AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1242240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242240 MtrunA17_Chr8g0355641 96.815 157 5 0 1 157 1 157 1.17e-111 313
Msa1242240 MtrunA17_Chr8g0355741 75.641 156 38 0 1 156 1 156 3.17e-86 249
Msa1242240 MtrunA17_Chr8g0355721 70.513 156 45 1 1 156 1 155 9.16e-83 240
Msa1242240 MtrunA17_Chr8g0355781 71.523 151 43 0 1 151 1 151 1.10e-81 238
Msa1242240 MtrunA17_Chr8g0355661 69.231 156 47 1 1 156 1 155 3.05e-79 231
Msa1242240 MtrunA17_Chr8g0355761 68.874 151 47 0 1 151 1 151 6.27e-78 228
Msa1242240 MtrunA17_Chr8g0355811 66.026 156 52 1 1 156 1 155 5.62e-77 226
Msa1242240 MtrunA17_Chr8g0355821 66.452 155 51 1 1 155 1 154 6.40e-75 221
Msa1242240 MtrunA17_Chr8g0355791 63.462 156 56 1 1 156 1 155 3.67e-71 211
Msa1242240 MtrunA17_Chr8g0355801 63.462 156 56 1 1 156 1 155 6.27e-71 210
Msa1242240 MtrunA17_Chr8g0355771 62.821 156 57 1 1 156 1 155 3.66e-70 208
Msa1242240 MtrunA17_Chr1g0160371 42.208 154 86 2 1 152 1 153 6.52e-38 127
Msa1242240 MtrunA17_Chr1g0160381 39.610 154 90 2 1 152 5 157 2.83e-36 122
Msa1242240 MtrunA17_Chr8g0339261 32.667 150 98 3 6 154 8 155 5.19e-26 96.7
Msa1242240 MtrunA17_Chr1g0160351 46.739 92 47 1 63 152 3 94 2.16e-22 85.5
Msa1242240 MtrunA17_Chr1g0160391 32.692 156 97 4 1 149 1 155 1.17e-21 85.5
Msa1242240 MtrunA17_Chr1g0160801 34.694 147 87 5 7 151 7 146 6.34e-21 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242240 AT5G28010.1 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1242240 AT5G28010.2 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1242240 AT1G70830.5 32.237 152 100 3 3 152 22 172 7.46e-22 86.7
Msa1242240 AT1G70830.3 32.237 152 100 3 3 152 22 172 1.55e-21 86.7
Msa1242240 AT1G70840.1 31.579 152 101 3 3 152 20 170 4.39e-21 84.7
Msa1242240 AT1G70830.2 32.237 152 100 3 3 152 22 172 4.44e-21 86.7
Msa1242240 AT1G70830.1 32.237 152 100 3 3 152 22 172 1.29e-20 86.7
Msa1242240 AT1G70830.1 30.921 152 102 3 3 152 184 334 4.03e-19 82.4
Msa1242240 AT1G70890.1 30.921 152 102 3 3 152 7 157 2.32e-20 82.4
Msa1242240 AT1G70830.4 30.921 152 102 3 3 152 137 287 1.91e-19 82.8
Msa1242240 AT1G70850.2 30.667 150 101 3 3 150 9 157 4.38e-19 80.9
Msa1242240 AT1G70850.3 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1242240 AT1G70850.3 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1242240 AT1G70850.1 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1242240 AT1G70850.1 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1242240 AT1G23120.1 28.105 153 105 3 1 153 1 148 1.99e-18 77.0
Msa1242240 AT1G23120.2 28.758 153 102 4 3 153 51 198 1.17e-17 76.3
Msa1242240 AT1G23130.1 27.152 151 108 2 3 152 10 159 6.07e-17 73.6
Msa1242240 AT5G28000.1 28.947 152 105 3 3 152 13 163 1.68e-16 72.4
Msa1242240 AT1G70870.1 32.450 151 89 4 1 151 1 138 1.73e-16 72.0
Msa1242240 AT4G23670.1 29.605 152 104 3 1 151 1 150 6.06e-16 70.9
Msa1242240 AT1G70880.1 25.658 152 110 3 3 152 8 158 3.24e-15 68.9
Msa1242240 AT1G24020.1 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1242240 AT1G24020.2 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1242240 AT2G01520.1 27.632 152 107 3 1 151 1 150 1.41e-14 67.4
Msa1242240 AT1G14930.1 26.974 152 108 3 1 151 1 150 6.82e-14 65.5
