Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089850 | XP_024638437.2 | 98.174 | 438 | 8 | 0 | 1 | 438 | 1 | 438 | 0.0 | 892 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089850 | sp|Q9LDU6|ST7R_ARATH | 83.063 | 431 | 73 | 0 | 8 | 438 | 2 | 432 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089850 | A0A396IDF0 | 96.811 | 439 | 12 | 2 | 1 | 438 | 1 | 438 | 0.0 | 872 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625100 | Msa1089850 | 0.889223 | 2.935143e-73 | -8.615850e-47 |
| Msa0670280 | Msa1089850 | 0.896787 | 2.637079e-76 | -8.615850e-47 |
| Msa1089850 | Msa1264300 | -0.802363 | 5.811900e-49 | -8.615850e-47 |
| Msa1089850 | Msa1269290 | 0.983544 | 4.942534e-158 | -8.615850e-47 |
| Msa1089850 | Msa1334350 | -0.807060 | 6.078189e-50 | -8.615850e-47 |
| Msa1089850 | Msa1402340 | -0.804642 | 1.958709e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089850 | MtrunA17_Chr4g0051521 | 96.811 | 439 | 12 | 2 | 1 | 438 | 1 | 438 | 0.0 | 872 |
| Msa1089850 | MtrunA17_Chr4g0000371 | 99.357 | 311 | 2 | 0 | 128 | 438 | 5 | 315 | 0.0 | 647 |
| Msa1089850 | MtrunA17_Chr4g0051511 | 79.944 | 354 | 9 | 3 | 129 | 435 | 6 | 344 | 0.0 | 556 |
| Msa1089850 | MtrunA17_Chr4g0000381 | 94.495 | 109 | 6 | 0 | 1 | 109 | 1 | 109 | 6.56e-68 | 212 |
| Msa1089850 | MtrunA17_Chr1g0179361 | 29.815 | 379 | 236 | 9 | 70 | 438 | 11 | 369 | 1.42e-42 | 154 |
| Msa1089850 | MtrunA17_Chr4g0051501 | 85.135 | 74 | 9 | 2 | 1 | 73 | 1 | 73 | 3.96e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089850 | AT1G50430.1 | 83.063 | 431 | 73 | 0 | 8 | 438 | 2 | 432 | 0.0 | 756 |
| Msa1089850 | AT1G50430.2 | 83.063 | 431 | 72 | 1 | 8 | 438 | 2 | 431 | 0.0 | 753 |
| Msa1089850 | AT3G52940.1 | 29.921 | 381 | 234 | 9 | 68 | 438 | 12 | 369 | 9.04e-49 | 171 |
| Msa1089850 | AT3G52940.2 | 28.444 | 225 | 141 | 7 | 68 | 282 | 12 | 226 | 3.47e-20 | 90.1 |
Find 108 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGGGAGATTTCTATTTA+TGG | 0.117380 | 7_3:+3445459 | None:intergenic |
| CTATGCATCTTTACCTTTGA+TGG | 0.168728 | 7_3:+3447056 | None:intergenic |
| TCTTAATAGTATGAAGAAAA+TGG | 0.187237 | 7_3:-3447780 | Msa1089850:intron |
| GCACCATCTTCTACTGATTC+TGG | 0.211719 | 7_3:-3448940 | Msa1089850:CDS |
| TAACATTCGCTTACAAAATA+AGG | 0.224015 | 7_3:+3445542 | None:intergenic |
| AAATATTAGCTGCATTCTTC+TGG | 0.228561 | 7_3:-3446471 | Msa1089850:CDS |
| GCGAATGTTATGATTTAAAA+TGG | 0.252269 | 7_3:-3445529 | Msa1089850:three_prime_UTR |
| CAGCATAAACAGCTATAATT+TGG | 0.256261 | 7_3:+3450902 | None:intergenic |
| AACAATCGTTTATGATCATT+TGG | 0.260995 | 7_3:-3449126 | Msa1089850:CDS |
| TCACTTCAGCTTCTTCTTCC+TGG | 0.263974 | 7_3:-3450868 | Msa1089850:CDS |
| AAGAATGCAGCTAATATTTC+GGG | 0.270796 | 7_3:+3446475 | None:intergenic |
| TTGCTGGGGCTGTTTGGTTT+GGG | 0.285386 | 7_3:-3447395 | Msa1089850:CDS |
| TTTGCTGGGGCTGTTTGGTT+TGG | 0.288712 | 7_3:-3447396 | Msa1089850:CDS |
| TTTGATTATTTAAACAATAA+TGG | 0.292208 | 7_3:-3450973 | Msa1089850:CDS |
| CGGTTACCGGTGGGAGAAAT+AGG | 0.296586 | 7_3:+3450829 | None:intergenic |
| GAAGAATGCAGCTAATATTT+CGG | 0.298216 | 7_3:+3446474 | None:intergenic |
| TTATATTTGCTGGGGCTGTT+TGG | 0.304151 | 7_3:-3447401 | Msa1089850:CDS |
| TCTGGTGGGAAGCTGGATAC+TGG | 0.304373 | 7_3:-3447695 | Msa1089850:CDS |
| ACAATCGTTTATGATCATTT+GGG | 0.320331 | 7_3:-3449125 | Msa1089850:CDS |
| AATGATGTCGTGGGCTGTTC+TGG | 0.326706 | 7_3:-3448272 | Msa1089850:CDS |
| CGGTAACCGCCCTGTCTATA+AGG | 0.352628 | 7_3:-3450815 | Msa1089850:intron |
| GCCTCATATACCACTGCTTC+CGG | 0.355351 | 7_3:-3446902 | Msa1089850:CDS |
| TGTGGGAGATTTCTATTTAT+GGG | 0.362125 | 7_3:+3445460 | None:intergenic |
| ACTAGTAAGAAGATCGAAAA+TGG | 0.366082 | 7_3:-3451244 | Msa1089850:exon |
| CCTCATATACCACTGCTTCC+GGG | 0.368880 | 7_3:-3446901 | Msa1089850:CDS |
| TTTGTATTTCTTCAGGCAAA+TGG | 0.379608 | 7_3:-3450273 | Msa1089850:intron |
| TATATTCCACACTCAACTTT+GGG | 0.397950 | 7_3:-3449097 | Msa1089850:CDS |
| TGCTGCATATTTAGTTACTT+TGG | 0.407451 | 7_3:-3450247 | Msa1089850:CDS |
| CTTAATAGTATGAAGAAAAT+GGG | 0.409251 | 7_3:-3447779 | Msa1089850:intron |
| AATGATCATAAACGATTGTT+GGG | 0.411459 | 7_3:+3449129 | None:intergenic |
| AAATGATCATAAACGATTGT+TGG | 0.417130 | 7_3:+3449128 | None:intergenic |
| ATATATTCCACACTCAACTT+TGG | 0.422367 | 7_3:-3449098 | Msa1089850:CDS |
| TTATATTTGATAGGGTCATT+TGG | 0.422502 | 7_3:-3448962 | Msa1089850:intron |
| AGTCATCATCAATATATTCC+TGG | 0.424853 | 7_3:+3445682 | None:intergenic |
| AGAAATATCACGTAGAAGTA+AGG | 0.430755 | 7_3:+3446338 | None:intergenic |
| AAAGCTGGAAGTGTTGGTTT+AGG | 0.432868 | 7_3:+3450925 | None:intergenic |
| GTCAACCATCCAGTGAATCT+TGG | 0.433126 | 7_3:-3447337 | Msa1089850:CDS |
| CTTATAGACAGGGCGGTTAC+CGG | 0.440174 | 7_3:+3450816 | None:intergenic |
| CAAGAGTTTCGTAGGACAAA+TGG | 0.441736 | 7_3:-3447104 | Msa1089850:CDS |
| ACAGCTATAATTTGGAAAGC+TGG | 0.448940 | 7_3:+3450910 | None:intergenic |
| TTACTTACATTGCACTTTGG+CGG | 0.449956 | 7_3:-3450224 | Msa1089850:intron |
