AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085290 MtrunA17_Chr3g0104061 99.094 552 5 0 6 557 5 556 0.0 1128
Msa1085290 MtrunA17_Chr5g0429511 83.273 556 91 2 4 557 3 558 0.0 980
Msa1085290 MtrunA17_Chr4g0005921 74.229 551 139 2 10 557 7 557 0.0 839
Msa1085290 MtrunA17_Chr5g0436461 65.455 550 188 2 9 557 6 554 0.0 798
Msa1085290 MtrunA17_Chr5g0404361 61.497 561 212 2 1 557 51 611 0.0 734
Msa1085290 MtrunA17_Chr5g0404341 62.250 551 206 2 9 557 16 566 0.0 731
Msa1085290 MtrunA17_Chr7g0238981 62.000 550 193 6 24 557 44 593 0.0 690
Msa1085290 MtrunA17_Chr7g0237491 56.838 563 226 5 12 557 18 580 0.0 663
Msa1085290 MtrunA17_Chr7g0237441 56.128 563 230 6 12 557 18 580 0.0 657
Msa1085290 MtrunA17_Chr7g0238351 56.437 567 229 6 9 557 15 581 0.0 654
Msa1085290 MtrunA17_Chr7g0238941 55.536 569 235 7 6 557 11 578 0.0 640
Msa1085290 MtrunA17_Chr4g0031901 54.307 534 231 5 24 545 41 573 0.0 605
Msa1085290 MtrunA17_Chr5g0437681 48.239 568 273 7 7 557 4 567 0.0 560
Msa1085290 MtrunA17_Chr3g0114211 48.571 560 270 8 10 557 17 570 0.0 559
Msa1085290 MtrunA17_Chr5g0431581 49.104 558 269 6 10 557 8 560 0.0 545
Msa1085290 MtrunA17_Chr8g0346581 48.346 544 262 5 27 557 34 571 0.0 544
Msa1085290 MtrunA17_Chr2g0278811 44.833 600 288 7 1 557 8 607 0.0 526
Msa1085290 MtrunA17_Chr7g0240971 46.316 570 285 6 8 557 2 570 1.52e-172 500
Msa1085290 MtrunA17_Chr4g0008521 44.526 548 288 4 26 557 25 572 1.61e-171 498
Msa1085290 MtrunA17_Chr7g0240991 42.984 563 301 10 13 557 11 571 1.44e-164 480
Msa1085290 MtrunA17_Chr5g0436431 60.965 228 88 1 289 515 1 228 1.99e-99 300
Msa1085290 MtrunA17_Chr3g0133861 42.900 331 176 8 229 547 1 330 8.77e-79 251
Msa1085290 MtrunA17_Chr8g0382691 32.537 544 313 16 23 535 30 550 4.87e-76 251
Msa1085290 MtrunA17_Chr3g0133871 49.763 211 103 1 1 208 3 213 2.88e-68 220
Msa1085290 MtrunA17_Chr3g0118321 32.028 562 331 17 7 536 4 546 4.71e-66 224
Msa1085290 MtrunA17_Chr3g0118331 31.993 547 326 16 17 535 16 544 3.15e-64 220
Msa1085290 MtrunA17_Chr3g0143671 27.957 558 358 14 9 557 11 533 1.36e-53 190
Msa1085290 MtrunA17_Chr1g0157341 29.087 526 329 15 9 523 6 498 1.97e-52 187
Msa1085290 MtrunA17_Chr4g0038671 26.799 556 369 13 8 557 9 532 3.18e-50 181
Msa1085290 MtrunA17_Chr4g0024861 27.222 540 348 14 27 557 27 530 9.19e-47 171
Msa1085290 MtrunA17_Chr4g0056511 28.042 567 363 19 9 557 10 549 1.03e-46 172
Msa1085290 MtrunA17_Chr2g0322441 28.361 543 338 15 27 557 30 533 3.30e-45 167
Msa1085290 MtrunA17_Chr3g0079321 27.200 500 312 15 45 522 47 516 2.56e-44 166
Msa1085290 MtrunA17_Chr8g0374261 26.786 560 354 17 9 555 9 525 3.50e-44 164
Msa1085290 MtrunA17_Chr8g0374271 26.168 535 345 13 27 549 31 527 3.64e-41 156
Msa1085290 MtrunA17_Chr5g0402831 25.141 533 350 14 27 549 31 524 1.19e-38 149
Msa1085290 MtrunA17_Chr4g0043261 25.512 537 360 16 10 537 6 511 2.04e-38 148
Msa1085290 MtrunA17_Chr7g0234061 25.794 535 362 15 28 549 30 542 3.73e-38 148
Msa1085290 MtrunA17_Chr3g0121171 25.646 542 369 15 6 539 1153 1668 2.72e-37 148
Msa1085290 MtrunA17_Chr3g0121171 25.551 544 367 16 6 539 578 1093 4.79e-36 144
Msa1085290 MtrunA17_Chr3g0121171 25.000 516 359 12 28 539 27 518 1.43e-35 143
Msa1085290 MtrunA17_Chr3g0121171 25.216 464 313 14 83 539 1798 2234 1.09e-29 125
Msa1085290 MtrunA17_Chr3g0121161 25.551 544 367 16 6 539 43 558 1.07e-36 144
Msa1085290 MtrunA17_Chr3g0121151 25.551 544 367 16 6 539 43 558 2.87e-36 142
Msa1085290 MtrunA17_Chr4g0075071 26.054 522 345 14 3 517 7 494 5.18e-34 135
Msa1085290 MtrunA17_Chr4g0043251 25.477 577 368 21 8 556 3 545 3.03e-33 133
Msa1085290 MtrunA17_Chr3g0118351 32.615 325 180 10 239 536 5 317 3.85e-32 127
Msa1085290 MtrunA17_Chr4g0024641 27.111 450 276 19 81 517 3 413 1.44e-27 117
Msa1085290 MtrunA17_Chr5g0436411 62.500 72 27 0 11 82 8 79 7.50e-26 100
Msa1085290 MtrunA17_Chr1g0197301 27.066 351 217 11 219 557 6 329 1.12e-23 102
Msa1085290 MtrunA17_Chr3g0118341 39.850 133 76 4 17 146 16 147 8.40e-23 96.7
Msa1085290 MtrunA17_Chr3g0118931 44.595 74 39 1 467 540 10 81 5.90e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085290 AT2G38080.1 75.862 551 130 2 9 557 9 558 0.0 882
Msa1085290 AT5G01190.1 72.875 553 147 2 8 557 6 558 0.0 825
Msa1085290 AT5G58910.2 70.766 561 153 4 4 557 11 567 0.0 816
Msa1085290 AT5G58910.3 70.588 561 153 5 4 557 11 566 0.0 810
Msa1085290 AT5G01190.2 71.248 553 142 3 8 557 6 544 0.0 797
Msa1085290 AT5G58910.1 71.321 530 138 4 35 557 1 523 0.0 771
Msa1085290 AT5G03260.1 61.913 554 209 2 6 557 4 557 0.0 721
Msa1085290 AT5G60020.1 55.729 576 231 8 6 557 2 577 0.0 662
Msa1085290 AT5G60020.3 57.431 545 210 7 35 557 1 545 0.0 647
Msa1085290 AT2G29130.1 55.752 565 231 9 12 557 9 573 0.0 646
Msa1085290 AT5G60020.2 54.682 534 218 8 6 515 2 535 0.0 591
Msa1085290 AT5G05390.1 49.385 569 272 6 1 557 1 565 0.0 576
Msa1085290 AT2G30210.1 48.432 574 272 8 4 557 1 570 0.0 559
Msa1085290 AT1G18140.1 48.845 563 262 8 19 557 21 581 0.0 556
Msa1085290 AT2G40370.1 47.603 584 275 9 1 557 1 580 0.0 554
Msa1085290 AT2G46570.1 46.410 571 285 7 2 557 5 569 0.0 539
Msa1085290 AT5G07130.1 48.070 570 273 9 7 557 4 569 0.0 529