Msa1242240 AT2G01530.1 28.289 152 106 3 1 151 1 150 1.73e-13 64.3
Msa1242240 AT1G35260.1 27.517 149 98 4 7 150 6 149 6.52e-13 62.8
Msa1242240 AT1G35310.1 26.761 142 101 3 13 153 12 151 9.94e-13 62.4
Msa1242240 AT4G14060.1 26.974 152 108 3 1 151 1 150 1.28e-12 62.0
Msa1242240 AT4G23680.1 25.658 152 110 3 1 151 1 150 2.61e-12 61.2
Msa1242240 AT1G30990.1 27.815 151 105 4 1 150 1 148 1.22e-11 59.7
Msa1242240 AT1G14940.1 26.490 151 108 3 1 150 1 149 1.45e-11 59.3

Find 41 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACGTTCTTATGACTTA+TGG 0.201432 8_2:-26409023 None:intergenic
GATTATGTTTCTTGGAAATT+AGG 0.208750 8_2:+26409303 Msa1242240:three_prime_UTR
GGTAAACTTAGCACTGAAAT+TGG 0.239596 8_2:+26407547 Msa1242240:CDS
TCATGTTTGATTATGTTTCT+TGG 0.260153 8_2:+26409295 Msa1242240:three_prime_UTR
AGGTATTCCATCCAACTATT+TGG 0.260874 8_2:-26408945 None:intergenic
GTGTTTGTGTCTTCAATAAA+TGG 0.262059 8_2:+26409189 Msa1242240:three_prime_UTR
ATGGCACTACTGCAGTTAAA+TGG 0.307509 8_2:+26408883 Msa1242240:CDS
GGCATATTGCATATGCATAT+TGG 0.310006 8_2:+26409119 Msa1242240:three_prime_UTR
GAATGTTATATTCATAGTTT+TGG 0.318064 8_2:+26409267 Msa1242240:three_prime_UTR
TTTGCTAGGATTAGATATAA+AGG 0.351282 8_2:-26409363 None:intergenic
GAAAGAGAAGAAAGAAAGAA+AGG 0.382578 8_2:-26407488 None:intergenic
AGGATTAGATATAAAGGATA+GGG 0.417608 8_2:-26409357 None:intergenic
TTCATCACCTTGATGCAGCT+TGG 0.437287 8_2:-26407656 None:intergenic
GTAAACTTAGCACTGAAATT+GGG 0.446714 8_2:+26407548 Msa1242240:CDS
AAAGAGAAGAAAGAAAGAAA+GGG 0.450377 8_2:-26407487 None:intergenic
TAGGCAACAGATGAAGTAAT+CGG 0.462518 8_2:+26409322 Msa1242240:three_prime_UTR
AGAAATTGATGAGCACTATA+AGG 0.468901 8_2:+26408824 Msa1242240:CDS
AAAATCGTCCACAAGATCTT+CGG 0.479675 8_2:+26408798 Msa1242240:CDS
ACAAATGAATAGTAATGTAA+TGG 0.498210 8_2:+26409043 Msa1242240:three_prime_UTR
TTAGGGTAAGCATGTTTGCT+AGG 0.500055 8_2:-26409377 None:intergenic
TAATGTAATGGCTTAATGCA+TGG 0.501070 8_2:+26409055 Msa1242240:three_prime_UTR
TATTCCATCCAACTATTTGG+AGG 0.505271 8_2:-26408942 None:intergenic
AGCTGCATCAAGGTGATGAA+TGG 0.510022 8_2:+26407659 Msa1242240:CDS
TTTCTTCACCGAAGATCTTG+TGG 0.512241 8_2:-26408806 None:intergenic
CATCATTGAAGTGATTGATA+AGG 0.521648 8_2:+26408857 Msa1242240:CDS
TAGGATTAGATATAAAGGAT+AGG 0.532672 8_2:-26409358 None:intergenic
ATGTTGAACCTCCAAATAGT+TGG 0.544310 8_2:+26408934 Msa1242240:CDS
CGATTTCACAACAGAGGGCA+AGG 0.552186 8_2:+26408728 Msa1242240:intron
AATGTAATGGCTTAATGCAT+GGG 0.552317 8_2:+26409056 Msa1242240:three_prime_UTR
CATGAAACCAAGCTGCATCA+AGG 0.562710 8_2:+26407649 Msa1242240:CDS
ACACAAACTTTAAAGATGAA+AGG 0.566966 8_2:-26409084 None:intergenic
GGATTAGATATAAAGGATAG+GGG 0.569209 8_2:-26409356 None:intergenic
TTTGTATGGAATAAATGTGT+CGG 0.578676 8_2:+26409159 Msa1242240:three_prime_UTR
TGAACCTCCAAATAGTTGGA+TGG 0.602941 8_2:+26408938 Msa1242240:CDS
TGTCTCGAGTGCATTTGCTA+AGG 0.617854 8_2:-26408965 None:intergenic
ACTCTGATTCAGTTAAACAC+TGG 0.620261 8_2:+26407686 Msa1242240:CDS
TAGTTTGAAGAACTTGTCAG+AGG 0.640528 8_2:-26407581 None:intergenic
ATGTAATGGCTTAATGCATG+GGG 0.641479 8_2:+26409057 Msa1242240:three_prime_UTR
TCATCTTGTCAAGCAAGCAA+AGG 0.651550 8_2:+26408995 Msa1242240:CDS
