None:intergenic 20.0%
!! CAATGAAACTACAATATAAT+CGG + chr5_2:1517437-1517456 None:intergenic 20.0%
! ATAGAAGACTTCAAGTATAA+AGG + chr5_2:1512894-1512913 None:intergenic 25.0%
! GAAGAAGAAGAAAAAGAAAA+AGG + chr5_2:1512956-1512975 None:intergenic 25.0%
!!! AGCTACTGTTTTTTCTTTTT+TGG - chr5_2:1513435-1513454 Msa0748360:CDS 25.0%
!! CAACTCATTTTATAAATCTG+TGG - chr5_2:1513902-1513921 Msa0748360:intron 25.0%
! TTAACTTATCATGTACAAGT+TGG - chr5_2:1514291-1514310 Msa0748360:intron 25.0%
! AAATTTGACAAATGTAGAAG+CGG + chr5_2:1514462-1514481 None:intergenic 25.0%
! AATAGAAAACAACGGAAATA+CGG + chr5_2:1514670-1514689 None:intergenic 25.0%
! AGAAAAGGAATAGAAAACAA+CGG + chr5_2:1514678-1514697 None:intergenic 25.0%
! GTTTAAGCAATCAAAAGAAA+AGG + chr5_2:1514693-1514712 None:intergenic 25.0%
! GCATAGAATAGTTGAAAATT+AGG - chr5_2:1514791-1514810 Msa0748360:intron 25.0%
! AAATAACTATAAAGCCCAAA+TGG + chr5_2:1514837-1514856 None:intergenic 25.0%
! CTTAAGTAAAGAACCATATT+AGG - chr5_2:1514898-1514917 Msa0748360:intron 25.0%
! ACTAAATTTAAGAACGAGAT+TGG - chr5_2:1515191-1515210 Msa0748360:intron 25.0%
! AAATTTACAACAAATGTGTG+TGG - chr5_2:1515303-1515322 Msa0748360:intron 25.0%
! AATTTACAACAAATGTGTGT+GGG - chr5_2:1515304-1515323 Msa0748360:intron 25.0%
! GAATAAAACACTTAAAAGTC+AGG + chr5_2:1515331-1515350 None:intergenic 25.0%
!!! GGTATTTAATTTGGTCTTTT+CGG + chr5_2:1515379-1515398 None:intergenic 25.0%
! ACAATTGAATGAAAAGTTTC+AGG + chr5_2:1515400-1515419 None:intergenic 25.0%
!! ATTGAAGAGTAGTAATGTTT+TGG - chr5_2:1515897-1515916 Msa0748360:CDS 25.0%
!!! TTTTTGCCATTTCTAATTCA+AGG + chr5_2:1515972-1515991 None:intergenic 25.0%
! TGTTAATGTGATTGAATTCT+TGG - chr5_2:1516419-1516438 Msa0748360:CDS 25.0%
! GTTAATGTGATTGAATTCTT+GGG - chr5_2:1516420-1516439 Msa0748360:CDS 25.0%
! AAGTCGATAACATAATGAAA+AGG + chr5_2:1516517-1516536 None:intergenic 25.0%
! CAACTGTTAGAAATTAATCT+AGG - chr5_2:1516547-1516566 Msa0748360:CDS 25.0%
! ATTTCACATAAGGGTAATAA+TGG + chr5_2:1516790-1516809 None:intergenic 25.0%
! GTTAATATGCATTTCACATA+AGG + chr5_2:1516800-1516819 None:intergenic 25.0%
! ATTCAGATTTGTAAATCTCA+TGG - chr5_2:1516875-1516894 Msa0748360:intron 25.0%
! TTCAGATTTGTAAATCTCAT+GGG - chr5_2:1516876-1516895 Msa0748360:intron 25.0%
!! TATAACTAGTTGATACGATA+GGG + chr5_2:1517276-1517295 None:intergenic 25.0%
! ATGAAACTACAATATAATCG+GGG + chr5_2:1517435-1517454 None:intergenic 25.0%
CTAACATGAGCATTATTGAA+TGG + chr5_2:1513118-1513137 None:intergenic 30.0%
ACATAAATAAACCCAATCTG+AGG + chr5_2:1513479-1513498 None:intergenic 30.0%
!!! GTTCTTGTTGATTTTGAACT+TGG - chr5_2:1513534-1513553 Msa0748360:intron 30.0%
! TTTTACAGATCCTTTCATGT+GGG - chr5_2:1513669-1513688 Msa0748360:CDS 30.0%
ACAAAATAAATGAGTTCGAC+AGG + chr5_2:1513811-1513830 None:intergenic 30.0%
TGCTTTCTTTCCATATAGAT+GGG - chr5_2:1513840-1513859 Msa0748360:intron 30.0%
!! GAATGTTGACTCATGAAATT+AGG - chr5_2:1514142-1514161 Msa0748360:CDS 30.0%
GGCAAAAAGTTATGCAATTA+TGG - chr5_2:1514509-1514528 Msa0748360:CDS 30.0%
!! TAGTTATTTCTCAACCATCA+AGG - chr5_2:1514848-1514867 Msa0748360:intron 30.0%
GAAAAGAAAACGACATAAGA+TGG + chr5_2:1515076-1515095 None:intergenic 30.0%
! AAATCAAAATTAGACTGGCT+CGG + chr5_2:1515113-1515132 None:intergenic 30.0%
!!! AGCCAGTCTAATTTTGATTT+TGG - chr5_2:1515113-1515132 Msa0748360:intron 30.0%
! TTTTGGCCATTGAAGATATA+TGG - chr5_2:1515130-1515149 Msa0748360:intron 30.0%