| CTTACGTGATTGAATAGAGC+TGG | 0.458940 | 7_3:+3446442 | None:intergenic |
| TATATTGATGATGACTTGTC+TGG | 0.471587 | 7_3:-3445675 | Msa1089850:exon |
| GTACCTTACAGAATCATTCC+AGG | 0.476122 | 7_3:-3445700 | Msa1089850:CDS |
| GTTTACCATTGCATCTTAAG+TGG | 0.477376 | 7_3:+3445599 | None:intergenic |
| CCATCAGTGTATACATCTCC+TGG | 0.477762 | 7_3:-3447370 | Msa1089850:CDS |
| CCCGGAAGCAGTGGTATATG+AGG | 0.482468 | 7_3:+3446901 | None:intergenic |
| ACCTGGGTGCCAAGATTCAC+TGG | 0.487320 | 7_3:+3447328 | None:intergenic |
| TGGTTGACAAGGTACATTCC+AGG | 0.489773 | 7_3:+3447352 | None:intergenic |
| CTTGACAGAATTCTCCTCCA+TGG | 0.491036 | 7_3:-3445432 | Msa1089850:three_prime_UTR |
| TTAAACAATAATGGTTTACA+AGG | 0.495899 | 7_3:-3450964 | Msa1089850:CDS |
| CATGGCAGCAAGTGAAGGAT+AGG | 0.502904 | 7_3:+3445649 | None:intergenic |
| ATTTGGAAAGCTGGAAGTGT+TGG | 0.506632 | 7_3:+3450919 | None:intergenic |
| GACACACAGACCTTATAGAC+AGG | 0.514299 | 7_3:+3450805 | None:intergenic |
| CTTCCTGGTCAAACTGTCTA+CGG | 0.517571 | 7_3:-3450853 | Msa1089850:CDS |
| ATTCCTGGAATGATTCTGTA+AGG | 0.518813 | 7_3:+3445697 | None:intergenic |
| ATGGTTTACGATGACGGCTA+TGG | 0.519049 | 7_3:-3451016 | Msa1089850:CDS |
| CATGCAGGTATGGAAAGTAC+TGG | 0.526601 | 7_3:-3445741 | Msa1089850:intron |
| CCAGGAGATGTATACACTGA+TGG | 0.529275 | 7_3:+3447370 | None:intergenic |
| ACTATGATTGTGACAGGCAA+AGG | 0.530436 | 7_3:-3447127 | Msa1089850:CDS |
| ATGAAGATGGTTTACGATGA+CGG | 0.530950 | 7_3:-3451022 | Msa1089850:intron |
| ACTGGAAACTCTATTGCGAC+AGG | 0.531995 | 7_3:-3445723 | Msa1089850:CDS |
| TGTAAATACTACGTTAATGC+TGG | 0.542689 | 7_3:-3447736 | Msa1089850:CDS |
| TCTACTGATTCTGGTTCAAG+TGG | 0.545372 | 7_3:-3448931 | Msa1089850:CDS |
| ATGGAGCTCTATCCACGCAT+TGG | 0.545997 | 7_3:-3448337 | Msa1089850:CDS |
| GAGTGGTGAATGTACTGTTT+CGG | 0.546974 | 7_3:+3451203 | None:intergenic |
| ACATCAACTATGATTGTGAC+AGG | 0.553357 | 7_3:-3447133 | Msa1089850:CDS |
| TTACGTGATTGAATAGAGCT+GGG | 0.555286 | 7_3:+3446443 | None:intergenic |
| CTCATATACCACTGCTTCCG+GGG | 0.558627 | 7_3:-3446900 | Msa1089850:CDS |
| TACGGTCCTATTTCTCCCAC+CGG | 0.572594 | 7_3:-3450835 | Msa1089850:CDS |
| CAATCGTTTATGATCATTTG+GGG | 0.573140 | 7_3:-3449124 | Msa1089850:CDS |
| TTCTGCCACTTAAGATGCAA+TGG | 0.573566 | 7_3:-3445604 | Msa1089850:three_prime_UTR |
| GTAAACATGGCAGCAAGTGA+AGG | 0.580459 | 7_3:+3445644 | None:intergenic |
| AGTCCTCGTATATATGAGCT+AGG | 0.581749 | 7_3:-3445409 | Msa1089850:three_prime_UTR |
| AACATTGTGTGTGTCTATCA+CGG | 0.584100 | 7_3:-3451342 | Msa1089850:five_prime_UTR |
| TGGTTACTTACATTGCACTT+TGG | 0.584119 | 7_3:-3450227 | Msa1089850:CDS |
| TCCAGTGAATCTTGGCACCC+AGG | 0.587162 | 7_3:-3447329 | Msa1089850:intron |
| GAACCAGAATCAGTAGAAGA+TGG | 0.593438 | 7_3:+3448937 | None:intergenic |
| ACCATCCAGAGGTTAAAAGA+AGG | 0.595226 | 7_3:+3446864 | None:intergenic |
| TACAGTAGATTGACGAAAGG+AGG | 0.597491 | 7_3:+3451141 | None:intergenic |
| TTTACGATGACGGCTATGGA+TGG | 0.598888 | 7_3:-3451012 | Msa1089850:CDS |
| CTCAACCTGCTTTATGCAGT+AGG | 0.603786 | 7_3:+3448243 | None:intergenic |
| ATGGATATTGCACACGATCG+AGG | 0.603895 | 7_3:-3447666 | Msa1089850:intron |
| TCATATATACGAGGACTCCA+TGG | 0.612699 | 7_3:+3445415 | None:intergenic |
| CTGGGGAAAAGCTCCATCAA+AGG | 0.613205 | 7_3:-3447069 | Msa1089850:intron |
| AAGGGATATGTACCATCCAG+AGG | 0.618149 | 7_3:+3446853 | None:intergenic |
| ACTTACCTACTGCATAAAGC+AGG | 0.622001 | 7_3:-3448248 | Msa1089850:intron |
| ACTTACAGTAGATTGACGAA+AGG | 0.623164 | 7_3:+3451138 | None:intergenic |
| CTACTGATTCTGGTTCAAGT+GGG | 0.624307 | 7_3:-3448930 | Msa1089850:CDS |
| AAAGCTCCCAAAGTTGAGTG+TGG | 0.627248 | 7_3:+3449091 | None:intergenic |
| GGCAAAGGCAAGAGTTTCGT+AGG | 0.627927 | 7_3:-3447112 | Msa1089850:CDS |
| AGTAAGAAGATCGAAAATGG+TGG | 0.641670 | 7_3:-3451241 | Msa1089850:exon |
| GCAGATTTGGAATGATGTCG+TGG | 0.642011 | 7_3:-3448282 | Msa1089850:CDS |
| GGGTGCCAAGATTCACTGGA+TGG | 0.644744 | 7_3:+3447332 | None:intergenic |
| GATTCACTGGATGGTTGACA+AGG | 0.654390 | 7_3:+3447341 | None:intergenic |
| ATAGACAGGGCGGTTACCGG+TGG | 0.655081 | 7_3:+3450819 | None:intergenic |
| CTGGAAACTCTATTGCGACA+GGG | 0.658826 | 7_3:-3445722 | Msa1089850:CDS |
| AATCGTTTATGATCATTTGG+GGG | 0.662804 | 7_3:-3449123 | Msa1089850:CDS |
| CAGATTTGGAATGATGTCGT+GGG | 0.664496 | 7_3:-3448281 | Msa1089850:CDS |
| ATAGAAGCATATGTGACGAG+TGG | 0.675409 | 7_3:+3451186 | None:intergenic |
| TAGACAGGGCGGTTACCGGT+GGG | 0.677503 | 7_3:+3450820 | None:intergenic |
| GGACCGTAGACAGTTTGACC+AGG | 0.681218 | 7_3:+3450850 | None:intergenic |
| ACACACAGACCTTATAGACA+GGG | 0.685969 | 7_3:+3450806 | None:intergenic |
| AGCTGGATACTGGAACACGA+TGG | 0.692506 | 7_3:-3447685 | Msa1089850:CDS |
| ATTCCTAGCTCATATATACG+AGG | 0.721276 | 7_3:+3445406 | None:intergenic |
| AGAATGCAGCTAATATTTCG+GGG | 0.723462 | 7_3:+3446476 | None:intergenic |
| TATATACGAGGACTCCATGG+AGG | 0.724414 | 7_3:+3445418 | None:intergenic |