GAAGTGATTGATAAGGCTGA+TGG 0.663192 8_2:+26408864 Msa1242240:CDS
AAACACTGGACTCATGTCCG+AGG 0.721608 8_2:+26407700 Msa1242240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTACAATTTTTTTTT+TGG + chr8_2:26408532-26408551 Msa1242240:intron 10.0%
!!! TTGTTTACAATTTTTTTTTT+GGG + chr8_2:26408533-26408552 Msa1242240:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG - chr8_2:26408699-26408718 None:intergenic 10.0%
!!! TTTGTTTACAATTTTTTTTT+TGG + chr8_2:26408532-26408551 Msa1242240:intron 10.0%
!!! TTGTTTACAATTTTTTTTTT+GGG + chr8_2:26408533-26408552 Msa1242240:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG - chr8_2:26408699-26408718 None:intergenic 10.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG + chr8_2:26407516-26407535 Msa1242240:exon 15.0%
!! ATTAGAAATATAATTTACCT+CGG - chr8_2:26407720-26407739 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG + chr8_2:26407940-26407959 Msa1242240:intron 15.0%
!! ACCATTAAATTAAAATTAGA+TGG + chr8_2:26408210-26408229 Msa1242240:intron 15.0%
!!! AGATGAATATTTTAATTGAA+CGG + chr8_2:26408303-26408322 Msa1242240:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG + chr8_2:26408420-26408439 Msa1242240:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG - chr8_2:26408492-26408511 None:intergenic 15.0%
!!! TGTTTACAATTTTTTTTTTG+GGG + chr8_2:26408534-26408553 Msa1242240:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG - chr8_2:26408632-26408651 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG + chr8_2:26408692-26408711 Msa1242240:intron 15.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG + chr8_2:26407516-26407535 Msa1242240:exon 15.0%
!! ATTAGAAATATAATTTACCT+CGG - chr8_2:26407720-26407739 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG + chr8_2:26407940-26407959 Msa1242240:intron 15.0%
!! ACCATTAAATTAAAATTAGA+TGG + chr8_2:26408210-26408229 Msa1242240:intron 15.0%
!!! AGATGAATATTTTAATTGAA+CGG + chr8_2:26408303-26408322 Msa1242240:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG + chr8_2:26408420-26408439 Msa1242240:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG - chr8_2:26408492-26408511 None:intergenic 15.0%
!!! TGTTTACAATTTTTTTTTTG+GGG + chr8_2:26408534-26408553 Msa1242240:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG - chr8_2:26408632-26408651 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG + chr8_2:26408692-26408711 Msa1242240:intron 15.0%
!!! GACATCTTTAAATTTCATTT+TGG + chr8_2:26407870-26407889 Msa1242240:intron 20.0%
!! CAATAACATATTGCAAAATT+TGG + chr8_2:26407939-26407958 Msa1242240:intron 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG - chr8_2:26407992-26408011 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG + chr8_2:26407991-26408010 Msa1242240:intron 20.0%
!! GATCTAAGTAAAAGATATAA+AGG + chr8_2:26408027-26408046 Msa1242240:intron 20.0%
!! ATTCAAGATCAATATCAATA+TGG - chr8_2:26408072-26408091 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG + chr8_2:26408130-26408149 Msa1242240:intron 20.0%
!! TTCCATTATTAATTGTTGAT+TGG - chr8_2:26408135-26408154 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG - chr8_2:26408214-26408233 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG + chr8_2:26408432-26408451 Msa1242240:intron 20.0%
