AlfalfaGEDB | Msa1084060

M. sativa cultivar zhongmu-4 / Msa1084060

KEGG: -
GO: -
PFAM: PF14383.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1084060	XP_013450452.1	93.969	912	51	3	1	910	1	910	0.0	1748

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1084060	A0A072UFB2	93.969	912	51	3	1	910	1	910	0.0	1748

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0647130	Msa1084060	0.813899	2.026457e-51	-8.615850e-47
Msa0662600	Msa1084060	0.918012	2.632215e-86	-8.615850e-47
Msa0754520	Msa1084060	0.808327	3.271154e-50	-8.615850e-47
Msa1039930	Msa1084060	0.894247	2.950179e-75	-8.615850e-47
Msa1065370	Msa1084060	0.804500	2.097286e-49	-8.615850e-47
Msa1084060	Msa1097640	0.809335	1.991122e-50	-8.615850e-47
Msa1084060	Msa1124680	-0.804966	1.676329e-49	-8.615850e-47
Msa1084060	Msa1154690	0.802463	5.543952e-49	-8.615850e-47
Msa1084060	Msa1242240	0.801050	1.081155e-48	-8.615850e-47
Msa1084060	Msa1320740	0.805662	1.197972e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1084060	MtrunA17_Chr7g0271711	93.969	912	51	3	1	910	1	910	0.0	1748
Msa1084060	MtrunA17_Chr1g0192581	46.224	874	334	27	52	910	5	757	0.0	587
Msa1084060	MtrunA17_Chr2g0294831	32.918	963	543	28	2	908	6	921	1.09e-115	375
Msa1084060	MtrunA17_Chr7g0250831	26.047	430	257	15	491	908	555	935	3.10e-19	93.6
Msa1084060	MtrunA17_Chr6g0457761	25.306	490	264	20	449	908	461	878	2.63e-17	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1084060	AT5G26910.4	31.189	917	528	21	1	908	4	826	1.42e-106	350
Msa1084060	AT5G26910.1	31.189	917	528	21	1	908	4	826	1.42e-106	350
Msa1084060	AT5G26910.3	31.189	917	527	21	1	908	4	825	3.05e-105	346
Msa1084060	AT3G58650.1	32.116	931	485	38	1	908	4	810	2.01e-93	313
Msa1084060	AT5G26910.2	32.997	594	336	12	1	586	4	543	2.45e-63	226
Msa1084060	AT3G05750.1	33.665	603	321	19	1	585	7	548	2.26e-52	197
Msa1084060	AT3G05750.1	36.970	165	94	2	746	909	644	799	2.73e-24	110
Msa1084060	AT3G05750.4	34.336	565	301	20	33	585	34	540	2.51e-49	188
Msa1084060	AT3G05750.4	36.970	165	94	2	746	909	636	791	3.71e-24	109
Msa1084060	AT3G05750.3	33.598	503	268	19	91	585	1	445	5.57e-43	167

