Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087400 | XP_003621272.1 | 87.072 | 526 | 28 | 4 | 32 | 540 | 33 | 535 | 0.0 | 907 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087400 | sp|P55217|CGS1_ARATH | 71.127 | 426 | 96 | 4 | 120 | 540 | 160 | 563 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087400 | G7L227 | 87.072 | 526 | 28 | 4 | 32 | 540 | 33 | 535 | 0.0 | 907 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618020 | Msa1087400 | 0.805050 | 1.609579e-49 | -8.615850e-47 |
| Msa0701040 | Msa1087400 | 0.816647 | 4.964913e-52 | -8.615850e-47 |
| Msa1007370 | Msa1087400 | 0.833992 | 3.876834e-56 | -8.615850e-47 |
| Msa1049030 | Msa1087400 | 0.930399 | 1.734320e-93 | -8.615850e-47 |
| Msa1087400 | Msa1100680 | 0.805459 | 1.321260e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087400 | MtrunA17_Chr7g0217761 | 87.072 | 526 | 28 | 4 | 32 | 540 | 33 | 535 | 0.0 | 907 |
| Msa1087400 | MtrunA17_Chr6g0453481 | 68.384 | 427 | 107 | 5 | 119 | 540 | 74 | 477 | 0.0 | 590 |
| Msa1087400 | MtrunA17_Chr1g0181151 | 31.285 | 358 | 220 | 6 | 185 | 538 | 129 | 464 | 1.52e-52 | 185 |
| Msa1087400 | MtrunA17_Chr3g0119851 | 28.329 | 353 | 214 | 9 | 185 | 522 | 92 | 420 | 6.84e-34 | 133 |
| Msa1087400 | MtrunA17_Chr1g0189071 | 26.934 | 349 | 225 | 8 | 185 | 522 | 93 | 422 | 1.86e-31 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087400 | AT3G01120.1 | 71.127 | 426 | 96 | 4 | 120 | 540 | 160 | 563 | 0.0 | 615 |
| Msa1087400 | AT1G33320.1 | 60.945 | 402 | 130 | 4 | 144 | 540 | 33 | 412 | 1.08e-170 | 489 |
| Msa1087400 | AT1G33320.2 | 61.323 | 393 | 125 | 4 | 153 | 540 | 3 | 373 | 1.09e-168 | 483 |
| Msa1087400 | AT1G33320.3 | 60.632 | 348 | 110 | 4 | 198 | 540 | 3 | 328 | 1.57e-144 | 419 |
| Msa1087400 | AT3G57050.5 | 31.250 | 384 | 230 | 8 | 154 | 533 | 24 | 377 | 2.47e-55 | 191 |
| Msa1087400 | AT3G57050.4 | 31.250 | 384 | 230 | 8 | 154 | 533 | 46 | 399 | 2.60e-55 | 191 |
| Msa1087400 | AT3G57050.2 | 31.250 | 384 | 230 | 8 | 154 | 533 | 87 | 440 | 6.29e-55 | 192 |
| Msa1087400 | AT3G57050.1 | 31.250 | 384 | 230 | 8 | 154 | 533 | 102 | 455 | 9.43e-55 | 191 |
| Msa1087400 | AT3G57050.3 | 29.900 | 301 | 178 | 7 | 154 | 450 | 102 | 373 | 6.00e-37 | 141 |
| Msa1087400 | AT1G64660.1 | 29.745 | 353 | 210 | 11 | 185 | 522 | 93 | 422 | 2.12e-35 | 138 |
Find 194 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGGCAGATGACTGGTTT+TGG | 0.206527 | 7_3:+136160 | Msa1087400:CDS |
| ATTAATTCCTTGAACTGATT+TGG | 0.218651 | 7_3:+137434 | Msa1087400:three_prime_UTR |
| GATGGCGATGTCGTCGAAAA+TGG | 0.220327 | 7_3:+132654 | Msa1087400:CDS |
| TTTGATTATGGCTTATTTCT+TGG | 0.223514 | 7_3:-137649 | None:intergenic |
| CCAAATGAGGCAGCAATATA+TGG | 0.229851 | 7_3:-136350 | None:intergenic |
| GTGGAAGATTTATGACAATT+TGG | 0.239016 | 7_3:+137245 | Msa1087400:CDS |
| TAGCCTTAGATCTTTGATTA+TGG | 0.262096 | 7_3:-137661 | None:intergenic |
| CGTCAAACTAGTTATGAATA+TGG | 0.263385 | 7_3:+133951 | Msa1087400:CDS |
| GCTGAGTTGACGTTGGAAAT+TGG | 0.265209 | 7_3:-132448 | None:intergenic |
| AATATCCGCGCAGCAAATAC+TGG | 0.273348 | 7_3:-137414 | None:intergenic |
| TTCACATTCATTTCATCATT+TGG | 0.278874 | 7_3:+132182 | None:intergenic |
| TTCTTTCTGGTTCAGGTACT+TGG | 0.288738 | 7_3:+135139 | Msa1087400:intron |
| TTGGGATTGTTCTAAAAGTT+TGG | 0.290930 | 7_3:-135434 | None:intergenic |
| CACCAAGGGCAAGGGCCTTC+TGG | 0.291162 | 7_3:-134992 | None:intergenic |
| TTGATTATGGCTTATTTCTT+GGG | 0.292997 | 7_3:-137648 | None:intergenic |
| CCTTGCCCTTGGTGCTGATT+TGG | 0.297489 | 7_3:+135001 | Msa1087400:CDS |
| TTCTCTCTTGTTATCTTGTC+TGG | 0.298913 | 7_3:+137467 | Msa1087400:three_prime_UTR |
| TTAATTCCTTGAACTGATTT+GGG | 0.303748 | 7_3:+137435 | Msa1087400:three_prime_UTR |
| CATACCTTGATCCCCATCTT+TGG | 0.307990 | 7_3:-134272 | None:intergenic |
| CAACCCAACCAGTACTGTTT+TGG | 0.308335 | 7_3:+133983 | Msa1087400:CDS |
| CCATATATTGCTGCCTCATT+TGG | 0.309206 | 7_3:+136350 | Msa1087400:CDS |
| AATAATGAATAGTGCCTATA+TGG | 0.313919 | 7_3:-137334 | None:intergenic |
| TGGAGCCTTGCAATCTGCTT+TGG | 0.315672 | 7_3:+134741 | Msa1087400:CDS |
| TGACTACTACTGATTGTTAC+AGG | 0.328186 | 7_3:+134219 | Msa1087400:CDS |
| CAGAACTTTGCCACAAGAAT+GGG | 0.332287 | 7_3:+134928 | Msa1087400:CDS |
| CACTTGGCCCTTTCTGATGC+AGG | 0.349298 | 7_3:-137225 | None:intergenic |
| GGAGGAGATGGCGGCGGCGG+AGG | 0.349587 | 7_3:-132407 | None:intergenic |
| TTTGAAGGCTGATGTCTTGC+AGG | 0.352504 | 7_3:+137302 | Msa1087400:CDS |
| TGGGGAGGAGATGGCGGCGG+CGG | 0.354331 | 7_3:-132410 | None:intergenic |
| TCAACTATCTTGATGGCATC+TGG | 0.354904 | 7_3:+134140 | Msa1087400:CDS |
| GGATGGAAGGGAGGTGAAAT+CGG | 0.370397 | 7_3:-132332 | None:intergenic |
| AAGTTTGGCCATCCTCATTC+CGG | 0.375018 | 7_3:-135419 | None:intergenic |
| ATGGCGATGTCGTCGAAAAT+GGG | 0.377789 | 7_3:+132655 | Msa1087400:CDS |
| AAGCCATAATCAAAGATCTA+AGG | 0.379390 | 7_3:+137658 | Msa1087400:three_prime_UTR |
| TGAGTACCAGTAAGACAAAA+TGG | 0.381061 | 7_3:-136402 | None:intergenic |
| AACCAGAAGGCCCTTGCCCT+TGG | 0.386207 | 7_3:+134990 | Msa1087400:CDS |
| GGGAACCCCAGCGGTGTCGC+TGG | 0.386906 | 7_3:+132546 | Msa1087400:CDS |
| GGAACCCCAGCGGTGTCGCT+GGG | 0.387081 | 7_3:+132547 | Msa1087400:CDS |
| GCGGTTGTGGTGGTGGTTGT+CGG | 0.387999 | 7_3:-132356 | None:intergenic |
| CTGAGTTGACGTTGGAAATT+GGG | 0.394633 | 7_3:-132447 | None:intergenic |
| TTGCCTATAATGCAGATTGA+TGG | 0.397473 | 7_3:+136284 | Msa1087400:intron |
| CATTCATTTCATCATTTGGT+TGG | 0.399205 | 7_3:+132186 | None:intergenic |
| TGGGAGGAAAACGGAGGATG+GGG | 0.410516 | 7_3:-132428 | None:intergenic |
| GGAAATGACGACGGCGGTTG+TGG | 0.411184 | 7_3:-132369 | None:intergenic |
| GGCTGATGTCTTGCAGGCAC+TGG | 0.415737 | 7_3:+137308 | Msa1087400:CDS |
| TGGTGGTGGTTGTCGGTGGA+TGG | 0.415993 | 7_3:-132349 | None:intergenic |
| GGGGCTTTGCTCGTCATTGA+TGG | 0.416380 | 7_3:+134948 | Msa1087400:CDS |
| TCGTGGTCTAATGAAGGAAC+TGG | 0.416954 | 7_3:+132525 | Msa1087400:CDS |
| TATATTGCTGCCTCATTTGG+TGG | 0.416975 | 7_3:+136353 | Msa1087400:CDS |
| CTCATGGCAAGCTCATGTTC+AGG | 0.417754 | 7_3:-136142 | None:intergenic |
| ATTGGGAGGAAAACGGAGGA+TGG | 0.418180 | 7_3:-132430 | None:intergenic |
| CGGAGGAGAGGGAGGTTGTT+GGG | 0.419778 | 7_3:-132390 | None:intergenic |
| AATTTGGTTCGATTCAGCTT+TGG | 0.422581 | 7_3:+137261 | Msa1087400:CDS |
| GATGGCGGCGGCGGAGGAGA+GGG | 0.423120 | 7_3:-132401 | None:intergenic |
| CACAAATCGTCGCTGCTTCG+TGG | 0.427715 | 7_3:+132508 | Msa1087400:CDS |
| GGAGGATGGGGAGGAGATGG+CGG | 0.428072 | 7_3:-132416 | None:intergenic |
| GCAGGCACTGGAAGCCATAT+AGG | 0.435135 | 7_3:+137320 | Msa1087400:CDS |
| GGTGGTTGTCGGTGGATGGA+AGG | 0.436388 | 7_3:-132345 | None:intergenic |
| TCAGAACTTTGCCACAAGAA+TGG | 0.438377 | 7_3:+134927 | Msa1087400:CDS |