!! ACAAATGAATAGTAATGTAA+TGG + chr8_2:26409043-26409062 Msa1242240:three_prime_UTR 20.0%
!!! GAATGTTATATTCATAGTTT+TGG + chr8_2:26409267-26409286 Msa1242240:three_prime_UTR 20.0%
!!! GACATCTTTAAATTTCATTT+TGG + chr8_2:26407870-26407889 Msa1242240:intron 20.0%
!! CAATAACATATTGCAAAATT+TGG + chr8_2:26407939-26407958 Msa1242240:intron 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG - chr8_2:26407992-26408011 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG + chr8_2:26407991-26408010 Msa1242240:intron 20.0%
!! GATCTAAGTAAAAGATATAA+AGG + chr8_2:26408027-26408046 Msa1242240:intron 20.0%
!! ATTCAAGATCAATATCAATA+TGG - chr8_2:26408072-26408091 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG + chr8_2:26408130-26408149 Msa1242240:intron 20.0%
!! TTCCATTATTAATTGTTGAT+TGG - chr8_2:26408135-26408154 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG - chr8_2:26408214-26408233 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG + chr8_2:26408432-26408451 Msa1242240:intron 20.0%
!! ACAAATGAATAGTAATGTAA+TGG + chr8_2:26409043-26409062 Msa1242240:three_prime_UTR 20.0%
!!! GAATGTTATATTCATAGTTT+TGG + chr8_2:26409267-26409286 Msa1242240:three_prime_UTR 20.0%
! AAAGAGAAGAAAGAAAGAAA+GGG - chr8_2:26407490-26407509 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG + chr8_2:26407731-26407750 Msa1242240:intron 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG + chr8_2:26407796-26407815 Msa1242240:intron 25.0%
! ATGTACAAGTACAACTATAA+AGG + chr8_2:26408332-26408351 Msa1242240:intron 25.0%
!! ACACAAACTTTAAAGATGAA+AGG - chr8_2:26409087-26409106 None:intergenic 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG + chr8_2:26409098-26409117 Msa1242240:three_prime_UTR 25.0%
! TTTGTATGGAATAAATGTGT+CGG + chr8_2:26409159-26409178 Msa1242240:three_prime_UTR 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG + chr8_2:26409206-26409225 Msa1242240:three_prime_UTR 25.0%
! TCATGTTTGATTATGTTTCT+TGG + chr8_2:26409295-26409314 Msa1242240:three_prime_UTR 25.0%
! GATTATGTTTCTTGGAAATT+AGG + chr8_2:26409303-26409322 Msa1242240:three_prime_UTR 25.0%
! AGGATTAGATATAAAGGATA+GGG - chr8_2:26409360-26409379 None:intergenic 25.0%
! TAGGATTAGATATAAAGGAT+AGG - chr8_2:26409361-26409380 None:intergenic 25.0%
! TTTGCTAGGATTAGATATAA+AGG - chr8_2:26409366-26409385 None:intergenic 25.0%
! AAAGAGAAGAAAGAAAGAAA+GGG - chr8_2:26407490-26407509 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG + chr8_2:26407731-26407750 Msa1242240:intron 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG + chr8_2:26407796-26407815 Msa1242240:intron 25.0%
! ATGTACAAGTACAACTATAA+AGG + chr8_2:26408332-26408351 Msa1242240:intron 25.0%
!! ACACAAACTTTAAAGATGAA+AGG - chr8_2:26409087-26409106 None:intergenic 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG + chr8_2:26409098-26409117 Msa1242240:three_prime_UTR 25.0%
! TTTGTATGGAATAAATGTGT+CGG + chr8_2:26409159-26409178 Msa1242240:three_prime_UTR 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG + chr8_2:26409206-26409225 Msa1242240:three_prime_UTR 25.0%
! TCATGTTTGATTATGTTTCT+TGG + chr8_2:26409295-26409314 Msa1242240:three_prime_UTR 25.0%