| CACAGACCTTATAGACAGGG+CGG | 0.753720 | 7_3:+3450809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTATTTAAACAATAA+TGG | - | chr7_3:3445799-3445818 | Msa1089850:intron | 10.0% |
| !! | AAATGAAAAATCAATTTAAT+CGG | + | chr7_3:3446802-3446821 | None:intergenic | 10.0% |
| !!! | TTATTTTCTGAAATAATTAC+AGG | + | chr7_3:3446679-3446698 | None:intergenic | 15.0% |
| !! | AAAAAAAATTCAAAAGTAGA+TGG | + | chr7_3:3448750-3448769 | None:intergenic | 15.0% |
| !! | ATATGAATCATATTTATATG+TGG | - | chr7_3:3448804-3448823 | Msa1089850:intron | 15.0% |
| !! | TGAAAAGAATATTAGAAATA+AGG | + | chr7_3:3449529-3449548 | None:intergenic | 15.0% |
| !!! | CAAAAATAGAATGTTTTTAA+GGG | + | chr7_3:3449940-3449959 | None:intergenic | 15.0% |
| !!! | TCAAAAATAGAATGTTTTTA+AGG | + | chr7_3:3449941-3449960 | None:intergenic | 15.0% |
| !!! | TTAGCAATAATATTTCTATA+TGG | + | chr7_3:3450093-3450112 | None:intergenic | 15.0% |
| !!! | ATATATTTGATTTTTCTACT+TGG | - | chr7_3:3450172-3450191 | Msa1089850:intron | 15.0% |
| !! | AAAGTGTATATATTACATTT+AGG | + | chr7_3:3450798-3450817 | None:intergenic | 15.0% |
| !!! | CACAATGTTTGTTTATTTTT+GGG | + | chr7_3:3445419-3445438 | None:intergenic | 20.0% |
| !!! | ACACAATGTTTGTTTATTTT+TGG | + | chr7_3:3445420-3445439 | None:intergenic | 20.0% |
| !! | TTAAACAATAATGGTTTACA+AGG | - | chr7_3:3445808-3445827 | Msa1089850:intron | 20.0% |
| !!! | GACAAAAACCAATTTTTTTT+TGG | - | chr7_3:3446152-3446171 | Msa1089850:intron | 20.0% |
| !!! | ATTGATTTTTCATTTCATCT+TGG | - | chr7_3:3446807-3446826 | Msa1089850:intron | 20.0% |
| !!! | TATCCTTTTAAATTTCACTT+TGG | - | chr7_3:3447070-3447089 | Msa1089850:CDS | 20.0% |
| !! | TCAAACAATTTCTTCTAATA+TGG | + | chr7_3:3448292-3448311 | None:intergenic | 20.0% |
| !!! | CGTTTTTTTATATGAATAAC+AGG | - | chr7_3:3448336-3448355 | Msa1089850:CDS | 20.0% |
| !! | AACTACAAATAGGTATTTAA+AGG | + | chr7_3:3448645-3448664 | None:intergenic | 20.0% |
| !! | TCTTAATAGTATGAAGAAAA+TGG | - | chr7_3:3448992-3449011 | Msa1089850:intron | 20.0% |
| !! | CTTAATAGTATGAAGAAAAT+GGG | - | chr7_3:3448993-3449012 | Msa1089850:intron | 20.0% |
| !! | GAAATATTATTGCTAACTAT+AGG | - | chr7_3:3450097-3450116 | Msa1089850:intron | 20.0% |
| !! | TAAACAAAAATAGGTAAACA+TGG | + | chr7_3:3451144-3451163 | None:intergenic | 20.0% |
| ! | TGAATTGAATTGAATGAAGA+TGG | - | chr7_3:3445737-3445756 | Msa1089850:CDS | 25.0% |
| !!! | TACAAGGTTTTGTTAATCTA+TGG | - | chr7_3:3445824-3445843 | Msa1089850:intron | 25.0% |
| ! | TGAAAATAAAAGTTGTGTTG+TGG | + | chr7_3:3446190-3446209 | None:intergenic | 25.0% |
| !! | TTTTTGTCTTATACGATGTT+TGG | + | chr7_3:3446254-3446273 | None:intergenic | 25.0% |
| ! | ACTATGTGTTACGATTTAAT+TGG | - | chr7_3:3446373-3446392 | Msa1089850:intron | 25.0% |
| ! | AGAAAAGTAACAAAGAAGAT+AGG | - | chr7_3:3446607-3446626 | Msa1089850:intron | 25.0% |
| ! | AAAGAAAAGAAAATTGGCAT+AGG | - | chr7_3:3446910-3446929 | Msa1089850:CDS | 25.0% |
| ! | ATAAGACTTTGTATGATCTT+AGG | - | chr7_3:3446967-3446986 | Msa1089850:intron | 25.0% |
| ! | CATCCAAAGTGAAATTTAAA+AGG | + | chr7_3:3447076-3447095 | None:intergenic | 25.0% |
| ! | TGTTCTGTGTTTATGAAAAT+TGG | - | chr7_3:3447094-3447113 | Msa1089850:CDS | 25.0% |
| ! | CTTCATAGATAATGTATGAT+GGG | - | chr7_3:3447345-3447364 | Msa1089850:CDS | 25.0% |
| ! | ATAAAGCCTTGAAATTCAAA+AGG | + | chr7_3:3447435-3447454 | None:intergenic | 25.0% |
| ! | CTTTATGAAGATAGGTTTAT+AGG | - | chr7_3:3447449-3447468 | Msa1089850:intron | 25.0% |
| !! | AATTTTTGCATGTATGTTTC+AGG | - | chr7_3:3447606-3447625 | Msa1089850:intron | 25.0% |
| ! | AATGATCATAAACGATTGTT+GGG | + | chr7_3:3447646-3447665 | None:intergenic | 25.0% |
| ! | AAATGATCATAAACGATTGT+TGG | + | chr7_3:3447647-3447666 | None:intergenic | 25.0% |
| ! | AACAATCGTTTATGATCATT+TGG | - | chr7_3:3447646-3447665 | Msa1089850:intron | 25.0% |
| ! | ACAATCGTTTATGATCATTT+GGG | - | chr7_3:3447647-3447666 | Msa1089850:intron | 25.0% |
| ! | AAATTCAATGTAAATTGCAC+AGG | + | chr7_3:3447777-3447796 | None:intergenic | 25.0% |
| ! | ACTCAAGTGTTATATTTGAT+AGG | - | chr7_3:3447801-3447820 | Msa1089850:intron | 25.0% |
| ! | CTCAAGTGTTATATTTGATA+GGG | - | chr7_3:3447802-3447821 | Msa1089850:intron | 25.0% |
| ! | TTATATTTGATAGGGTCATT+TGG | - | chr7_3:3447810-3447829 | Msa1089850:intron | 25.0% |
| !!! | ACATAATCATCGATTTTTAC+TGG | - | chr7_3:3447866-3447885 | Msa1089850:intron | 25.0% |
| !!! | CATAATCATCGATTTTTACT+GGG | - | chr7_3:3447867-3447886 | Msa1089850:intron | 25.0% |
| ! | TCTTATCCATTTATTTGCAT+TGG | - | chr7_3:3447941-3447960 | Msa1089850:intron | 25.0% |
| ! | CAATTTCCAATGCAAATAAA+TGG | + | chr7_3:3447950-3447969 | None:intergenic | 25.0% |
| !! | AGAAATGTTTCAACGTTTTA+TGG | - | chr7_3:3448248-3448267 | Msa1089850:intron | 25.0% |
| ! | CATATAAAAAAACGTCTCAA+GGG | + | chr7_3:3448330-3448349 | None:intergenic | 25.0% |
| ! | TCATATAAAAAAACGTCTCA+AGG | + | chr7_3:3448331-3448350 | None:intergenic | 25.0% |
