AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124680 MtrunA17_Chr7g0265301 97.727 220 5 0 1 220 1 220 3.54e-158 436
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124680 AT2G36680.1 64.000 225 68 4 1 220 1 217 2.33e-94 275
Msa1124680 AT3G53120.1 67.111 225 61 3 1 220 1 217 1.43e-92 270
Msa1124680 AT2G36680.3 60.606 132 39 4 1 127 1 124 3.27e-43 143
Msa1124680 AT2G36680.4 60.606 132 39 4 1 127 1 124 3.27e-43 143
Msa1124680 AT2G36680.2 60.606 132 39 4 1 127 1 124 6.36e-43 142

Find 74 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGTACCTCTTCTTAATA+TGG 0.239168 7_3:-75844753 None:intergenic
CCAAGATGTTTCGAGGATTA+TGG 0.274182 7_3:+75840840 Msa1124680:exon
AAGTCATACCTTGAATTCTT+TGG 0.285394 7_3:-75844294 None:intergenic
CTCATTAGCAGTAGCTAATT+CGG 0.305961 7_3:-75844206 None:intergenic
ATGAACTTGCCAAGGAAAAT+AGG 0.312092 7_3:+75843749 Msa1124680:CDS
ATGGTTCCGGCGGCTTCTGC+TGG 0.332798 7_3:-75841151 None:intergenic
CGGAACCATTGCTTCTTTGA+AGG 0.372001 7_3:+75841165 Msa1124680:CDS
ATGGCGCATAACTACTCAAC+AGG 0.375445 7_3:-75844734 None:intergenic
TTAATTGATATCGTATCAAT+TGG 0.375811 7_3:+75840691 Msa1124680:five_prime_UTR
TCTCTCTGTCAAGGAGTTGC+TGG 0.377858 7_3:-75844456 None:intergenic
GTTTCTGAATTCGCTTGAAC+AGG 0.386990 7_3:+75841336 Msa1124680:CDS
TTTCAGATTCCTCATCTGTC+TGG 0.388757 7_3:-75844426 None:intergenic
TGATCAGTGTTGATGAGTTA+AGG 0.393187 7_3:+75841281 Msa1124680:intron
ATTATATGAGCCTTGACATA+TGG 0.419725 7_3:+75844568 Msa1124680:exon
CGTTTGTATCTTCGCCTCTT+CGG 0.423114 7_3:+75840778 Msa1124680:five_prime_UTR
CATGATGGAACTTAGGAATC+AGG 0.425059 7_3:+75843902 Msa1124680:CDS
TCCCTTCTCCAAAGAATTCA+AGG 0.425395 7_3:+75844286 Msa1124680:CDS
TTGCTTCTTTGAAGGATAAG+AGG 0.426022 7_3:+75841173 Msa1124680:CDS
ATCCACACAACTCATAAAAC+TGG 0.426691 7_3:-75844614 None:intergenic
CCATAATCCTCGAAACATCT+TGG 0.430059 7_3:-75840840 None:intergenic
GAAGAGGAAGCAGGTGTAGC+AGG 0.431721 7_3:-75841094 None:intergenic
TTTGTTTCTGTGAAATTTCG+AGG 0.432625 7_3:+75840750 Msa1124680:five_prime_UTR
TGTAGCAGGCCTTGATGAAC+TGG 0.440421 7_3:-75841080 None:intergenic
TTATGAATACTAGTCGCTAC+AGG 0.447462 7_3:-75844697 None:intergenic
CGGCCTCGGTGAAGCGGAAG+AGG 0.448181 7_3:-75841110 None:intergenic
TACCTTGAATTCTTTGGAGA+AGG 0.465604 7_3:-75844288 None:intergenic
CTTCAAAGAAGCAATGGTTC+CGG 0.471378 7_3:-75841164 None:intergenic
ACATGAGAAGAAGGCGGCCT+CGG 0.476768 7_3:-75841124 None:intergenic
CACGCAACCAAGATGTTTCG+AGG 0.479551 7_3:+75840833 Msa1124680:exon
ATTCTTTGGAGAAGGGATGC+AGG 0.482592 7_3:-75844280 None:intergenic
CTGGATGAACTCATGATAGA+TGG 0.484238 7_3:-75841061 None:intergenic
TACAGAGGAAAATCTACAAA+AGG 0.489564 7_3:+75843872 Msa1124680:intron
AAACAAAGGGAGAAGGAAAG+TGG 0.502675 7_3:-75840734 None:intergenic
TGTATCTTCGCCTCTTCGGT+TGG 0.507871 7_3:+75840782 Msa1124680:five_prime_UTR
CGCCATATTAAGAAGAGGTA+CGG 0.512104 7_3:+75844751 Msa1124680:three_prime_UTR
ACCTTGAATTCTTTGGAGAA+GGG 0.513047 7_3:-75844287 None:intergenic
TTCTTTGGAGAAGGGATGCA+GGG 0.513967 7_3:-75844279 None:intergenic
GATTACGCGCAGGGGATCAC+AGG 0.517722 7_3:+75840994 Msa1124680:intron
GAAGAGGCGAAGATACAAAC+GGG 0.519820 7_3:-75840776 None:intergenic
CGAAGAGGCGAAGATACAAA+CGG 0.521605 7_3:-75840777 None:intergenic
CGAAATTTCACAGAAACAAA+GGG 0.526350 7_3:-75840747 None:intergenic
GTTCCGGCGGCTTCTGCTGG+CGG 0.526949 7_3:-75841148 None:intergenic
CTTATCCTTCAAAGAAGCAA+TGG 0.534815 7_3:-75841170 None:intergenic
GGTGAAGCGGAAGAGGAAGC+AGG 0.534990 7_3:-75841103 None:intergenic
TGCCAAGGAAAATAGGCAGC+TGG 0.538132 7_3:+75843756 Msa1124680:CDS
TCGAAATTTCACAGAAACAA+AGG 0.539509 7_3:-75840748 None:intergenic
ACAAAAGGAACCTCGCATGA+TGG 0.541626 7_3:+75843887 Msa1124680:CDS