! GATTATGTTTCTTGGAAATT+AGG + chr8_2:26409303-26409322 Msa1242240:three_prime_UTR 25.0%
! AGGATTAGATATAAAGGATA+GGG - chr8_2:26409360-26409379 None:intergenic 25.0%
! TAGGATTAGATATAAAGGAT+AGG - chr8_2:26409361-26409380 None:intergenic 25.0%
! TTTGCTAGGATTAGATATAA+AGG - chr8_2:26409366-26409385 None:intergenic 25.0%
GAAAGAGAAGAAAGAAAGAA+AGG - chr8_2:26407491-26407510 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG + chr8_2:26407548-26407567 Msa1242240:CDS 30.0%
!! ACTGGATTTATGTGCTATTT+CGG + chr8_2:26407749-26407768 Msa1242240:intron 30.0%
GATATATATAGCAAGAGTGA+TGG + chr8_2:26408158-26408177 Msa1242240:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG + chr8_2:26408436-26408455 Msa1242240:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG + chr8_2:26408443-26408462 Msa1242240:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG - chr8_2:26408470-26408489 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG - chr8_2:26408484-26408503 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG + chr8_2:26408824-26408843 Msa1242240:CDS 30.0%
CATCATTGAAGTGATTGATA+AGG + chr8_2:26408857-26408876 Msa1242240:CDS 30.0%
TGTTACGTTCTTATGACTTA+TGG - chr8_2:26409026-26409045 None:intergenic 30.0%
TAATGTAATGGCTTAATGCA+TGG + chr8_2:26409055-26409074 Msa1242240:three_prime_UTR 30.0%
AATGTAATGGCTTAATGCAT+GGG + chr8_2:26409056-26409075 Msa1242240:three_prime_UTR 30.0%
! GTTTTCATCTTTCGTTTGTA+TGG + chr8_2:26409145-26409164 Msa1242240:three_prime_UTR 30.0%
GTGTTTGTGTCTTCAATAAA+TGG + chr8_2:26409189-26409208 Msa1242240:three_prime_UTR 30.0%
GGATTAGATATAAAGGATAG+GGG - chr8_2:26409359-26409378 None:intergenic 30.0%
GAAAGAGAAGAAAGAAAGAA+AGG - chr8_2:26407491-26407510 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG + chr8_2:26407548-26407567 Msa1242240:CDS 30.0%
!! ACTGGATTTATGTGCTATTT+CGG + chr8_2:26407749-26407768 Msa1242240:intron 30.0%
GATATATATAGCAAGAGTGA+TGG + chr8_2:26408158-26408177 Msa1242240:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG + chr8_2:26408436-26408455 Msa1242240:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG + chr8_2:26408443-26408462 Msa1242240:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG - chr8_2:26408470-26408489 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG - chr8_2:26408484-26408503 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG + chr8_2:26408824-26408843 Msa1242240:CDS 30.0%
CATCATTGAAGTGATTGATA+AGG + chr8_2:26408857-26408876 Msa1242240:CDS 30.0%
TGTTACGTTCTTATGACTTA+TGG - chr8_2:26409026-26409045 None:intergenic 30.0%
TAATGTAATGGCTTAATGCA+TGG + chr8_2:26409055-26409074 Msa1242240:three_prime_UTR 30.0%
AATGTAATGGCTTAATGCAT+GGG + chr8_2:26409056-26409075 Msa1242240:three_prime_UTR 30.0%
! GTTTTCATCTTTCGTTTGTA+TGG + chr8_2:26409145-26409164 Msa1242240:three_prime_UTR 30.0%
GTGTTTGTGTCTTCAATAAA+TGG + chr8_2:26409189-26409208 Msa1242240:three_prime_UTR 30.0%
GGATTAGATATAAAGGATAG+GGG - chr8_2:26409359-26409378 None:intergenic 30.0%
! TTTTCAAAAATGGTGCTTGC+TGG + chr8_2:26407526-26407545 Msa1242240:exon 35.0%
! GGTAAACTTAGCACTGAAAT+TGG + chr8_2:26407547-26407566 Msa1242240:CDS 35.0%