| ! | GTTGAGATCTAATTTATGAT+AGG | - | chr7_3:3448780-3448799 | Msa1089850:intron | 25.0% |
| ! | ATCTTACTAGTATATGAATC+AGG | - | chr7_3:3448894-3448913 | Msa1089850:intron | 25.0% |
| ! | ACAATAGAGAATTAACCAAA+GGG | + | chr7_3:3448961-3448980 | None:intergenic | 25.0% |
| ! | AACAATAGAGAATTAACCAA+AGG | + | chr7_3:3448962-3448981 | None:intergenic | 25.0% |
| ! | TAAATGAAATCCAGTTGTTA+TGG | + | chr7_3:3449255-3449274 | None:intergenic | 25.0% |
| ! | TGGATTTCATTTATCATGTT+TGG | - | chr7_3:3449262-3449281 | Msa1089850:intron | 25.0% |
| ! | TAGAAATAAGGAAAACTTTG+CGG | + | chr7_3:3449517-3449536 | None:intergenic | 25.0% |
| !! | TTTCCCCTTTTTATGAAAAT+TGG | - | chr7_3:3449560-3449579 | Msa1089850:intron | 25.0% |
| !! | AAGCCAATTTTCATAAAAAG+GGG | + | chr7_3:3449566-3449585 | None:intergenic | 25.0% |
| !! | GAAGCCAATTTTCATAAAAA+GGG | + | chr7_3:3449567-3449586 | None:intergenic | 25.0% |
| !! | AGAAGCCAATTTTCATAAAA+AGG | + | chr7_3:3449568-3449587 | None:intergenic | 25.0% |
| ! | TAAAGATGCATAGAATATAC+TGG | - | chr7_3:3449726-3449745 | Msa1089850:intron | 25.0% |
| ! | TATATAATGCAAGTCAGATT+GGG | - | chr7_3:3449786-3449805 | Msa1089850:intron | 25.0% |
| ! | ACTAAGTTGTTGTAATGATT+GGG | - | chr7_3:3449984-3450003 | Msa1089850:intron | 25.0% |
| !! | GCAATAATATTTCTATATGG+AGG | + | chr7_3:3450090-3450109 | None:intergenic | 25.0% |
| !! | ATGTTCTCTAAGAAAATGTT+AGG | + | chr7_3:3450198-3450217 | None:intergenic | 25.0% |
| ! | GATAGAAAATAATGCTTACT+TGG | + | chr7_3:3450510-3450529 | None:intergenic | 25.0% |
| ! | TTAAAGCTTCAACAAAATCA+TGG | + | chr7_3:3450694-3450713 | None:intergenic | 25.0% |
| ! | ATATATTACATTTAGGCTGT+TGG | + | chr7_3:3450791-3450810 | None:intergenic | 25.0% |
| ! | TCATATCTATAGAAAACCAA+CGG | - | chr7_3:3450823-3450842 | Msa1089850:CDS | 25.0% |
| ! | GAATTGTATATTTCAGAAAC+AGG | + | chr7_3:3450872-3450891 | None:intergenic | 25.0% |
| ! | TAACATTCGCTTACAAAATA+AGG | + | chr7_3:3451233-3451252 | None:intergenic | 25.0% |
| ! | GCGAATGTTATGATTTAAAA+TGG | - | chr7_3:3451243-3451262 | Msa1089850:exon | 25.0% |
| ! | AATTCTGTCAAGAAAAATGT+GGG | + | chr7_3:3451332-3451351 | None:intergenic | 25.0% |
| ACTAGTAAGAAGATCGAAAA+TGG | - | chr7_3:3445528-3445547 | Msa1089850:three_prime_UTR | 30.0% | |
| CAGCATAAACAGCTATAATT+TGG | + | chr7_3:3445873-3445892 | None:intergenic | 30.0% | |
| GTGAGGAACCAAAAAAAAAT+TGG | + | chr7_3:3446163-3446182 | None:intergenic | 30.0% | |
| AAAACACAGACAAACTTTGA+TGG | + | chr7_3:3446289-3446308 | None:intergenic | 30.0% | |
| AGTGTGTTTGATCTACTAAA+AGG | + | chr7_3:3446356-3446375 | None:intergenic | 30.0% | |
| ATGTGTTACGATTTAATTGG+AGG | - | chr7_3:3446376-3446395 | Msa1089850:intron | 30.0% | |
| TTTGTATTTCTTCAGGCAAA+TGG | - | chr7_3:3446499-3446518 | Msa1089850:CDS | 30.0% | |
| TGCTGCATATTTAGTTACTT+TGG | - | chr7_3:3446525-3446544 | Msa1089850:intron | 30.0% | |
| TTCTGCGCTTATTAATTGAA+AGG | - | chr7_3:3446584-3446603 | Msa1089850:intron | 30.0% | |
| ! | TTGAATGTATTGACATCTGT+CGG | - | chr7_3:3446704-3446723 | Msa1089850:intron | 30.0% |
| ATTCAATAAGTTTCAGTGCT+AGG | - | chr7_3:3446757-3446776 | Msa1089850:intron | 30.0% | |
| TTCAATAAGTTTCAGTGCTA+GGG | - | chr7_3:3446758-3446777 | Msa1089850:intron | 30.0% | |
| TCTTTGTGGGAAGAATATAA+TGG | + | chr7_3:3446895-3446914 | None:intergenic | 30.0% | |
| TCCCACAAAGAAAAGAAAAT+TGG | - | chr7_3:3446904-3446923 | Msa1089850:CDS | 30.0% | |
| ! | GCCAATTTTCTTTTCTTTGT+GGG | + | chr7_3:3446908-3446927 | None:intergenic | 30.0% |
| ! | TGCCAATTTTCTTTTCTTTG+TGG | + | chr7_3:3446909-3446928 | None:intergenic | 30.0% |
| ACATAATATTGATGTCTTCC+AGG | - | chr7_3:3446943-3446962 | Msa1089850:intron | 30.0% | |
| !! | ATCATACAAAGTCTTATTCC+TGG | + | chr7_3:3446964-3446983 | None:intergenic | 30.0% |
| ! | TGATCTTAGGTTGTCATATA+TGG | - | chr7_3:3446980-3446999 | Msa1089850:intron | 30.0% |
| GTGTTTATGAAAATTGGCAT+AGG | - | chr7_3:3447100-3447119 | Msa1089850:CDS | 30.0% | |
| GCTTCATAGATAATGTATGA+TGG | - | chr7_3:3447344-3447363 | Msa1089850:CDS | 30.0% | |
| ! | GGTTATCCTTTTGAATTTCA+AGG | - | chr7_3:3447426-3447445 | Msa1089850:intron | 30.0% |
| ! | TTTCAAGGCTTTATGAAGAT+AGG | - | chr7_3:3447441-3447460 | Msa1089850:intron | 30.0% |
| ! | ATTTTCCTTACAAAGCAAGA+TGG | - | chr7_3:3447546-3447565 | Msa1089850:intron | 30.0% |
| CAATCGTTTATGATCATTTG+GGG | - | chr7_3:3447648-3447667 | Msa1089850:intron | 30.0% | |
| AATCGTTTATGATCATTTGG+GGG | - | chr7_3:3447649-3447668 | Msa1089850:intron | 30.0% | |
| ATATATTCCACACTCAACTT+TGG | - | chr7_3:3447674-3447693 | Msa1089850:CDS | 30.0% | |
| TATATTCCACACTCAACTTT+GGG | - | chr7_3:3447675-3447694 | Msa1089850:CDS | 30.0% | |
| AAGAAAGAGAATGTGAACAA+TGG | - | chr7_3:3447980-3447999 | Msa1089850:intron | 30.0% | |
| AAAATCTCTCGTCTGATTAT+TGG | - | chr7_3:3448036-3448055 | Msa1089850:intron | 30.0% | |
| ! | GAGAATTTTCCATGCATTAT+CGG | + | chr7_3:3448142-3448161 | None:intergenic | 30.0% |
| !! | ACCAATCCTTTTGTTTAAAC+TGG | - | chr7_3:3448170-3448189 | Msa1089850:intron | 30.0% |