TTGTTTCTGTGAAATTTCGA+GGG 0.547278 7_3:+75840751 Msa1124680:five_prime_UTR
CGATGATACGCCAACCGAAG+AGG 0.553553 7_3:-75840792 None:intergenic
AGAAGGCGGCCTCGGTGAAG+CGG 0.557939 7_3:-75841116 None:intergenic
CTCGAAACATCTTGGTTGCG+TGG 0.565937 7_3:-75840832 None:intergenic
GCTGGCGGAACATGAGAAGA+AGG 0.566925 7_3:-75841133 None:intergenic
AAGGAAAATAGGCAGCTGGC+AGG 0.567548 7_3:+75843760 Msa1124680:CDS
AAGAGTTCTCATGTGGTAAG+TGG 0.570043 7_3:-75844521 None:intergenic
TTCACAGAAACAAAGGGAGA+AGG 0.585134 7_3:-75840741 None:intergenic
CAAGGTCAATCTCTCTGTCA+AGG 0.586704 7_3:-75844465 None:intergenic
GTTCCGCCAGCAGAAGCCGC+CGG 0.588268 7_3:+75841145 Msa1124680:CDS
AACCTCGCATGATGGAACTT+AGG 0.589339 7_3:+75843895 Msa1124680:CDS
GCTGAAAGATGAACTTGCCA+AGG 0.593928 7_3:+75843741 Msa1124680:intron
TGAGTTCATCCAGTTCATCA+AGG 0.615325 7_3:+75841071 Msa1124680:CDS
AAGCTTCATCACAGCAGTCA+TGG 0.622765 7_3:+75841032 Msa1124680:CDS
CAAAGAAGCAATGGTTCCGG+CGG 0.625125 7_3:-75841161 None:intergenic
ATCTGTGAACCAGACAGATG+AGG 0.626864 7_3:+75844417 Msa1124680:CDS
TATGAATACTAGTCGCTACA+GGG 0.629918 7_3:-75844696 None:intergenic
TGCTGTGATGAAGCTTCGTG+TGG 0.631614 7_3:-75841025 None:intergenic
TTATGCGCCATATTAAGAAG+AGG 0.632520 7_3:+75844746 Msa1124680:three_prime_UTR
TTCCTAAGTTCCATCATGCG+AGG 0.642796 7_3:-75843897 None:intergenic
GATGTATAAGAGTTCTCATG+TGG 0.646760 7_3:-75844528 None:intergenic
TCGTATCAATTGGAGCAACA+AGG 0.652004 7_3:+75840701 Msa1124680:five_prime_UTR
TCTTTGGAGAAGGGATGCAG+GGG 0.657685 7_3:-75844278 None:intergenic
GGCGGAACATGAGAAGAAGG+CGG 0.670333 7_3:-75841130 None:intergenic
GATGAACTCATGATAGATGG+TGG 0.671294 7_3:-75841058 None:intergenic
CTTCCTCTTCCGCTTCACCG+AGG 0.707613 7_3:+75841107 Msa1124680:CDS
TGGCGCATAACTACTCAACA+GGG 0.707942 7_3:-75844733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAAAATATGTATGA+AGG + chr7_3:75842149-75842168 Msa1124680:intron 10.0%
!! TAATAAAAAATATGTATGAA+GGG + chr7_3:75842150-75842169 Msa1124680:intron 10.0%
!! TTAAAAACAAAACTAAAATA+TGG - chr7_3:75844788-75844807 None:intergenic 10.0%
!!! ATTTGATTATTGTGAAATTT+TGG - chr7_3:75840926-75840945 None:intergenic 15.0%
!! AGCTAAATATTACTAAATAT+AGG - chr7_3:75841556-75841575 None:intergenic 15.0%
!!! ATTTTAGTTTTAGATATTAG+GGG - chr7_3:75841660-75841679 None:intergenic 15.0%
!!! CATTTTAGTTTTAGATATTA+GGG - chr7_3:75841661-75841680 None:intergenic 15.0%
!!! TCATTTTAGTTTTAGATATT+AGG - chr7_3:75841662-75841681 None:intergenic 15.0%
!!! ATACATGTTTTTTTAACAAA+CGG + chr7_3:75842303-75842322 Msa1124680:intron 15.0%
!! AAAAAAAAAGGGAAAAATTT+CGG + chr7_3:75842675-75842694 Msa1124680:intron 15.0%
!!! TTTTAATTTACTACATTCAA+CGG + chr7_3:75844802-75844821 Msa1124680:three_prime_UTR 15.0%
!! TTAATTGATATCGTATCAAT+TGG + chr7_3:75840691-75840710 Msa1124680:five_prime_UTR 20.0%
!! TTTAACATCAATTACTTGAT+TGG + chr7_3:75841196-75841215 Msa1124680:intron 20.0%
!! AAAAAGAATGATAATTTCCA+AGG - chr7_3:75841423-75841442 None:intergenic 20.0%
!! ATAAATCGATAAAACTCAAA+TGG + chr7_3:75841879-75841898 Msa1124680:intron 20.0%
!! CACATTACAGAAAATTAATT+TGG + chr7_3:75841962-75841981 Msa1124680:intron 20.0%
!!! AAATTAATTTGGTTTAATGC+TGG + chr7_3:75841973-75841992 Msa1124680:intron 20.0%
!!! AATTAATTTGGTTTAATGCT+GGG + chr7_3:75841974-75841993 Msa1124680:intron 20.0%
!!! TCCAAACTTCTATATTTTAT+GGG - chr7_3:75842115-75842134 None:intergenic 20.0%
!!! ATCCAAACTTCTATATTTTA+TGG - chr7_3:75842116-75842135 None:intergenic 20.0%
!! TGTTAAAAAAACATGTATCA+TGG - chr7_3:75842301-75842320 None:intergenic 20.0%
!!! GTAGAATACTGTTTTTTTTT+TGG - chr7_3:75842654-75842673 None:intergenic 20.0%
!! AGTATTCTACCAAAAAAAAA+GGG + chr7_3:75842664-75842683 Msa1124680:intron 20.0%
!!! GAAATTTTTCCCTTTTTTTT+TGG - chr7_3:75842676-75842695 None:intergenic 20.0%