Msa1085290 AT5G09360.1 45.390 564 294 8 3 557 11 569 0.0 523
Msa1085290 AT3G09220.1 47.091 550 278 6 4 540 1 550 1.09e-173 503
Msa1085290 AT5G01050.1 44.779 565 286 8 9 557 14 568 1.17e-168 491
Msa1085290 AT5G01040.1 44.583 563 288 10 9 557 14 566 2.58e-165 483
Msa1085290 AT2G46570.2 46.201 487 243 5 84 557 4 484 1.01e-160 467
Msa1085290 AT5G07130.2 49.590 488 223 9 89 557 1 484 1.03e-157 459
Msa1085290 AT5G07130.3 49.590 488 223 9 89 557 1 484 1.03e-157 459
Msa1085290 AT5G48100.1 42.385 545 295 11 18 547 13 553 1.11e-151 447
Msa1085290 AT3G09220.2 48.451 452 222 5 100 540 2 453 8.33e-145 426
Msa1085290 AT4G39830.1 30.875 583 345 17 12 557 16 577 1.63e-72 242
Msa1085290 AT5G21105.1 31.111 585 322 19 11 547 22 573 2.05e-65 224
Msa1085290 AT5G21100.1 31.752 548 319 17 21 536 18 542 6.56e-65 222
Msa1085290 AT5G21105.3 30.364 550 305 18 11 515 22 538 1.67e-55 196
Msa1085290 AT4G39830.2 30.480 479 286 13 88 535 3 465 1.48e-52 187
Msa1085290 AT4G39830.3 30.462 476 284 13 91 535 4 463 7.05e-52 185
Msa1085290 AT1G21850.1 28.077 520 335 12 9 523 11 496 2.29e-51 185
Msa1085290 AT4G39830.4 29.707 478 278 12 88 535 3 452 1.45e-49 178
Msa1085290 AT1G41830.1 26.855 566 369 14 1 557 2 531 4.34e-49 178
Msa1085290 AT1G76160.1 26.433 541 363 13 1 537 1 510 6.52e-49 178
Msa1085290 AT4G25240.2 27.730 577 370 18 1 557 1 550 7.43e-48 176
Msa1085290 AT4G25240.1 27.730 577 370 18 1 557 1 550 7.43e-48 176
Msa1085290 AT5G51480.1 27.605 547 352 18 29 557 30 550 7.45e-48 176
Msa1085290 AT4G12420.1 27.017 533 348 16 7 522 4 512 4.74e-47 174
Msa1085290 AT4G12420.2 27.017 533 348 16 7 522 4 512 4.74e-47 174
Msa1085290 AT1G21860.1 26.984 504 325 14 27 523 29 496 5.64e-47 172
Msa1085290 AT1G75790.1 26.868 562 350 16 8 549 7 527 1.75e-46 171
Msa1085290 AT4G22010.1 26.715 554 368 14 10 557 9 530 6.79e-46 169
Msa1085290 AT4G28090.1 27.533 523 329 16 48 557 49 534 2.59e-45 168
Msa1085290 AT5G66920.1 26.306 536 356 13 27 557 37 538 4.08e-44 165
Msa1085290 AT4G38420.1 26.692 517 342 15 9 517 12 499 4.32e-43 162
Msa1085290 AT5G48450.2 27.183 504 336 15 20 517 23 501 3.74e-41 157
Msa1085290 AT1G55570.1 27.947 526 331 18 10 517 5 500 5.70e-41 156
Msa1085290 AT5G48450.1 26.834 518 346 16 20 531 23 513 7.02e-41 157
Msa1085290 AT4G37160.1 25.508 541 352 12 29 557 33 534 7.01e-40 152
Msa1085290 AT2G23630.1 26.753 542 343 14 29 557 32 532 1.07e-38 149
Msa1085290 AT2G23630.2 26.753 542 343 14 29 557 37 537 1.44e-38 149
Msa1085290 AT4G38420.3 26.253 499 331 15 9 499 12 481 1.91e-38 148
Msa1085290 AT1G55560.1 27.163 497 322 16 31 517 30 496 3.10e-37 145
Msa1085290 AT3G13390.1 27.689 502 320 17 28 517 29 499 3.35e-37 145
Msa1085290 AT5G21105.2 31.694 366 199 11 204 547 46 382 5.53e-36 139
Msa1085290 AT3G13400.2 25.341 513 355 13 9 517 9 497 1.30e-34 137
Msa1085290 AT3G13400.1 25.341 513 355 13 9 517 9 497 1.30e-34 137
Msa1085290 AT4G38420.2 25.902 471 313 14 9 471 12 454 2.82e-34 135
Msa1085290 AT4G37160.2 26.546 388 254 8 29 408 33 397 1.96e-30 124

Find 162 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACATTTCTTCAAGATTAA+AGG 0.156883 7_2:+85780012 Msa1085290:CDS
CCTGTGGTTTATAACTTTAC+AGG 0.192956 7_2:+85780066 Msa1085290:CDS
AAACCAATTGTAACAGTAAA+TGG 0.209691 7_2:+85778380 Msa1085290:CDS
GATGTCCAATTGACATTTAT+TGG 0.212243 7_2:+85781006 Msa1085290:three_prime_UTR
TTGTACAATTTCACTCTTAC+AGG 0.222618 7_2:+85778694 Msa1085290:CDS
GTTCATTACATTGAAATAAA+TGG 0.242621 7_2:-85780938 None:intergenic
AGTTGCAGCTTCTCCTTTCA+TGG 0.245576 7_2:+85779675 Msa1085290:CDS
ATATGACACTGAGTGTTAAT+TGG 0.251646 7_2:-85780907 None:intergenic
AGGAAACTTTGATTCTAAAA+AGG 0.263573 7_2:+85780251 Msa1085290:CDS
ATGCTCATGTCCTTTGGCTT+AGG 0.274973 7_2:+85778740 Msa1085290:CDS
ATAAATGAAGCTTTGAAATC+TGG 0.276343 7_2:+85779013 Msa1085290:CDS
AATCATCCTATTCATCTTCA+TGG 0.287524 7_2:+85780198 Msa1085290:CDS
GTGTGAGCATCAGAGGTATT+TGG 0.288436 7_2:-85779043 None:intergenic
GTTGGACTGCTATCAGATTC+AGG 0.291470 7_2:+85780337 Msa1085290:CDS
GGTGTCATGGCAGTGGTTGC+GGG 0.300744 7_2:+85777463 Msa1085290:exon
AAGTTATGATCAATCTTTAA+AGG 0.302248 7_2:-85779874 None:intergenic
ATGGAACAAGTTATTGTATT+AGG 0.303449 7_2:+85778832 Msa1085290:CDS
GTAACAGCCAAACATAAAAT+TGG 0.304548 7_2:+85779643 Msa1085290:CDS
GTGCAGCATTGATGATTCTT+AGG 0.312018 7_2:-85779492 None:intergenic
TCTTCTCTTGCATAGATTGT+AGG 0.317883 7_2:-85778416 None:intergenic
AACTTTAGCAGGGAATTTCT+TGG 0.318189 7_2:-85779851 None:intergenic
AACTTGTTCCATATGTGGTT+TGG 0.319821 7_2:-85778821 None:intergenic
ACTTGTTCCATATGTGGTTT+GGG 0.323893 7_2:-85778820 None:intergenic
GGGTGTCATGGCAGTGGTTG+CGG 0.334165 7_2:+85777462 Msa1085290:exon
TCTGTTAACTTGTTATATAT+TGG 0.335274 7_2:+85781181 Msa1085290:three_prime_UTR
GGCCCGGTTGAATCGGGCAT+TGG 0.337655 7_2:-85778663 None:intergenic
TGCTCATGTCCTTTGGCTTA+GGG 0.342579 7_2:+85778741 Msa1085290:CDS
GGTGGCATGCTCATGTCCTT+TGG 0.354997 7_2:+85778734 Msa1085290:CDS
AACCCAATGCCCGATTCAAC+CGG 0.363157 7_2:+85778660 Msa1085290:CDS
CTCCAATAAAATCTTGTCAT+TGG 0.365098 7_2:-85780969 None:intergenic
ATTTACTGTTACAATTGGTT+TGG 0.365814 7_2:-85778378 None:intergenic
TCCATATGTGGTTTGGGAAA+AGG 0.371654 7_2:-85778814 None:intergenic