| GGCTGAGTCAACTATCTTGA+TGG | 0.438443 | 7_3:+134133 | Msa1087400:CDS |
| GCTGCAGTTACGACGCGCTT+TGG | 0.438927 | 7_3:-132472 | None:intergenic |
| GCGGAGGAGAGGGAGGTTGT+TGG | 0.439828 | 7_3:-132391 | None:intergenic |
| TCATTATTGAATCAGTGAAC+TGG | 0.440444 | 7_3:+134106 | Msa1087400:intron |
| GAATTATGATTGCATGTGTT+GGG | 0.441020 | 7_3:+137500 | Msa1087400:three_prime_UTR |
| AGAGACTGTTCTTCCAAAGA+TGG | 0.448366 | 7_3:+134259 | Msa1087400:CDS |
| TCAGGATGACTTGGCAAGCC+TGG | 0.449767 | 7_3:-136124 | None:intergenic |
| CATAGTCTTGCTGATGGCGC+TGG | 0.451246 | 7_3:+134175 | Msa1087400:CDS |
| GATGGAAGGGAGGTGAAATC+GGG | 0.452446 | 7_3:-132331 | None:intergenic |
| GAGGAAAACGGAGGATGGGG+AGG | 0.452524 | 7_3:-132425 | None:intergenic |
| CCTCCAAAACAGTACTGGTT+GGG | 0.455886 | 7_3:-133986 | None:intergenic |
| TGTCGCTGGGGTTCCGACTC+CGG | 0.456210 | 7_3:+132560 | Msa1087400:CDS |
| TTGGGAGGAAAACGGAGGAT+GGG | 0.458090 | 7_3:-132429 | None:intergenic |
| GTACATAAACAGAATTCAAC+CGG | 0.468702 | 7_3:+135400 | Msa1087400:intron |
| GTGAAGCGTGTCTACTATCC+AGG | 0.468909 | 7_3:+136106 | Msa1087400:CDS |
| AACGGAGGATGGGGAGGAGA+TGG | 0.469289 | 7_3:-132419 | None:intergenic |
| GTCAAACTAGTTATGAATAT+GGG | 0.469406 | 7_3:+133952 | Msa1087400:CDS |
| GGATGGGGAGGAGATGGCGG+CGG | 0.473111 | 7_3:-132413 | None:intergenic |
| AGATGGCGGCGGCGGAGGAG+AGG | 0.474313 | 7_3:-132402 | None:intergenic |
| CTTCTCCTCCAAAACAGTAC+TGG | 0.475513 | 7_3:-133991 | None:intergenic |
| TTGGTTGGTGTAGAGGAAGT+AGG | 0.476270 | 7_3:+132201 | Msa1087400:five_prime_UTR |
| TTTCTGGTTCAGGTACTTGG+TGG | 0.484362 | 7_3:+135142 | Msa1087400:intron |
| AGTAATGCCATGGTCACCTT+GGG | 0.485485 | 7_3:-135452 | None:intergenic |
| GACGACGGCGGTTGTGGTGG+TGG | 0.487789 | 7_3:-132363 | None:intergenic |
| TGAATCAATAAATTTAATTG+TGG | 0.490973 | 7_3:-136318 | None:intergenic |
| GAGACTGTTCTTCCAAAGAT+GGG | 0.491918 | 7_3:+134260 | Msa1087400:CDS |
| GTGGTTGTCGGTGGATGGAA+GGG | 0.492437 | 7_3:-132344 | None:intergenic |
| CAAATGAGGCAGCAATATAT+GGG | 0.493478 | 7_3:-136349 | None:intergenic |
| GTACTTGGTGGTTGCATCAG+TGG | 0.493649 | 7_3:+135154 | Msa1087400:CDS |
| TGGGGTTCCGACTCCGGTGC+CGG | 0.494956 | 7_3:+132566 | Msa1087400:CDS |
| TGCAAGGCTCCAACATCAGC+AGG | 0.497319 | 7_3:-134730 | None:intergenic |
| AGAACACCCAAATCAGTTCA+AGG | 0.499699 | 7_3:-137441 | None:intergenic |
| TGAATTATGATTGCATGTGT+TGG | 0.505745 | 7_3:+137499 | Msa1087400:three_prime_UTR |
| AGCTCATGTTCAGGATGACT+TGG | 0.511225 | 7_3:-136133 | None:intergenic |
| AATGACGACGGCGGTTGTGG+TGG | 0.517746 | 7_3:-132366 | None:intergenic |
| CAACTATCTTGATGGCATCT+GGG | 0.519100 | 7_3:+134141 | Msa1087400:CDS |
| ATGGCGCTGGTTCCAGCCGG+TGG | 0.519978 | 7_3:+134188 | Msa1087400:CDS |
| TCCTCCAAAACAGTACTGGT+TGG | 0.520178 | 7_3:-133987 | None:intergenic |
| TCATCATTTGGTTGGTGTAG+AGG | 0.521132 | 7_3:+132194 | Msa1087400:five_prime_UTR |
| TGGCTCTTTGAAGTTGATCT+CGG | 0.521731 | 7_3:+135174 | Msa1087400:CDS |
| CTGATGGCGCTGGTTCCAGC+CGG | 0.524673 | 7_3:+134185 | Msa1087400:CDS |
| CTGATTGTTACAGGAAGACT+AGG | 0.526898 | 7_3:+134228 | Msa1087400:CDS |
| TCTTCCAAAGATGGGGATCA+AGG | 0.529385 | 7_3:+134268 | Msa1087400:CDS |
| GTCACAAGATGTCCACCGGC+TGG | 0.532380 | 7_3:-134200 | None:intergenic |
| GTTGTCGGTGGATGGAAGGG+AGG | 0.538750 | 7_3:-132341 | None:intergenic |
| GACATCGCCATCGGCGACAT+CGG | 0.538785 | 7_3:-132643 | None:intergenic |
| GTTGTGGTGGTGGTTGTCGG+TGG | 0.540370 | 7_3:-132353 | None:intergenic |
| GCTTAATGTCAACACATCTC+AGG | 0.544187 | 7_3:-134899 | None:intergenic |
| TTGAATCAGTGAACTGGAAG+GGG | 0.544987 | 7_3:+134112 | Msa1087400:intron |
| GGACCTTCCTGCATCAGAAA+GGG | 0.545206 | 7_3:+137218 | Msa1087400:CDS |
| GGTGTAGAGGAAGTAGGTGT+AGG | 0.546764 | 7_3:+132207 | Msa1087400:five_prime_UTR |
| TAGTAATGCCATGGTCACCT+TGG | 0.546860 | 7_3:-135453 | None:intergenic |
| GGGACCTTCCTGCATCAGAA+AGG | 0.547983 | 7_3:+137217 | Msa1087400:intron |
| CCAAATCAGCACCAAGGGCA+AGG | 0.548480 | 7_3:-135001 | None:intergenic |
| AACAGAATTCAACCGGAATG+AGG | 0.549030 | 7_3:+135407 | Msa1087400:intron |
| CATCTCAGGAATGGATTGGT+AGG | 0.550373 | 7_3:-134885 | None:intergenic |
| CTTGCCATGAGGCAGATGAC+TGG | 0.550800 | 7_3:+136154 | Msa1087400:CDS |
| GCAAGGGCCTTCTGGTTCAA+AGG | 0.551371 | 7_3:-134984 | None:intergenic |
| TGGCCCTTTCTGATGCAGGA+AGG | 0.552383 | 7_3:-137221 | None:intergenic |
| GCAACAGCCGGCACCGGAGT+CGG | 0.552476 | 7_3:-132573 | None:intergenic |
| AGTTATGAATATGGGCGCTA+TGG | 0.552948 | 7_3:+133960 | Msa1087400:CDS |
| TATTATGCAGCTGAGAGACT+TGG | 0.553724 | 7_3:+133353 | Msa1087400:intron |
| TTTGGGCGGTGCTCTTAACC+CGG | 0.553808 | 7_3:+135219 | Msa1087400:CDS |
| TGTTGATGCAACAACTGCGC+CGG | 0.554809 | 7_3:+132602 | Msa1087400:CDS |
| GAGATGTGTTGACATTAAGC+TGG | 0.555073 | 7_3:+134902 | Msa1087400:CDS |
| TCAACAGCAGATGCAACAGC+CGG | 0.555637 | 7_3:-132585 | None:intergenic |
| GGCGGCGGCGGAGGAGAGGG+AGG | 0.557923 | 7_3:-132398 | None:intergenic |
| ATGTCAACACATCTCAGGAA+TGG | 0.560252 | 7_3:-134894 | None:intergenic |
| GTTGGAAATTGGGAGGAAAA+CGG | 0.561987 | 7_3:-132437 | None:intergenic |
| ATCTGCTTTGGAGCAGAACA+AGG | 0.562254 | 7_3:+134753 | Msa1087400:CDS |
| GCAGATGCAACAGCCGGCAC+CGG | 0.566723 | 7_3:-132579 | None:intergenic |
| AACGCGGTGGAAACTTGAAA+CGG | 0.568103 | 7_3:-132284 | None:intergenic |
| AACACATCTCAGGAATGGAT+TGG | 0.568381 | 7_3:-134889 | None:intergenic |
| CTGCTCCAAAGCAGATTGCA+AGG | 0.570077 | 7_3:-134746 | None:intergenic |
| GCGTCGAGGTCTAACGGCAC+CGG | 0.570156 | 7_3:-132621 | None:intergenic |
| TACCAGTAAGACAAAATGGC+TGG | 0.573561 | 7_3:-136398 | None:intergenic |
| CGTCGTAACTGCAGCAACAT+CGG | 0.574560 | 7_3:+132480 | Msa1087400:CDS |
| CTTTGGTGCTGAGTTGACGT+TGG | 0.575034 | 7_3:-132455 | None:intergenic |
| CAAATCAGCACCAAGGGCAA+GGG | 0.575071 | 7_3:-135000 | None:intergenic |
| GTGGTTGATCCTGCTGATGT+TGG | 0.576280 | 7_3:+134721 | Msa1087400:CDS |
| GCTCTCACAGCCACCAAATG+AGG | 0.577161 | 7_3:-136363 | None:intergenic |
| TAGGCAGAAGTGTTCACCAC+AGG | 0.578051 | 7_3:-133407 | None:intergenic |
| GCTGCTTCGTGGTCTAATGA+AGG | 0.578161 | 7_3:+132519 | Msa1087400:CDS |
| AAGGGAGGTGAAATCGGGAT+CGG | 0.583036 | 7_3:-132326 | None:intergenic |
| ACATCGGCGTCGAGGTCTAA+CGG | 0.585435 | 7_3:-132627 | None:intergenic |
| ATTGAATCAGTGAACTGGAA+GGG | 0.588819 | 7_3:+134111 | Msa1087400:intron |
| TAATGATAACAGTAATGCCA+TGG | 0.589814 | 7_3:+135512 | Msa1087400:CDS |
| CGTGGTCTAATGAAGGAACT+GGG | 0.591097 | 7_3:+132526 | Msa1087400:CDS |
| TGCAGCTGAGAGACTTGGTA+GGG | 0.591730 | 7_3:+133358 | Msa1087400:intron |
| TGCTACGCCTTTGAACCAGA+AGG | 0.592523 | 7_3:+134977 | Msa1087400:CDS |
| GAATGGATTGGTAGGAGACT+CGG | 0.593229 | 7_3:-134877 | None:intergenic |