!! TATTGTATGAAATTGAATGT+TGG + chr7_3:75842718-75842737 Msa1124680:intron 20.0%
!!! CTTGTGTTTTAACTATTTTA+TGG + chr7_3:75843702-75843721 Msa1124680:intron 20.0%
!! CATAATCTATTAATCAAGAT+TGG + chr7_3:75844052-75844071 Msa1124680:intron 20.0%
! GCAATAATTGGAAATTGAAA+AGG - chr7_3:75840904-75840923 None:intergenic 25.0%
!!! TGTGAAATTTTGGCAATAAT+TGG - chr7_3:75840916-75840935 None:intergenic 25.0%
!! GTTTTCTTAACTGTTAACAT+AGG + chr7_3:75841226-75841245 Msa1124680:intron 25.0%
! TAAGGATAAGAAACTTACAT+TGG - chr7_3:75841374-75841393 None:intergenic 25.0%
!! ATCCTTACTAATCTAGTTTA+TGG + chr7_3:75841387-75841406 Msa1124680:intron 25.0%
!!! TCATGTATTTCTAGTGATTT+TGG + chr7_3:75841688-75841707 Msa1124680:intron 25.0%
! AAATATGTGAATTCTTTGGA+AGG - chr7_3:75841813-75841832 None:intergenic 25.0%
! GCATAAATATGTGAATTCTT+TGG - chr7_3:75841817-75841836 None:intergenic 25.0%
!!! TTTTTTTTAGAGTAGTTGAG+CGG + chr7_3:75841921-75841940 Msa1124680:intron 25.0%
! AAGAATTACAAGCATAAACT+TGG + chr7_3:75842048-75842067 Msa1124680:intron 25.0%
!! CCAAACTTCTATATTTTATG+GGG - chr7_3:75842114-75842133 None:intergenic 25.0%
! ATAGGTTTCACTATTACTAT+AGG + chr7_3:75842205-75842224 Msa1124680:intron 25.0%
!!! CATCATTTTGTTTGATTTGA+TGG - chr7_3:75842547-75842566 None:intergenic 25.0%
! AACAAAATGATGCTAAATAG+AGG + chr7_3:75842555-75842574 Msa1124680:intron 25.0%
! ACAAAATGATGCTAAATAGA+GGG + chr7_3:75842556-75842575 Msa1124680:intron 25.0%
! CAGTATTCTACCAAAAAAAA+AGG + chr7_3:75842663-75842682 Msa1124680:intron 25.0%
! TGTGTATGATAAAAAATCCA+TGG - chr7_3:75842799-75842818 None:intergenic 25.0%
! CTTTAAATATGAATCATGAC+AGG + chr7_3:75843048-75843067 Msa1124680:intron 25.0%
! CATGGATAATGATACATAAA+AGG - chr7_3:75843367-75843386 None:intergenic 25.0%
! CATGGATAATGATACATAAA+AGG - chr7_3:75843367-75843386 None:intergenic 25.0%
! AACAAAAACACTGCTAAAAA+AGG - chr7_3:75843654-75843673 None:intergenic 25.0%
!!! TGTTTTTGTTTTTGTTCTGA+TGG + chr7_3:75843664-75843683 Msa1124680:intron 25.0%
!! TTTAACTATTTTATGGCCTA+CGG + chr7_3:75843709-75843728 Msa1124680:intron 25.0%
! AGTTCTATAACACTTATTGA+TGG - chr7_3:75843834-75843853 None:intergenic 25.0%
! CAAATTTGTCTTTAATACAG+AGG + chr7_3:75843857-75843876 Msa1124680:intron 25.0%
!! TTTTCCAAAAATTCCAATCA+GGG - chr7_3:75843958-75843977 None:intergenic 25.0%
!! ATTTTCCAAAAATTCCAATC+AGG - chr7_3:75843959-75843978 None:intergenic 25.0%
! ATCTATTAATCAAGATTGGA+CGG + chr7_3:75844056-75844075 Msa1124680:intron 25.0%
!! TTTTCATATTCCATATGTCA+AGG - chr7_3:75844581-75844600 None:intergenic 25.0%
CGAAATTTCACAGAAACAAA+GGG - chr7_3:75840750-75840769 None:intergenic 30.0%
TCGAAATTTCACAGAAACAA+AGG - chr7_3:75840751-75840770 None:intergenic 30.0%
!! TTTGTTTCTGTGAAATTTCG+AGG + chr7_3:75840750-75840769 Msa1124680:five_prime_UTR 30.0%
!! TTGTTTCTGTGAAATTTCGA+GGG + chr7_3:75840751-75840770 Msa1124680:five_prime_UTR 30.0%
CACCATAAACTAGATTAGTA+AGG - chr7_3:75841392-75841411 None:intergenic 30.0%
! CTTACTAATCTAGTTTATGG+TGG + chr7_3:75841390-75841409 Msa1124680:intron 30.0%
TTTATGGTGGTTTATTACCT+TGG + chr7_3:75841403-75841422 Msa1124680:intron 30.0%
GTATCTAGTTAGTTAGTAGT+AGG + chr7_3:75841457-75841476 Msa1124680:intron 30.0%
AGGTTGTTGAGTTTATAGAT+AGG + chr7_3:75841477-75841496 Msa1124680:intron 30.0%
!! TCTTTAGGATGTATGGATTT+GGG + chr7_3:75841518-75841537 Msa1124680:intron 30.0%
TTCATAATCACAACGTAAGA+AGG - chr7_3:75841589-75841608 None:intergenic 30.0%
AATCAAATATACAGCTTCCA+TGG - chr7_3:75842008-75842027 None:intergenic 30.0%
CCCCATAAAATATAGAAGTT+TGG + chr7_3:75842111-75842130 Msa1124680:intron 30.0%
GAAATTTGGAGAATAGAAAC+AGG + chr7_3:75842400-75842419 Msa1124680:intron 30.0%