TAGGTCTGGCCCGGTTGAAT+CGG 0.371672 7_2:-85778670 None:intergenic
CCTCAACAACAGTTAGTTGA+TGG 0.377830 7_2:-85779546 None:intergenic
CCATATGTGGTTTGGGAAAA+GGG 0.384456 7_2:-85778813 None:intergenic
TAAACCACAGGAGGATTTCC+AGG 0.385148 7_2:-85780054 None:intergenic
TTAAATCCATGAAGATGAAT+AGG 0.388456 7_2:-85780204 None:intergenic
TTTCCATTTACTGTTACAAT+TGG 0.390709 7_2:-85778383 None:intergenic
TCCAATAAAATCTTGTCATT+GGG 0.392277 7_2:-85780968 None:intergenic
TGGCTTAGGGCCACTGTCCA+TGG 0.392475 7_2:+85778754 Msa1085290:CDS
AAGAGTGAAATTGTACAAAT+AGG 0.392591 7_2:-85778689 None:intergenic
TAGCACTTGGGGAGGTCACT+TGG 0.394034 7_2:-85780875 None:intergenic
ACAAATTTAGCAACTACAAA+AGG 0.395229 7_2:+85780099 Msa1085290:CDS
TATAGCAGAATTTCTTTGTT+GGG 0.397946 7_2:+85777413 Msa1085290:five_prime_UTR
CACACAATCAATGGCCATCC+AGG 0.398094 7_2:+85779061 Msa1085290:CDS
ATCTTTAAAGGAACTTTAGC+AGG 0.398500 7_2:-85779862 None:intergenic
GGCTGTTACAAGCACATTTG+TGG 0.398982 7_2:-85779629 None:intergenic
AGATGACAATGTTCTAATAA+AGG 0.403469 7_2:+85778436 Msa1085290:CDS
TTATAATTCAACAGTTCAAT+TGG 0.407301 7_2:+85780143 Msa1085290:CDS
ACTGCCACTTTACATTATTC+AGG 0.408760 7_2:+85779730 Msa1085290:CDS
GAGGTGTAGAACTGAAACTA+AGG 0.410261 7_2:+85777440 Msa1085290:five_prime_UTR
TTACAAGCACATTTGTGGTT+TGG 0.419033 7_2:-85779624 None:intergenic
GTGGTTTATGCATTGCCATT+TGG 0.421349 7_2:+85780772 Msa1085290:CDS
GCAACTGAAGTAGCATTTGT+AGG 0.423976 7_2:-85779793 None:intergenic
AACGGGTTGGGCCGATGGGC+CGG 0.424341 7_2:+85778630 Msa1085290:CDS
GTTTCGAATTATACTATTGC+TGG 0.425920 7_2:+85777486 Msa1085290:CDS
GCCCGGTTGAATCGGGCATT+GGG 0.426724 7_2:-85778662 None:intergenic
ATAGACCAATAAATGTCAAT+TGG 0.429020 7_2:-85781011 None:intergenic
GCACAGCCTTGGACAGGCCC+TGG 0.433165 7_2:-85779079 None:intergenic
CTATAGCAGAATTTCTTTGT+TGG 0.443466 7_2:+85777412 Msa1085290:five_prime_UTR
ACAATAACTTGTTCCATATG+TGG 0.444307 7_2:-85778826 None:intergenic
GGATTTAATTTCTTTGTAGT+TGG 0.449492 7_2:+85780219 Msa1085290:CDS
CTACGAACGGGTTGGGCCGA+TGG 0.462286 7_2:+85778625 Msa1085290:CDS
AGGTCTGGCCCGGTTGAATC+GGG 0.463494 7_2:-85778669 None:intergenic
GGTGGTAATAGTGATTCATT+TGG 0.467355 7_2:-85780851 None:intergenic
TGAAGCTTTGAAATCTGGAT+TGG 0.468280 7_2:+85779018 Msa1085290:CDS
CACTTGGGGAGGTCACTTGG+AGG 0.469326 7_2:-85780872 None:intergenic
TTGGTACATTTCTTAGCACT+TGG 0.469731 7_2:-85780888 None:intergenic
AGCACATTTGTGGTTTGGCC+AGG 0.472275 7_2:-85779619 None:intergenic
CAAACAACTACGAACGGGTT+GGG 0.473450 7_2:+85778618 Msa1085290:CDS
CACCTTGTGAAGCACAGCCT+TGG 0.474981 7_2:-85779090 None:intergenic
TCCACTGTCTGTGGATGCTA+TGG 0.478733 7_2:+85777522 Msa1085290:CDS
GGGTAAGGAACTCCAAGCTT+AGG 0.483870 7_2:-85778793 None:intergenic
TAATTTCTTTGTAGTTGGTA+GGG 0.489391 7_2:+85780224 Msa1085290:CDS
CTGTGGTTTATAACTTTACA+GGG 0.490930 7_2:+85780067 Msa1085290:CDS
TTAATTTCTTTGTAGTTGGT+AGG 0.491457 7_2:+85780223 Msa1085290:CDS
TACGAACGGGTTGGGCCGAT+GGG 0.492168 7_2:+85778626 Msa1085290:CDS
TGAAATTGTACAAATAGGTC+TGG 0.495644 7_2:-85778684 None:intergenic
TACAACATGGGGACTGAAGA+TGG 0.496316 7_2:+85780802 Msa1085290:CDS
AAGCTTAGGTAAAATGACTA+AGG 0.497449 7_2:-85778779 None:intergenic
AATTTCTTTGTAGTTGGTAG+GGG 0.505618 7_2:+85780225 Msa1085290:CDS
TTGGACTGCTATCAGATTCA+GGG 0.506751 7_2:+85780338 Msa1085290:CDS
GGGGTCAAACAACTACGAAC+GGG 0.508123 7_2:+85778613 Msa1085290:CDS
GGCCATCCAGGGCCTGTCCA+AGG 0.511381 7_2:+85779073 Msa1085290:CDS
ATAGCAGTCCAACCTCCAGC+TGG 0.511743 7_2:-85780327 None:intergenic
TTACATTATTCAGGCACACT+TGG 0.513678 7_2:+85779739 Msa1085290:CDS
ATGTTGTATGAATTTCCAAA+TGG 0.519335 7_2:-85780787 None:intergenic
AATTTCTTTGTTGGGTAGAG+AGG 0.520522 7_2:+85777421 Msa1085290:five_prime_UTR
TCTGATGCTCACACAATCAA+TGG 0.521041 7_2:+85779052 Msa1085290:CDS
TGTGAAGCACAGCCTTGGAC+AGG 0.521392 7_2:-85779085 None:intergenic
TTTGTAGTTGGTAGGGGACA+AGG 0.522356 7_2:+85780231 Msa1085290:CDS
CAGGTCAAAGAGGCACACTT+TGG 0.524524 7_2:+85778713 Msa1085290:CDS
CTTGCATAGATTGTAGGACC+AGG 0.524607 7_2:-85778410 None:intergenic
TCAAACAACTACGAACGGGT+TGG 0.530689 7_2:+85778617 Msa1085290:CDS
TGGTACATTTCTTAGCACTT+GGG 0.534652 7_2:-85780887 None:intergenic
AGATGAATAGGATGATTCTC+AGG 0.535265 7_2:-85780192 None:intergenic
TTTGTTGTGGACAATGGTAA+AGG 0.536832 7_2:+85780827 Msa1085290:CDS
GGGCATTGGGTTATGTAAGC+CGG 0.536918 7_2:-85778649 None:intergenic
AGATTCAGGGCTGATAATCC+AGG 0.546615 7_2:+85780351 Msa1085290:CDS
GTTTAATCTTGTTGATCCTG+TGG 0.547592 7_2:+85780284 Msa1085290:CDS
CAAATTTAGCAACTACAAAA+GGG 0.550075 7_2:+85780100 Msa1085290:CDS
TAGAGAATCTGTGAAAGTGT+TGG 0.550641 7_2:-85779815 None:intergenic
ATGTTTGCTTCCACTGTCTG+TGG 0.550810 7_2:+85777513 Msa1085290:CDS
TTGGGGAGGTCACTTGGAGG+TGG 0.550876 7_2:-85780869 None:intergenic
GCATGCAGGAGGATTCTCAT+TGG 0.551595 7_2:+85779444 Msa1085290:intron
TGTGGTTTGGGAAAAGGGTA+AGG 0.551687 7_2:-85778808 None:intergenic
TAGGTGTTCCAGCTGGAGGT+TGG 0.552597 7_2:+85780319 Msa1085290:CDS
AGCCTTGGACAGGCCCTGGA+TGG 0.555092 7_2:-85779075 None:intergenic
ATTGATTGTGTGAGCATCAG+AGG 0.555850 7_2:-85779050 None:intergenic
TTCACTCTTACAGGTCAAAG+AGG 0.557117 7_2:+85778703 Msa1085290:CDS