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Find 234 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGTGCAAACCGTAA+TGG	0.554411	7_2:-84324724	Msa1084060:CDS
AAAACTCTATTCCTCGTATA+GGG	0.378718	7_2:+84325150	None:intergenic
AAACCGTAATGGCAATGTGC+TGG	0.628053	7_2:-84324713	Msa1084060:CDS
AAACTTGGAAGATGTAATGG+TGG	0.636219	7_2:-84322462	Msa1084060:CDS
AAAGCTCTTCCATGTCTATG+GGG	0.687339	7_2:-84322877	Msa1084060:CDS
AAAGGTACATCATCATTCAA+GGG	0.636259	7_2:-84324973	Msa1084060:CDS
AAATCATTTCTTTCATGATC+AGG	0.359480	7_2:+84324418	None:intergenic
AAATTAGAACTCCTCTCACC+AGG	0.597036	7_2:+84325000	None:intergenic
AAATTGCATACATTGGATAA+TGG	0.303822	7_2:-84326639	Msa1084060:five_prime_UTR
AACTCGTGTTGTCGGCTTAT+TGG	0.224076	7_2:+84324627	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGAGAAAAAACGTTCAAA+AGG	-	chr7_2:84322459-84322478	Msa1084060:CDS	30.0%
ATGATTAACATTACCAGGTA+AGG	+	chr7_2:84322550-84322569	None:intergenic	30.0%
TCAAATAAGTCAAACCAAAC+AGG	+	chr7_2:84322665-84322684	None:intergenic	30.0%
GAATGATATATGACCATGTT+TGG	+	chr7_2:84322912-84322931	None:intergenic	30.0%
TCATGCTTCTCATTATAATG+AGG	-	chr7_2:84323343-84323362	Msa1084060:intron	30.0%
CATGCTTCTCATTATAATGA+GGG	-	chr7_2:84323344-84323363	Msa1084060:intron	30.0%
AATAACCTATTGTGAGTAAC+TGG	+	chr7_2:84323539-84323558	None:intergenic	30.0%
AGAAAACCATTACTCTTGAT+TGG	+	chr7_2:84323566-84323585	None:intergenic	30.0%
AAAACTCTATTCCTCGTATA+GGG	+	chr7_2:84323653-84323672	None:intergenic	30.0%
TAAAACTCTATTCCTCGTAT+AGG	+	chr7_2:84323654-84323673	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	84321951	84326871	84321951	ID=Msa1084060;Name=Msa1084060
chr7_2	mRNA	84321951	84326871	84321951	ID=Msa1084060-mRNA-1;Parent=Msa1084060;Name=Msa1084060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=312\|1\|1\|1\|0.66\|0.71\|7\|365\|910
chr7_2	exon	84321951	84322998	84321951	ID=Msa1084060-mRNA-1:exon:22500;Parent=Msa1084060-mRNA-1
chr7_2	exon	84323494	84323635	84323494	ID=Msa1084060-mRNA-1:exon:22499;Parent=Msa1084060-mRNA-1
chr7_2	exon	84323913	84325664	84323913	ID=Msa1084060-mRNA-1:exon:22498;Parent=Msa1084060-mRNA-1
chr7_2	exon	84325775	84325833	84325775	ID=Msa1084060-mRNA-1:exon:22497;Parent=Msa1084060-mRNA-1
chr7_2	exon	84326267	84326382	84326267	ID=Msa1084060-mRNA-1:exon:22496;Parent=Msa1084060-mRNA-1
chr7_2	exon	84326544	84326786	84326544	ID=Msa1084060-mRNA-1:exon:22495;Parent=Msa1084060-mRNA-1
chr7_2	exon	84326822	84326871	84326822	ID=Msa1084060-mRNA-1:exon:22494;Parent=Msa1084060-mRNA-1
chr7_2	five_prime_UTR	84326822	84326871	84326822	ID=Msa1084060-mRNA-1:five_prime_utr;Parent=Msa1084060-mRNA-1
chr7_2	five_prime_UTR	84326544	84326786	84326544	ID=Msa1084060-mRNA-1:five_prime_utr;Parent=Msa1084060-mRNA-1
chr7_2	five_prime_UTR	84326364	84326382	84326364	ID=Msa1084060-mRNA-1:five_prime_utr;Parent=Msa1084060-mRNA-1
chr7_2	CDS	84326267	84326363	84326267	ID=Msa1084060-mRNA-1:cds;Parent=Msa1084060-mRNA-1
chr7_2	CDS	84325775	84325833	84325775	ID=Msa1084060-mRNA-1:cds;Parent=Msa1084060-mRNA-1
chr7_2	CDS	84323913	84325664	84323913	ID=Msa1084060-mRNA-1:cds;Parent=Msa1084060-mRNA-1
chr7_2	CDS	84323494	84323635	84323494	ID=Msa1084060-mRNA-1:cds;Parent=Msa1084060-mRNA-1
chr7_2	CDS	84322316	84322998	84322316	ID=Msa1084060-mRNA-1:cds;Parent=Msa1084060-mRNA-1
chr7_2	three_prime_UTR	84321951	84322315	84321951	ID=Msa1084060-mRNA-1:three_prime_utr;Parent=Msa1084060-mRNA-1