TAAGAACGAGATTGGAAAAA+TGG - chr5_2:1515199-1515218 Msa0748360:intron 30.0%
AAGAACGAGATTGGAAAAAT+GGG - chr5_2:1515200-1515219 Msa0748360:intron 30.0%
!! TAATTTGGTCTTTTCGGATT+AGG + chr5_2:1515373-1515392 None:intergenic 30.0%
! CATTCAATTGTATGGCTTTT+AGG - chr5_2:1515409-1515428 Msa0748360:intron 30.0%
ATATCAGCACTAGAAAATGT+TGG + chr5_2:1515509-1515528 None:intergenic 30.0%
!!! AACATTTTCTAGTGCTGATA+TGG - chr5_2:1515508-1515527 Msa0748360:intron 30.0%
! AACTAAATGGATTCAGCATA+CGG + chr5_2:1515620-1515639 None:intergenic 30.0%
! AATCCATTTAGTTTCCATAC+AGG - chr5_2:1515627-1515646 Msa0748360:intron 30.0%
AATGCTATAATTGCATGCAT+CGG + chr5_2:1515817-1515836 None:intergenic 30.0%
CAATACATAAATGCTGTTCA+TGG + chr5_2:1516070-1516089 None:intergenic 30.0%
! TGCTTTTCTATTGTTAATGC+AGG - chr5_2:1516088-1516107 Msa0748360:CDS 30.0%
!!! AGTTTTTTCACAGATGCTAT+AGG + chr5_2:1516131-1516150 None:intergenic 30.0%
CAATGCTGTCAAATATACTA+AGG - chr5_2:1516241-1516260 Msa0748360:CDS 30.0%
GAAAAGGTAGAGATATCTTT+GGG + chr5_2:1516501-1516520 None:intergenic 30.0%
TGAAAAGGTAGAGATATCTT+TGG + chr5_2:1516502-1516521 None:intergenic 30.0%
!! TTGGACTAGCTATTTGTAAA+AGG - chr5_2:1516724-1516743 Msa0748360:intron 30.0%
ACTAGCTATTTGTAAAAGGT+AGG - chr5_2:1516728-1516747 Msa0748360:intron 30.0%
CTAGCTATTTGTAAAAGGTA+GGG - chr5_2:1516729-1516748 Msa0748360:intron 30.0%
CTACATTTGTAGTCAAACTT+GGG - chr5_2:1516946-1516965 Msa0748360:intron 30.0%
!!! AGATATGCAATTTTGGTGTT+TGG + chr5_2:1517122-1517141 None:intergenic 30.0%
ATCTTTATATCAATGTCGAC+TGG - chr5_2:1517138-1517157 Msa0748360:intron 30.0%
! GTATAACTAGTTGATACGAT+AGG + chr5_2:1517277-1517296 None:intergenic 30.0%
! ATAACTTGGAGCAGTATTTT+AGG - chr5_2:1517332-1517351 Msa0748360:intron 30.0%
AAATCAATGGTTGAACTAAC+GGG + chr5_2:1517382-1517401 None:intergenic 30.0%
CAAATCAATGGTTGAACTAA+CGG + chr5_2:1517383-1517402 None:intergenic 30.0%
!! GTTAGTTCAACCATTGATTT+GGG - chr5_2:1517382-1517401 Msa0748360:five_prime_UTR 30.0%
GTTATGTTTGTGTTGTGAGT+GGG + chr5_2:1512921-1512940 None:intergenic 35.0%
TGTTATGTTTGTGTTGTGAG+TGG + chr5_2:1512922-1512941 None:intergenic 35.0%
CGTAAGATTCGAGTAATTGT+TGG - chr5_2:1513326-1513345 Msa0748360:CDS 35.0%
! ATATTTAGATTCGTGCTGCT+GGG - chr5_2:1513363-1513382 Msa0748360:CDS 35.0%
TCAAACTCAATACCTCAGAT+TGG - chr5_2:1513464-1513483 Msa0748360:CDS 35.0%
CAAACTCAATACCTCAGATT+GGG - chr5_2:1513465-1513484 Msa0748360:CDS 35.0%
ACGGGTTCAAAAACAAAAAG+TGG + chr5_2:1513626-1513645 None:intergenic 35.0%
! CTTTTACAGATCCTTTCATG+TGG - chr5_2:1513668-1513687 Msa0748360:CDS 35.0%
TACTTGACAAGAAGTTCATC+TGG + chr5_2:1513742-1513761 None:intergenic 35.0%
CTGCTTTCTTTCCATATAGA+TGG - chr5_2:1513839-1513858 Msa0748360:intron 35.0%
TGCATAAGAACCCATCTATA+TGG + chr5_2:1513853-1513872 None:intergenic 35.0%
!! GTTTTAACACTCAACAGATC+GGG + chr5_2:1514033-1514052 None:intergenic 35.0%
!! GGTTTTAACACTCAACAGAT+CGG + chr5_2:1514034-1514053 None:intergenic 35.0%
TGTTCTTAAGGAACAACTCA+CGG + chr5_2:1514056-1514075 None:intergenic 35.0%
TGAGTTGTTCCTTAAGAACA+AGG - chr5_2:1514056-1514075 Msa0748360:CDS 35.0%
ATTCTTACTCAGGAAGAAAC+CGG - chr5_2:1514108-1514127 Msa0748360:CDS 35.0%
!! AAATTAGGAGCACTCTTGAT+AGG - chr5_2:1514157-1514176 Msa0748360:CDS 35.0%
! TATTCTAAAGACCACTCTTG+TGG - chr5_2:1514185-1514204 Msa0748360:CDS 35.0%