CTTTCCTGGAAATCCTCCTG+TGG 0.559487 7_2:+85780050 Msa1085290:CDS
ATTTGGAAATTCATACAACA+TGG 0.560438 7_2:+85780789 Msa1085290:CDS
TTGTACAAATAGGTCTGGCC+CGG 0.560533 7_2:-85778679 None:intergenic
GGTTATGTAAGCCGGCCCAT+CGG 0.561036 7_2:-85778641 None:intergenic
GTCAAAGAGGCACACTTTGG+TGG 0.562180 7_2:+85778716 Msa1085290:CDS
CTTCTGATGCAACAAAGACA+AGG 0.565271 7_2:-85781157 None:intergenic
TGGGGTCAAACAACTACGAA+CGG 0.565814 7_2:+85778612 Msa1085290:CDS
ACAGTAAATGGAAAGTTCCC+TGG 0.572156 7_2:+85778392 Msa1085290:CDS
ACTGAAGATGGCATTTGTTG+TGG 0.572897 7_2:+85780814 Msa1085290:CDS
CCATCAACTAACTGTTGTTG+AGG 0.573284 7_2:+85779546 Msa1085290:CDS
TTTGGAAATTCATACAACAT+GGG 0.577320 7_2:+85780790 Msa1085290:CDS
GTGTCATGGCAGTGGTTGCG+GGG 0.578673 7_2:+85777464 Msa1085290:exon
GTCCAAGGCTGTGCTTCACA+AGG 0.578907 7_2:+85779088 Msa1085290:CDS
AATACAGTAGGTGTTCCAGC+TGG 0.579561 7_2:+85780312 Msa1085290:CDS
GGTACATTTCTTAGCACTTG+GGG 0.580989 7_2:-85780886 None:intergenic
AGGTGTAGAACTGAAACTAA+GGG 0.582026 7_2:+85777441 Msa1085290:five_prime_UTR
CCTGTAAAGTTATAAACCAC+AGG 0.582741 7_2:-85780066 None:intergenic
AGAAGTTAATGTTGTGAGTG+AGG 0.584135 7_2:-85779764 None:intergenic
ACCCAATGCCCGATTCAACC+GGG 0.584434 7_2:+85778661 Msa1085290:CDS
ACAATAGGTGCATCCATGAA+AGG 0.586114 7_2:-85779688 None:intergenic
ACTGAAACTAAGGGGTGTCA+TGG 0.591717 7_2:+85777450 Msa1085290:exon
TCTTTAAAGGAACTTTAGCA+GGG 0.591893 7_2:-85779861 None:intergenic
GACACAATTGTTATAGCACC+TGG 0.602253 7_2:+85779601 Msa1085290:CDS
TTGGAAATTCATACAACATG+GGG 0.603938 7_2:+85780791 Msa1085290:CDS
ATCTTGTTGATCCTGTGGAG+AGG 0.609930 7_2:+85780289 Msa1085290:CDS
ATGGCATTTGTTGTGGACAA+TGG 0.610790 7_2:+85780821 Msa1085290:CDS
TGAATAATGTAAAGTGGCAG+TGG 0.612605 7_2:-85779728 None:intergenic
CCTACTGTATTCCTCTCCAC+AGG 0.617875 7_2:-85780300 None:intergenic
ACATTTCTTAGCACTTGGGG+AGG 0.620338 7_2:-85780883 None:intergenic
AATACAATGTTAGCATACAC+TGG 0.622203 7_2:+85778474 Msa1085290:CDS
ACACAATCAATGGCCATCCA+GGG 0.624725 7_2:+85779062 Msa1085290:CDS
ACTAAGGGGTGTCATGGCAG+TGG 0.625174 7_2:+85777456 Msa1085290:exon
GGACAGTGGCCCTAAGCCAA+AGG 0.625616 7_2:-85778750 None:intergenic
ACAGTAGGTGTTCCAGCTGG+AGG 0.633035 7_2:+85780315 Msa1085290:CDS
TGTGCCTGAATAATGTAAAG+TGG 0.635970 7_2:-85779734 None:intergenic
TGCTAACATTGTATTTGACA+TGG 0.638789 7_2:-85778466 None:intergenic
ACCATAGCATCCACAGACAG+TGG 0.640198 7_2:-85777523 None:intergenic
TTCTGATGCAACAAAGACAA+GGG 0.642194 7_2:-85781156 None:intergenic
TTGAATTTGAAACAGGCATG+GGG 0.650420 7_2:+85778594 Msa1085290:intron
TTTGGTTGAACACAATCTTG+TGG 0.654765 7_2:-85778360 None:intergenic
ACTGAAGTAGCATTTGTAGG+AGG 0.659695 7_2:-85779790 None:intergenic
CCTGTGGAGAGGAATACAGT+AGG 0.664601 7_2:+85780300 Msa1085290:CDS
TAGCAACTACAAAAGGGACA+AGG 0.668259 7_2:+85780106 Msa1085290:CDS
TTGTTCACACAAGTAGCACA+AGG 0.670421 7_2:-85779925 None:intergenic
TTGCATAGATTGTAGGACCA+GGG 0.674611 7_2:-85778409 None:intergenic
GACTAAGGCACCATGGACAG+TGG 0.677009 7_2:-85778764 None:intergenic
GTAAAGTTATAAACCACAGG+AGG 0.682757 7_2:-85780063 None:intergenic
GTAAAATGACTAAGGCACCA+TGG 0.685444 7_2:-85778771 None:intergenic
TCTGATGCAACAAAGACAAG+GGG 0.688765 7_2:-85781155 None:intergenic
ATGGTGGAAATCAGATACTG+AGG 0.694169 7_2:+85778985 Msa1085290:CDS
GGTGTAGAACTGAAACTAAG+GGG 0.696299 7_2:+85777442 Msa1085290:five_prime_UTR
TGTTGATATCAGCTACGACG+CGG 0.782328 7_2:-85779951 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTATTTTGTTTTTGTTT+AGG + chr7_2:85778959-85778978 Msa1085290:intron 15.0%
!!! TATGGTATTATATTTTGTTA+GGG + chr7_2:85780747-85780766 Msa1085290:intron 15.0%
!!! TTCTTCTTGAATAAAATTTT+AGG + chr7_2:85781083-85781102 Msa1085290:three_prime_UTR 15.0%
!!! TCTTCTTGAATAAAATTTTA+GGG + chr7_2:85781084-85781103 Msa1085290:three_prime_UTR 15.0%
!!! TCTAAAATAATGATGCATAA+AGG + chr7_2:85777766-85777785 Msa1085290:intron 20.0%
!!! ACTTCTTTAAATTTTGAATG+TGG + chr7_2:85777836-85777855 Msa1085290:intron 20.0%
!! GTAAATGTTACTACTAAATT+TGG + chr7_2:85777863-85777882 Msa1085290:intron 20.0%
!! TGATAAAAAGTTTGAATAGA+CGG - chr7_2:85778062-85778081 None:intergenic 20.0%
!!! TCTATTCAAACTTTTTATCA+GGG + chr7_2:85778062-85778081 Msa1085290:intron 20.0%
!! CTCATAATCTAATAAATCTT+TGG - chr7_2:85778112-85778131 None:intergenic 20.0%
!!! AAATGAATTGAATTTGAAAC+AGG + chr7_2:85778587-85778606 Msa1085290:intron 20.0%
!!! GAAATTTCCAATTTTATGTT+TGG - chr7_2:85779653-85779672 None:intergenic 20.0%
!! AAGTTATGATCAATCTTTAA+AGG - chr7_2:85779877-85779896 None:intergenic 20.0%
!! TTATAATTCAACAGTTCAAT+TGG + chr7_2:85780143-85780162 Msa1085290:CDS 20.0%
!! ATAATCCAGGTAAATTTATT+AGG + chr7_2:85780364-85780383 Msa1085290:intron 20.0%
!!! ACTAATGATTTGTATCAATT+GGG - chr7_2:85780416-85780435 None:intergenic 20.0%
!!! CGATTCATTATGATAAATTT+TGG + chr7_2:85780473-85780492 Msa1085290:intron 20.0%
!!! CATAATTTCATTTTTCATCA+TGG - chr7_2:85780651-85780670 None:intergenic 20.0%
!!! GTATGGTATTATATTTTGTT+AGG + chr7_2:85780746-85780765 Msa1085290:intron 20.0%
!!! ATGGTATTATATTTTGTTAG+GGG + chr7_2:85780748-85780767 Msa1085290:intron 20.0%
!! GTTCATTACATTGAAATAAA+TGG - chr7_2:85780941-85780960 None:intergenic 20.0%