| ACCAGTTTAAACAAAAGGAT+TGG | + | chr7_3:3448174-3448193 | None:intergenic | 30.0% | |
| GTCAAACCAGTTTAAACAAA+AGG | + | chr7_3:3448179-3448198 | None:intergenic | 30.0% | |
| GAATTTCAAAGTTCACATAG+TGG | + | chr7_3:3448221-3448240 | None:intergenic | 30.0% | |
| AAGAATGACAGAAAGTTAGA+AGG | + | chr7_3:3448408-3448427 | None:intergenic | 30.0% | |
| ! | TCAAAATATTTTCCAATGCG+TGG | + | chr7_3:3448450-3448469 | None:intergenic | 30.0% |
| AGTATCAGCAAACTACAAAT+AGG | + | chr7_3:3448655-3448674 | None:intergenic | 30.0% | |
| ! | TTTAACTTCCTTAGTTGCTT+TGG | - | chr7_3:3448827-3448846 | Msa1089850:intron | 30.0% |
| TACTAGTAAGATCATGTTCA+TGG | + | chr7_3:3448886-3448905 | None:intergenic | 30.0% | |
| TGTAAATACTACGTTAATGC+TGG | - | chr7_3:3449036-3449055 | Msa1089850:intron | 30.0% | |
| ! | TGTATGTTACCAAGTTTTTC+TGG | - | chr7_3:3449059-3449078 | Msa1089850:intron | 30.0% |
| ! | ATTCTGCTGATATGTTCTTT+TGG | - | chr7_3:3449180-3449199 | Msa1089850:intron | 30.0% |
| ! | AGCTGGATTTTATATTTGCT+GGG | - | chr7_3:3449362-3449381 | Msa1089850:intron | 30.0% |
| CTGGATTACTATTTGTCATT+TGG | - | chr7_3:3449745-3449764 | Msa1089850:intron | 30.0% | |
| CTATATAATGCAAGTCAGAT+TGG | - | chr7_3:3449785-3449804 | Msa1089850:intron | 30.0% | |
| CACTAAGTTGTTGTAATGAT+TGG | - | chr7_3:3449983-3450002 | Msa1089850:intron | 30.0% | |
| !! | CACATTTTAAGTCAAATGTC+TGG | + | chr7_3:3450043-3450062 | None:intergenic | 30.0% |
| AAGAATGCAGCTAATATTTC+GGG | + | chr7_3:3450300-3450319 | None:intergenic | 30.0% | |
| GAAGAATGCAGCTAATATTT+CGG | + | chr7_3:3450301-3450320 | None:intergenic | 30.0% | |
| AAATATTAGCTGCATTCTTC+TGG | - | chr7_3:3450301-3450320 | Msa1089850:intron | 30.0% | |
| AGAAATATCACGTAGAAGTA+AGG | + | chr7_3:3450437-3450456 | None:intergenic | 30.0% | |
| ! | TTTTTGCTCGATCAAAAAGA+AGG | + | chr7_3:3450466-3450485 | None:intergenic | 30.0% |
| ! | TTCTTTTTGATCGAGCAAAA+AGG | - | chr7_3:3450465-3450484 | Msa1089850:intron | 30.0% |
| ! | TCTTTTTGATCGAGCAAAAA+GGG | - | chr7_3:3450466-3450485 | Msa1089850:intron | 30.0% |
| !! | TTAGTGTTGCTTATAGTTCT+TGG | - | chr7_3:3450532-3450551 | Msa1089850:intron | 30.0% |
| ! | AAAGTTTGCTTTATGAGTCA+TGG | - | chr7_3:3450621-3450640 | Msa1089850:intron | 30.0% |
| ! | ACTTTTTGCTAAAATCACAG+TGG | - | chr7_3:3450719-3450738 | Msa1089850:intron | 30.0% |
| AATTCTTTATTGCATTGCAG+TGG | + | chr7_3:3450901-3450920 | None:intergenic | 30.0% | |
| CATGAAATTTCATATTCCAC+TGG | + | chr7_3:3450967-3450986 | None:intergenic | 30.0% | |
| CAGTGGAATATGAAATTTCA+TGG | - | chr7_3:3450965-3450984 | Msa1089850:CDS | 30.0% | |
| AGTCATCATCAATATATTCC+TGG | + | chr7_3:3451093-3451112 | None:intergenic | 30.0% | |
| !! | TATATTGATGATGACTTGTC+TGG | - | chr7_3:3451097-3451116 | Msa1089850:intron | 30.0% |
| CAGAAGCAGTAAACAAAAAT+AGG | + | chr7_3:3451153-3451172 | None:intergenic | 30.0% | |
| TGTGGGAGATTTCTATTTAT+GGG | + | chr7_3:3451315-3451334 | None:intergenic | 30.0% | |
| ATGTGGGAGATTTCTATTTA+TGG | + | chr7_3:3451316-3451335 | None:intergenic | 30.0% | |
| GAATTCTGTCAAGAAAAATG+TGG | + | chr7_3:3451333-3451352 | None:intergenic | 30.0% | |
| AACATTGTGTGTGTCTATCA+CGG | - | chr7_3:3445430-3445449 | Msa1089850:three_prime_UTR | 35.0% | |
| AGTAAGAAGATCGAAAATGG+TGG | - | chr7_3:3445531-3445550 | Msa1089850:three_prime_UTR | 35.0% | |
| ACTTACAGTAGATTGACGAA+AGG | + | chr7_3:3445637-3445656 | None:intergenic | 35.0% | |
| ATGAAGATGGTTTACGATGA+CGG | - | chr7_3:3445750-3445769 | Msa1089850:intron | 35.0% | |
| ACAGCTATAATTTGGAAAGC+TGG | + | chr7_3:3445865-3445884 | None:intergenic | 35.0% | |
| GTCGTTGTTTGTATTTCTTC+AGG | - | chr7_3:3446492-3446511 | Msa1089850:CDS | 35.0% | |
| TGGTTACTTACATTGCACTT+TGG | - | chr7_3:3446545-3446564 | Msa1089850:intron | 35.0% | |
| TTACTTACATTGCACTTTGG+CGG | - | chr7_3:3446548-3446567 | Msa1089850:intron | 35.0% | |
| !! | TCATTGCTAGTCTTCTCAAT+TGG | - | chr7_3:3447046-3447065 | Msa1089850:intron | 35.0% |
| ! | TGATCAAAATTTTCCCAGTG+TGG | - | chr7_3:3447274-3447293 | Msa1089850:intron | 35.0% |
| ! | CATAGATAATGTATGATGGG+TGG | - | chr7_3:3447348-3447367 | Msa1089850:CDS | 35.0% |
| !! | GTATGATGGGTGGATATATT+TGG | - | chr7_3:3447358-3447377 | Msa1089850:CDS | 35.0% |
| ! | TCATTGCTAGTCTACTCAAT+TGG | - | chr7_3:3447405-3447424 | Msa1089850:CDS | 35.0% |
| !! | TTGCATGTATGTTTCAGGTT+TGG | - | chr7_3:3447611-3447630 | Msa1089850:intron | 35.0% |
| !! | TGCATGTATGTTTCAGGTTT+GGG | - | chr7_3:3447612-3447631 | Msa1089850:intron | 35.0% |
| TTGCATCAATGATCCTCTAA+AGG | + | chr7_3:3448069-3448088 | None:intergenic | 35.0% | |
| !! | GAGGCGGTAATTTTAAAGAA+AGG | + | chr7_3:3448096-3448115 | None:intergenic | 35.0% |
| ! | TTCTTGGTTTAGAATGAGAG+AGG | + | chr7_3:3448115-3448134 | None:intergenic | 35.0% |
| TCTCTCATTCTAAACCAAGA+AGG | - | chr7_3:3448114-3448133 | Msa1089850:intron | 35.0% | |
| TCACATAGTGGCATTATGAA+CGG | + | chr7_3:3448209-3448228 | None:intergenic | 35.0% | |