Gene Sequence

>Msa1084060

ATGGAGAAAAAACGTTCAAAAGGAAGTTTCTTTAGCCTGTTTGATTGGAATTCTAAATCTCGTAAGAAGCTCGTTTGGAACAATCAAACCTTACCTGAAGTTTCAAGGCAGGGAAAGGAAAATCTAGAGACCTTACCGGAATCAAAGTTCTATAGGATAAAGGTGGATGAGAATGGAGCAAGTCCGAGTAATATAGTAAGTGGCGATTTTTCATCAGTTTGTAGTGATGAGGGGTGTGGGAGTAAAGCTCCCGGGTTAGTAGCTAGACTAATGGGTTTGGATTCTTTGCCAACTTCGGACGTCGGTGAGCTCTCCGGTGCTTCACTATTCAGCTCCAACTTTCATGCTTCTCATTATAATGAGGGTGCTCTTCGTTCCATGGATGACTATCGTCGTGCGGACTACTTAAACACACCACTTAAGTCGGAGAAGTCTTCTTGGGATGCCATGGAATCAAGGGCACATAAAATGGAAGACCAGTCACTCAAGAGATTTCAAACTGAAATGTTGCCTCCAAAGTCGGCTAAACCCATTCCAGTTACTCACAATAGGTTATTGTCTCCAATCAAGAGTAATGGTTTTCTGCCGCCGAAGAATGCAGCTCATGTAATGGAGGCGGCTGCTAAGATAATTGATGGAAGCCCTCAGCCCTATACGAGGAATAGAGTTTTATCAGGCGGGTCTTCATCTGTTCCCTTGAGAATTCTTGATTTGAAAGAGAGATTGGAAGCTGCACAACATGCACCCATGTCTAGAAAGCTAGTCGACCCAAACAATGGCAACTCTTCAAATTGTAAGCCTGGTGAGAGGAGTTCTAATTTTGACAAAGGTACATCATCATTCAAGGGTTCAAGTTCAAGTTCAAGAGATTCTGAAAAACGTAATTATTCTCATTTAACAAGTAAAGGAAAATCAGGTTCTCCTACAATGCAAGCCAAAAACAACGTTCAAAGCAGAGATACAATGGTTTCAAATGGAAATAGGAAATATATGAAGCAGAAAGAACCGAATGAGATTAAGTCAAACCAGCTCACAAGGAGCCAGAAACCAAATACAAACCGAGCATTGCCGCAGAAAACGTGTGCAAACCGTAATGGCAATGTGCTGGTACAGAATAATCAAAAGCAAAATAGTATGACTTCCAAAGGTAAATCAACTTCAAAAATAGATTCCAATAAGCCGACAACACGAGTTTCATCTTCAGAAAGTTCTACTGGAGTCAGAAAGGCAACAAACAAGGGTGCTACAAATGTCAATGTTCAGCCTAAAAGGTCAAGCTCTAGGGCAATCAATAACCGAAAGGAGTTTCCCCCATCCAAAACACATAATATTTCTCAAAAGAAAAAGTATGACAGCAGAGGTGTTCCTGAGGCAAGAAGTCCTGATCATGAAAGAAATGATTTTGAAAGCAAGTCCATAAAATGCAATTTTACAACTGATGGAAGTATTGATCAGAATGCATTTAACATGAATGAAAGCAATGACGTTGTTTCATTTACATTTACGTCTCCCTTGAAGAGAAGTGTGCCCGAGTCACTATCCTCTGCCGAGCAAGTGATGGAAACCAGAACTAGATTTGGTGTTGACTCTCTTGGGCATAATGATAATCTCCATCCCAAAAAATTATTGCTATCTCCGACACATATGATAGATAGTGATGCATTGAGTGTCTTGTTGGAGCAAAAGCTGCAAGAATTGACATCGAGACTTAACTTACCTCAGTGTACCGTAATCTCAGAGGAGCCTTCTACTGGTTTGAGATCTAGTTTGCAAGACAAAGCATCCAGTATGGTTAACACCAATACCATGGAACAAGATGAAATGTTCATTGATAATTTTAATAGCATGCATAACTATCGCTGTTGTTCAAGTGAGGATCCAGTGCTTAACATGAATCAGCAACTGCAGACATCAGAAGTAAGGGAAGATCATAGCTGTAGCAGCAACAATGAAAGTGGAAATGATCTAGGTTGTCAGCATTCTGATGCTAAAAATTTTCAAGCTCCTTCTGTCAGTGAAAGTTACTTGGACAGTGAAGACAGTGCATATGGCAGCACCGTTTATTCTTCCATGCTAGATGAAGAAGTATCTAATATTTCCCAGATAAACGAATCTGATTCACTTGAAAATGAAGTGACATGGTCAGATCAAAGCTCTTCCATGTCTATGGGGCAATATGTGGCTGTCACACAAATATGTGGAACACCAAACATGGTAGATTTCAAAATATCAAGCGACATGGAGCTTGAATATGTACAGAAAATACTTGGCAACACAGAGTTTATGGCAGAAGAATTTGTCATGGGTCAAACTAATTCAGTCATAATGCCAAATCTCTTTGATCTGTTGGAGAACCATCAGAGTACATCAGGTACATCATATTGTGGAGAAGATCACTCTAAGCTTGAAAGGAAGGTTTTATTTGACTATGTGAGTGAGTGCCTAGAGTTGAGATGTGAAAAAGCTTTTGTTGGAAGTTGCAAATCATGGCCTAGATGGGTGACATCAATTCAAAGGAAGGACTTTTTGGCAGATGAGTTATACAGGGAGATGATGAGTTTTAGAAACTTGGAAGATGTAATGGTGGATGAGCTTGTCTGCAATGACATGAGCACTGGATATGGGAAATGGCTTGACTTTGACATTGAAGCATTTGAAGAGGGGTCAGAGGTTGAAGGGGACATACTAGACTGTTTGATTGATGAGATGGTTTCTGATTTGTTGCTTGTTTAA