!!! TCTGTTAACTTGTTATATAT+TGG + chr7_2:85781181-85781200 Msa1085290:three_prime_UTR 20.0%
! TATAGCAGAATTTCTTTGTT+GGG + chr7_2:85777413-85777432 Msa1085290:five_prime_UTR 25.0%
!!! ACTTTTTCTTAAGTTTGACT+AGG - chr7_2:85777906-85777925 None:intergenic 25.0%
!! GTCTATTCAAACTTTTTATC+AGG + chr7_2:85778061-85778080 Msa1085290:intron 25.0%
! ACATGACTAAATGAACAAAT+TGG - chr7_2:85778158-85778177 None:intergenic 25.0%
!!! GGTCAAGTATTTTTTTTAGT+AGG - chr7_2:85778191-85778210 None:intergenic 25.0%
! TTGAAAACTAAGGATATCTA+TGG - chr7_2:85778294-85778313 None:intergenic 25.0%
!!! CATTAATTTTTTTGATGTGC+AGG + chr7_2:85778322-85778341 Msa1085290:intron 25.0%
! ATTTACTGTTACAATTGGTT+TGG - chr7_2:85778381-85778400 None:intergenic 25.0%
! AAACCAATTGTAACAGTAAA+TGG + chr7_2:85778380-85778399 Msa1085290:CDS 25.0%
! TTTCCATTTACTGTTACAAT+TGG - chr7_2:85778386-85778405 None:intergenic 25.0%
! AGATGACAATGTTCTAATAA+AGG + chr7_2:85778436-85778455 Msa1085290:CDS 25.0%
! AAGAGTGAAATTGTACAAAT+AGG - chr7_2:85778692-85778711 None:intergenic 25.0%
! ATGGAACAAGTTATTGTATT+AGG + chr7_2:85778832-85778851 Msa1085290:CDS 25.0%
!!! TTTGTTTTTGTTTAGGTGAA+TGG + chr7_2:85778966-85778985 Msa1085290:intron 25.0%
!!! ATAAATGAAGCTTTGAAATC+TGG + chr7_2:85779013-85779032 Msa1085290:CDS 25.0%
!!! ATTCAAGTTTTAAGTCACAT+TGG - chr7_2:85779159-85779178 None:intergenic 25.0%
! CGATAATAGAATTCAAACTT+AGG - chr7_2:85779294-85779313 None:intergenic 25.0%
! TATCGATGAAAGAATATCAT+TGG + chr7_2:85779309-85779328 Msa1085290:intron 25.0%
!! AATACTAGTTAGTCTATGAT+GGG - chr7_2:85779407-85779426 None:intergenic 25.0%
!! AAATACTAGTTAGTCTATGA+TGG - chr7_2:85779408-85779427 None:intergenic 25.0%
!!! AGTTTTGAATGGTTTTACAT+AGG - chr7_2:85779581-85779600 None:intergenic 25.0%
! ACAAATTTAGCAACTACAAA+AGG + chr7_2:85780099-85780118 Msa1085290:CDS 25.0%
! CAAATTTAGCAACTACAAAA+GGG + chr7_2:85780100-85780119 Msa1085290:CDS 25.0%
! TTAAATCCATGAAGATGAAT+AGG - chr7_2:85780207-85780226 None:intergenic 25.0%
!! GGATTTAATTTCTTTGTAGT+TGG + chr7_2:85780219-85780238 Msa1085290:CDS 25.0%
! TTAATTTCTTTGTAGTTGGT+AGG + chr7_2:85780223-85780242 Msa1085290:CDS 25.0%
!! TAATTTCTTTGTAGTTGGTA+GGG + chr7_2:85780224-85780243 Msa1085290:CDS 25.0%
!! AGGAAACTTTGATTCTAAAA+AGG + chr7_2:85780251-85780270 Msa1085290:CDS 25.0%
! TGTATCCTAATAAATTTACC+TGG - chr7_2:85780372-85780391 None:intergenic 25.0%
!! CACTAATGATTTGTATCAAT+TGG - chr7_2:85780417-85780436 None:intergenic 25.0%
!!! GAAATCTCGATTTTGAAAAT+AGG + chr7_2:85780590-85780609 Msa1085290:intron 25.0%
! ATGTTGTATGAATTTCCAAA+TGG - chr7_2:85780790-85780809 None:intergenic 25.0%
! ATTTGGAAATTCATACAACA+TGG + chr7_2:85780789-85780808 Msa1085290:CDS 25.0%
! TTTGGAAATTCATACAACAT+GGG + chr7_2:85780790-85780809 Msa1085290:CDS 25.0%
! TCCAATAAAATCTTGTCATT+GGG - chr7_2:85780971-85780990 None:intergenic 25.0%
! ATAGACCAATAAATGTCAAT+TGG - chr7_2:85781014-85781033 None:intergenic 25.0%
! ATGAAAAAAACACAACTAAC+AGG - chr7_2:85781045-85781064 None:intergenic 25.0%
CTATAGCAGAATTTCTTTGT+TGG + chr7_2:85777412-85777431 Msa1085290:five_prime_UTR 30.0%
GTTTCGAATTATACTATTGC+TGG + chr7_2:85777486-85777505 Msa1085290:CDS 30.0%
TAAATTTGGCTAGTGTGTTA+TGG + chr7_2:85777877-85777896 Msa1085290:intron 30.0%
GTCAAACTTAAGAAAAAGTG+TGG + chr7_2:85777907-85777926 Msa1085290:intron 30.0%
!! AAAAGTGTGGATACACATTT+TGG + chr7_2:85777920-85777939 Msa1085290:intron 30.0%
CGGTGAATTTGAGAAAATTA+CGG - chr7_2:85778042-85778061 None:intergenic 30.0%
TCATTTAGTCATGTATGTCT+TGG + chr7_2:85778164-85778183 Msa1085290:intron 30.0%
CATTTAGTCATGTATGTCTT+GGG + chr7_2:85778165-85778184 Msa1085290:intron 30.0%
TGTCACATTCTTGAAAACTA+AGG - chr7_2:85778304-85778323 None:intergenic 30.0%
TGCTAACATTGTATTTGACA+TGG - chr7_2:85778469-85778488 None:intergenic 30.0%
AATACAATGTTAGCATACAC+TGG + chr7_2:85778474-85778493 Msa1085290:CDS 30.0%
! AATTGAATTTGAAACAGGCA+TGG + chr7_2:85778592-85778611 Msa1085290:intron 30.0%
! ATTGAATTTGAAACAGGCAT+GGG + chr7_2:85778593-85778612 Msa1085290:intron 30.0%
TGAAATTGTACAAATAGGTC+TGG - chr7_2:85778687-85778706 None:intergenic 30.0%
TTGTACAATTTCACTCTTAC+AGG + chr7_2:85778694-85778713 Msa1085290:CDS 30.0%
AAGCTTAGGTAAAATGACTA+AGG - chr7_2:85778782-85778801 None:intergenic 30.0%
!! TTAGTCATTTTACCTAAGCT+TGG + chr7_2:85778781-85778800 Msa1085290:CDS 30.0%
!! ACAATAACTTGTTCCATATG+TGG - chr7_2:85778829-85778848 None:intergenic 30.0%
ATTCAAACTTAGGTCATTGT+GGG - chr7_2:85779284-85779303 None:intergenic 30.0%
AATTCAAACTTAGGTCATTG+TGG - chr7_2:85779285-85779304 None:intergenic 30.0%
!! CTTAGGAAGTATGTGTTTTT+AGG - chr7_2:85779478-85779497 None:intergenic 30.0%
!!! ACAATTGTGTCAGTTTTGAA+TGG - chr7_2:85779592-85779611 None:intergenic 30.0%
GTAACAGCCAAACATAAAAT+TGG + chr7_2:85779643-85779662 Msa1085290:CDS 30.0%
!! GTTTTGTTGTCAACAACAAT+AGG - chr7_2:85779706-85779725 None:intergenic 30.0%
! TCTTTAAAGGAACTTTAGCA+GGG - chr7_2:85779864-85779883 None:intergenic 30.0%
! ATCTTTAAAGGAACTTTAGC+AGG - chr7_2:85779865-85779884 None:intergenic 30.0%
GCACATTTCTTCAAGATTAA+AGG + chr7_2:85780012-85780031 Msa1085290:CDS 30.0%
CTGTGGTTTATAACTTTACA+GGG + chr7_2:85780067-85780086 Msa1085290:CDS 30.0%