| GAATTCAACCGGAATGAGGA+TGG | 0.593368 | 7_3:+135411 | Msa1087400:intron |
| CGAGCAAAGCCCCATTCTTG+TGG | 0.593385 | 7_3:-134938 | None:intergenic |
| AAAATATCATAGTAATGCCA+TGG | 0.594254 | 7_3:-135462 | None:intergenic |
| CATAACCAAATCAGCACCAA+GGG | 0.599807 | 7_3:-135006 | None:intergenic |
| AGGTGAAATCGGGATCGGAA+CGG | 0.600745 | 7_3:-132321 | None:intergenic |
| ATATCCGCGCAGCAAATACT+GGG | 0.603066 | 7_3:-137413 | None:intergenic |
| ATGCAGCTGAGAGACTTGGT+AGG | 0.605179 | 7_3:+133357 | Msa1087400:intron |
| TATTGAATCAGTGAACTGGA+AGG | 0.608896 | 7_3:+134110 | Msa1087400:intron |
| TGGTGGCTGTGAGAGCATTG+TGG | 0.610822 | 7_3:+136370 | Msa1087400:CDS |
| GGTAGGGCTATTGTGACTGA+TGG | 0.611008 | 7_3:+133374 | Msa1087400:CDS |
| AGTAGTCACAAGATGTCCAC+CGG | 0.611288 | 7_3:-134204 | None:intergenic |
| CTCGACGCCGATGTCGCCGA+TGG | 0.612253 | 7_3:+132636 | Msa1087400:CDS |
| TGCTAGCATAGTCTTGCTGA+TGG | 0.614200 | 7_3:+134169 | Msa1087400:CDS |
| AAAACCAGTCATCTGCCTCA+TGG | 0.617037 | 7_3:-136158 | None:intergenic |
| AAAACGAAGAATAAGAACTA+CGG | 0.621949 | 7_3:-132692 | None:intergenic |
| GAACAATCCCAAGGTGACCA+TGG | 0.622445 | 7_3:+135445 | Msa1087400:CDS |
| AGAACTTTGCCACAAGAATG+GGG | 0.622700 | 7_3:+134929 | Msa1087400:CDS |
| CCTTATTGAGCAGACATCCG+TGG | 0.625339 | 7_3:+134702 | Msa1087400:intron |
| GGGATCGGAACGGCATTCGA+AGG | 0.627492 | 7_3:-132311 | None:intergenic |
| GTAAGGCCATGGCAATGCCA+TGG | 0.630272 | 7_3:-135529 | None:intergenic |
| TGGCGATGTCGTCGAAAATG+GGG | 0.634408 | 7_3:+132656 | Msa1087400:CDS |
| GCAAGCAAAACGATTCATGC+CGG | 0.638119 | 7_3:+132726 | Msa1087400:CDS |
| AGTTGACGTTGGAAATTGGG+AGG | 0.639123 | 7_3:-132444 | None:intergenic |
| CACTCTTGTACGAAGTACAT+CGG | 0.640138 | 7_3:+135029 | Msa1087400:CDS |
| GTAATGCCATGGCATTGCCA+TGG | 0.641626 | 7_3:+135523 | Msa1087400:CDS |
| ATTGTCATAAATCTTCCACT+TGG | 0.643061 | 7_3:-137241 | None:intergenic |
| GAACCCCAGCGGTGTCGCTG+GGG | 0.643863 | 7_3:+132548 | Msa1087400:CDS |
| AGAAGTGTTCACCACAGGAG+TGG | 0.645583 | 7_3:-133402 | None:intergenic |
| CTGCATCAGAAAGGGCCAAG+TGG | 0.649606 | 7_3:+137226 | Msa1087400:CDS |
| AGACTGTTCTTCCAAAGATG+GGG | 0.658293 | 7_3:+134261 | Msa1087400:CDS |
| CATCGGCGACATCGGCGTCG+AGG | 0.660124 | 7_3:-132635 | None:intergenic |
| GAACCCCAGCGACACCGCTG+GGG | 0.678123 | 7_3:-132551 | None:intergenic |
| AGGTTGTTGGGAAATGACGA+CGG | 0.687100 | 7_3:-132378 | None:intergenic |
| GCATAACCAAATCAGCACCA+AGG | 0.689976 | 7_3:-135007 | None:intergenic |
| TGATGGAATTACCACTCCTG+TGG | 0.690564 | 7_3:+133391 | Msa1087400:CDS |
| AACATCAGCAGGATCAACCA+CGG | 0.691119 | 7_3:-134719 | None:intergenic |
| TCTTGTACGAAGTACATCGG+TGG | 0.698870 | 7_3:+135032 | Msa1087400:CDS |
| CTGAACATGAGCTTGCCATG+AGG | 0.711855 | 7_3:+136143 | Msa1087400:CDS |
| GGCATTCGAAGGTGAAAACG+CGG | 0.732442 | 7_3:-132300 | None:intergenic |
| GAAGGAACTGGGAACCCCAG+CGG | 0.741919 | 7_3:+132537 | Msa1087400:CDS |
| GGAAATTGGGAGGAAAACGG+AGG | 0.742920 | 7_3:-132434 | None:intergenic |
| TGAACCCAGTATTTGCTGCG+CGG | 0.744618 | 7_3:+137409 | Msa1087400:three_prime_UTR |
| ATTCGAAGGTGAAAACGCGG+TGG | 0.746724 | 7_3:-132297 | None:intergenic |
| TTGTTGGGAAATGACGACGG+CGG | 0.814028 | 7_3:-132375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTTTAATTT+TGG | + | chr7_3:133480-133499 | Msa1087400:intron | 0.0% |
| !! | CAATAATTCAAATAAAAAAA+AGG | - | chr7_3:135977-135996 | None:intergenic | 10.0% |
| !!! | ATTATTTACTTTTTCAATTT+GGG | + | chr7_3:136946-136965 | Msa1087400:intron | 10.0% |
| !!! | TTTTTGTTTAAAAAAAAAGT+TGG | - | chr7_3:137611-137630 | None:intergenic | 10.0% |
| !!! | TTTTTAAACAAAAATAATCT+AGG | + | chr7_3:137617-137636 | Msa1087400:three_prime_UTR | 10.0% |
| !!! | TTTTAAACAAAAATAATCTA+GGG | + | chr7_3:137618-137637 | Msa1087400:three_prime_UTR | 10.0% |
| !! | ATAATTAAAAATTCACATAC+CGG | - | chr7_3:132748-132767 | None:intergenic | 15.0% |
| !!! | TAGTTTTAATTTCAAAGATT+AGG | + | chr7_3:132884-132903 | Msa1087400:intron | 15.0% |
| !!! | AAAGATTAGGTTAATTTTAT+CGG | + | chr7_3:132897-132916 | Msa1087400:intron | 15.0% |
| !!! | TATATGAAGTTTTTGTTTTT+TGG | + | chr7_3:132955-132974 | Msa1087400:intron | 15.0% |
| !!! | TAATTTTATATGCTAAAAAG+TGG | + | chr7_3:133052-133071 | Msa1087400:intron | 15.0% |
| !!! | AATTTTATATGCTAAAAAGT+GGG | + | chr7_3:133053-133072 | Msa1087400:intron | 15.0% |
| !! | ATATATCCATTTCAAATATT+GGG | - | chr7_3:134576-134595 | None:intergenic | 15.0% |
| !!! | ACAATATAGTAATTGTTTTA+TGG | - | chr7_3:135300-135319 | None:intergenic | 15.0% |
| !!! | TATTTTAAAGACAAACAAAA+TGG | + | chr7_3:135763-135782 | Msa1087400:intron | 15.0% |
| !!! | CATTTTTAATATTAACCTTT+GGG | + | chr7_3:135896-135915 | Msa1087400:intron | 15.0% |
| !! | TGAATCAATAAATTTAATTG+TGG | - | chr7_3:136321-136340 | None:intergenic | 15.0% |
| !!! | GATTATTTACTTTTTCAATT+TGG | + | chr7_3:136945-136964 | Msa1087400:intron | 15.0% |
| !!! | TTACATTTTTATTATTTACC+TGG | + | chr7_3:137151-137170 | Msa1087400:intron | 15.0% |
| !!! | TACATTTTTATTATTTACCT+GGG | + | chr7_3:137152-137171 | Msa1087400:intron | 15.0% |
| !!! | AGGAATATAATTTTAGAAAG+TGG | + | chr7_3:133110-133129 | Msa1087400:intron | 20.0% |
| !!! | GGAATATAATTTTAGAAAGT+GGG | + | chr7_3:133111-133130 | Msa1087400:intron | 20.0% |
| !!! | TGAATGAATTTGTTATGTAA+GGG | + | chr7_3:133695-133714 | Msa1087400:intron | 20.0% |
| !!! | AATTGTTTTAATTGAAAGTG+TGG | + | chr7_3:134394-134413 | Msa1087400:intron | 20.0% |
| !!! | ATCATACTTTGTAATTTTGT+CGG | + | chr7_3:134542-134561 | Msa1087400:intron | 20.0% |
| !!! | TTTTAACCCAATATTTGAAA+TGG | + | chr7_3:134567-134586 | Msa1087400:intron | 20.0% |
| !! | GATATATCCATTTCAAATAT+TGG | - | chr7_3:134577-134596 | None:intergenic | 20.0% |
| !! | TTGAAATGGATATATCTAAT+TGG | + | chr7_3:134581-134600 | Msa1087400:intron | 20.0% |
| !!! | TGTAAACTATTTTAAAGAAC+AGG | - | chr7_3:135085-135104 | None:intergenic | 20.0% |
| !! | ATATTAAAAATGGAAAATGC+TGG | - | chr7_3:135888-135907 | None:intergenic | 20.0% |
| !! | CCAAAGGTTAATATTAAAAA+TGG | - | chr7_3:135898-135917 | None:intergenic | 20.0% |
| !!! | CCATTTTTAATATTAACCTT+TGG | + | chr7_3:135895-135914 | Msa1087400:intron | 20.0% |
| !!! | AACTTTCAATTCTATTTCTT+AGG | - | chr7_3:136801-136820 | None:intergenic | 20.0% |
| !! | AAGAAATAGAATTGAAAGTT+TGG | + | chr7_3:136801-136820 | Msa1087400:intron | 20.0% |
| ! | AAAACGAAGAATAAGAACTA+CGG | - | chr7_3:132695-132714 | None:intergenic | 25.0% |
| ! | TGGTTATATACTTTAGTCAA+AGG | + | chr7_3:133090-133109 | Msa1087400:intron | 25.0% |
| ! | AGTGGGTATCTAAAAAAAAT+TGG | + | chr7_3:133128-133147 | Msa1087400:intron | 25.0% |
| !! | AAATCTGAATCTTTCTCTTT+TGG | - | chr7_3:133211-133230 | None:intergenic | 25.0% |