!! TGCTTTATTTACTCCAACTT+GGG - chr7_3:75842433-75842452 None:intergenic 30.0%
!! ATGCTTTATTTACTCCAACT+TGG - chr7_3:75842434-75842453 None:intergenic 30.0%
TATGAATCATGACAGGATAT+CGG + chr7_3:75843055-75843074 Msa1124680:intron 30.0%
GTGTCAATGGAATATAAGAT+CGG + chr7_3:75843218-75843237 Msa1124680:intron 30.0%
ATGTGAAAAGGAAATTGGAA+TGG - chr7_3:75843307-75843326 None:intergenic 30.0%
TATCATTATCCATGTGACTA+TGG + chr7_3:75843403-75843422 Msa1124680:intron 30.0%
CAGTATGGTAACTATTTGTT+AGG - chr7_3:75843443-75843462 None:intergenic 30.0%
TGCTAAAAAAGGTTAAGCAT+AGG - chr7_3:75843643-75843662 None:intergenic 30.0%
!!! TTTTGTTTTTGTTCTGATGG+TGG + chr7_3:75843667-75843686 Msa1124680:intron 30.0%
TACAGAGGAAAATCTACAAA+AGG + chr7_3:75843872-75843891 Msa1124680:intron 30.0%
TTTCCAAAAATTCCAATCAG+GGG - chr7_3:75843957-75843976 None:intergenic 30.0%
! AAATGAGTTTTCTGCAGTTA+AGG + chr7_3:75843975-75843994 Msa1124680:intron 30.0%
CCAAAATCTTATGCAGATTA+CGG + chr7_3:75844135-75844154 Msa1124680:intron 30.0%
TTATTCTACACTGTTTCACA+AGG - chr7_3:75844177-75844196 None:intergenic 30.0%
AAGTCATACCTTGAATTCTT+TGG - chr7_3:75844297-75844316 None:intergenic 30.0%
ACAACTTATTGCAATAGTTC+TGG + chr7_3:75844325-75844344 Msa1124680:intron 30.0%
!!! TTTTTTCACTATTACGACGA+AGG + chr7_3:75844357-75844376 Msa1124680:intron 30.0%
ATTATATGAGCCTTGACATA+TGG + chr7_3:75844568-75844587 Msa1124680:exon 30.0%
! ATTCAACGGTATTTTTCTGA+AGG + chr7_3:75844816-75844835 Msa1124680:three_prime_UTR 30.0%
CTTATCCTTCAAAGAAGCAA+TGG - chr7_3:75841173-75841192 None:intergenic 35.0%
! TTGCTTCTTTGAAGGATAAG+AGG + chr7_3:75841173-75841192 Msa1124680:CDS 35.0%
!! TGATCAGTGTTGATGAGTTA+AGG + chr7_3:75841281-75841300 Msa1124680:intron 35.0%
CATCAGATTCTGATGTCTTT+AGG + chr7_3:75841503-75841522 Msa1124680:intron 35.0%
!! TCTGATGTCTTTAGGATGTA+TGG + chr7_3:75841511-75841530 Msa1124680:intron 35.0%
!! GTCTTTAGGATGTATGGATT+TGG + chr7_3:75841517-75841536 Msa1124680:intron 35.0%
! TTCTAGTGATTTTGGATGTG+AGG + chr7_3:75841696-75841715 Msa1124680:intron 35.0%
! TCTTTGGAAGGATTAAGCAT+CGG - chr7_3:75841801-75841820 None:intergenic 35.0%
ATATTTATGCCACTAACTGC+AGG + chr7_3:75841827-75841846 Msa1124680:intron 35.0%
AAAATAGATCCTGCAGTTAG+TGG - chr7_3:75841839-75841858 None:intergenic 35.0%
! AATTTGGTTTAATGCTGGGA+TGG + chr7_3:75841978-75841997 Msa1124680:intron 35.0%
! ACAACTAATGTAAGAGCACA+AGG + chr7_3:75842175-75842194 Msa1124680:intron 35.0%
!! CACTAAAAGTGTTTACCTTG+CGG - chr7_3:75842517-75842536 None:intergenic 35.0%
!! TAGAGGGTGTTGTCAATTAT+AGG + chr7_3:75842572-75842591 Msa1124680:intron 35.0%
ACAGTATCACTCAAGCTTAA+AGG + chr7_3:75842612-75842631 Msa1124680:intron 35.0%
CAGTATCACTCAAGCTTAAA+GGG + chr7_3:75842613-75842632 Msa1124680:intron 35.0%
TTGAGATGAGAATGTTACCA+TGG + chr7_3:75842779-75842798 Msa1124680:intron 35.0%
TAGCTCGTATTGTAGAAAGA+TGG + chr7_3:75842863-75842882 Msa1124680:intron 35.0%
!! TGTAGAAAGATGGTTTGCTT+AGG + chr7_3:75842873-75842892 Msa1124680:intron 35.0%
TTCTTCATCAGTGCTTCTTT+GGG - chr7_3:75842923-75842942 None:intergenic 35.0%
TGATGAAGAAGGTTGTAGAA+TGG + chr7_3:75842933-75842952 Msa1124680:intron 35.0%
GGAGGATAATCTCTATTTAG+AGG + chr7_3:75842954-75842973 Msa1124680:intron 35.0%
AGAGGTAAAAGCCTAAAAGA+TGG + chr7_3:75842972-75842991 Msa1124680:intron 35.0%
GAGGTAAAAGCCTAAAAGAT+GGG + chr7_3:75842973-75842992 Msa1124680:intron 35.0%
! TGTTGTTATTGTTGCAGTGA+TGG + chr7_3:75843131-75843150 Msa1124680:intron 35.0%
! GAATGTTGATGTGTGTTGAT+AGG + chr7_3:75843175-75843194 Msa1124680:intron 35.0%
TATCACTGAATCTGTGTCAA+TGG + chr7_3:75843205-75843224 Msa1124680:intron 35.0%
AAATTGGAATGGAAAGAACC+AGG - chr7_3:75843296-75843315 None:intergenic 35.0%
GAGACATGTGAAAAGGAAAT+TGG - chr7_3:75843312-75843331 None:intergenic 35.0%