AATCATCCTATTCATCTTCA+TGG + chr7_2:85780198-85780217 Msa1085290:CDS 30.0%
!! AATTTCTTTGTAGTTGGTAG+GGG + chr7_2:85780225-85780244 Msa1085290:CDS 30.0%
GTGTTGTGCTAATTAAAGTA+TGG + chr7_2:85780729-85780748 Msa1085290:intron 30.0%
! ATTATATTTTGTTAGGGGTG+TGG + chr7_2:85780753-85780772 Msa1085290:intron 30.0%
TTGGAAATTCATACAACATG+GGG + chr7_2:85780791-85780810 Msa1085290:CDS 30.0%
ATATGACACTGAGTGTTAAT+TGG - chr7_2:85780910-85780929 None:intergenic 30.0%
CTCCAATAAAATCTTGTCAT+TGG - chr7_2:85780972-85780991 None:intergenic 30.0%
GATGTCCAATTGACATTTAT+TGG + chr7_2:85781006-85781025 Msa1085290:three_prime_UTR 30.0%
AATTTCTTTGTTGGGTAGAG+AGG + chr7_2:85777421-85777440 Msa1085290:five_prime_UTR 35.0%
AGGTGTAGAACTGAAACTAA+GGG + chr7_2:85777441-85777460 Msa1085290:five_prime_UTR 35.0%
! TGCTGTTTGGTAGATATTCA+TGG - chr7_2:85778212-85778231 None:intergenic 35.0%
TATCTACCAAACAGCAAAGT+AGG + chr7_2:85778216-85778235 Msa1085290:intron 35.0%
CAAGGCAAGACACTTATATT+TGG + chr7_2:85778254-85778273 Msa1085290:intron 35.0%
TTTGGTTGAACACAATCTTG+TGG - chr7_2:85778363-85778382 None:intergenic 35.0%
TCTTCTCTTGCATAGATTGT+AGG - chr7_2:85778419-85778438 None:intergenic 35.0%
! TTGAATTTGAAACAGGCATG+GGG + chr7_2:85778594-85778613 Msa1085290:intron 35.0%
ACTTGTTCCATATGTGGTTT+GGG - chr7_2:85778823-85778842 None:intergenic 35.0%
! AACTTGTTCCATATGTGGTT+TGG - chr7_2:85778824-85778843 None:intergenic 35.0%
!! GTTTTTGTTTAGGTGAATGG+TGG + chr7_2:85778969-85778988 Msa1085290:intron 35.0%
!! TGAAGCTTTGAAATCTGGAT+TGG + chr7_2:85779018-85779037 Msa1085290:CDS 35.0%
! ATTGCACAACATCTAGAACT+TGG - chr7_2:85779127-85779146 None:intergenic 35.0%
TTACAAGCACATTTGTGGTT+TGG - chr7_2:85779627-85779646 None:intergenic 35.0%
TGAATAATGTAAAGTGGCAG+TGG - chr7_2:85779731-85779750 None:intergenic 35.0%
!! ACTGCCACTTTACATTATTC+AGG + chr7_2:85779730-85779749 Msa1085290:CDS 35.0%
TGTGCCTGAATAATGTAAAG+TGG - chr7_2:85779737-85779756 None:intergenic 35.0%
TTACATTATTCAGGCACACT+TGG + chr7_2:85779739-85779758 Msa1085290:CDS 35.0%
AGAAGTTAATGTTGTGAGTG+AGG - chr7_2:85779767-85779786 None:intergenic 35.0%
! TAGAGAATCTGTGAAAGTGT+TGG - chr7_2:85779818-85779837 None:intergenic 35.0%
AACTTTAGCAGGGAATTTCT+TGG - chr7_2:85779854-85779873 None:intergenic 35.0%
!! TTGCTTTTCACTGTTTCTCT+TGG + chr7_2:85779895-85779914 Msa1085290:CDS 35.0%
GTAAAGTTATAAACCACAGG+AGG - chr7_2:85780066-85780085 None:intergenic 35.0%
CCTGTAAAGTTATAAACCAC+AGG - chr7_2:85780069-85780088 None:intergenic 35.0%
CCTGTGGTTTATAACTTTAC+AGG + chr7_2:85780066-85780085 Msa1085290:CDS 35.0%
!!! CAATTGGTTTTGCAAGATAC+TGG + chr7_2:85780159-85780178 Msa1085290:CDS 35.0%
AGATGAATAGGATGATTCTC+AGG - chr7_2:85780195-85780214 None:intergenic 35.0%
GTTTAATCTTGTTGATCCTG+TGG + chr7_2:85780284-85780303 Msa1085290:CDS 35.0%
! TTTGTTGTGGACAATGGTAA+AGG + chr7_2:85780827-85780846 Msa1085290:CDS 35.0%
GGTGGTAATAGTGATTCATT+TGG - chr7_2:85780854-85780873 None:intergenic 35.0%
TGGTACATTTCTTAGCACTT+GGG - chr7_2:85780890-85780909 None:intergenic 35.0%
TTGGTACATTTCTTAGCACT+TGG - chr7_2:85780891-85780910 None:intergenic 35.0%
! GCCCAATGACAAGATTTTAT+TGG + chr7_2:85780967-85780986 Msa1085290:three_prime_UTR 35.0%
TTCTGATGCAACAAAGACAA+GGG - chr7_2:85781159-85781178 None:intergenic 35.0%
GAGGTGTAGAACTGAAACTA+AGG + chr7_2:85777440-85777459 Msa1085290:five_prime_UTR 40.0%
GGTGTAGAACTGAAACTAAG+GGG + chr7_2:85777442-85777461 Msa1085290:five_prime_UTR 40.0%
CGACACTACAAGTTCAATGT+AGG + chr7_2:85777547-85777566 Msa1085290:intron 40.0%
ACAGTAAATGGAAAGTTCCC+TGG + chr7_2:85778392-85778411 Msa1085290:CDS 40.0%
TTGCATAGATTGTAGGACCA+GGG - chr7_2:85778412-85778431 None:intergenic 40.0%
TTCACTCTTACAGGTCAAAG+AGG + chr7_2:85778703-85778722 Msa1085290:CDS 40.0%
! GTAAAATGACTAAGGCACCA+TGG - chr7_2:85778774-85778793 None:intergenic 40.0%
! CCATATGTGGTTTGGGAAAA+GGG - chr7_2:85778816-85778835 None:intergenic 40.0%
! TCCATATGTGGTTTGGGAAA+AGG - chr7_2:85778817-85778836 None:intergenic 40.0%
! ATGGTGGAAATCAGATACTG+AGG + chr7_2:85778985-85779004 Msa1085290:CDS 40.0%
ATTGATTGTGTGAGCATCAG+AGG - chr7_2:85779053-85779072 None:intergenic 40.0%
TCTGATGCTCACACAATCAA+TGG + chr7_2:85779052-85779071 Msa1085290:CDS 40.0%
ATCGCTCTTTGAGTATCTGA+GGG + chr7_2:85779357-85779376 Msa1085290:intron 40.0%
! TGAGTATCTGAGGGATTTTC+CGG + chr7_2:85779366-85779385 Msa1085290:intron 40.0%
!!! CAACTTTTTTGTGTGCATGC+AGG + chr7_2:85779430-85779449 Msa1085290:intron 40.0%
!! GTGCAGCATTGATGATTCTT+AGG - chr7_2:85779495-85779514 None:intergenic 40.0%
CCTCAACAACAGTTAGTTGA+TGG - chr7_2:85779549-85779568 None:intergenic 40.0%
CCATCAACTAACTGTTGTTG+AGG + chr7_2:85779546-85779565 Msa1085290:CDS 40.0%
GACACAATTGTTATAGCACC+TGG + chr7_2:85779601-85779620 Msa1085290:CDS 40.0%
ACAATAGGTGCATCCATGAA+AGG - chr7_2:85779691-85779710 None:intergenic 40.0%
ACTGAAGTAGCATTTGTAGG+AGG - chr7_2:85779793-85779812 None:intergenic 40.0%
GCAACTGAAGTAGCATTTGT+AGG - chr7_2:85779796-85779815 None:intergenic 40.0%
TTGTTCACACAAGTAGCACA+AGG - chr7_2:85779928-85779947 None:intergenic 40.0%
! GTTTTTACTGACGACTTTCC+TGG + chr7_2:85780036-85780055 Msa1085290:CDS 40.0%
TAGCAACTACAAAAGGGACA+AGG + chr7_2:85780106-85780125 Msa1085290:CDS 40.0%