| GAATTAAACTCCACATGTCT+AGG | + | chr7_3:3448362-3448381 | None:intergenic | 35.0% | |
| ! | CACCTTTTTCCCATAAATGA+CGG | - | chr7_3:3448382-3448401 | Msa1089850:intron | 35.0% |
| TAACTTTCTGTCATTCTTGC+AGG | - | chr7_3:3448410-3448429 | Msa1089850:intron | 35.0% | |
| AACTTTCTGTCATTCTTGCA+GGG | - | chr7_3:3448411-3448430 | Msa1089850:intron | 35.0% | |
| ! | GTTTTCACAAACTGCAGATT+TGG | - | chr7_3:3448477-3448496 | Msa1089850:intron | 35.0% |
| ! | TTTTCCAACTAAATGCTGGA+TGG | + | chr7_3:3448608-3448627 | None:intergenic | 35.0% |
| ! | TGTGTTTTCCAACTAAATGC+TGG | + | chr7_3:3448612-3448631 | None:intergenic | 35.0% |
| !! | AGGTTCAAACTGTTTCTACA+AGG | + | chr7_3:3448679-3448698 | None:intergenic | 35.0% |
| TTGTAGAAACAGTTTGAACC+TGG | - | chr7_3:3448678-3448697 | Msa1089850:intron | 35.0% | |
| TGTAGAAACAGTTTGAACCT+GGG | - | chr7_3:3448679-3448698 | Msa1089850:intron | 35.0% | |
| TAGTAAGATCATGTTCATGG+AGG | + | chr7_3:3448883-3448902 | None:intergenic | 35.0% | |
| TTTGTGAAATTTCCACCCTT+TGG | - | chr7_3:3448943-3448962 | Msa1089850:CDS | 35.0% | |
| ATAGAGAATTAACCAAAGGG+TGG | + | chr7_3:3448958-3448977 | None:intergenic | 35.0% | |
| ! | ATGTTACCAAGTTTTTCTGG+TGG | - | chr7_3:3449062-3449081 | Msa1089850:intron | 35.0% |
| !! | TGTTACCAAGTTTTTCTGGT+GGG | - | chr7_3:3449063-3449082 | Msa1089850:intron | 35.0% |
| GAACATATCAGCAGAATGAT+AGG | + | chr7_3:3449177-3449196 | None:intergenic | 35.0% | |
| TGAAATCCAGTTGTTATGGA+AGG | + | chr7_3:3449251-3449270 | None:intergenic | 35.0% | |
| AAATCCAGCTGCAAGATTTA+GGG | + | chr7_3:3449352-3449371 | None:intergenic | 35.0% | |
| AAAATCCAGCTGCAAGATTT+AGG | + | chr7_3:3449353-3449372 | None:intergenic | 35.0% | |
| ! | CAGCTGGATTTTATATTTGC+TGG | - | chr7_3:3449361-3449380 | Msa1089850:intron | 35.0% |
| !! | GCTGGATTTTATATTTGCTG+GGG | - | chr7_3:3449363-3449382 | Msa1089850:intron | 35.0% |
| !!! | GCTAGCACTCTTTATTTTAG+TGG | - | chr7_3:3449598-3449617 | Msa1089850:intron | 35.0% |
| ACATCAACTATGATTGTGAC+AGG | - | chr7_3:3449639-3449658 | Msa1089850:intron | 35.0% | |
| TAGGACAAATGGAAAAAGCT+TGG | - | chr7_3:3449679-3449698 | Msa1089850:intron | 35.0% | |
| AAATGGAAAAAGCTTGGTCT+GGG | - | chr7_3:3449685-3449704 | Msa1089850:intron | 35.0% | |
| CTATGCATCTTTACCTTTGA+TGG | + | chr7_3:3449719-3449738 | None:intergenic | 35.0% | |
| !!! | AGCTTAAGCTCGCTATTTTT+TGG | - | chr7_3:3450009-3450028 | Msa1089850:intron | 35.0% |
| !!! | GCTTAAGCTCGCTATTTTTT+GGG | - | chr7_3:3450010-3450029 | Msa1089850:intron | 35.0% |
| !!! | CTTAAGCTCGCTATTTTTTG+GGG | - | chr7_3:3450011-3450030 | Msa1089850:intron | 35.0% |
| GTAGCACAGAAAAAGTGAAT+TGG | + | chr7_3:3450240-3450259 | None:intergenic | 35.0% | |
| AGAATGCAGCTAATATTTCG+GGG | + | chr7_3:3450299-3450318 | None:intergenic | 35.0% | |
| TTACGTGATTGAATAGAGCT+GGG | + | chr7_3:3450332-3450351 | None:intergenic | 35.0% | |
| !! | GATGACAAAAAGAGCATCTT+TGG | + | chr7_3:3450586-3450605 | None:intergenic | 35.0% |
| GATGATGAGTTTGACAGAAT+CGG | + | chr7_3:3450749-3450768 | None:intergenic | 35.0% | |
| ! | ACTGAACTTTTCATTACCAG+TGG | - | chr7_3:3450948-3450967 | Msa1089850:CDS | 35.0% |
| TGAAAATTTCCACTTCATGC+AGG | - | chr7_3:3451016-3451035 | Msa1089850:CDS | 35.0% | |
| ATTCCTGGAATGATTCTGTA+AGG | + | chr7_3:3451078-3451097 | None:intergenic | 35.0% | |
| GTTTACCATTGCATCTTAAG+TGG | + | chr7_3:3451176-3451195 | None:intergenic | 35.0% | |
| ATTCCTAGCTCATATATACG+AGG | + | chr7_3:3451369-3451388 | None:intergenic | 35.0% | |
| GAGTGGTGAATGTACTGTTT+CGG | + | chr7_3:3445572-3445591 | None:intergenic | 40.0% | |
| ! | ATAGAAGCATATGTGACGAG+TGG | + | chr7_3:3445589-3445608 | None:intergenic | 40.0% |
| TACAGTAGATTGACGAAAGG+AGG | + | chr7_3:3445634-3445653 | None:intergenic | 40.0% | |
| !! | AAAGCTGGAAGTGTTGGTTT+AGG | + | chr7_3:3445850-3445869 | None:intergenic | 40.0% |
| ! | ATTTGGAAAGCTGGAAGTGT+TGG | + | chr7_3:3445856-3445875 | None:intergenic | 40.0% |
| ACACACAGACCTTATAGACA+GGG | + | chr7_3:3445969-3445988 | None:intergenic | 40.0% | |
| AGTTGTGTTGTGGTTTAGTG+AGG | + | chr7_3:3446180-3446199 | None:intergenic | 40.0% | |
| AATTGGCATAGGAGATCTCA+CGG | - | chr7_3:3447111-3447130 | Msa1089850:CDS | 40.0% | |
| ! | TTGAAGTGTCAGTGCTACAT+AGG | + | chr7_3:3447187-3447206 | None:intergenic | 40.0% |
| ! | GCACTGACACTTCAAATTGA+AGG | - | chr7_3:3447192-3447211 | Msa1089850:intron | 40.0% |
| !! | ATGAAGCATTGACACAGACA+CGG | + | chr7_3:3447331-3447350 | None:intergenic | 40.0% |
| GCAAACCATCTTGCTTTGTA+AGG | + | chr7_3:3447554-3447573 | None:intergenic | 40.0% | |
| GAACCAGAATCAGTAGAAGA+TGG | + | chr7_3:3447838-3447857 | None:intergenic | 40.0% | |
| !! | TCTACTGATTCTGGTTCAAG+TGG | - | chr7_3:3447841-3447860 | Msa1089850:intron | 40.0% |
| !! | CTACTGATTCTGGTTCAAGT+GGG | - | chr7_3:3447842-3447861 | Msa1089850:intron | 40.0% |
| ! | TTGGTTTAGAATGAGAGAGG+CGG | + | chr7_3:3448112-3448131 | None:intergenic | 40.0% |
| CGTCATTTATGGGAAAAAGG+TGG | + | chr7_3:3448384-3448403 | None:intergenic | 40.0% | |