!! AGTTTGTTACCATAGTCACA+TGG - chr7_3:75843415-75843434 None:intergenic 35.0%
TGTGACTATGGTAACAAACT+TGG + chr7_3:75843415-75843434 Msa1124680:intron 35.0%
GTGACTATGGTAACAAACTT+GGG + chr7_3:75843416-75843435 Msa1124680:intron 35.0%
! GAGTTTGACTCTTTTCAGTA+TGG - chr7_3:75843458-75843477 None:intergenic 35.0%
ATGAACTTGCCAAGGAAAAT+AGG + chr7_3:75843749-75843768 Msa1124680:CDS 35.0%
TTAGGAATCAGGTAAGATCA+CGG + chr7_3:75843913-75843932 Msa1124680:intron 35.0%
AGGGGAAAAAACTAATCACA+GGG - chr7_3:75843939-75843958 None:intergenic 35.0%
!!! GATTAGTTTTTTCCCCTGAT+TGG + chr7_3:75843942-75843961 Msa1124680:intron 35.0%
! TTTCCCCTGATTGGAATTTT+TGG + chr7_3:75843951-75843970 Msa1124680:intron 35.0%
! CCGTAATCTGCATAAGATTT+TGG - chr7_3:75844138-75844157 None:intergenic 35.0%
CTCATTAGCAGTAGCTAATT+CGG - chr7_3:75844209-75844228 None:intergenic 35.0%
! ACCTTGAATTCTTTGGAGAA+GGG - chr7_3:75844290-75844309 None:intergenic 35.0%
! TACCTTGAATTCTTTGGAGA+AGG - chr7_3:75844291-75844310 None:intergenic 35.0%
!! ACTTATTGCAATAGTTCTGG+TGG + chr7_3:75844328-75844347 Msa1124680:intron 35.0%
ATTTCTGCAAAAAAGCTGCA+AGG - chr7_3:75844486-75844505 None:intergenic 35.0%
GATGTATAAGAGTTCTCATG+TGG - chr7_3:75844531-75844550 None:intergenic 35.0%
!! AACCAGTTTTATGAGTTGTG+TGG + chr7_3:75844612-75844631 Msa1124680:three_prime_UTR 35.0%
ATCCACACAACTCATAAAAC+TGG - chr7_3:75844617-75844636 None:intergenic 35.0%
TATGAATACTAGTCGCTACA+GGG - chr7_3:75844699-75844718 None:intergenic 35.0%
TTATGAATACTAGTCGCTAC+AGG - chr7_3:75844700-75844719 None:intergenic 35.0%
TTATGCGCCATATTAAGAAG+AGG + chr7_3:75844746-75844765 Msa1124680:three_prime_UTR 35.0%
TTCCGTACCTCTTCTTAATA+TGG - chr7_3:75844756-75844775 None:intergenic 35.0%
TCGTATCAATTGGAGCAACA+AGG + chr7_3:75840701-75840720 Msa1124680:five_prime_UTR 40.0%
AAACAAAGGGAGAAGGAAAG+TGG - chr7_3:75840737-75840756 None:intergenic 40.0%
TTCACAGAAACAAAGGGAGA+AGG - chr7_3:75840744-75840763 None:intergenic 40.0%
CCATAATCCTCGAAACATCT+TGG - chr7_3:75840843-75840862 None:intergenic 40.0%
CCAAGATGTTTCGAGGATTA+TGG + chr7_3:75840840-75840859 Msa1124680:exon 40.0%
GATGAACTCATGATAGATGG+TGG - chr7_3:75841061-75841080 None:intergenic 40.0%
CTGGATGAACTCATGATAGA+TGG - chr7_3:75841064-75841083 None:intergenic 40.0%
TGAGTTCATCCAGTTCATCA+AGG + chr7_3:75841071-75841090 Msa1124680:CDS 40.0%
CTTCAAAGAAGCAATGGTTC+CGG - chr7_3:75841167-75841186 None:intergenic 40.0%
GTTTCTGAATTCGCTTGAAC+AGG + chr7_3:75841336-75841355 Msa1124680:CDS 40.0%
! TGATTTTGGATGTGAGGAAG+AGG + chr7_3:75841702-75841721 Msa1124680:intron 40.0%
! ACTAATGTAAGAGCACAAGG+TGG + chr7_3:75842178-75842197 Msa1124680:intron 40.0%
AGAGCACAAGGTGGAAATAT+AGG + chr7_3:75842187-75842206 Msa1124680:intron 40.0%
TTACTATAGGTGTGCATCGA+AGG + chr7_3:75842218-75842237 Msa1124680:intron 40.0%
TTGGAGAATCGAGAGATTCA+TGG + chr7_3:75842361-75842380 Msa1124680:intron 40.0%
AGAAACACTCAAATACCAGC+AGG + chr7_3:75842466-75842485 Msa1124680:intron 40.0%
GAAACACTCAAATACCAGCA+GGG + chr7_3:75842467-75842486 Msa1124680:intron 40.0%
AAACACTCAAATACCAGCAG+GGG + chr7_3:75842468-75842487 Msa1124680:intron 40.0%
TATCACTCGAGAAACAGTAG+AGG + chr7_3:75842840-75842859 Msa1124680:intron 40.0%
!! AGAAAGATGGTTTGCTTAGG+TGG + chr7_3:75842876-75842895 Msa1124680:intron 40.0%
CTTCTTCATCAGTGCTTCTT+TGG - chr7_3:75842924-75842943 None:intergenic 40.0%
!! CAAAGAAGCACTGATGAAGA+AGG + chr7_3:75842922-75842941 Msa1124680:intron 40.0%
TGAAGAAGGTTGTAGAATGG+AGG + chr7_3:75842936-75842955 Msa1124680:intron 40.0%
AAAAGCCTAAAAGATGGGCA+TGG + chr7_3:75842978-75842997 Msa1124680:intron 40.0%
! GTTTTCCATGCCCATCTTTT+AGG - chr7_3:75842986-75843005 None:intergenic 40.0%