| !! | AGCAGTTTTCTTAAAAAAGT+AGG | - | chr7_3:133429-133448 | None:intergenic | 25.0% |
| !!! | TGCTGATCTTATTGATTTTA+AGG | + | chr7_3:133445-133464 | Msa1087400:CDS | 25.0% |
| !!! | GTGAATGAATTTGTTATGTA+AGG | + | chr7_3:133694-133713 | Msa1087400:intron | 25.0% |
| ! | ATTAGAAAAACATTCATAGC+TGG | - | chr7_3:133910-133929 | None:intergenic | 25.0% |
| !! | TTCTAATTTTATCACATTGC+AGG | + | chr7_3:133923-133942 | Msa1087400:intron | 25.0% |
| ! | GTCAAACTAGTTATGAATAT+GGG | + | chr7_3:133952-133971 | Msa1087400:CDS | 25.0% |
| !! | TTGTAATATTTGAAATGCTG+TGG | + | chr7_3:134061-134080 | Msa1087400:intron | 25.0% |
| !! | TCATACTTTGTAATTTTGTC+GGG | + | chr7_3:134543-134562 | Msa1087400:intron | 25.0% |
| ! | AATGGATATATCTAATTGGT+TGG | + | chr7_3:134585-134604 | Msa1087400:intron | 25.0% |
| ! | ATGGATATATCTAATTGGTT+GGG | + | chr7_3:134586-134605 | Msa1087400:intron | 25.0% |
| !! | TCGAATTTTGCATCATATTT+TGG | + | chr7_3:135201-135220 | Msa1087400:CDS | 25.0% |
| !! | CGAATTTTGCATCATATTTT+GGG | + | chr7_3:135202-135221 | Msa1087400:CDS | 25.0% |
| ! | ACATATATCAATCAAGGAAT+CGG | - | chr7_3:135263-135282 | None:intergenic | 25.0% |
| ! | ATTTGCACATATATCAATCA+AGG | - | chr7_3:135269-135288 | None:intergenic | 25.0% |
| ! | AAAATATCATAGTAATGCCA+TGG | - | chr7_3:135465-135484 | None:intergenic | 25.0% |
| !!! | ACAAAGAAACTTTTCTGAAA+CGG | - | chr7_3:135718-135737 | None:intergenic | 25.0% |
| ! | GTAATAATGTGTTCTACTAT+AGG | + | chr7_3:135946-135965 | Msa1087400:intron | 25.0% |
| ! | ATCAGTGACATTATACAAAA+AGG | - | chr7_3:136021-136040 | None:intergenic | 25.0% |
| ! | ATGAAATCATGCTATCATTA+CGG | - | chr7_3:136048-136067 | None:intergenic | 25.0% |
| !! | TAGTATGTTGTTGTTAATCA+TGG | - | chr7_3:136076-136095 | None:intergenic | 25.0% |
| ! | AACAACATACTATTATTTGC+AGG | + | chr7_3:136084-136103 | Msa1087400:intron | 25.0% |
| !!! | TGCTATAACAAAAAGCATTA+TGG | - | chr7_3:136238-136257 | None:intergenic | 25.0% |
| ! | CTAAGAAAGATTTCATTACA+GGG | - | chr7_3:136507-136526 | None:intergenic | 25.0% |
| ! | ACTAAGAAAGATTTCATTAC+AGG | - | chr7_3:136508-136527 | None:intergenic | 25.0% |
| ! | GTAATGAAATCTTTCTTAGT+TGG | + | chr7_3:136508-136527 | Msa1087400:intron | 25.0% |
| ! | ATTTAATAGACACTTCCAAT+TGG | - | chr7_3:136682-136701 | None:intergenic | 25.0% |
| !!! | AATTGGAAGTGTCTATTAAA+TGG | + | chr7_3:136681-136700 | Msa1087400:intron | 25.0% |
| !!! | TAGAATGTTTTTTGGGAATT+GGG | + | chr7_3:136758-136777 | Msa1087400:intron | 25.0% |
| !!! | TAGAATTGAAAGTTTGGTTT+TGG | + | chr7_3:136807-136826 | Msa1087400:intron | 25.0% |
| ! | GAAGAGATATATCAAGTAAA+TGG | - | chr7_3:136980-136999 | None:intergenic | 25.0% |
| ! | TTAATAGAAGTGAAAGTGAA+GGG | - | chr7_3:137006-137025 | None:intergenic | 25.0% |
| ! | TTTAATAGAAGTGAAAGTGA+AGG | - | chr7_3:137007-137026 | None:intergenic | 25.0% |
| ! | AATAATGAATAGTGCCTATA+TGG | - | chr7_3:137337-137356 | None:intergenic | 25.0% |
| ! | GAGAAAAAGATAAATGTTTG+CGG | - | chr7_3:137362-137381 | None:intergenic | 25.0% |
| ! | ATTAATTCCTTGAACTGATT+TGG | + | chr7_3:137434-137453 | Msa1087400:three_prime_UTR | 25.0% |
| !! | TTAATTCCTTGAACTGATTT+GGG | + | chr7_3:137435-137454 | Msa1087400:three_prime_UTR | 25.0% |
| !! | CACTTCAACATTACAATTTT+AGG | - | chr7_3:137564-137583 | None:intergenic | 25.0% |
| ! | TAAACAAAAATAATCTAGGG+TGG | + | chr7_3:137621-137640 | Msa1087400:three_prime_UTR | 25.0% |
| !! | TTGATTATGGCTTATTTCTT+GGG | - | chr7_3:137651-137670 | None:intergenic | 25.0% |
| !! | TTTGATTATGGCTTATTTCT+TGG | - | chr7_3:137652-137671 | None:intergenic | 25.0% |
| AGTGGGTGAGTATATAAAAA+TGG | + | chr7_3:133070-133089 | Msa1087400:intron | 30.0% | |
| ! | TGGTACAAAAAACTCAGTTT+TGG | - | chr7_3:133191-133210 | None:intergenic | 30.0% |
| !!! | TGTGTTGATTGATGAGTTTT+TGG | + | chr7_3:133322-133341 | Msa1087400:intron | 30.0% |
| TTCAATGTAATCACATGTGT+TGG | + | chr7_3:133596-133615 | Msa1087400:intron | 30.0% | |
| !! | ATTTGTTATGTAAGGGAATG+AGG | + | chr7_3:133702-133721 | Msa1087400:intron | 30.0% |
| ! | TTTGTTATGTAAGGGAATGA+GGG | + | chr7_3:133703-133722 | Msa1087400:intron | 30.0% |
| CAGATGATTTAAGAAATCTG+AGG | - | chr7_3:133841-133860 | None:intergenic | 30.0% | |
| CGTCAAACTAGTTATGAATA+TGG | + | chr7_3:133951-133970 | Msa1087400:CDS | 30.0% | |
| TCATTATTGAATCAGTGAAC+TGG | + | chr7_3:134106-134125 | Msa1087400:intron | 30.0% | |
| !! | TGTGAATTCATTGATTTGTG+TGG | + | chr7_3:134293-134312 | Msa1087400:intron | 30.0% |
| ! | TTTTATGTTCCCGTGTTTTT+AGG | + | chr7_3:134354-134373 | Msa1087400:intron | 30.0% |
| ! | TCTTCCTGGAAATTTTTATG+TGG | + | chr7_3:134463-134482 | Msa1087400:intron | 30.0% |
| ! | CATACTTTGTAATTTTGTCG+GGG | + | chr7_3:134544-134563 | Msa1087400:intron | 30.0% |
| ! | TTAGTGTTGGGAAGATTAAT+TGG | + | chr7_3:134776-134795 | Msa1087400:intron | 30.0% |
| TAGATACTGTAGAATTCTGA+TGG | + | chr7_3:134820-134839 | Msa1087400:intron | 30.0% | |
| !!! | AACCAGAAAGAAGTGTTTTT+AGG | - | chr7_3:135131-135150 | None:intergenic | 30.0% |
| !! | ATTTTGCATCATATTTTGGG+CGG | + | chr7_3:135205-135224 | Msa1087400:CDS | 30.0% |
| CATATATCAATCAAGGAATC+GGG | - | chr7_3:135262-135281 | None:intergenic | 30.0% | |
| GTACATAAACAGAATTCAAC+CGG | + | chr7_3:135400-135419 | Msa1087400:intron | 30.0% | |
| !! | TTGGGATTGTTCTAAAAGTT+TGG | - | chr7_3:135437-135456 | None:intergenic | 30.0% |
| !!! | AAACTTTTAGAACAATCCCA+AGG | + | chr7_3:135436-135455 | Msa1087400:CDS | 30.0% |
| TAATGATAACAGTAATGCCA+TGG | + | chr7_3:135512-135531 | Msa1087400:CDS | 30.0% | |
| AAAAATTCATAGTAAGGCCA+TGG | - | chr7_3:135543-135562 | None:intergenic | 30.0% | |
| CCTGAGAAAAATTCATAGTA+AGG | - | chr7_3:135549-135568 | None:intergenic | 30.0% | |
| ! | CCTTACTATGAATTTTTCTC+AGG | + | chr7_3:135546-135565 | Msa1087400:CDS | 30.0% |
| ! | TATGAATTTTTCTCAGGTAC+TGG | + | chr7_3:135552-135571 | Msa1087400:intron | 30.0% |
| ! | ATGAATTTTTCTCAGGTACT+GGG | + | chr7_3:135553-135572 | Msa1087400:intron | 30.0% |
| ! | GTTCCATATCTTGATTTTAG+CGG | + | chr7_3:135785-135804 | Msa1087400:intron | 30.0% |
| !! | TTCCATATCTTGATTTTAGC+GGG | + | chr7_3:135786-135805 | Msa1087400:intron | 30.0% |
| ! | GGAATTGCTATTCAAATTTG+TGG | + | chr7_3:136205-136224 | Msa1087400:intron | 30.0% |
| !! | GCTTTTTGTTATAGCATAGT+TGG | + | chr7_3:136242-136261 | Msa1087400:intron | 30.0% |
| GATCTCAACAATTTCAAACA+AGG | - | chr7_3:136551-136570 | None:intergenic | 30.0% | |
| CTATTAAATGGAGAGGATAT+TGG | + | chr7_3:136693-136712 | Msa1087400:intron | 30.0% | |
| AAAAGAAAGAAACAACCATG+TGG | + | chr7_3:136730-136749 | Msa1087400:intron | 30.0% | |
| AAAGAAAGAAACAACCATGT+GGG | + | chr7_3:136731-136750 | Msa1087400:intron | 30.0% | |
| !!! | TGGGATAGTAGAATGTTTTT+TGG | + | chr7_3:136750-136769 | Msa1087400:intron | 30.0% |