| GTTAGAAGGCCGTCATTTAT+GGG | + | chr7_3:3448394-3448413 | None:intergenic | 40.0% | |
| AGTTAGAAGGCCGTCATTTA+TGG | + | chr7_3:3448395-3448414 | None:intergenic | 40.0% | |
| ! | CAGATTTGGAATGATGTCGT+GGG | - | chr7_3:3448491-3448510 | Msa1089850:intron | 40.0% |
| ACTTACCTACTGCATAAAGC+AGG | - | chr7_3:3448524-3448543 | Msa1089850:intron | 40.0% | |
| GTAGAAACAGTTTGAACCTG+GGG | - | chr7_3:3448680-3448699 | Msa1089850:intron | 40.0% | |
| CACTGTATCCAAAGCAACTA+AGG | + | chr7_3:3448838-3448857 | None:intergenic | 40.0% | |
| ! | CTTAGTTGCTTTGGATACAG+TGG | - | chr7_3:3448836-3448855 | Msa1089850:intron | 40.0% |
| ACCATACCTTCCATAACAAC+TGG | - | chr7_3:3449242-3449261 | Msa1089850:intron | 40.0% | |
| TCCAGTTGTTATGGAAGGTA+TGG | + | chr7_3:3449246-3449265 | None:intergenic | 40.0% | |
| GATTTAGGGACACGATAAAG+AGG | + | chr7_3:3449338-3449357 | None:intergenic | 40.0% | |
| ! | TTATATTTGCTGGGGCTGTT+TGG | - | chr7_3:3449371-3449390 | Msa1089850:intron | 40.0% |
| ACAACAGCTCAAACAGGAAT+GGG | + | chr7_3:3449475-3449494 | None:intergenic | 40.0% | |
| AACAACAGCTCAAACAGGAA+TGG | + | chr7_3:3449476-3449495 | None:intergenic | 40.0% | |
| CACAAAACAACAGCTCAAAC+AGG | + | chr7_3:3449481-3449500 | None:intergenic | 40.0% | |
| !!! | CTGTTTGAGCTGTTGTTTTG+TGG | - | chr7_3:3449479-3449498 | Msa1089850:intron | 40.0% |
| !!! | GCACTCTTTATTTTAGTGGC+TGG | - | chr7_3:3449602-3449621 | Msa1089850:intron | 40.0% |
| ACTATGATTGTGACAGGCAA+AGG | - | chr7_3:3449645-3449664 | Msa1089850:intron | 40.0% | |
| CAAGAGTTTCGTAGGACAAA+TGG | - | chr7_3:3449668-3449687 | Msa1089850:intron | 40.0% | |
| CAAATGGAAAAAGCTTGGTC+TGG | - | chr7_3:3449684-3449703 | Msa1089850:intron | 40.0% | |
| AATGGAAAAAGCTTGGTCTG+GGG | - | chr7_3:3449686-3449705 | Msa1089850:intron | 40.0% | |
| !! | AAGGCTTCTTTTTGTTTCCC+CGG | + | chr7_3:3449892-3449911 | None:intergenic | 40.0% |
| ! | AGAAGCCTTCTTTTAACCTC+TGG | - | chr7_3:3449903-3449922 | Msa1089850:intron | 40.0% |
| ACCATCCAGAGGTTAAAAGA+AGG | + | chr7_3:3449911-3449930 | None:intergenic | 40.0% | |
| CTTACGTGATTGAATAGAGC+TGG | + | chr7_3:3450333-3450352 | None:intergenic | 40.0% | |
| GTTTGCTTTATGAGTCATGG+CGG | - | chr7_3:3450624-3450643 | Msa1089850:intron | 40.0% | |
| CCAAATCTGGTTGAAACAGT+AGG | + | chr7_3:3450849-3450868 | None:intergenic | 40.0% | |
| CCTACTGTTTCAACCAGATT+TGG | - | chr7_3:3450846-3450865 | Msa1089850:CDS | 40.0% | |
| TTTCAGAAACAGGCCAAATC+TGG | + | chr7_3:3450862-3450881 | None:intergenic | 40.0% | |
| ATTTCCACTTCATGCAGGTA+TGG | - | chr7_3:3451021-3451040 | Msa1089850:intron | 40.0% | |
| GTACCTTACAGAATCATTCC+AGG | - | chr7_3:3451072-3451091 | Msa1089850:intron | 40.0% | |
| ! | TTCTGCCACTTAAGATGCAA+TGG | - | chr7_3:3451168-3451187 | Msa1089850:CDS | 40.0% |
| TCATATATACGAGGACTCCA+TGG | + | chr7_3:3451360-3451379 | None:intergenic | 40.0% | |
| AGTCCTCGTATATATGAGCT+AGG | - | chr7_3:3451363-3451382 | Msa1089850:five_prime_UTR | 40.0% | |
| ! | ATGGTTTACGATGACGGCTA+TGG | - | chr7_3:3445756-3445775 | Msa1089850:intron | 45.0% |
| ! | TTTACGATGACGGCTATGGA+TGG | - | chr7_3:3445760-3445779 | Msa1089850:intron | 45.0% |
| TCACTTCAGCTTCTTCTTCC+TGG | - | chr7_3:3445904-3445923 | Msa1089850:intron | 45.0% | |
| CTTCCTGGTCAAACTGTCTA+CGG | - | chr7_3:3445919-3445938 | Msa1089850:intron | 45.0% | |
| GACACACAGACCTTATAGAC+AGG | + | chr7_3:3445970-3445989 | None:intergenic | 45.0% | |
| CAGGGAGGGACAAAAATTTC+AGG | + | chr7_3:3446107-3446126 | None:intergenic | 45.0% | |
| ACTTTGGCGGTGAGTTCTTA+TGG | - | chr7_3:3446561-3446580 | Msa1089850:intron | 45.0% | |
| AAGTGTCAGTGCTACATAGG+AGG | + | chr7_3:3447184-3447203 | None:intergenic | 45.0% | |
| ! | CAGTGTCTATGTGTTGGTGT+CGG | - | chr7_3:3447297-3447316 | Msa1089850:intron | 45.0% |
| AAAGCTCCCAAAGTTGAGTG+TGG | + | chr7_3:3447684-3447703 | None:intergenic | 45.0% | |
| !! | GCACCATCTTCTACTGATTC+TGG | - | chr7_3:3447832-3447851 | Msa1089850:intron | 45.0% |
| TATTGGCGTTGTGCCTTTAG+AGG | - | chr7_3:3448053-3448072 | Msa1089850:intron | 45.0% | |
| ! | ATGCATTATCGGTGCCTTCT+TGG | + | chr7_3:3448131-3448150 | None:intergenic | 45.0% |
| !! | AAGAAGGCACCGATAATGCA+TGG | - | chr7_3:3448130-3448149 | Msa1089850:intron | 45.0% |
| GAATAACAGGCCTAGACATG+TGG | - | chr7_3:3448349-3448368 | Msa1089850:intron | 45.0% | |
| GGCCGTCATTTATGGGAAAA+AGG | + | chr7_3:3448387-3448406 | None:intergenic | 45.0% | |
| TCTGTCATTCTTGCAGGGTA+TGG | - | chr7_3:3448416-3448435 | Msa1089850:intron | 45.0% | |
| ! | GCAGATTTGGAATGATGTCG+TGG | - | chr7_3:3448490-3448509 | Msa1089850:intron | 45.0% |
| CTCAACCTGCTTTATGCAGT+AGG | + | chr7_3:3448532-3448551 | None:intergenic | 45.0% | |
| ! | TAAAGCAGGTTGAGTCTACG+AGG | - | chr7_3:3448538-3448557 | Msa1089850:intron | 45.0% |
| TGCTGGATGGCACAATCATT+AGG | + | chr7_3:3448595-3448614 | None:intergenic | 45.0% | |
| TGTGCCATCCAGCATTTAGT+TGG | - | chr7_3:3448601-3448620 | Msa1089850:intron | 45.0% | |