GGAATATAAGATCGGACATG+CGG + chr7_3:75843226-75843245 Msa1124680:intron 40.0%
! GATGAAGCGTTAGTTAAGGT+CGG - chr7_3:75843337-75843356 None:intergenic 40.0%
! GAGAGATGAAGCGTTAGTTA+AGG - chr7_3:75843341-75843360 None:intergenic 40.0%
TACATAAAAGGAGAGTCGCA+TGG - chr7_3:75843385-75843404 None:intergenic 40.0%
ATAGTCCGCAGACATGTATT+GGG - chr7_3:75843513-75843532 None:intergenic 40.0%
AATAGTCCGCAGACATGTAT+TGG - chr7_3:75843514-75843533 None:intergenic 40.0%
AAAACTTCAGCACACTCGTA+CGG - chr7_3:75843606-75843625 None:intergenic 40.0%
TTTCAGCTGATCATATCCGT+AGG - chr7_3:75843728-75843747 None:intergenic 40.0%
! CATGATGGAACTTAGGAATC+AGG + chr7_3:75843902-75843921 Msa1124680:CDS 40.0%
CAGGGGAAAAAACTAATCAC+AGG - chr7_3:75843940-75843959 None:intergenic 40.0%
TTCTACACTGTTTCACAAGG+AGG - chr7_3:75844174-75844193 None:intergenic 40.0%
TCCCTTCTCCAAAGAATTCA+AGG + chr7_3:75844286-75844305 Msa1124680:CDS 40.0%
TTTCAGATTCCTCATCTGTC+TGG - chr7_3:75844429-75844448 None:intergenic 40.0%
AAGAGTTCTCATGTGGTAAG+TGG - chr7_3:75844524-75844543 None:intergenic 40.0%
CGCCATATTAAGAAGAGGTA+CGG + chr7_3:75844751-75844770 Msa1124680:three_prime_UTR 40.0%
GAAGAGGCGAAGATACAAAC+GGG - chr7_3:75840779-75840798 None:intergenic 45.0%
CGAAGAGGCGAAGATACAAA+CGG - chr7_3:75840780-75840799 None:intergenic 45.0%
CGTTTGTATCTTCGCCTCTT+CGG + chr7_3:75840778-75840797 Msa1124680:five_prime_UTR 45.0%
! TGTTGTTGTTGATTACGCGC+AGG + chr7_3:75840984-75841003 Msa1124680:intron 45.0%
! GTTGTTGTTGATTACGCGCA+GGG + chr7_3:75840985-75841004 Msa1124680:intron 45.0%
! TTGTTGTTGATTACGCGCAG+GGG + chr7_3:75840986-75841005 Msa1124680:intron 45.0%
AAGCTTCATCACAGCAGTCA+TGG + chr7_3:75841032-75841051 Msa1124680:CDS 45.0%
CGGAACCATTGCTTCTTTGA+AGG + chr7_3:75841165-75841184 Msa1124680:CDS 45.0%
AATCCTTCCAACCTGTAGCT+AGG + chr7_3:75841739-75841758 Msa1124680:intron 45.0%
! ATTCCTAGCTACAGGTTGGA+AGG - chr7_3:75841745-75841764 None:intergenic 45.0%
AGATTGGGATTCCTAGCTAC+AGG - chr7_3:75841753-75841772 None:intergenic 45.0%
AGCTAGGAATCCCAATCTGT+AGG + chr7_3:75841755-75841774 Msa1124680:intron 45.0%
GCTAGGAATCCCAATCTGTA+GGG + chr7_3:75841756-75841775 Msa1124680:intron 45.0%
!! TAAGCATCGGCCTGCATTAT+AGG - chr7_3:75841788-75841807 None:intergenic 45.0%
TATCGAGCAGACACAAGAGA+TGG + chr7_3:75842273-75842292 Msa1124680:intron 45.0%
AGAGAATACACTATGCCGCA+AGG + chr7_3:75842499-75842518 Msa1124680:intron 45.0%
!! GATGGTTTGCTTAGGTGGTT+TGG + chr7_3:75842881-75842900 Msa1124680:intron 45.0%
AGATGGGCATGGAAAACGAT+AGG + chr7_3:75842989-75843008 Msa1124680:intron 45.0%
ATCCATGTACCTAACCCCAT+TGG + chr7_3:75843089-75843108 Msa1124680:intron 45.0%
! AAGCCTTTTCCCACACCAAT+GGG - chr7_3:75843107-75843126 None:intergenic 45.0%
! AAAGCCTTTTCCCACACCAA+TGG - chr7_3:75843108-75843127 None:intergenic 45.0%
ATTGGTGTGGGAAAAGGCTT+TGG + chr7_3:75843107-75843126 Msa1124680:intron 45.0%
TGCAATAAACCCCCTGTTCT+AGG + chr7_3:75843259-75843278 Msa1124680:intron 45.0%
TGCCTCAAATGCCTAGAACA+GGG - chr7_3:75843273-75843292 None:intergenic 45.0%
GTCGGTTGAGACATGTGAAA+AGG - chr7_3:75843319-75843338 None:intergenic 45.0%
GACATCCCAATACATGTCTG+CGG + chr7_3:75843505-75843524 Msa1124680:intron 45.0%
ACTGTGCTCTACTGTACAGT+TGG + chr7_3:75843578-75843597 Msa1124680:intron 45.0%
AAACTTCAGCACACTCGTAC+GGG - chr7_3:75843605-75843624 None:intergenic 45.0%
GCTGAAAGATGAACTTGCCA+AGG + chr7_3:75843741-75843760 Msa1124680:intron 45.0%
ACAAAAGGAACCTCGCATGA+TGG + chr7_3:75843887-75843906 Msa1124680:CDS 45.0%
! AACCTCGCATGATGGAACTT+AGG + chr7_3:75843895-75843914 Msa1124680:CDS 45.0%
TTCCTAAGTTCCATCATGCG+AGG - chr7_3:75843900-75843919 None:intergenic 45.0%
! TTCTTTGGAGAAGGGATGCA+GGG - chr7_3:75844282-75844301 None:intergenic 45.0%