AGATTCAAACCACTTCTTGA+TGG + chr5_2:1514255-1514274 None:intergenic 35.0%
TTGACAATAGGAAGGTTTGT+TGG + chr5_2:1514327-1514346 None:intergenic 35.0%
AGACTTCATTGACAATAGGA+AGG + chr5_2:1514335-1514354 None:intergenic 35.0%
CTGAAGACTTCATTGACAAT+AGG + chr5_2:1514339-1514358 None:intergenic 35.0%
! ACTTTCTAGCACTATCAGTA+GGG + chr5_2:1514545-1514564 None:intergenic 35.0%
!! CTATTGCTGTGAACTTGTTT+TGG - chr5_2:1514760-1514779 Msa0748360:intron 35.0%
!!! TGTGAACTTGTTTTGGAGTT+TGG - chr5_2:1514767-1514786 Msa0748360:intron 35.0%
AGGAAATGGCTATCAATCAT+TGG - chr5_2:1514811-1514830 Msa0748360:intron 35.0%
CTATCAATCATTGGCCATTT+GGG - chr5_2:1514820-1514839 Msa0748360:intron 35.0%
TATTCTGTCTTCTACCTTGA+TGG + chr5_2:1514865-1514884 None:intergenic 35.0%
GGTTCTTTACTTAAGTCACT+AGG + chr5_2:1514893-1514912 None:intergenic 35.0%
AACCATATTAGGTATGCATG+TGG - chr5_2:1514909-1514928 Msa0748360:intron 35.0%
TCCCAATAAGTGGCTAAAAA+AGG - chr5_2:1514954-1514973 Msa0748360:intron 35.0%
!!! CCCTTTTTTAGCCACTTATT+GGG + chr5_2:1514958-1514977 None:intergenic 35.0%
CCCAATAAGTGGCTAAAAAA+GGG - chr5_2:1514955-1514974 Msa0748360:intron 35.0%
!!! TCCCTTTTTTAGCCACTTAT+TGG + chr5_2:1514959-1514978 None:intergenic 35.0%
AATAAGTGGCTAAAAAAGGG+AGG - chr5_2:1514958-1514977 Msa0748360:intron 35.0%
ATAAGTGGCTAAAAAAGGGA+GGG - chr5_2:1514959-1514978 Msa0748360:intron 35.0%
ATGTGTAAACTATATCGCAG+AGG + chr5_2:1515048-1515067 None:intergenic 35.0%
TCTGCGATATAGTTTACACA+TGG - chr5_2:1515047-1515066 Msa0748360:intron 35.0%
GGCCAAAATCAAAATTAGAC+TGG + chr5_2:1515118-1515137 None:intergenic 35.0%
CTCAATATCAAGACTGAGAT+AGG - chr5_2:1515156-1515175 Msa0748360:intron 35.0%
AGAACGAGATTGGAAAAATG+GGG - chr5_2:1515201-1515220 Msa0748360:intron 35.0%
!! ATGTTGGCGACATTTTGAAA+CGG + chr5_2:1515493-1515512 None:intergenic 35.0%
CTACCTGTATGGAAACTAAA+TGG + chr5_2:1515633-1515652 None:intergenic 35.0%
CAAAATAGCAGCATGTGAAA+GGG + chr5_2:1515662-1515681 None:intergenic 35.0%
TTTCATGATTCATGACTGCA+AGG + chr5_2:1515786-1515805 None:intergenic 35.0%
! AGCATTGTCATCACTTCTTT+TGG - chr5_2:1515831-1515850 Msa0748360:CDS 35.0%
! TGGTAGCCTTGAATTAGAAA+TGG - chr5_2:1515963-1515982 Msa0748360:CDS 35.0%
ATGGCAAAAATCAACCTTCA+TGG - chr5_2:1515982-1516001 Msa0748360:CDS 35.0%
! AATCAACCTTCATGGTGTTT+TGG - chr5_2:1515990-1516009 Msa0748360:CDS 35.0%
! ATCAACCTTCATGGTGTTTT+GGG - chr5_2:1515991-1516010 Msa0748360:CDS 35.0%
GGGGCAAGAATTAAAGTAAT+GGG + chr5_2:1516155-1516174 None:intergenic 35.0%
AGGGGCAAGAATTAAAGTAA+TGG + chr5_2:1516156-1516175 None:intergenic 35.0%
! CAGACACTTTTGAATGTTGT+GGG - chr5_2:1516218-1516237 Msa0748360:CDS 35.0%
TGCTGTCAAATATACTAAGG+AGG - chr5_2:1516244-1516263 Msa0748360:CDS 35.0%
GCTGTCAAATATACTAAGGA+GGG - chr5_2:1516245-1516264 Msa0748360:CDS 35.0%
! TTTTATCCAGCATCAAGTGA+TGG - chr5_2:1516332-1516351 Msa0748360:CDS 35.0%
TCATTTCTATATACGAGTCC+AGG - chr5_2:1516355-1516374 Msa0748360:CDS 35.0%
TCATCCATACCTACATTTCT+AGG - chr5_2:1516469-1516488 Msa0748360:CDS 35.0%
CTTTCCTAGAAATGTAGGTA+TGG + chr5_2:1516476-1516495 None:intergenic 35.0%
AAGAGATGTGGAATATCTTG+TGG + chr5_2:1516648-1516667 None:intergenic 35.0%
GTAAACTTGGTAAAGAGATG+TGG + chr5_2:1516660-1516679 None:intergenic 35.0%
AGATTTGTAAATCTCATGGG+TGG - chr5_2:1516879-1516898 Msa0748360:intron 35.0%
GATTTGTAAATCTCATGGGT+GGG - chr5_2:1516880-1516899 Msa0748360:intron 35.0%