| !!! | GGGATAGTAGAATGTTTTTT+GGG | + | chr7_3:136751-136770 | Msa1087400:intron | 30.0% |
| !!! | GTAGAATGTTTTTTGGGAAT+TGG | + | chr7_3:136757-136776 | Msa1087400:intron | 30.0% |
| ACAGAAAACACTTCACTAAT+TGG | + | chr7_3:136842-136861 | Msa1087400:intron | 30.0% | |
| AAACACTTCACTAATTGGAA+AGG | + | chr7_3:136847-136866 | Msa1087400:intron | 30.0% | |
| ! | ATGTTGACTAATCATAGCAA+TGG | - | chr7_3:136924-136943 | None:intergenic | 30.0% |
| ! | ATTGCTATGATTAGTCAACA+TGG | + | chr7_3:136923-136942 | Msa1087400:intron | 30.0% |
| ATAGGATGACAAAACAAAGT+GGG | - | chr7_3:137079-137098 | None:intergenic | 30.0% | |
| AATAGGATGACAAAACAAAG+TGG | - | chr7_3:137080-137099 | None:intergenic | 30.0% | |
| AAGAAACATGAGTCGAAAAT+AGG | - | chr7_3:137097-137116 | None:intergenic | 30.0% | |
| ! | TTTTCATGTATTCTGCAACA+GGG | + | chr7_3:137197-137216 | Msa1087400:intron | 30.0% |
| ATTGTCATAAATCTTCCACT+TGG | - | chr7_3:137244-137263 | None:intergenic | 30.0% | |
| GTGGAAGATTTATGACAATT+TGG | + | chr7_3:137245-137264 | Msa1087400:CDS | 30.0% | |
| !!! | CTTTGGAATTGAAGATTTTG+AGG | + | chr7_3:137278-137297 | Msa1087400:CDS | 30.0% |
| !! | TGAAGATTTTGAGGATTTGA+AGG | + | chr7_3:137287-137306 | Msa1087400:CDS | 30.0% |
| TGAATTATGATTGCATGTGT+TGG | + | chr7_3:137499-137518 | Msa1087400:three_prime_UTR | 30.0% | |
| GAATTATGATTGCATGTGTT+GGG | + | chr7_3:137500-137519 | Msa1087400:three_prime_UTR | 30.0% | |
| ! | TTGGGCTTGTTTAAGAAAAA+TGG | + | chr7_3:137518-137537 | Msa1087400:three_prime_UTR | 30.0% |
| AAGCCATAATCAAAGATCTA+AGG | + | chr7_3:137658-137677 | Msa1087400:three_prime_UTR | 30.0% | |
| ! | TAGCCTTAGATCTTTGATTA+TGG | - | chr7_3:137664-137683 | None:intergenic | 30.0% |
| !!! | TTTTTTGTGTCGTTTTGGTG+TGG | - | chr7_3:132261-132280 | None:intergenic | 35.0% |
| CACCAAAACGACACAAAAAA+TGG | + | chr7_3:132261-132280 | Msa1087400:five_prime_UTR | 35.0% | |
| ! | ATGAATCGTTTTGCTTGCAT+CGG | - | chr7_3:132724-132743 | None:intergenic | 35.0% |
| AGAATGCAATCACATGTATC+AGG | - | chr7_3:133814-133833 | None:intergenic | 35.0% | |
| TGCTGTGGTTGAATTTAATG+AGG | + | chr7_3:134076-134095 | Msa1087400:intron | 35.0% | |
| TATTGAATCAGTGAACTGGA+AGG | + | chr7_3:134110-134129 | Msa1087400:intron | 35.0% | |
| ATTGAATCAGTGAACTGGAA+GGG | + | chr7_3:134111-134130 | Msa1087400:intron | 35.0% | |
| ! | TGACTACTACTGATTGTTAC+AGG | + | chr7_3:134219-134238 | Msa1087400:CDS | 35.0% |
| TCTGAGTTACCTAAAAACAC+GGG | - | chr7_3:134366-134385 | None:intergenic | 35.0% | |
| CTCTGAGTTACCTAAAAACA+CGG | - | chr7_3:134367-134386 | None:intergenic | 35.0% | |
| AGACAAGTAGGAGCTAATTA+AGG | - | chr7_3:134446-134465 | None:intergenic | 35.0% | |
| AAATTTCCAGGAAGACAAGT+AGG | - | chr7_3:134458-134477 | None:intergenic | 35.0% | |
| CTCTCCACATAAAAATTTCC+AGG | - | chr7_3:134470-134489 | None:intergenic | 35.0% | |
| TATATCTAATTGGTTGGGTG+TGG | + | chr7_3:134591-134610 | Msa1087400:intron | 35.0% | |
| !!! | ATGGTTTTGTACAAATGTGC+AGG | + | chr7_3:134839-134858 | Msa1087400:intron | 35.0% |
| GACCTAAAAACACTTCTTTC+TGG | + | chr7_3:135126-135145 | Msa1087400:intron | 35.0% | |
| !! | AAAACACTTCTTTCTGGTTC+AGG | + | chr7_3:135132-135151 | Msa1087400:intron | 35.0% |
| TTTATCCCTCATGTCTGAAT+AGG | - | chr7_3:135364-135383 | None:intergenic | 35.0% | |
| TTCCCGCTAAAATCAAGATA+TGG | - | chr7_3:135791-135810 | None:intergenic | 35.0% | |
| GGTGATAAATAGCCAATAAG+CGG | + | chr7_3:135824-135843 | Msa1087400:intron | 35.0% | |
| TTGCCTATAATGCAGATTGA+TGG | + | chr7_3:136284-136303 | Msa1087400:intron | 35.0% | |
| TCTCCATCAATCTGCATTAT+AGG | - | chr7_3:136290-136309 | None:intergenic | 35.0% | |
| CAAATGAGGCAGCAATATAT+GGG | - | chr7_3:136352-136371 | None:intergenic | 35.0% | |
| TGAGTACCAGTAAGACAAAA+TGG | - | chr7_3:136405-136424 | None:intergenic | 35.0% | |
| TTGTCTTACTGGTACTCATT+TGG | + | chr7_3:136407-136426 | Msa1087400:intron | 35.0% | |
| ACATTACTTGTCATGTGCTA+TGG | + | chr7_3:136465-136484 | Msa1087400:intron | 35.0% | |
| TTACAGGGTCACATTCAAAT+AGG | - | chr7_3:136492-136511 | None:intergenic | 35.0% | |
| TTAGTCTATCTCTCTCCAAA+TGG | - | chr7_3:136596-136615 | None:intergenic | 35.0% | |
| TTTGGAGAGAGATAGACTAA+TGG | + | chr7_3:136596-136615 | Msa1087400:intron | 35.0% | |
| CTATCTATTCTCTCTCCAAT+TGG | + | chr7_3:136664-136683 | Msa1087400:intron | 35.0% | |
| ! | GAAGTGTCTATTAAATGGAG+AGG | + | chr7_3:136686-136705 | Msa1087400:intron | 35.0% |
| AATGGAGAGGATATTGGAAT+AGG | + | chr7_3:136699-136718 | Msa1087400:intron | 35.0% | |
| ATGGAGAGGATATTGGAATA+GGG | + | chr7_3:136700-136719 | Msa1087400:intron | 35.0% | |
| AAACATTCTACTATCCCACA+TGG | - | chr7_3:136748-136767 | None:intergenic | 35.0% | |
| TTCTTAGGAGTTCCAAACAA+GGG | - | chr7_3:136786-136805 | None:intergenic | 35.0% | |
| TTTCTTAGGAGTTCCAAACA+AGG | - | chr7_3:136787-136806 | None:intergenic | 35.0% | |
| ! | AAGTGTTTTCTGTAGTAGGA+GGG | - | chr7_3:136835-136854 | None:intergenic | 35.0% |
| !! | AGTGAAGTGTTTTCTGTAGT+AGG | - | chr7_3:136839-136858 | None:intergenic | 35.0% |
| ! | CTTTTCATGTATTCTGCAAC+AGG | + | chr7_3:137196-137215 | Msa1087400:intron | 35.0% |
| ! | AATTTGGTTCGATTCAGCTT+TGG | + | chr7_3:137261-137280 | Msa1087400:CDS | 35.0% |
| ! | TTCTCTCTTGTTATCTTGTC+TGG | + | chr7_3:137467-137486 | Msa1087400:three_prime_UTR | 35.0% |
| ! | TCATCATTTGGTTGGTGTAG+AGG | + | chr7_3:132194-132213 | Msa1087400:five_prime_UTR | 40.0% |
| ! | TGGTGTGGTTAGGTTTTTCT+TGG | - | chr7_3:132246-132265 | None:intergenic | 40.0% |
| !!! | GGCCATTTTTTGTGTCGTTT+TGG | - | chr7_3:132266-132285 | None:intergenic | 40.0% |
| GTTGGAAATTGGGAGGAAAA+CGG | - | chr7_3:132440-132459 | None:intergenic | 40.0% | |
| ! | CTGAGTTGACGTTGGAAATT+GGG | - | chr7_3:132450-132469 | None:intergenic | 40.0% |
| TATTATGCAGCTGAGAGACT+TGG | + | chr7_3:133353-133372 | Msa1087400:intron | 40.0% | |
| ! | CAATCGACACTTTTGATCGA+AGG | - | chr7_3:133657-133676 | None:intergenic | 40.0% |
| !! | TAGCACCGACACTTTATTGA+GGG | + | chr7_3:133754-133773 | Msa1087400:intron | 40.0% |
| ACATGCCCTCAATAAAGTGT+CGG | - | chr7_3:133762-133781 | None:intergenic | 40.0% | |
| ! | TGAGGGCATGTTTGAAGTTT+CGG | + | chr7_3:133771-133790 | Msa1087400:intron | 40.0% |
| ACAATACCAACACTGACACA+TGG | - | chr7_3:133867-133886 | None:intergenic | 40.0% | |
| AGTTATGAATATGGGCGCTA+TGG | + | chr7_3:133960-133979 | Msa1087400:CDS | 40.0% | |
| !!! | CTGTTTTGGAGGAGAAGATA+AGG | + | chr7_3:133997-134016 | Msa1087400:CDS | 40.0% |
| TTGAATCAGTGAACTGGAAG+GGG | + | chr7_3:134112-134131 | Msa1087400:intron | 40.0% | |
| ! | TCAACTATCTTGATGGCATC+TGG | + | chr7_3:134140-134159 | Msa1087400:CDS | 40.0% |
| ! | CAACTATCTTGATGGCATCT+GGG | + | chr7_3:134141-134160 | Msa1087400:CDS | 40.0% |