! ATTCTTTGGAGAAGGGATGC+AGG - chr7_3:75844283-75844302 None:intergenic 45.0%
TCACTATTACGACGAAGGCT+AGG + chr7_3:75844362-75844381 Msa1124680:intron 45.0%
ATCTGTGAACCAGACAGATG+AGG + chr7_3:75844417-75844436 Msa1124680:CDS 45.0%
CAAGGTCAATCTCTCTGTCA+AGG - chr7_3:75844468-75844487 None:intergenic 45.0%
TGGCGCATAACTACTCAACA+GGG - chr7_3:75844736-75844755 None:intergenic 45.0%
ATGGCGCATAACTACTCAAC+AGG - chr7_3:75844737-75844756 None:intergenic 45.0%
!! AAATTATTAAATTAGAAATT+TGG + chr7_3:75842342-75842361 Msa1124680:intron 5.0%
!! AAATAATTAAATTAGAAATT+TGG + chr7_3:75842386-75842405 Msa1124680:intron 5.0%
TGTATCTTCGCCTCTTCGGT+TGG + chr7_3:75840782-75840801 Msa1124680:five_prime_UTR 50.0%
CTCGAAACATCTTGGTTGCG+TGG - chr7_3:75840835-75840854 None:intergenic 50.0%
CACGCAACCAAGATGTTTCG+AGG + chr7_3:75840833-75840852 Msa1124680:exon 50.0%
TGCTGTGATGAAGCTTCGTG+TGG - chr7_3:75841028-75841047 None:intergenic 50.0%
TGTAGCAGGCCTTGATGAAC+TGG - chr7_3:75841083-75841102 None:intergenic 50.0%
CAAAGAAGCAATGGTTCCGG+CGG - chr7_3:75841164-75841183 None:intergenic 50.0%
GATATTAGGGGTGACTCGCA+AGG - chr7_3:75841648-75841667 None:intergenic 50.0%
TGGGATTCCTAGCTACAGGT+TGG - chr7_3:75841749-75841768 None:intergenic 50.0%
! AGGCACTGTCCCTACAGATT+GGG - chr7_3:75841768-75841787 None:intergenic 50.0%
! TAGGCACTGTCCCTACAGAT+TGG - chr7_3:75841769-75841788 None:intergenic 50.0%
AGGGACAGTGCCTATAATGC+AGG + chr7_3:75841775-75841794 Msa1124680:intron 50.0%
AATGCTGGGATGGTCAACCA+TGG + chr7_3:75841988-75842007 Msa1124680:intron 50.0%
GAAGTTACCTAGACGTGCTG+CGG + chr7_3:75842084-75842103 Msa1124680:intron 50.0%
AAGTTACCTAGACGTGCTGC+GGG + chr7_3:75842085-75842104 Msa1124680:intron 50.0%
AACAGGACTTCTGCCCAAGT+TGG + chr7_3:75842417-75842436 Msa1124680:intron 50.0%
! TCTCTGATTTTCACCCCTGC+TGG - chr7_3:75842484-75842503 None:intergenic 50.0%
CACCAATGGGGTTAGGTACA+TGG - chr7_3:75843094-75843113 None:intergenic 50.0%
TGTACCTAACCCCATTGGTG+TGG + chr7_3:75843094-75843113 Msa1124680:intron 50.0%
GTACCTAACCCCATTGGTGT+GGG + chr7_3:75843095-75843114 Msa1124680:intron 50.0%
TTTCCCACACCAATGGGGTT+AGG - chr7_3:75843101-75843120 None:intergenic 50.0%
AACCCCATTGGTGTGGGAAA+AGG + chr7_3:75843101-75843120 Msa1124680:intron 50.0%
! AGCCTTTTCCCACACCAATG+GGG - chr7_3:75843106-75843125 None:intergenic 50.0%
CCTCAAATGCCTAGAACAGG+GGG - chr7_3:75843271-75843290 None:intergenic 50.0%
GCCTCAAATGCCTAGAACAG+GGG - chr7_3:75843272-75843291 None:intergenic 50.0%
GTGCCTCAAATGCCTAGAAC+AGG - chr7_3:75843274-75843293 None:intergenic 50.0%
! TTCTAGGCATTTGAGGCACC+TGG + chr7_3:75843275-75843294 Msa1124680:intron 50.0%
TGCCAAGGAAAATAGGCAGC+TGG + chr7_3:75843756-75843775 Msa1124680:CDS 50.0%
! TGCCAGCTGCCTATTTTCCT+TGG - chr7_3:75843761-75843780 None:intergenic 50.0%
AAGGAAAATAGGCAGCTGGC+AGG + chr7_3:75843760-75843779 Msa1124680:CDS 50.0%
! TCTGCTGACTGTGTGAATGC+AGG + chr7_3:75844085-75844104 Msa1124680:intron 50.0%
GTGTGAATGCAGGAGATCAC+TGG + chr7_3:75844095-75844114 Msa1124680:intron 50.0%
! TCTTTGGAGAAGGGATGCAG+GGG - chr7_3:75844281-75844300 None:intergenic 50.0%
TCTCTCTGTCAAGGAGTTGC+TGG - chr7_3:75844459-75844478 None:intergenic 50.0%
CGATGATACGCCAACCGAAG+AGG - chr7_3:75840795-75840814 None:intergenic 55.0%
GAAGAGGAAGCAGGTGTAGC+AGG - chr7_3:75841097-75841116 None:intergenic 55.0%
ACATGAGAAGAAGGCGGCCT+CGG - chr7_3:75841127-75841146 None:intergenic 55.0%
GGCGGAACATGAGAAGAAGG+CGG - chr7_3:75841133-75841152 None:intergenic 55.0%
GCTGGCGGAACATGAGAAGA+AGG - chr7_3:75841136-75841155 None:intergenic 55.0%
GGGGTGACTCGCAAGGAAAA+AGG - chr7_3:75841641-75841660 None:intergenic 55.0%
! CCCCCTGTTCTAGGCATTTG+AGG + chr7_3:75843268-75843287 Msa1124680:intron 55.0%
! TGCAGGAGATCACTGGCTAC+AGG + chr7_3:75844102-75844121 Msa1124680:intron 55.0%