TTGGACTGCTATCAGATTCA+GGG + chr7_2:85780338-85780357 Msa1085290:CDS 40.0%
GTGGTTTATGCATTGCCATT+TGG + chr7_2:85780772-85780791 Msa1085290:CDS 40.0%
! ACTGAAGATGGCATTTGTTG+TGG + chr7_2:85780814-85780833 Msa1085290:CDS 40.0%
!! ATGGCATTTGTTGTGGACAA+TGG + chr7_2:85780821-85780840 Msa1085290:CDS 40.0%
GGTACATTTCTTAGCACTTG+GGG - chr7_2:85780889-85780908 None:intergenic 40.0%
TCTGATGCAACAAAGACAAG+GGG - chr7_2:85781158-85781177 None:intergenic 40.0%
CTTCTGATGCAACAAAGACA+AGG - chr7_2:85781160-85781179 None:intergenic 40.0%
!! ACTGAAACTAAGGGGTGTCA+TGG + chr7_2:85777450-85777469 Msa1085290:exon 45.0%
ATGTTTGCTTCCACTGTCTG+TGG + chr7_2:85777513-85777532 Msa1085290:CDS 45.0%
!! CCTACACCTACTTTGCTGTT+TGG - chr7_2:85778225-85778244 None:intergenic 45.0%
CCAAACAGCAAAGTAGGTGT+AGG + chr7_2:85778222-85778241 Msa1085290:intron 45.0%
AGGTGTAGGATTGATGAGCA+AGG + chr7_2:85778236-85778255 Msa1085290:intron 45.0%
CTTGCATAGATTGTAGGACC+AGG - chr7_2:85778413-85778432 None:intergenic 45.0%
TGGGGTCAAACAACTACGAA+CGG + chr7_2:85778612-85778631 Msa1085290:CDS 45.0%
TCAAACAACTACGAACGGGT+TGG + chr7_2:85778617-85778636 Msa1085290:CDS 45.0%
! CAAACAACTACGAACGGGTT+GGG + chr7_2:85778618-85778637 Msa1085290:CDS 45.0%
TTGTACAAATAGGTCTGGCC+CGG - chr7_2:85778682-85778701 None:intergenic 45.0%
! ATGCTCATGTCCTTTGGCTT+AGG + chr7_2:85778740-85778759 Msa1085290:CDS 45.0%
! TGCTCATGTCCTTTGGCTTA+GGG + chr7_2:85778741-85778760 Msa1085290:CDS 45.0%
! TGTGGTTTGGGAAAAGGGTA+AGG - chr7_2:85778811-85778830 None:intergenic 45.0%
! CCCTTTTCCCAAACCACATA+TGG + chr7_2:85778813-85778832 Msa1085290:CDS 45.0%
!! GTGTGAGCATCAGAGGTATT+TGG - chr7_2:85779046-85779065 None:intergenic 45.0%
ACACAATCAATGGCCATCCA+GGG + chr7_2:85779062-85779081 Msa1085290:CDS 45.0%
CCAACTAGCACAATCTTCGT+TGG - chr7_2:85779251-85779270 None:intergenic 45.0%
CCAACGAAGATTGTGCTAGT+TGG + chr7_2:85779248-85779267 Msa1085290:intron 45.0%
CATCGCTCTTTGAGTATCTG+AGG + chr7_2:85779356-85779375 Msa1085290:intron 45.0%
TGGGAGAAATCAACACGATC+CGG - chr7_2:85779388-85779407 None:intergenic 45.0%
!!! CTTTTTTGTGTGCATGCAGG+AGG + chr7_2:85779433-85779452 Msa1085290:intron 45.0%
GGCTGTTACAAGCACATTTG+TGG - chr7_2:85779632-85779651 None:intergenic 45.0%
AGTTGCAGCTTCTCCTTTCA+TGG + chr7_2:85779675-85779694 Msa1085290:CDS 45.0%
TGTTGATATCAGCTACGACG+CGG - chr7_2:85779954-85779973 None:intergenic 45.0%
!! GCTTGAAGAAGCGCGATTTT+CGG - chr7_2:85779994-85780013 None:intergenic 45.0%
TAAACCACAGGAGGATTTCC+AGG - chr7_2:85780057-85780076 None:intergenic 45.0%
!! TTTGTAGTTGGTAGGGGACA+AGG + chr7_2:85780231-85780250 Msa1085290:CDS 45.0%
ATCTTGTTGATCCTGTGGAG+AGG + chr7_2:85780289-85780308 Msa1085290:CDS 45.0%
AATACAGTAGGTGTTCCAGC+TGG + chr7_2:85780312-85780331 Msa1085290:CDS 45.0%
GTTGGACTGCTATCAGATTC+AGG + chr7_2:85780337-85780356 Msa1085290:CDS 45.0%
AGATTCAGGGCTGATAATCC+AGG + chr7_2:85780351-85780370 Msa1085290:CDS 45.0%
TACAACATGGGGACTGAAGA+TGG + chr7_2:85780802-85780821 Msa1085290:CDS 45.0%
ACATTTCTTAGCACTTGGGG+AGG - chr7_2:85780886-85780905 None:intergenic 45.0%
TCCACTGTCTGTGGATGCTA+TGG + chr7_2:85777522-85777541 Msa1085290:CDS 50.0%
ACCATAGCATCCACAGACAG+TGG - chr7_2:85777526-85777545 None:intergenic 50.0%
GGGGTCAAACAACTACGAAC+GGG + chr7_2:85778613-85778632 Msa1085290:CDS 50.0%
!! GGGCATTGGGTTATGTAAGC+CGG - chr7_2:85778652-85778671 None:intergenic 50.0%
AACCCAATGCCCGATTCAAC+CGG + chr7_2:85778660-85778679 Msa1085290:CDS 50.0%
! CAGGTCAAAGAGGCACACTT+TGG + chr7_2:85778713-85778732 Msa1085290:CDS 50.0%
! GTCAAAGAGGCACACTTTGG+TGG + chr7_2:85778716-85778735 Msa1085290:CDS 50.0%
GGGTAAGGAACTCCAAGCTT+AGG - chr7_2:85778796-85778815 None:intergenic 50.0%
CACACAATCAATGGCCATCC+AGG + chr7_2:85779061-85779080 Msa1085290:CDS 50.0%
GCATGCAGGAGGATTCTCAT+TGG + chr7_2:85779444-85779463 Msa1085290:intron 50.0%
! AGCACATTTGTGGTTTGGCC+AGG - chr7_2:85779622-85779641 None:intergenic 50.0%
CTTTCCTGGAAATCCTCCTG+TGG + chr7_2:85780050-85780069 Msa1085290:CDS 50.0%
CCTACTGTATTCCTCTCCAC+AGG - chr7_2:85780303-85780322 None:intergenic 50.0%
CCTGTGGAGAGGAATACAGT+AGG + chr7_2:85780300-85780319 Msa1085290:CDS 50.0%
!! ACTAAGGGGTGTCATGGCAG+TGG + chr7_2:85777456-85777475 Msa1085290:exon 55.0%
GGTTATGTAAGCCGGCCCAT+CGG - chr7_2:85778644-85778663 None:intergenic 55.0%
ACCCAATGCCCGATTCAACC+GGG + chr7_2:85778661-85778680 Msa1085290:CDS 55.0%
TAGGTCTGGCCCGGTTGAAT+CGG - chr7_2:85778673-85778692 None:intergenic 55.0%
GGTGGCATGCTCATGTCCTT+TGG + chr7_2:85778734-85778753 Msa1085290:CDS 55.0%
! GACTAAGGCACCATGGACAG+TGG - chr7_2:85778767-85778786 None:intergenic 55.0%
TGTGAAGCACAGCCTTGGAC+AGG - chr7_2:85779088-85779107 None:intergenic 55.0%
GTCCAAGGCTGTGCTTCACA+AGG + chr7_2:85779088-85779107 Msa1085290:CDS 55.0%
CACCTTGTGAAGCACAGCCT+TGG - chr7_2:85779093-85779112 None:intergenic 55.0%
ACAGTAGGTGTTCCAGCTGG+AGG + chr7_2:85780315-85780334 Msa1085290:CDS 55.0%
TAGGTGTTCCAGCTGGAGGT+TGG + chr7_2:85780319-85780338 Msa1085290:CDS 55.0%
ATAGCAGTCCAACCTCCAGC+TGG - chr7_2:85780330-85780349 None:intergenic 55.0%
TAGCACTTGGGGAGGTCACT+TGG - chr7_2:85780878-85780897 None:intergenic 55.0%
! GGGTGTCATGGCAGTGGTTG+CGG + chr7_2:85777462-85777481 Msa1085290:exon 60.0%