GCTACATTTGTAGTCAAACT+TGG - chr5_2:1516945-1516964 Msa0748360:intron 35.0%
GTAAGTGCTTAAATCTAGCA+AGG + chr5_2:1517043-1517062 None:intergenic 35.0%
! TTACTCAATGATGACGACAT+AGG - chr5_2:1517059-1517078 Msa0748360:intron 35.0%
! CGTTAGTTCAACCATTGATT+TGG - chr5_2:1517381-1517400 Msa0748360:five_prime_UTR 35.0%
TTCATTGAACCGAGTTAAAC+TGG - chr5_2:1517450-1517469 Msa0748360:five_prime_UTR 35.0%
TAAACTGGTTGAACCACAAT+TGG - chr5_2:1517465-1517484 Msa0748360:five_prime_UTR 35.0%
AAAACCAGTTGAACCAATTG+TGG + chr5_2:1517481-1517500 None:intergenic 35.0%
AAGTCTCCGCCTAATCTATT+TGG - chr5_2:1513010-1513029 Msa0748360:three_prime_UTR 40.0%
! GTGGATTGATACCGGAAAAA+GGG + chr5_2:1513060-1513079 None:intergenic 40.0%
!! AGTGGATTGATACCGGAAAA+AGG + chr5_2:1513061-1513080 None:intergenic 40.0%
!! TAGAGAGAGTGGATTGATAC+CGG + chr5_2:1513068-1513087 None:intergenic 40.0%
CATATTTAGATTCGTGCTGC+TGG - chr5_2:1513362-1513381 Msa0748360:CDS 40.0%
ATAGCATAGGTTGTCATCAC+GGG + chr5_2:1513644-1513663 None:intergenic 40.0%
CATAGCATAGGTTGTCATCA+CGG + chr5_2:1513645-1513664 None:intergenic 40.0%
!! CTGTAAAAGCACCATAGCAT+AGG + chr5_2:1513657-1513676 None:intergenic 40.0%
ATCTAACACACCCACATGAA+AGG + chr5_2:1513682-1513701 None:intergenic 40.0%
AGAAGTTCATCTGGAGGATA+AGG + chr5_2:1513733-1513752 None:intergenic 40.0%
TTGACAAGAAGTTCATCTGG+AGG + chr5_2:1513739-1513758 None:intergenic 40.0%
! AGATGGGTTCTTATGCAGTT+TGG - chr5_2:1513856-1513875 Msa0748360:intron 40.0%
! GATGGGTTCTTATGCAGTTT+GGG - chr5_2:1513857-1513876 Msa0748360:intron 40.0%
ATGGGTTCTTATGCAGTTTG+GGG - chr5_2:1513858-1513877 Msa0748360:intron 40.0%
! GGGGCTTTTATTGTTCTATG+TGG - chr5_2:1513877-1513896 Msa0748360:intron 40.0%
ATGAACAAGCATAAGTGCAG+TGG + chr5_2:1514004-1514023 None:intergenic 40.0%
GTTCTTAAGGAACAACTCAC+GGG + chr5_2:1514055-1514074 None:intergenic 40.0%
GTTGTTCCTTAAGAACAAGG+CGG - chr5_2:1514059-1514078 Msa0748360:CDS 40.0%
GATGGGACTTATTCTTACTC+AGG - chr5_2:1514098-1514117 Msa0748360:CDS 40.0%
CAACATTCTCACATGTCTTC+CGG + chr5_2:1514130-1514149 None:intergenic 40.0%
GCTCAGGCCAATCATTAATT+TGG + chr5_2:1514485-1514504 None:intergenic 40.0%
!! TAATGATTGGCCTGAGCTTT+CGG - chr5_2:1514488-1514507 Msa0748360:CDS 40.0%
! TAACTTTTTGCCGAAAGCTC+AGG + chr5_2:1514501-1514520 None:intergenic 40.0%
! CACTTTCTAGCACTATCAGT+AGG + chr5_2:1514546-1514565 None:intergenic 40.0%
! CTACTGATAGTGCTAGAAAG+TGG - chr5_2:1514544-1514563 Msa0748360:CDS 40.0%
AGACTCAGAACAGAACTTAC+AGG + chr5_2:1514738-1514757 None:intergenic 40.0%
GCTATCAATCATTGGCCATT+TGG - chr5_2:1514819-1514838 Msa0748360:intron 40.0%
CTCCACATGCATACCTAATA+TGG + chr5_2:1514914-1514933 None:intergenic 40.0%
TGGCCATTGAAGATATATGG+TGG - chr5_2:1515133-1515152 Msa0748360:intron 40.0%
GAGCCACCATATATCTTCAA+TGG + chr5_2:1515139-1515158 None:intergenic 40.0%
TATCAAGACTGAGATAGGCT+CGG - chr5_2:1515161-1515180 Msa0748360:intron 40.0%
AATCTGATGCAGATCTGTCT+AGG - chr5_2:1515278-1515297 Msa0748360:intron 40.0%
!! TTTGGTCTTTTCGGATTAGG+AGG + chr5_2:1515370-1515389 None:intergenic 40.0%
! TAAATGGATTCAGCATACGG+AGG + chr5_2:1515617-1515636 None:intergenic 40.0%
CCAAAATAGCAGCATGTGAA+AGG + chr5_2:1515663-1515682 None:intergenic 40.0%
!! CCTTTCACATGCTGCTATTT+TGG - chr5_2:1515660-1515679 Msa0748360:intron 40.0%
!!! TTCACATGCTGCTATTTTGG+AGG - chr5_2:1515663-1515682 Msa0748360:intron 40.0%
!! TTTGTTCCATGAGTTGATCC+CGG + chr5_2:1515702-1515721 None:intergenic 40.0%