! GCAGGAGATCACTGGCTACA+GGG + chr7_3:75844103-75844122 Msa1124680:intron 55.0%
! CAGGAGATCACTGGCTACAG+GGG + chr7_3:75844104-75844123 Msa1124680:intron 55.0%
GATTACGCGCAGGGGATCAC+AGG + chr7_3:75840994-75841013 Msa1124680:intron 60.0%
GGTGAAGCGGAAGAGGAAGC+AGG - chr7_3:75841106-75841125 None:intergenic 60.0%
CTTCCTCTTCCGCTTCACCG+AGG + chr7_3:75841107-75841126 Msa1124680:CDS 60.0%
TTACCTAGACGTGCTGCGGG+AGG + chr7_3:75842088-75842107 Msa1124680:intron 60.0%
AGAAGGCGGCCTCGGTGAAG+CGG - chr7_3:75841119-75841138 None:intergenic 65.0%
ATGGTTCCGGCGGCTTCTGC+TGG - chr7_3:75841154-75841173 None:intergenic 65.0%
CGGCCTCGGTGAAGCGGAAG+AGG - chr7_3:75841113-75841132 None:intergenic 70.0%
GTTCCGCCAGCAGAAGCCGC+CGG + chr7_3:75841145-75841164 Msa1124680:CDS 70.0%
GTTCCGGCGGCTTCTGCTGG+CGG - chr7_3:75841151-75841170 None:intergenic 70.0%
GGGCCTCCCGCAGCACGTCT+AGG - chr7_3:75842094-75842113 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75840671 75844871 75840671 ID=Msa1124680;Name=Msa1124680
chr7_3 mRNA 75840671 75844871 75840671 ID=Msa1124680-mRNA-1;Parent=Msa1124680;Name=Msa1124680-mRNA-1;_AED=0.22;_eAED=0.22;_QI=174|1|1|1|1|1|7|295|220
chr7_3 exon 75840671 75840861 75840671 ID=Msa1124680-mRNA-1:exon:20524;Parent=Msa1124680-mRNA-1
chr7_3 exon 75841006 75841194 75841006 ID=Msa1124680-mRNA-1:exon:20525;Parent=Msa1124680-mRNA-1
chr7_3 exon 75841288 75841375 75841288 ID=Msa1124680-mRNA-1:exon:20526;Parent=Msa1124680-mRNA-1
chr7_3 exon 75843742 75843781 75843742 ID=Msa1124680-mRNA-1:exon:20527;Parent=Msa1124680-mRNA-1
chr7_3 exon 75843877 75843923 75843877 ID=Msa1124680-mRNA-1:exon:20528;Parent=Msa1124680-mRNA-1
chr7_3 exon 75844187 75844307 75844187 ID=Msa1124680-mRNA-1:exon:20529;Parent=Msa1124680-mRNA-1
chr7_3 exon 75844416 75844871 75844416 ID=Msa1124680-mRNA-1:exon:20530;Parent=Msa1124680-mRNA-1
chr7_3 five_prime_UTR 75840671 75840844 75840671 ID=Msa1124680-mRNA-1:five_prime_utr;Parent=Msa1124680-mRNA-1
chr7_3 CDS 75840845 75840861 75840845 ID=Msa1124680-mRNA-1:cds;Parent=Msa1124680-mRNA-1
chr7_3 CDS 75841006 75841194 75841006 ID=Msa1124680-mRNA-1:cds;Parent=Msa1124680-mRNA-1
chr7_3 CDS 75841288 75841375 75841288 ID=Msa1124680-mRNA-1:cds;Parent=Msa1124680-mRNA-1
chr7_3 CDS 75843742 75843781 75843742 ID=Msa1124680-mRNA-1:cds;Parent=Msa1124680-mRNA-1
chr7_3 CDS 75843877 75843923 75843877 ID=Msa1124680-mRNA-1:cds;Parent=Msa1124680-mRNA-1
chr7_3 CDS 75844187 75844307 75844187 ID=Msa1124680-mRNA-1:cds;Parent=Msa1124680-mRNA-1
chr7_3 CDS 75844416 75844576 75844416 ID=Msa1124680-mRNA-1:cds;Parent=Msa1124680-mRNA-1
chr7_3 three_prime_UTR 75844577 75844871 75844577 ID=Msa1124680-mRNA-1:three_prime_utr;Parent=Msa1124680-mRNA-1
Gene Sequence

>Msa1124680

ATGTTTCGAGGATTATGGGGATCACAGGAGCAACAACCACACGAAGCTTCATCACAGCAGTCATGGTATCCACCATCTATCATGAGTTCATCCAGTTCATCAAGGCCTGCTACACCTGCTTCCTCTTCCGCTTCACCGAGGCCGCCTTCTTCTCATGTTCCGCCAGCAGAAGCCGCCGGAACCATTGCTTCTTTGAAGGATAAGAGTGTTGATGAGTTAAGGAAGCTTTTGTCTGATAAAGATGCTTATCAACAGTTTCTGAATTCGCTTGAACAGGTCAAGATTCAAACCAATCTGAAAGATGAACTTGCCAAGGAAAATAGGCAGCTGGCAGAGGAAAATCTACAAAAGGAACCTCGCATGATGGAACTTAGGAATCAGTGTAGAATAATTCGTACAACCGAATTAGCTACTGCTAATGAGAAACTAAACGAGCTTGAGAAGCAAAAAGAAGAAATGTTAAAGATGAATTCCCCTGCATCCCTTCTCCAAAGAATTCAAGAATCTGTGAACCAGACAGATGAGGAATCTGAAAATCTGCACCAGCAACTCCTTGACAGAGAGATTGACCTTGCAGCTTTTTTGCAGAAATACAAGAAGCTACGCACCACTTACCACATGAGAACTCTTATACATCTTGCTGCTAAAACATCAATTATATGA

Protein sequence

>Msa1124680

MFRGLWGSQEQQPHEASSQQSWYPPSIMSSSSSSRPATPASSSASPRPPSSHVPPAEAAGTIASLKDKSVDELRKLLSDKDAYQQFLNSLEQVKIQTNLKDELAKENRQLAEENLQKEPRMMELRNQCRIIRTTELATANEKLNELEKQKEEMLKMNSPASLLQRIQESVNQTDEESENLHQQLLDREIDLAAFLQKYKKLRTTYHMRTLIHLAAKTSII*