TAGTTTGAAGAACTTGTCAG+AGG - chr8_2:26407584-26407603 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG + chr8_2:26407686-26407705 Msa1242240:CDS 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG + chr8_2:26408165-26408184 Msa1242240:intron 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG + chr8_2:26408442-26408461 Msa1242240:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG + chr8_2:26408444-26408463 Msa1242240:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG + chr8_2:26408798-26408817 Msa1242240:CDS 35.0%
ATGTTGAACCTCCAAATAGT+TGG + chr8_2:26408934-26408953 Msa1242240:CDS 35.0%
TATTCCATCCAACTATTTGG+AGG - chr8_2:26408945-26408964 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG - chr8_2:26408948-26408967 None:intergenic 35.0%
ATGTAATGGCTTAATGCATG+GGG + chr8_2:26409057-26409076 Msa1242240:three_prime_UTR 35.0%
GGCATATTGCATATGCATAT+TGG + chr8_2:26409119-26409138 Msa1242240:three_prime_UTR 35.0%
TAGGCAACAGATGAAGTAAT+CGG + chr8_2:26409322-26409341 Msa1242240:three_prime_UTR 35.0%
! TTTTCAAAAATGGTGCTTGC+TGG + chr8_2:26407526-26407545 Msa1242240:exon 35.0%
! GGTAAACTTAGCACTGAAAT+TGG + chr8_2:26407547-26407566 Msa1242240:CDS 35.0%
TAGTTTGAAGAACTTGTCAG+AGG - chr8_2:26407584-26407603 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG + chr8_2:26407686-26407705 Msa1242240:CDS 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG + chr8_2:26408165-26408184 Msa1242240:intron 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG + chr8_2:26408442-26408461 Msa1242240:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG + chr8_2:26408444-26408463 Msa1242240:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG + chr8_2:26408798-26408817 Msa1242240:CDS 35.0%
ATGTTGAACCTCCAAATAGT+TGG + chr8_2:26408934-26408953 Msa1242240:CDS 35.0%
TATTCCATCCAACTATTTGG+AGG - chr8_2:26408945-26408964 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG - chr8_2:26408948-26408967 None:intergenic 35.0%
ATGTAATGGCTTAATGCATG+GGG + chr8_2:26409057-26409076 Msa1242240:three_prime_UTR 35.0%
GGCATATTGCATATGCATAT+TGG + chr8_2:26409119-26409138 Msa1242240:three_prime_UTR 35.0%
TAGGCAACAGATGAAGTAAT+CGG + chr8_2:26409322-26409341 Msa1242240:three_prime_UTR 35.0%
TACCTTCGATTTCACAACAG+AGG + chr8_2:26408722-26408741 Msa1242240:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG + chr8_2:26408723-26408742 Msa1242240:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG - chr8_2:26408809-26408828 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG + chr8_2:26408864-26408883 Msa1242240:CDS 40.0%
ATGGCACTACTGCAGTTAAA+TGG + chr8_2:26408883-26408902 Msa1242240:CDS 40.0%
TGAACCTCCAAATAGTTGGA+TGG + chr8_2:26408938-26408957 Msa1242240:CDS 40.0%
TCATCTTGTCAAGCAAGCAA+AGG + chr8_2:26408995-26409014 Msa1242240:CDS 40.0%
TACCTTCGATTTCACAACAG+AGG + chr8_2:26408722-26408741 Msa1242240:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG + chr8_2:26408723-26408742 Msa1242240:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG - chr8_2:26408809-26408828 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG + chr8_2:26408864-26408883 Msa1242240:CDS 40.0%
ATGGCACTACTGCAGTTAAA+TGG + chr8_2:26408883-26408902 Msa1242240:CDS 40.0%
TGAACCTCCAAATAGTTGGA+TGG + chr8_2:26408938-26408957 Msa1242240:CDS 40.0%
TCATCTTGTCAAGCAAGCAA+AGG + chr8_2:26408995-26409014 Msa1242240:CDS 40.0%