| CTGATTGTTACAGGAAGACT+AGG | + | chr7_3:134228-134247 | Msa1087400:CDS | 40.0% | |
| AGAGACTGTTCTTCCAAAGA+TGG | + | chr7_3:134259-134278 | Msa1087400:CDS | 40.0% | |
| GAGACTGTTCTTCCAAAGAT+GGG | + | chr7_3:134260-134279 | Msa1087400:CDS | 40.0% | |
| AGACTGTTCTTCCAAAGATG+GGG | + | chr7_3:134261-134280 | Msa1087400:CDS | 40.0% | |
| GTTATGCTTCCTTTCTGAAC+TGG | + | chr7_3:134623-134642 | Msa1087400:intron | 40.0% | |
| AGCAGAACAAGGTTAGTGTT+GGG | + | chr7_3:134764-134783 | Msa1087400:intron | 40.0% | |
| AACACATCTCAGGAATGGAT+TGG | - | chr7_3:134892-134911 | None:intergenic | 40.0% | |
| ATGTCAACACATCTCAGGAA+TGG | - | chr7_3:134897-134916 | None:intergenic | 40.0% | |
| GCTTAATGTCAACACATCTC+AGG | - | chr7_3:134902-134921 | None:intergenic | 40.0% | |
| ! | GAGATGTGTTGACATTAAGC+TGG | + | chr7_3:134902-134921 | Msa1087400:CDS | 40.0% |
| TCAGAACTTTGCCACAAGAA+TGG | + | chr7_3:134927-134946 | Msa1087400:CDS | 40.0% | |
| CAGAACTTTGCCACAAGAAT+GGG | + | chr7_3:134928-134947 | Msa1087400:CDS | 40.0% | |
| AGAACTTTGCCACAAGAATG+GGG | + | chr7_3:134929-134948 | Msa1087400:CDS | 40.0% | |
| CATAACCAAATCAGCACCAA+GGG | - | chr7_3:135009-135028 | None:intergenic | 40.0% | |
| CACTCTTGTACGAAGTACAT+CGG | + | chr7_3:135029-135048 | Msa1087400:CDS | 40.0% | |
| !! | TTCTTTCTGGTTCAGGTACT+TGG | + | chr7_3:135139-135158 | Msa1087400:intron | 40.0% |
| !! | TGGCTCTTTGAAGTTGATCT+CGG | + | chr7_3:135174-135193 | Msa1087400:CDS | 40.0% |
| GCTTGTAGTAATGACTAACC+GGG | - | chr7_3:135240-135259 | None:intergenic | 40.0% | |
| GGCTTGTAGTAATGACTAAC+CGG | - | chr7_3:135241-135260 | None:intergenic | 40.0% | |
| TAACATGTTCGCACTATGTC+AGG | - | chr7_3:135324-135343 | None:intergenic | 40.0% | |
| TGCATACCTATTCAGACATG+AGG | + | chr7_3:135355-135374 | Msa1087400:intron | 40.0% | |
| GCATACCTATTCAGACATGA+GGG | + | chr7_3:135356-135375 | Msa1087400:intron | 40.0% | |
| AACAGAATTCAACCGGAATG+AGG | + | chr7_3:135407-135426 | Msa1087400:intron | 40.0% | |
| CTTAAGCACATCAATCCCAA+AGG | - | chr7_3:135914-135933 | None:intergenic | 40.0% | |
| !! | GATGTGCTTAAGCTGTTTTG+TGG | + | chr7_3:135922-135941 | Msa1087400:intron | 40.0% |
| CCAAATGAGGCAGCAATATA+TGG | - | chr7_3:136353-136372 | None:intergenic | 40.0% | |
| CCATATATTGCTGCCTCATT+TGG | + | chr7_3:136350-136369 | Msa1087400:CDS | 40.0% | |
| TATATTGCTGCCTCATTTGG+TGG | + | chr7_3:136353-136372 | Msa1087400:CDS | 40.0% | |
| !! | AACCAGCCATTTTGTCTTAC+TGG | + | chr7_3:136396-136415 | Msa1087400:CDS | 40.0% |
| TACCAGTAAGACAAAATGGC+TGG | - | chr7_3:136401-136420 | None:intergenic | 40.0% | |
| ! | AACAAGGCGTAAAAGCACAA+AGG | - | chr7_3:136535-136554 | None:intergenic | 40.0% |
| TTGAGATCCTCTCCATTTGA+TGG | + | chr7_3:136563-136582 | Msa1087400:intron | 40.0% | |
| TGAGATCCTCTCCATTTGAT+GGG | + | chr7_3:136564-136583 | Msa1087400:intron | 40.0% | |
| !! | AATGGAAGTGTCCCATCAAA+TGG | - | chr7_3:136578-136597 | None:intergenic | 40.0% |
| TTTGATGGGACACTTCCATT+TGG | + | chr7_3:136578-136597 | Msa1087400:intron | 40.0% | |
| !! | GAAGTGTTTTCTGTAGTAGG+AGG | - | chr7_3:136836-136855 | None:intergenic | 40.0% |
| AATCATAGCAATGGCATGAG+TGG | - | chr7_3:136915-136934 | None:intergenic | 40.0% | |
| AGAACACCCAAATCAGTTCA+AGG | - | chr7_3:137444-137463 | None:intergenic | 40.0% | |
| ! | TTGGTTGGTGTAGAGGAAGT+AGG | + | chr7_3:132201-132220 | Msa1087400:five_prime_UTR | 45.0% |
| !!! | TGTGTCGTTTTGGTGTGGTT+AGG | - | chr7_3:132256-132275 | None:intergenic | 45.0% |
| AACGCGGTGGAAACTTGAAA+CGG | - | chr7_3:132287-132306 | None:intergenic | 45.0% | |
| AGGTTGTTGGGAAATGACGA+CGG | - | chr7_3:132381-132400 | None:intergenic | 45.0% | |
| AGTTGACGTTGGAAATTGGG+AGG | - | chr7_3:132447-132466 | None:intergenic | 45.0% | |
| ! | GCTGAGTTGACGTTGGAAAT+TGG | - | chr7_3:132451-132470 | None:intergenic | 45.0% |
| TCGTGGTCTAATGAAGGAAC+TGG | + | chr7_3:132525-132544 | Msa1087400:CDS | 45.0% | |
| CGTGGTCTAATGAAGGAACT+GGG | + | chr7_3:132526-132545 | Msa1087400:CDS | 45.0% | |
| ! | ATTTTCGACGACATCGCCAT+CGG | - | chr7_3:132655-132674 | None:intergenic | 45.0% |
| ATGGCGATGTCGTCGAAAAT+GGG | + | chr7_3:132655-132674 | Msa1087400:CDS | 45.0% | |
| GCAAGCAAAACGATTCATGC+CGG | + | chr7_3:132726-132745 | Msa1087400:CDS | 45.0% | |
| TGATGGAATTACCACTCCTG+TGG | + | chr7_3:133391-133410 | Msa1087400:CDS | 45.0% | |
| TACTTGTAAGCCACGAAGCA+CGG | + | chr7_3:133518-133537 | Msa1087400:intron | 45.0% | |
| CACTGACACTTGTCAGACAT+TGG | + | chr7_3:133626-133645 | Msa1087400:intron | 45.0% | |
| !! | GTAGCACCGACACTTTATTG+AGG | + | chr7_3:133753-133772 | Msa1087400:intron | 45.0% |
| ! | CAACCCAACCAGTACTGTTT+TGG | + | chr7_3:133983-134002 | Msa1087400:CDS | 45.0% |
| !! | CCTCCAAAACAGTACTGGTT+GGG | - | chr7_3:133989-134008 | None:intergenic | 45.0% |
| !! | TCCTCCAAAACAGTACTGGT+TGG | - | chr7_3:133990-134009 | None:intergenic | 45.0% |
| CTTCTCCTCCAAAACAGTAC+TGG | - | chr7_3:133994-134013 | None:intergenic | 45.0% | |
| GGCTGAGTCAACTATCTTGA+TGG | + | chr7_3:134133-134152 | Msa1087400:CDS | 45.0% | |
| ! | TGCTAGCATAGTCTTGCTGA+TGG | + | chr7_3:134169-134188 | Msa1087400:CDS | 45.0% |
| AGTAGTCACAAGATGTCCAC+CGG | - | chr7_3:134207-134226 | None:intergenic | 45.0% | |
| TCTTCCAAAGATGGGGATCA+AGG | + | chr7_3:134268-134287 | Msa1087400:CDS | 45.0% | |
| CATACCTTGATCCCCATCTT+TGG | - | chr7_3:134275-134294 | None:intergenic | 45.0% | |
| TTAGCTCCTACTTGTCTTCC+TGG | + | chr7_3:134449-134468 | Msa1087400:intron | 45.0% | |
| ATCTAATTGGTTGGGTGTGG+TGG | + | chr7_3:134594-134613 | Msa1087400:intron | 45.0% | |
| AACATCAGCAGGATCAACCA+CGG | - | chr7_3:134722-134741 | None:intergenic | 45.0% | |
| !! | ATCTGCTTTGGAGCAGAACA+AGG | + | chr7_3:134753-134772 | Msa1087400:CDS | 45.0% |
| GAGCAGAACAAGGTTAGTGT+TGG | + | chr7_3:134763-134782 | Msa1087400:intron | 45.0% | |
| !! | GAATGGATTGGTAGGAGACT+CGG | - | chr7_3:134880-134899 | None:intergenic | 45.0% |
| !! | CATCTCAGGAATGGATTGGT+AGG | - | chr7_3:134888-134907 | None:intergenic | 45.0% |
| GCATAACCAAATCAGCACCA+AGG | - | chr7_3:135010-135029 | None:intergenic | 45.0% | |
| TCTTGTACGAAGTACATCGG+TGG | + | chr7_3:135032-135051 | Msa1087400:CDS | 45.0% | |
| !! | TTTCTGGTTCAGGTACTTGG+TGG | + | chr7_3:135142-135161 | Msa1087400:intron | 45.0% |
| GAATTCAACCGGAATGAGGA+TGG | + | chr7_3:135411-135430 | Msa1087400:intron | 45.0% | |
| AAGTTTGGCCATCCTCATTC+CGG | - | chr7_3:135422-135441 | None:intergenic | 45.0% | |
| AGTAATGCCATGGTCACCTT+GGG | - | chr7_3:135455-135474 | None:intergenic | 45.0% | |
| TAGTAATGCCATGGTCACCT+TGG | - | chr7_3:135456-135475 | None:intergenic | 45.0% | |
| ! | AGCGGGAAACAAAAGTGCAA+AGG | + | chr7_3:135803-135822 | Msa1087400:intron | 45.0% |
| GGATCACAGATACCGCTTAT+TGG | - | chr7_3:135839-135858 | None:intergenic | 45.0% | |