ACGTTGCCTTAGATTTAGCT+CGG - chr5_2:1515722-1515741 Msa0748360:intron 40.0%
! GCAGACACTTTTGAATGTTG+TGG - chr5_2:1516217-1516236 Msa0748360:CDS 40.0%
TGCAAAACCAGAATCCTTAC+AGG - chr5_2:1516292-1516311 Msa0748360:CDS 40.0%
AACCAGAATCCTTACAGGAT+TGG - chr5_2:1516297-1516316 Msa0748360:CDS 40.0%
CTTGATGCTGGATAAAACTC+AGG + chr5_2:1516329-1516348 None:intergenic 40.0%
AAATGACCATCACTTGATGC+TGG + chr5_2:1516341-1516360 None:intergenic 40.0%
TGCACAAAGAAGGATGTTTG+GGG + chr5_2:1516597-1516616 None:intergenic 40.0%
CTGCACAAAGAAGGATGTTT+GGG + chr5_2:1516598-1516617 None:intergenic 40.0%
ATCCTTCTTTGTGCAGGTTA+AGG - chr5_2:1516602-1516621 Msa0748360:CDS 40.0%
ATCCTTAACCTGCACAAAGA+AGG + chr5_2:1516607-1516626 None:intergenic 40.0%
TTTGTGCAGGTTAAGGATTC+TGG - chr5_2:1516609-1516628 Msa0748360:CDS 40.0%
!! ACTCTGAGACTGAGTAAACT+TGG + chr5_2:1516673-1516692 None:intergenic 40.0%
AAGTTTACTCAGTCTCAGAG+TGG - chr5_2:1516672-1516691 Msa0748360:CDS 40.0%
!! GGTAATAATGGTGACTTGCT+AGG + chr5_2:1516778-1516797 None:intergenic 40.0%
GTAGTCAAACTTGGGATTTG+TGG - chr5_2:1516954-1516973 Msa0748360:intron 40.0%
GCTGTTTGCAGCTATAGATT+AGG - chr5_2:1517205-1517224 Msa0748360:intron 40.0%
!! TCAACCATTGATTTGGGAGT+CGG - chr5_2:1517388-1517407 Msa0748360:five_prime_UTR 40.0%
GTGGTTCAACCAGTTTAACT+CGG + chr5_2:1517462-1517481 None:intergenic 40.0%
! TGAACCACAATTGGTTCAAC+TGG - chr5_2:1517474-1517493 Msa0748360:five_prime_UTR 40.0%
AGTGCGCCAAATAGATTAGG+CGG + chr5_2:1513019-1513038 None:intergenic 45.0%
AAAAAGGGAGGTAGATCAGG+CGG + chr5_2:1513045-1513064 None:intergenic 45.0%
! CTGATCTACCTCCCTTTTTC+CGG - chr5_2:1513046-1513065 Msa0748360:three_prime_UTR 45.0%
GATTGATACCGGAAAAAGGG+AGG + chr5_2:1513057-1513076 None:intergenic 45.0%
CGTGATGACAACCTATGCTA+TGG - chr5_2:1513643-1513662 Msa0748360:intron 45.0%
CATGTGGGTGTGTTAGATGA+TGG - chr5_2:1513684-1513703 Msa0748360:CDS 45.0%
GAAGAGCTTGATAGGGAGAT+GGG - chr5_2:1514081-1514100 Msa0748360:CDS 45.0%
AAAGACCACTCTTGTGGAGT+TGG - chr5_2:1514191-1514210 Msa0748360:CDS 45.0%
AAGACCACTCTTGTGGAGTT+GGG - chr5_2:1514192-1514211 Msa0748360:CDS 45.0%
!! GTTGGGTAGGACTTTAGGAT+TGG - chr5_2:1514209-1514228 Msa0748360:CDS 45.0%
TGTGGTATACGCATAGCTCT+CGG + chr5_2:1514366-1514385 None:intergenic 45.0%
! AGAGGTCTTATCCTAGCAAG+TGG + chr5_2:1514396-1514415 None:intergenic 45.0%
GCTAGGATAAGACCTCTTGT+CGG - chr5_2:1514399-1514418 Msa0748360:CDS 45.0%
TGTCGATGTTGTTGCAGATC+AGG - chr5_2:1514587-1514606 Msa0748360:CDS 45.0%
AGCCACTTATTGGGATTCAG+CGG + chr5_2:1514949-1514968 None:intergenic 45.0%
ATCAAGACTGAGATAGGCTC+GGG - chr5_2:1515162-1515181 Msa0748360:intron 45.0%
!! TTGTTCCATGAGTTGATCCC+GGG + chr5_2:1515701-1515720 None:intergenic 45.0%
TCTATCATAACCCTCTGCTC+TGG + chr5_2:1515871-1515890 None:intergenic 45.0%
TGGCATGAGTAGGTAGATCA+GGG + chr5_2:1516175-1516194 None:intergenic 45.0%
ATGGCATGAGTAGGTAGATC+AGG + chr5_2:1516176-1516195 None:intergenic 45.0%
GATCTACCTACTCATGCCAT+CGG - chr5_2:1516176-1516195 Msa0748360:CDS 45.0%
ATGCCATCGGTGATGAAAAG+CGG - chr5_2:1516189-1516208 Msa0748360:CDS 45.0%
GATGCTGGATAAAACTCAGG+AGG + chr5_2:1516326-1516345 None:intergenic 45.0%
ACGAGTCCAGGTTATGACTT+TGG - chr5_2:1516367-1516386 Msa0748360:CDS 45.0%
GAGATGCCAAAGTCATAACC+TGG + chr5_2:1516376-1516395 None:intergenic 45.0%
GGGCTCTTTCCTAGAAATGT+AGG + chr5_2:1516481-1516500 None:intergenic 45.0%