CATGAAACCAAGCTGCATCA+AGG + chr8_2:26407649-26407668 Msa1242240:CDS 45.0%
TTCATCACCTTGATGCAGCT+TGG - chr8_2:26407659-26407678 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG + chr8_2:26407659-26407678 Msa1242240:CDS 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG - chr8_2:26408968-26408987 None:intergenic 45.0%
CATGAAACCAAGCTGCATCA+AGG + chr8_2:26407649-26407668 Msa1242240:CDS 45.0%
TTCATCACCTTGATGCAGCT+TGG - chr8_2:26407659-26407678 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG + chr8_2:26407659-26407678 Msa1242240:CDS 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG - chr8_2:26408968-26408987 None:intergenic 45.0%
!!! AATAATAATTTAAAACTATT+TGG - chr8_2:26408496-26408515 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG + chr8_2:26408603-26408622 Msa1242240:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG + chr8_2:26408604-26408623 Msa1242240:intron 5.0%
!!! AATAATAATTTAAAACTATT+TGG - chr8_2:26408496-26408515 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG + chr8_2:26408603-26408622 Msa1242240:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG + chr8_2:26408604-26408623 Msa1242240:intron 5.0%
AAACACTGGACTCATGTCCG+AGG + chr8_2:26407700-26407719 Msa1242240:CDS 50.0%
GCCCTCTGTTGTGAAATCGA+AGG - chr8_2:26408727-26408746 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG + chr8_2:26408728-26408747 Msa1242240:intron 50.0%
AAACACTGGACTCATGTCCG+AGG + chr8_2:26407700-26407719 Msa1242240:CDS 50.0%
GCCCTCTGTTGTGAAATCGA+AGG - chr8_2:26408727-26408746 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG + chr8_2:26408728-26408747 Msa1242240:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 26407480 26409388 26407480 ID=Msa1242240;Name=Msa1242240
chr8_2 mRNA 26407480 26409388 26407480 ID=Msa1242240-mRNA-1;Parent=Msa1242240;Name=Msa1242240-mRNA-1;_AED=0.38;_eAED=0.38;_QI=55|1|1|1|1|1|2|360|157
chr8_2 exon 26407480 26407721 26407480 ID=Msa1242240-mRNA-1:exon:9285;Parent=Msa1242240-mRNA-1
chr8_2 exon 26408742 26409388 26408742 ID=Msa1242240-mRNA-1:exon:9286;Parent=Msa1242240-mRNA-1
chr8_2 five_prime_UTR 26407480 26407534 26407480 ID=Msa1242240-mRNA-1:five_prime_utr;Parent=Msa1242240-mRNA-1
chr8_2 CDS 26407535 26407721 26407535 ID=Msa1242240-mRNA-1:cds;Parent=Msa1242240-mRNA-1
chr8_2 CDS 26408742 26409028 26408742 ID=Msa1242240-mRNA-1:cds;Parent=Msa1242240-mRNA-1
chr8_2 three_prime_UTR 26409029 26409388 26409029 ID=Msa1242240-mRNA-1:three_prime_utr;Parent=Msa1242240-mRNA-1
Gene Sequence

>Msa1242240

ATGGTGCTTGCTGGTAAACTTAGCACTGAAATTGGGATCAAAGCATCCTCTGACAAGTTCTTCAAACTATTCGCATCAAATATTCACGAACTGCAAAACATTTGTGAAAGTGTTCATGAAACCAAGCTGCATCAAGGTGATGAATGGCATCACTCTGATTCAGTTAAACACTGGACTCATGTCCGAGAGGGCAAGGTATACACATGTCATGAGAGTTTCGAAGAAATTGATGAAAAGAACAAAAAAATCGTCCACAAGATCTTCGGTGAAGAAATTGATGAGCACTATAAGGTCTTTAAGCTCATCATTGAAGTGATTGATAAGGCTGATGGCACTACTGCAGTTAAATGGACTGTTGAATATGAGAAGATCAATGAAGATGTTGAACCTCCAAATAGTTGGATGGAATACCTTAGCAAATGCACTCGAGACATTGATGCTCATCTTGTCAAGCAAGCAAAGGTTGCTCCATAA

Protein sequence

>Msa1242240

MVLAGKLSTEIGIKASSDKFFKLFASNIHELQNICESVHETKLHQGDEWHHSDSVKHWTHVREGKVYTCHESFEEIDEKNKKIVHKIFGEEIDEHYKVFKLIIEVIDKADGTTAVKWTVEYEKINEDVEPPNSWMEYLSKCTRDIDAHLVKQAKVAP*