| GCGAGAGTTTCTATCCTGAA+TGG | - | chr7_3:135860-135879 | None:intergenic | 45.0% | |
| AGCTCATGTTCAGGATGACT+TGG | - | chr7_3:136136-136155 | None:intergenic | 45.0% | |
| AAAACCAGTCATCTGCCTCA+TGG | - | chr7_3:136161-136180 | None:intergenic | 45.0% | |
| !!! | ATGAGGCAGATGACTGGTTT+TGG | + | chr7_3:136160-136179 | Msa1087400:CDS | 45.0% |
| !!! | TGAGGCAGATGACTGGTTTT+GGG | + | chr7_3:136161-136180 | Msa1087400:CDS | 45.0% |
| AAGTGTCCCATCAAATGGAG+AGG | - | chr7_3:136573-136592 | None:intergenic | 45.0% | |
| TTTGAAGGCTGATGTCTTGC+AGG | + | chr7_3:137302-137321 | Msa1087400:CDS | 45.0% | |
| ATATCCGCGCAGCAAATACT+GGG | - | chr7_3:137416-137435 | None:intergenic | 45.0% | |
| AATATCCGCGCAGCAAATAC+TGG | - | chr7_3:137417-137436 | None:intergenic | 45.0% | |
| !! | TCATAATAAAAAAAAAAAAA+AGG | - | chr7_3:136888-136907 | None:intergenic | 5.0% |
| GGTGTAGAGGAAGTAGGTGT+AGG | + | chr7_3:132207-132226 | Msa1087400:five_prime_UTR | 50.0% | |
| ATTCGAAGGTGAAAACGCGG+TGG | - | chr7_3:132300-132319 | None:intergenic | 50.0% | |
| GGCATTCGAAGGTGAAAACG+CGG | - | chr7_3:132303-132322 | None:intergenic | 50.0% | |
| AGGTGAAATCGGGATCGGAA+CGG | - | chr7_3:132324-132343 | None:intergenic | 50.0% | |
| AAGGGAGGTGAAATCGGGAT+CGG | - | chr7_3:132329-132348 | None:intergenic | 50.0% | |
| GATGGAAGGGAGGTGAAATC+GGG | - | chr7_3:132334-132353 | None:intergenic | 50.0% | |
| GGATGGAAGGGAGGTGAAAT+CGG | - | chr7_3:132335-132354 | None:intergenic | 50.0% | |
| TTGTTGGGAAATGACGACGG+CGG | - | chr7_3:132378-132397 | None:intergenic | 50.0% | |
| TTGGGAGGAAAACGGAGGAT+GGG | - | chr7_3:132432-132451 | None:intergenic | 50.0% | |
| ATTGGGAGGAAAACGGAGGA+TGG | - | chr7_3:132433-132452 | None:intergenic | 50.0% | |
| GGAAATTGGGAGGAAAACGG+AGG | - | chr7_3:132437-132456 | None:intergenic | 50.0% | |
| !! | CTTTGGTGCTGAGTTGACGT+TGG | - | chr7_3:132458-132477 | None:intergenic | 50.0% |
| CGTCGTAACTGCAGCAACAT+CGG | + | chr7_3:132480-132499 | Msa1087400:CDS | 50.0% | |
| GCTGCTTCGTGGTCTAATGA+AGG | + | chr7_3:132519-132538 | Msa1087400:CDS | 50.0% | |
| TCAACAGCAGATGCAACAGC+CGG | - | chr7_3:132588-132607 | None:intergenic | 50.0% | |
| TGTTGATGCAACAACTGCGC+CGG | + | chr7_3:132602-132621 | Msa1087400:CDS | 50.0% | |
| GATGGCGATGTCGTCGAAAA+TGG | + | chr7_3:132654-132673 | Msa1087400:CDS | 50.0% | |
| TGGCGATGTCGTCGAAAATG+GGG | + | chr7_3:132656-132675 | Msa1087400:CDS | 50.0% | |
| ! | ATGCAGCTGAGAGACTTGGT+AGG | + | chr7_3:133357-133376 | Msa1087400:intron | 50.0% |
| ! | TGCAGCTGAGAGACTTGGTA+GGG | + | chr7_3:133358-133377 | Msa1087400:intron | 50.0% |
| GGTAGGGCTATTGTGACTGA+TGG | + | chr7_3:133374-133393 | Msa1087400:CDS | 50.0% | |
| !! | AGAAGTGTTCACCACAGGAG+TGG | - | chr7_3:133405-133424 | None:intergenic | 50.0% |
| !! | TAGGCAGAAGTGTTCACCAC+AGG | - | chr7_3:133410-133429 | None:intergenic | 50.0% |
| CTGTGTCCATGTGTCAGTGT+TGG | + | chr7_3:133858-133877 | Msa1087400:intron | 50.0% | |
| !! | CCCAACCAGTACTGTTTTGG+AGG | + | chr7_3:133986-134005 | Msa1087400:CDS | 50.0% |
| CTGCAAGTGCCAGTTCAGAA+AGG | - | chr7_3:134635-134654 | None:intergenic | 50.0% | |
| CCACGGATGTCTGCTCAATA+AGG | - | chr7_3:134705-134724 | None:intergenic | 50.0% | |
| CCTTATTGAGCAGACATCCG+TGG | + | chr7_3:134702-134721 | Msa1087400:intron | 50.0% | |
| GTGGTTGATCCTGCTGATGT+TGG | + | chr7_3:134721-134740 | Msa1087400:CDS | 50.0% | |
| TGGAGCCTTGCAATCTGCTT+TGG | + | chr7_3:134741-134760 | Msa1087400:CDS | 50.0% | |
| CTGCTCCAAAGCAGATTGCA+AGG | - | chr7_3:134749-134768 | None:intergenic | 50.0% | |
| TGCTACGCCTTTGAACCAGA+AGG | + | chr7_3:134977-134996 | Msa1087400:CDS | 50.0% | |
| CAAATCAGCACCAAGGGCAA+GGG | - | chr7_3:135003-135022 | None:intergenic | 50.0% | |
| ! | GTACTTGGTGGTTGCATCAG+TGG | + | chr7_3:135154-135173 | Msa1087400:CDS | 50.0% |
| GAACAATCCCAAGGTGACCA+TGG | + | chr7_3:135445-135464 | Msa1087400:CDS | 50.0% | |
| GTAATGCCATGGCATTGCCA+TGG | + | chr7_3:135523-135542 | Msa1087400:CDS | 50.0% | |
| GCGGTATCTGTGATCCATTC+AGG | + | chr7_3:135843-135862 | Msa1087400:intron | 50.0% | |
| GTGAAGCGTGTCTACTATCC+AGG | + | chr7_3:136106-136125 | Msa1087400:CDS | 50.0% | |
| CTCATGGCAAGCTCATGTTC+AGG | - | chr7_3:136145-136164 | None:intergenic | 50.0% | |
| CTGAACATGAGCTTGCCATG+AGG | + | chr7_3:136143-136162 | Msa1087400:CDS | 50.0% | |
| !!! | GAGGCAGATGACTGGTTTTG+GGG | + | chr7_3:136162-136181 | Msa1087400:CDS | 50.0% |
| !!! | AGGCAGATGACTGGTTTTGG+GGG | + | chr7_3:136163-136182 | Msa1087400:CDS | 50.0% |
| !!! | GGTGTGGTCAGTTTTGAGGT+GGG | + | chr7_3:136184-136203 | Msa1087400:intron | 50.0% |
| GGGAATTGGGTTCCCTTGTT+TGG | + | chr7_3:136771-136790 | Msa1087400:intron | 50.0% | |
| GGACCTTCCTGCATCAGAAA+GGG | + | chr7_3:137218-137237 | Msa1087400:CDS | 50.0% | |
| ! | TGAACCCAGTATTTGCTGCG+CGG | + | chr7_3:137409-137428 | Msa1087400:three_prime_UTR | 50.0% |
| GTGGTTGTCGGTGGATGGAA+GGG | - | chr7_3:132347-132366 | None:intergenic | 55.0% | |
| TGGGAGGAAAACGGAGGATG+GGG | - | chr7_3:132431-132450 | None:intergenic | 55.0% | |
| CACAAATCGTCGCTGCTTCG+TGG | + | chr7_3:132508-132527 | Msa1087400:CDS | 55.0% | |
| ! | ACATCGGCGTCGAGGTCTAA+CGG | - | chr7_3:132630-132649 | None:intergenic | 55.0% |
| TAAGCCACGAAGCACGGACA+CGG | + | chr7_3:133524-133543 | Msa1087400:intron | 55.0% | |
| TATACCGTGTCCGTGCTTCG+TGG | - | chr7_3:133531-133550 | None:intergenic | 55.0% | |
| ! | CATAGTCTTGCTGATGGCGC+TGG | + | chr7_3:134175-134194 | Msa1087400:CDS | 55.0% |
| TGCAAGGCTCCAACATCAGC+AGG | - | chr7_3:134733-134752 | None:intergenic | 55.0% | |
| CGAGCAAAGCCCCATTCTTG+TGG | - | chr7_3:134941-134960 | None:intergenic | 55.0% | |
| GGGGCTTTGCTCGTCATTGA+TGG | + | chr7_3:134948-134967 | Msa1087400:CDS | 55.0% | |
| !! | GCAAGGGCCTTCTGGTTCAA+AGG | - | chr7_3:134987-135006 | None:intergenic | 55.0% |
| CCAAATCAGCACCAAGGGCA+AGG | - | chr7_3:135004-135023 | None:intergenic | 55.0% | |
| !! | CCTTGCCCTTGGTGCTGATT+TGG | + | chr7_3:135001-135020 | Msa1087400:CDS | 55.0% |
| TTTGGGCGGTGCTCTTAACC+CGG | + | chr7_3:135219-135238 | Msa1087400:CDS | 55.0% | |
| GTAAGGCCATGGCAATGCCA+TGG | - | chr7_3:135532-135551 | None:intergenic | 55.0% | |
| ! | TCAGGATGACTTGGCAAGCC+TGG | - | chr7_3:136127-136146 | None:intergenic | 55.0% |
| CTTGCCATGAGGCAGATGAC+TGG | + | chr7_3:136154-136173 | Msa1087400:CDS | 55.0% | |
| !!! | GATGACTGGTTTTGGGGGTG+TGG | + | chr7_3:136168-136187 | Msa1087400:CDS | 55.0% |
| !! | TGGGGGTGTGGTCAGTTTTG+AGG | + | chr7_3:136180-136199 | Msa1087400:CDS | 55.0% |
| !!! | GGGTGTGGTCAGTTTTGAGG+TGG | + | chr7_3:136183-136202 | Msa1087400:intron | 55.0% |
| GCTCTCACAGCCACCAAATG+AGG | - | chr7_3:136366-136385 | None:intergenic | 55.0% | |
| !! | TGGTGGCTGTGAGAGCATTG+TGG | + | chr7_3:136370-136389 | Msa1087400:CDS | 55.0% |