CCTGCACAAAGAAGGATGTT+TGG + chr5_2:1516599-1516618 None:intergenic 45.0%
CCAAACATCCTTCTTTGTGC+AGG - chr5_2:1516596-1516615 Msa0748360:CDS 45.0%
CAGGTTAAGGATTCTGGATG+TGG - chr5_2:1516615-1516634 Msa0748360:CDS 45.0%
! TCTGCTTGCAGCTTGATGAT+CGG + chr5_2:1516994-1517013 None:intergenic 45.0%
CTCCACTTCCACTATATGCT+TGG + chr5_2:1517019-1517038 None:intergenic 45.0%
! CAAGCATATAGTGGAAGTGG+AGG - chr5_2:1517017-1517036 Msa0748360:intron 45.0%
! CTAACCGACTCCCAAATCAA+TGG + chr5_2:1517395-1517414 None:intergenic 45.0%
! GAGTCGGTTAGTTCATCAGT+TGG - chr5_2:1517404-1517423 Msa0748360:five_prime_UTR 45.0%
!! AAAAAAAAAAAAAATAGTAT+AGG + chr5_2:1513297-1513316 None:intergenic 5.0%
CGGAGTGCGCCAAATAGATT+AGG + chr5_2:1513022-1513041 None:intergenic 50.0%
CGGAAAAAGGGAGGTAGATC+AGG + chr5_2:1513048-1513067 None:intergenic 50.0%
AGCACACGACACTTTAGCGA+TGG + chr5_2:1513968-1513987 None:intergenic 50.0%
! GCTCTTCCGCCTTGTTCTTA+AGG + chr5_2:1514068-1514087 None:intergenic 50.0%
ACAAGGCGGAAGAGCTTGAT+AGG - chr5_2:1514073-1514092 Msa0748360:CDS 50.0%
CAAGGCGGAAGAGCTTGATA+GGG - chr5_2:1514074-1514093 Msa0748360:CDS 50.0%
GGAAGAGCTTGATAGGGAGA+TGG - chr5_2:1514080-1514099 Msa0748360:CDS 50.0%
GTGGAGTTGGGTAGGACTTT+AGG - chr5_2:1514204-1514223 Msa0748360:CDS 50.0%
!! GGGTAGGACTTTAGGATTGG+AGG - chr5_2:1514212-1514231 Msa0748360:CDS 50.0%
GATTGGAGGAATGTGCACTG+TGG - chr5_2:1514226-1514245 Msa0748360:CDS 50.0%
CTGTGGATGCCATCAAGAAG+TGG - chr5_2:1514243-1514262 Msa0748360:CDS 50.0%
GTGGTATACGCATAGCTCTC+GGG + chr5_2:1514365-1514384 None:intergenic 50.0%
CTAGCAAGTGGACAAGTGTG+TGG + chr5_2:1514384-1514403 None:intergenic 50.0%
CACACACTTGTCCACTTGCT+AGG - chr5_2:1514382-1514401 Msa0748360:intron 50.0%
GGCACATATCTTCCGACAAG+AGG + chr5_2:1514414-1514433 None:intergenic 50.0%
TGTGCCACCTGAAGTTGTTG+CGG - chr5_2:1514428-1514447 Msa0748360:CDS 50.0%
CACCTGAAGTTGTTGCGGTT+CGG - chr5_2:1514433-1514452 Msa0748360:CDS 50.0%
ACCTGAAGTTGTTGCGGTTC+GGG - chr5_2:1514434-1514453 Msa0748360:CDS 50.0%
AAAGTGGCGAGACCATGAGT+TGG - chr5_2:1514560-1514579 Msa0748360:CDS 50.0%
CATCGACAAGCTCCAACTCA+TGG + chr5_2:1514575-1514594 None:intergenic 50.0%
CTCACATGCACCTCAGATGT+GGG - chr5_2:1515541-1515560 Msa0748360:intron 50.0%
TCACATGCACCTCAGATGTG+GGG - chr5_2:1515542-1515561 Msa0748360:intron 50.0%
CAATCATGTCCCCACATCTG+AGG + chr5_2:1515554-1515573 None:intergenic 50.0%
AAGGGCAACTGCTACCTGTA+TGG + chr5_2:1515644-1515663 None:intergenic 50.0%
CTCTCGCCGAGCTAAATCTA+AGG + chr5_2:1515731-1515750 None:intergenic 50.0%
! CTTAGATTTAGCTCGGCGAG+AGG - chr5_2:1515729-1515748 Msa0748360:intron 50.0%
! TGAACTGACTCCAGAGCAGA+GGG - chr5_2:1515858-1515877 Msa0748360:CDS 50.0%
! TGTTCTAGATCTGTCCCGAC+TGG - chr5_2:1515936-1515955 Msa0748360:CDS 50.0%
AAGGCTACCATCTTCCAGTC+GGG + chr5_2:1515953-1515972 None:intergenic 50.0%
CAAGGCTACCATCTTCCAGT+CGG + chr5_2:1515954-1515973 None:intergenic 50.0%
CCTCTCCCAAAACACCATGA+AGG + chr5_2:1515999-1516018 None:intergenic 50.0%
!!! CCTTCATGGTGTTTTGGGAG+AGG - chr5_2:1515996-1516015 Msa0748360:CDS 50.0%
GGCATGAGTAGGTAGATCAG+GGG + chr5_2:1516174-1516193 None:intergenic 50.0%
TCATCACCGATGGCATGAGT+AGG + chr5_2:1516185-1516204 None:intergenic 50.0%
!!! AAGCCGCTTTTCATCACCGA+TGG + chr5_2:1516195-1516214 None:intergenic 50.0%
CGCCAATCCTGTAAGGATTC+TGG + chr5_2:1516302-1516321 None:intergenic 50.0%