Protein sequence

>Msa1084060

MEKKRSKGSFFSLFDWNSKSRKKLVWNNQTLPEVSRQGKENLETLPESKFYRIKVDENGASPSNIVSGDFSSVCSDEGCGSKAPGLVARLMGLDSLPTSDVGELSGASLFSSNFHASHYNEGALRSMDDYRRADYLNTPLKSEKSSWDAMESRAHKMEDQSLKRFQTEMLPPKSAKPIPVTHNRLLSPIKSNGFLPPKNAAHVMEAAAKIIDGSPQPYTRNRVLSGGSSSVPLRILDLKERLEAAQHAPMSRKLVDPNNGNSSNCKPGERSSNFDKGTSSFKGSSSSSRDSEKRNYSHLTSKGKSGSPTMQAKNNVQSRDTMVSNGNRKYMKQKEPNEIKSNQLTRSQKPNTNRALPQKTCANRNGNVLVQNNQKQNSMTSKGKSTSKIDSNKPTTRVSSSESSTGVRKATNKGATNVNVQPKRSSSRAINNRKEFPPSKTHNISQKKKYDSRGVPEARSPDHERNDFESKSIKCNFTTDGSIDQNAFNMNESNDVVSFTFTSPLKRSVPESLSSAEQVMETRTRFGVDSLGHNDNLHPKKLLLSPTHMIDSDALSVLLEQKLQELTSRLNLPQCTVISEEPSTGLRSSLQDKASSMVNTNTMEQDEMFIDNFNSMHNYRCCSSEDPVLNMNQQLQTSEVREDHSCSSNNESGNDLGCQHSDAKNFQAPSVSESYLDSEDSAYGSTVYSSMLDEEVSNISQINESDSLENEVTWSDQSSSMSMGQYVAVTQICGTPNMVDFKISSDMELEYVQKILGNTEFMAEEFVMGQTNSVIMPNLFDLLENHQSTSGTSYCGEDHSKLERKVLFDYVSECLELRCEKAFVGSCKSWPRWVTSIQRKDFLADELYREMMSFRNLEDVMVDELVCNDMSTGYGKWLDFDIEAFEEGSEVEGDILDCLIDEMVSDLLLV*