| GGGACCTTCCTGCATCAGAA+AGG | + | chr7_3:137217-137236 | Msa1087400:intron | 55.0% | |
| TGGCCCTTTCTGATGCAGGA+AGG | - | chr7_3:137224-137243 | None:intergenic | 55.0% | |
| CACTTGGCCCTTTCTGATGC+AGG | - | chr7_3:137228-137247 | None:intergenic | 55.0% | |
| CTGCATCAGAAAGGGCCAAG+TGG | + | chr7_3:137226-137245 | Msa1087400:CDS | 55.0% | |
| !! | GCAGGCACTGGAAGCCATAT+AGG | + | chr7_3:137320-137339 | Msa1087400:CDS | 55.0% |
| GGGATCGGAACGGCATTCGA+AGG | - | chr7_3:132314-132333 | None:intergenic | 60.0% | |
| GTTGTCGGTGGATGGAAGGG+AGG | - | chr7_3:132344-132363 | None:intergenic | 60.0% | |
| GGTGGTTGTCGGTGGATGGA+AGG | - | chr7_3:132348-132367 | None:intergenic | 60.0% | |
| !! | TGGTGGTGGTTGTCGGTGGA+TGG | - | chr7_3:132352-132371 | None:intergenic | 60.0% |
| !! | GTTGTGGTGGTGGTTGTCGG+TGG | - | chr7_3:132356-132375 | None:intergenic | 60.0% |
| !! | GCGGTTGTGGTGGTGGTTGT+CGG | - | chr7_3:132359-132378 | None:intergenic | 60.0% |
| AATGACGACGGCGGTTGTGG+TGG | - | chr7_3:132369-132388 | None:intergenic | 60.0% | |
| GGAAATGACGACGGCGGTTG+TGG | - | chr7_3:132372-132391 | None:intergenic | 60.0% | |
| CGGAGGAGAGGGAGGTTGTT+GGG | - | chr7_3:132393-132412 | None:intergenic | 60.0% | |
| AACGGAGGATGGGGAGGAGA+TGG | - | chr7_3:132422-132441 | None:intergenic | 60.0% | |
| GAGGAAAACGGAGGATGGGG+AGG | - | chr7_3:132428-132447 | None:intergenic | 60.0% | |
| GCTGCAGTTACGACGCGCTT+TGG | - | chr7_3:132475-132494 | None:intergenic | 60.0% | |
| GAAGGAACTGGGAACCCCAG+CGG | + | chr7_3:132537-132556 | Msa1087400:CDS | 60.0% | |
| GACATCGCCATCGGCGACAT+CGG | - | chr7_3:132646-132665 | None:intergenic | 60.0% | |
| GTCACAAGATGTCCACCGGC+TGG | - | chr7_3:134203-134222 | None:intergenic | 60.0% | |
| AACCAGAAGGCCCTTGCCCT+TGG | + | chr7_3:134990-135009 | Msa1087400:CDS | 60.0% | |
| GGCTGATGTCTTGCAGGCAC+TGG | + | chr7_3:137308-137327 | Msa1087400:CDS | 60.0% | |
| GCGGAGGAGAGGGAGGTTGT+TGG | - | chr7_3:132394-132413 | None:intergenic | 65.0% | |
| GGAGGATGGGGAGGAGATGG+CGG | - | chr7_3:132419-132438 | None:intergenic | 65.0% | |
| TGTCGCTGGGGTTCCGACTC+CGG | + | chr7_3:132560-132579 | Msa1087400:CDS | 65.0% | |
| GCAGATGCAACAGCCGGCAC+CGG | - | chr7_3:132582-132601 | None:intergenic | 65.0% | |
| GCGTCGAGGTCTAACGGCAC+CGG | - | chr7_3:132624-132643 | None:intergenic | 65.0% | |
| !! | CTGATGGCGCTGGTTCCAGC+CGG | + | chr7_3:134185-134204 | Msa1087400:CDS | 65.0% |
| CACCAAGGGCAAGGGCCTTC+TGG | - | chr7_3:134995-135014 | None:intergenic | 65.0% | |
| GACGACGGCGGTTGTGGTGG+TGG | - | chr7_3:132366-132385 | None:intergenic | 70.0% | |
| ! | GGATGGGGAGGAGATGGCGG+CGG | - | chr7_3:132416-132435 | None:intergenic | 70.0% |
| !! | GGAACCCCAGCGGTGTCGCT+GGG | + | chr7_3:132547-132566 | Msa1087400:CDS | 70.0% |
| !! | GAACCCCAGCGGTGTCGCTG+GGG | + | chr7_3:132548-132567 | Msa1087400:CDS | 70.0% |
| GAACCCCAGCGACACCGCTG+GGG | - | chr7_3:132554-132573 | None:intergenic | 70.0% | |
| GGAACCCCAGCGACACCGCT+GGG | - | chr7_3:132555-132574 | None:intergenic | 70.0% | |
| TGGGGTTCCGACTCCGGTGC+CGG | + | chr7_3:132566-132585 | Msa1087400:CDS | 70.0% | |
| ! | GCAACAGCCGGCACCGGAGT+CGG | - | chr7_3:132576-132595 | None:intergenic | 70.0% |
| CATCGGCGACATCGGCGTCG+AGG | - | chr7_3:132638-132657 | None:intergenic | 70.0% | |
| CTCGACGCCGATGTCGCCGA+TGG | + | chr7_3:132636-132655 | Msa1087400:CDS | 70.0% | |
| !! | ATGGCGCTGGTTCCAGCCGG+TGG | + | chr7_3:134188-134207 | Msa1087400:CDS | 70.0% |
| ! | GATGGCGGCGGCGGAGGAGA+GGG | - | chr7_3:132404-132423 | None:intergenic | 75.0% |
| ! | AGATGGCGGCGGCGGAGGAG+AGG | - | chr7_3:132405-132424 | None:intergenic | 75.0% |
| ! | TGGGGAGGAGATGGCGGCGG+CGG | - | chr7_3:132413-132432 | None:intergenic | 75.0% |
| !! | GGGAACCCCAGCGGTGTCGC+TGG | + | chr7_3:132546-132565 | Msa1087400:CDS | 75.0% |
| CGGAACCCCAGCGACACCGC+TGG | - | chr7_3:132556-132575 | None:intergenic | 75.0% | |
| !! | GGAGGAGATGGCGGCGGCGG+AGG | - | chr7_3:132410-132429 | None:intergenic | 80.0% |
| ! | GGCGGCGGCGGAGGAGAGGG+AGG | - | chr7_3:132401-132420 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 132187 | 137731 | 132187 | ID=Msa1087400;Name=Msa1087400 |
| chr7_3 | mRNA | 132187 | 137731 | 132187 | ID=Msa1087400-mRNA-1;Parent=Msa1087400;Name=Msa1087400-mRNA-1;_AED=0.09;_eAED=0.10;_QI=131|0.8|0.90|1|1|1|11|390|540 |
| chr7_3 | exon | 132187 | 132747 | 132187 | ID=Msa1087400-mRNA-1:exon:53;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 133363 | 133466 | 133363 | ID=Msa1087400-mRNA-1:exon:54;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 133945 | 134018 | 133945 | ID=Msa1087400-mRNA-1:exon:55;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 134121 | 134289 | 134121 | ID=Msa1087400-mRNA-1:exon:56;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 134715 | 134774 | 134715 | ID=Msa1087400-mRNA-1:exon:57;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 134861 | 135064 | 134861 | ID=Msa1087400-mRNA-1:exon:58;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 135154 | 135240 | 135154 | ID=Msa1087400-mRNA-1:exon:59;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 135412 | 135567 | 135412 | ID=Msa1087400-mRNA-1:exon:60;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 136106 | 136201 | 136106 | ID=Msa1087400-mRNA-1:exon:61;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 136299 | 136417 | 136299 | ID=Msa1087400-mRNA-1:exon:62;Parent=Msa1087400-mRNA-1 |
| chr7_3 | exon | 137218 | 137731 | 137218 | ID=Msa1087400-mRNA-1:exon:63;Parent=Msa1087400-mRNA-1 |
| chr7_3 | five_prime_UTR | 132187 | 132317 | 132187 | ID=Msa1087400-mRNA-1:five_prime_utr;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 132318 | 132747 | 132318 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 133363 | 133466 | 133363 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 133945 | 134018 | 133945 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 134121 | 134289 | 134121 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 134715 | 134774 | 134715 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 134861 | 135064 | 134861 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 135154 | 135240 | 135154 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 135412 | 135567 | 135412 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 136106 | 136201 | 136106 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 136299 | 136417 | 136299 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | CDS | 137218 | 137341 | 137218 | ID=Msa1087400-mRNA-1:cds;Parent=Msa1087400-mRNA-1 |
| chr7_3 | three_prime_UTR | 137342 | 137731 | 137342 | ID=Msa1087400-mRNA-1:three_prime_utr;Parent=Msa1087400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