! GTTTGGGGTCAGTCATGAGA+TGG + chr5_2:1516582-1516601 None:intergenic 50.0%
GAACCACTGCTAGATCGAAC+AGG + chr5_2:1516699-1516718 None:intergenic 50.0%
GTTCGATCTAGCAGTGGTTC+AGG - chr5_2:1516699-1516718 Msa0748360:exon 50.0%
TCTAGCAGTGGTTCAGGTCT+TGG - chr5_2:1516705-1516724 Msa0748360:exon 50.0%
ATCTCATGGGTGGGCACATA+TGG - chr5_2:1516889-1516908 Msa0748360:intron 50.0%
CACATATGGATGGAGAGCGA+GGG - chr5_2:1516903-1516922 Msa0748360:intron 50.0%
! CTTGCAGCTTGATGATCGGA+TGG + chr5_2:1516990-1517009 None:intergenic 50.0%
GATCATCAAGCTGCAAGCAG+AGG - chr5_2:1516993-1517012 Msa0748360:intron 50.0%
AGCAGAGGCCAAGCATATAG+TGG - chr5_2:1517008-1517027 Msa0748360:intron 50.0%
! GGCCAAGCATATAGTGGAAG+TGG - chr5_2:1517014-1517033 Msa0748360:intron 50.0%
CCTACCCAACTCCACAAGAG+TGG + chr5_2:1514199-1514218 None:intergenic 55.0%
CCACTCTTGTGGAGTTGGGT+AGG - chr5_2:1514196-1514215 Msa0748360:CDS 55.0%
CGAACCGCAACAACTTCAGG+TGG + chr5_2:1514435-1514454 None:intergenic 55.0%
ACCCGAACCGCAACAACTTC+AGG + chr5_2:1514438-1514457 None:intergenic 55.0%
TGCATGTGGAGTATGCGCTG+AGG - chr5_2:1514923-1514942 Msa0748360:intron 55.0%
GGCCGCTGAATCCCAATAAG+TGG - chr5_2:1514944-1514963 Msa0748360:intron 55.0%
GTGGCTAAAAAAGGGAGGGC+AGG - chr5_2:1514963-1514982 Msa0748360:intron 55.0%
! AGGAGGCATGTGCAGGCAAA+GGG + chr5_2:1515353-1515372 None:intergenic 55.0%
! TAGGAGGCATGTGCAGGCAA+AGG + chr5_2:1515354-1515373 None:intergenic 55.0%
! TCGGATTAGGAGGCATGTGC+AGG + chr5_2:1515360-1515379 None:intergenic 55.0%
! CCACATCTGAGGTGCATGTG+AGG + chr5_2:1515543-1515562 None:intergenic 55.0%
CCTCACATGCACCTCAGATG+TGG - chr5_2:1515540-1515559 Msa0748360:intron 55.0%
! CTGAACTGACTCCAGAGCAG+AGG - chr5_2:1515857-1515876 Msa0748360:CDS 55.0%
GATCTGTCCCGACTGGAAGA+TGG - chr5_2:1515943-1515962 Msa0748360:CDS 55.0%
AGGAGGTCGCCAATCCTGTA+AGG + chr5_2:1516309-1516328 None:intergenic 55.0%
GGACCTGTTCGATCTAGCAG+TGG - chr5_2:1516693-1516712 Msa0748360:CDS 55.0%
CATGGGTGGGCACATATGGA+TGG - chr5_2:1516893-1516912 Msa0748360:intron 55.0%
GCACATATGGATGGAGAGCG+AGG - chr5_2:1516902-1516921 Msa0748360:intron 55.0%
GAGAGCGAGGGTCACGATAA+AGG - chr5_2:1516915-1516934 Msa0748360:intron 55.0%
AAGGGAGGTAGATCAGGCGG+CGG + chr5_2:1513042-1513061 None:intergenic 60.0%
AGCTCGGCGAGAGGCTGAAA+TGG - chr5_2:1515738-1515757 Msa0748360:intron 60.0%
TGGAGGAGTCCATGCGAGCC+CGG - chr5_2:1515680-1515699 Msa0748360:intron 65.0%
! GAGTTGATCCCGGGCTCGCA+TGG + chr5_2:1515692-1515711 None:intergenic 65.0%
GCGAGCCCGGGATCAACTCA+TGG - chr5_2:1515693-1515712 Msa0748360:intron 65.0%
GGAGGAGTCCATGCGAGCCC+GGG - chr5_2:1515681-1515700 Msa0748360:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1512876 1517536 1512876 ID=Msa0748360;Name=Msa0748360
chr5_2 mRNA 1512876 1517536 1512876 ID=Msa0748360-mRNA-1;Parent=Msa0748360;Name=Msa0748360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=215|1|1|1|0.8|0.66|6|421|635
chr5_2 exon 1512876 1513531 1512876 ID=Msa0748360-mRNA-1:exon:471;Parent=Msa0748360-mRNA-1
chr5_2 exon 1513667 1513794 1513667 ID=Msa0748360-mRNA-1:exon:470;Parent=Msa0748360-mRNA-1
chr5_2 exon 1514036 1514302 1514036 ID=Msa0748360-mRNA-1:exon:469;Parent=Msa0748360-mRNA-1
chr5_2 exon 1514395 1514763 1514395 ID=Msa0748360-mRNA-1:exon:468;Parent=Msa0748360-mRNA-1
chr5_2 exon 1515804 1516735 1515804 ID=Msa0748360-mRNA-1:exon:467;Parent=Msa0748360-mRNA-1