! GGTGTCATGGCAGTGGTTGC+GGG + chr7_2:85777463-85777482 Msa1085290:exon 60.0%
GTGTCATGGCAGTGGTTGCG+GGG + chr7_2:85777464-85777483 Msa1085290:exon 60.0%
!! TACGAACGGGTTGGGCCGAT+GGG + chr7_2:85778626-85778645 Msa1085290:CDS 60.0%
GCCCGGTTGAATCGGGCATT+GGG - chr7_2:85778665-85778684 None:intergenic 60.0%
AGGTCTGGCCCGGTTGAATC+GGG - chr7_2:85778672-85778691 None:intergenic 60.0%
GGACAGTGGCCCTAAGCCAA+AGG - chr7_2:85778753-85778772 None:intergenic 60.0%
TGGCTTAGGGCCACTGTCCA+TGG + chr7_2:85778754-85778773 Msa1085290:CDS 60.0%
TTGGGGAGGTCACTTGGAGG+TGG - chr7_2:85780872-85780891 None:intergenic 60.0%
CACTTGGGGAGGTCACTTGG+AGG - chr7_2:85780875-85780894 None:intergenic 60.0%
!! CTACGAACGGGTTGGGCCGA+TGG + chr7_2:85778625-85778644 Msa1085290:CDS 65.0%
GGCCCGGTTGAATCGGGCAT+TGG - chr7_2:85778666-85778685 None:intergenic 65.0%
AGCCTTGGACAGGCCCTGGA+TGG - chr7_2:85779078-85779097 None:intergenic 65.0%
!! AACGGGTTGGGCCGATGGGC+CGG + chr7_2:85778630-85778649 Msa1085290:CDS 70.0%
GGCCATCCAGGGCCTGTCCA+AGG + chr7_2:85779073-85779092 Msa1085290:CDS 70.0%
GCACAGCCTTGGACAGGCCC+TGG - chr7_2:85779082-85779101 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 85777365 85781223 85777365 ID=Msa1085290;Name=Msa1085290
chr7_2 mRNA 85777365 85781223 85777365 ID=Msa1085290-mRNA-1;Parent=Msa1085290;Name=Msa1085290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104|1|1|1|1|1|6|325|557
chr7_2 exon 85777365 85777564 85777365 ID=Msa1085290-mRNA-1:exon:23183;Parent=Msa1085290-mRNA-1
chr7_2 exon 85778344 85778495 85778344 ID=Msa1085290-mRNA-1:exon:23184;Parent=Msa1085290-mRNA-1
chr7_2 exon 85778609 85778853 85778609 ID=Msa1085290-mRNA-1:exon:23185;Parent=Msa1085290-mRNA-1
chr7_2 exon 85778981 85779109 85778981 ID=Msa1085290-mRNA-1:exon:23186;Parent=Msa1085290-mRNA-1
chr7_2 exon 85779452 85780372 85779452 ID=Msa1085290-mRNA-1:exon:23187;Parent=Msa1085290-mRNA-1
chr7_2 exon 85780768 85781223 85780768 ID=Msa1085290-mRNA-1:exon:23188;Parent=Msa1085290-mRNA-1
chr7_2 five_prime_UTR 85777365 85777468 85777365 ID=Msa1085290-mRNA-1:five_prime_utr;Parent=Msa1085290-mRNA-1
chr7_2 CDS 85777469 85777564 85777469 ID=Msa1085290-mRNA-1:cds;Parent=Msa1085290-mRNA-1
chr7_2 CDS 85778344 85778495 85778344 ID=Msa1085290-mRNA-1:cds;Parent=Msa1085290-mRNA-1
chr7_2 CDS 85778609 85778853 85778609 ID=Msa1085290-mRNA-1:cds;Parent=Msa1085290-mRNA-1
chr7_2 CDS 85778981 85779109 85778981 ID=Msa1085290-mRNA-1:cds;Parent=Msa1085290-mRNA-1
chr7_2 CDS 85779452 85780372 85779452 ID=Msa1085290-mRNA-1:cds;Parent=Msa1085290-mRNA-1
chr7_2 CDS 85780768 85780898 85780768 ID=Msa1085290-mRNA-1:cds;Parent=Msa1085290-mRNA-1
chr7_2 three_prime_UTR 85780899 85781223 85780899 ID=Msa1085290-mRNA-1:three_prime_utr;Parent=Msa1085290-mRNA-1
Gene Sequence

>Msa1085290

ATGGCAGTGGTTGCGGGGTTTCGAATTATACTATTGCTGGCAGCATGTTTGCTTCCACTGTCTGTGGATGCTATGGTTCGACACTACAAGTTCAATGTTGTGATGAAAAATGCCACAAGATTGTGTTCAACCAAACCAATTGTAACAGTAAATGGAAAGTTCCCTGGTCCTACAATCTATGCAAGAGAAGATGACAATGTTCTAATAAAGGTTGTCAACCATGTCAAATACAATGTTAGCATACACTGGCATGGGGTCAAACAACTACGAACGGGTTGGGCCGATGGGCCGGCTTACATAACCCAATGCCCGATTCAACCGGGCCAGACCTATTTGTACAATTTCACTCTTACAGGTCAAAGAGGCACACTTTGGTGGCATGCTCATGTCCTTTGGCTTAGGGCCACTGTCCATGGTGCCTTAGTCATTTTACCTAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCACATATGGAACAAGTTATTGTATTAGGTGAATGGTGGAAATCAGATACTGAGGCTATAATAAATGAAGCTTTGAAATCTGGATTGGCTCCAAATACCTCTGATGCTCACACAATCAATGGCCATCCAGGGCCTGTCCAAGGCTGTGCTTCACAAGGAGGATTCTCATTGGAAGTACAACCTAAAAACACATACTTCCTAAGAATCATCAATGCTGCACTCAATGAAGAGCTCTTCTTTAAAATTGCTAACCATCAACTAACTGTTGTTGAGGTTGATGCAACCTATGTAAAACCATTCAAAACTGACACAATTGTTATAGCACCTGGCCAAACCACAAATGTGCTTGTAACAGCCAAACATAAAATTGGAAATTTCTTAGTTGCAGCTTCTCCTTTCATGGATGCACCTATTGTTGTTGACAACAAAACTGCCACTGCCACTTTACATTATTCAGGCACACTTGGTTCCTCACTCACAACATTAACTTCTTTGCCTCCTACAAATGCTACTTCAGTTGCCAACACTTTCACAGATTCTCTAAGAAGCTTAAACTCCAAGAAATTCCCTGCTAAAGTTCCTTTAAAGATTGATCATAACTTGCTTTTCACTGTTTCTCTTGGTGTCAATCCTTGTGCTACTTGTGTGAACAATAGCCGCGTCGTAGCTGATATCAACAATGTTACATTTGTGATGCCGAAAATCGCGCTTCTTCAAGCACATTTCTTCAAGATTAAAGGAGTTTTTACTGACGACTTTCCTGGAAATCCTCCTGTGGTTTATAACTTTACAGGGTCACAAGTGACAAATTTAGCAACTACAAAAGGGACAAGGCTTTATAGACTTGCTTATAATTCAACAGTTCAATTGGTTTTGCAAGATACTGGAATGTTAACACCTGAGAATCATCCTATTCATCTTCATGGATTTAATTTCTTTGTAGTTGGTAGGGGACAAGGAAACTTTGATTCTAAAAAGGATGTAAAAAAGTTTAATCTTGTTGATCCTGTGGAGAGGAATACAGTAGGTGTTCCAGCTGGAGGTTGGACTGCTATCAGATTCAGGGCTGATAATCCAGGGGTGTGGTTTATGCATTGCCATTTGGAAATTCATACAACATGGGGACTGAAGATGGCATTTGTTGTGGACAATGGTAAAGGACCAAATGAATCACTATTACCACCTCCAAGTGACCTCCCCAAGTGCTAA
Protein sequence

>Msa1085290

MAVVAGFRIILLLAACLLPLSVDAMVRHYKFNVVMKNATRLCSTKPIVTVNGKFPGPTIYAREDDNVLIKVVNHVKYNVSIHWHGVKQLRTGWADGPAYITQCPIQPGQTYLYNFTLTGQRGTLWWHAHVLWLRATVHGALVILPKLGVPYPFPKPHMEQVIVLGEWWKSDTEAIINEALKSGLAPNTSDAHTINGHPGPVQGCASQGGFSLEVQPKNTYFLRIINAALNEELFFKIANHQLTVVEVDATYVKPFKTDTIVIAPGQTTNVLVTAKHKIGNFLVAASPFMDAPIVVDNKTATATLHYSGTLGSSLTTLTSLPPTNATSVANTFTDSLRSLNSKKFPAKVPLKIDHNLLFTVSLGVNPCATCVNNSRVVADINNVTFVMPKIALLQAHFFKIKGVFTDDFPGNPPVVYNFTGSQVTNLATTKGTRLYRLAYNSTVQLVLQDTGMLTPENHPIHLHGFNFFVVGRGQGNFDSKKDVKKFNLVDPVERNTVGVPAGGWTAIRFRADNPGVWFMHCHLEIHTTWGLKMAFVVDNGKGPNESLLPPPSDLPKC*