chr5_2 exon 1517345 1517536 1517345 ID=Msa0748360-mRNA-1:exon:466;Parent=Msa0748360-mRNA-1
chr5_2 five_prime_UTR 1517345 1517536 1517345 ID=Msa0748360-mRNA-1:five_prime_utr;Parent=Msa0748360-mRNA-1
chr5_2 five_prime_UTR 1516713 1516735 1516713 ID=Msa0748360-mRNA-1:five_prime_utr;Parent=Msa0748360-mRNA-1
chr5_2 CDS 1515804 1516712 1515804 ID=Msa0748360-mRNA-1:cds;Parent=Msa0748360-mRNA-1
chr5_2 CDS 1514395 1514763 1514395 ID=Msa0748360-mRNA-1:cds;Parent=Msa0748360-mRNA-1
chr5_2 CDS 1514036 1514302 1514036 ID=Msa0748360-mRNA-1:cds;Parent=Msa0748360-mRNA-1
chr5_2 CDS 1513667 1513794 1513667 ID=Msa0748360-mRNA-1:cds;Parent=Msa0748360-mRNA-1
chr5_2 CDS 1513297 1513531 1513297 ID=Msa0748360-mRNA-1:cds;Parent=Msa0748360-mRNA-1
chr5_2 three_prime_UTR 1512876 1513296 1512876 ID=Msa0748360-mRNA-1:three_prime_utr;Parent=Msa0748360-mRNA-1
Gene Sequence

>Msa0748360

ATGATGGAGTCTTGCGAGTGTATCGACACGCCTTATCCTCCAGATGAACTTCTTGTCAAGTATCAATACATCTCTGACGTTCTAATCGCACTTGCGTATTTCTCAATTCCTGTCGAACTCATTTATTTTGTTCAGAAATCTGCTTTCTTTCCATATAGATGGGTTCTTATGCAGTTTGGGGCTTTTATTGTTCTATGTGGAGCAACTCATTTTATAAATCTGTGGACATTCTCAGCTCACACGAAAGCTGTTGCTGTTGTAATGACCATCGCTAAAGTGTCGTGTGCTATTGTCTCATGTGCCACTGCACTTATGCTTGTTCATATTATTCCCGATCTGTTGAGTGTTAAAACCCGTGAGTTGTTCCTTAAGAACAAGGCGGAAGAGCTTGATAGGGAGATGGGACTTATTCTTACTCAGGAAGAAACCGGAAGACATGTGAGAATGTTGACTCATGAAATTAGGAGCACTCTTGATAGGCATACTATTCTAAAGACCACTCTTGTGGAGTTGGGTAGGACTTTAGGATTGGAGGAATGTGCACTGTGGATGCCATCAAGAAGTGGTTTGAATCTACAACTTTCTCATACTTTAACTTATCATGTACAAGTTGGTTCTACTGTGCCAACAAACCTTCCTATTGTCAATGAAGTCTTCAGTAACCCGAGAGCTATGCGTATACCACACACTTGTCCACTTGCTAGGATAAGACCTCTTGTCGGAAGATATGTGCCACCTGAAGTTGTTGCGGTTCGGGTGCCGCTTCTACATTTGTCAAATTTCCAAATTAATGATTGGCCTGAGCTTTCGGCAAAAAGTTATGCAATTATGGTTCTTATTCTCCCTACTGATAGTGCTAGAAAGTGGCGAGACCATGAGTTGGAGCTTGTCGATGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCCATGCGAGCCCGGGATCAACTCATGGAACAAAACGTTGCCTTAGATTTAGCTCGGCGAGAGGCTGAAATGGCAATTCATGCTCGCAATGATTTCCTTGCAGTCATGAATCATGAAATGAGAACACCGATGCATGCAATTATAGCATTGTCATCACTTCTTTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACTGTATTGAAGAGTAGTAATGTTTTGGCAGCACTTATCAATGATGTTCTAGATCTGTCCCGACTGGAAGATGGTAGCCTTGAATTAGAAATGGCAAAAATCAACCTTCATGGTGTTTTGGGAGAGGTCATTGAACTGATTAAGCCTATAGCATCTGTGAAAAAACTACCCATTACTTTAATTCTTGCCCCTGATCTACCTACTCATGCCATCGGTGATGAAAAGCGGCTTATGCAGACACTTTTGAATGTTGTGGGCAATGCTGTCAAATATACTAAGGAGGGCTATGTTTCTATAAGAGCTTCTGTTGCAAAACCAGAATCCTTACAGGATTGGCGACCTCCTGAGTTTTATCCAGCATCAAGTGATGGTCATTTCTATATACGAGTCCAGGTTAAGGATTCTGGATGTGGCATTCTACCACAAGATATTCCACATCTCTTTACCAAGTTTACTCAGTCTCAGAGTGGACCTGTTCGATCTAGCAGTGGTTCAGGTCTTGGACTAGCTATTTGTAAAAGATTTGTAAATCTCATGGGTGGGCACATATGGATGGAGAGCGAGGGTCACGATAAAGGAAGCACAGCTACATTTGTAGTCAAACTTGGGATTTGTGGCAATGCAGATCCATCCGATCATCAAGCTGCAAGCAGAGGCCAAGCATATAGTGGAAGTGGAGGCCTTGCTAGATTTAAGCACTTACTCAATGATGACGACATAGGTTTTTCTAATAGACGCAATCAAAGAAGTTTCTGA
Protein sequence

>Msa0748360

MMESCECIDTPYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSAHTKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVPTNLPIVNEVFSNPRAMRIPHTCPLARIRPLVGRYVPPEVVAVRVPLLHLSNFQINDWPELSAKSYAIMVLILPTDSARKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMAKINLHGVLGEVIELIKPIASVKKLPITLILAPDLPTHAIGDEKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFTQSQSGPVRSSSGSGLGLAICKRFVNLMGGHIWMESEGHDKGSTATFVVKLGICGNADPSDHQAASRGQAYSGSGGLARFKHLLNDDDIGFSNRRNQRSF*