| CAGCTTCTATGGAGCTTGAT+TGG | + | chr7_3:3448724-3448743 | None:intergenic | 45.0% | |
| ATCAAGCTCCATAGAAGCTG+AGG | - | chr7_3:3448724-3448743 | Msa1089850:intron | 45.0% | |
| GGCAATAAGTCAGTACCAAC+TGG | + | chr7_3:3448862-3448881 | None:intergenic | 45.0% | |
| AGCTTCCCACCAGAAAAACT+TGG | + | chr7_3:3449071-3449090 | None:intergenic | 45.0% | |
| !! | AAGTTTTTCTGGTGGGAAGC+TGG | - | chr7_3:3449070-3449089 | Msa1089850:CDS | 45.0% |
| ATGGATATTGCACACGATCG+AGG | - | chr7_3:3449106-3449125 | Msa1089850:CDS | 45.0% | |
| CCAGGAGATGTATACACTGA+TGG | + | chr7_3:3449405-3449424 | None:intergenic | 45.0% | |
| CCATCAGTGTATACATCTCC+TGG | - | chr7_3:3449402-3449421 | Msa1089850:intron | 45.0% | |
| TGGTTGACAAGGTACATTCC+AGG | + | chr7_3:3449423-3449442 | None:intergenic | 45.0% | |
| GATTCACTGGATGGTTGACA+AGG | + | chr7_3:3449434-3449453 | None:intergenic | 45.0% | |
| GTCAACCATCCAGTGAATCT+TGG | - | chr7_3:3449435-3449454 | Msa1089850:intron | 45.0% | |
| ! | GCCTTCTTTTAACCTCTGGA+TGG | - | chr7_3:3449907-3449926 | Msa1089850:intron | 45.0% |
| AAGGGATATGTACCATCCAG+AGG | + | chr7_3:3449922-3449941 | None:intergenic | 45.0% | |
| !!! | AAGCTCGCTATTTTTTGGGG+TGG | - | chr7_3:3450014-3450033 | Msa1089850:intron | 45.0% |
| !! | ACTTTTTCTGTGCTACCTGC+AGG | - | chr7_3:3450244-3450263 | Msa1089850:CDS | 45.0% |
| AAGTAAGGCAAGAACTGCAC+GGG | + | chr7_3:3450422-3450441 | None:intergenic | 45.0% | |
| GAAGTAAGGCAAGAACTGCA+CGG | + | chr7_3:3450423-3450442 | None:intergenic | 45.0% | |
| CTTTCCATACCTGCATGAAG+TGG | + | chr7_3:3451028-3451047 | None:intergenic | 45.0% | |
| ! | CATGCAGGTATGGAAAGTAC+TGG | - | chr7_3:3451031-3451050 | Msa1089850:intron | 45.0% |
| ACTGGAAACTCTATTGCGAC+AGG | - | chr7_3:3451049-3451068 | Msa1089850:intron | 45.0% | |
| CTGGAAACTCTATTGCGACA+GGG | - | chr7_3:3451050-3451069 | Msa1089850:intron | 45.0% | |
| GTAAACATGGCAGCAAGTGA+AGG | + | chr7_3:3451131-3451150 | None:intergenic | 45.0% | |
| CTTGACAGAATTCTCCTCCA+TGG | - | chr7_3:3451340-3451359 | Msa1089850:five_prime_UTR | 45.0% | |
| TATATACGAGGACTCCATGG+AGG | + | chr7_3:3451357-3451376 | None:intergenic | 45.0% | |
| ! | TACGGTCCTATTTCTCCCAC+CGG | - | chr7_3:3445937-3445956 | Msa1089850:intron | 50.0% |
| CTTATAGACAGGGCGGTTAC+CGG | + | chr7_3:3445959-3445978 | None:intergenic | 50.0% | |
| CACAGACCTTATAGACAGGG+CGG | + | chr7_3:3445966-3445985 | None:intergenic | 50.0% | |
| TTTGTCTTGTCTTGCCCCAC+AGG | + | chr7_3:3446138-3446157 | None:intergenic | 50.0% | |
| ACATCTGTCGGTGACATGTG+TGG | - | chr7_3:3446716-3446735 | Msa1089850:intron | 50.0% | |
| CATCTGTCGGTGACATGTGT+GGG | - | chr7_3:3446717-3446736 | Msa1089850:intron | 50.0% | |
| CACATAGACACTGCCACACT+GGG | + | chr7_3:3447290-3447309 | None:intergenic | 50.0% | |
| ACACATAGACACTGCCACAC+TGG | + | chr7_3:3447291-3447310 | None:intergenic | 50.0% | |
| GTGTGGCAGTGTCTATGTGT+TGG | - | chr7_3:3447291-3447310 | Msa1089850:intron | 50.0% | |
| ATGGAGCTCTATCCACGCAT+TGG | - | chr7_3:3448435-3448454 | Msa1089850:intron | 50.0% | |
| ! | AATGATGTCGTGGGCTGTTC+TGG | - | chr7_3:3448500-3448519 | Msa1089850:intron | 50.0% |
| ! | GATTGGTCACCTAACCACCA+AGG | + | chr7_3:3448707-3448726 | None:intergenic | 50.0% |
| GTAGATGGCCTCAGCTTCTA+TGG | + | chr7_3:3448735-3448754 | None:intergenic | 50.0% | |
| CTTTGGATACAGTGGCCAGT+TGG | - | chr7_3:3448844-3448863 | Msa1089850:intron | 50.0% | |
| AGCTGGATACTGGAACACGA+TGG | - | chr7_3:3449087-3449106 | Msa1089850:CDS | 50.0% | |
| GTGTCCCTAAATCTTGCAGC+TGG | - | chr7_3:3449345-3449364 | Msa1089850:intron | 50.0% | |
| TTTGCTGGGGCTGTTTGGTT+TGG | - | chr7_3:3449376-3449395 | Msa1089850:intron | 50.0% | |
| ! | TTGCTGGGGCTGTTTGGTTT+GGG | - | chr7_3:3449377-3449396 | Msa1089850:intron | 50.0% |
| ACAGGAATGGGATGGTACCT+GGG | + | chr7_3:3449463-3449482 | None:intergenic | 50.0% | |
| AACAGGAATGGGATGGTACC+TGG | + | chr7_3:3449464-3449483 | None:intergenic | 50.0% | |
| CAGCTCAAACAGGAATGGGA+TGG | + | chr7_3:3449471-3449490 | None:intergenic | 50.0% | |
| GGCAAAGGCAAGAGTTTCGT+AGG | - | chr7_3:3449660-3449679 | Msa1089850:intron | 50.0% | |
| CTGGGGAAAAGCTCCATCAA+AGG | - | chr7_3:3449703-3449722 | Msa1089850:intron | 50.0% | |
| GCCTCATATACCACTGCTTC+CGG | - | chr7_3:3449870-3449889 | Msa1089850:intron | 50.0% | |
| CCTCATATACCACTGCTTCC+GGG | - | chr7_3:3449871-3449890 | Msa1089850:intron | 50.0% | |
| CTCATATACCACTGCTTCCG+GGG | - | chr7_3:3449872-3449891 | Msa1089850:intron | 50.0% | |
| !! | TTTTGTTTCCCCGGAAGCAG+TGG | + | chr7_3:3449883-3449902 | None:intergenic | 50.0% |
| ! | TTTTCTGTGCTACCTGCAGG+TGG | - | chr7_3:3450247-3450266 | Msa1089850:CDS | 50.0% |
| TTTCTGTGCTACCTGCAGGT+GGG | - | chr7_3:3450248-3450267 | Msa1089850:CDS | 50.0% | |
| ATGGCGGTGCATGTTTGGAT+CGG | - | chr7_3:3450640-3450659 | Msa1089850:intron | 50.0% | |
| TGGTTGAAACAGTAGGCCGT+TGG | + | chr7_3:3450842-3450861 | None:intergenic | 50.0% | |
| CATGGCAGCAAGTGAAGGAT+AGG | + | chr7_3:3451126-3451145 | None:intergenic | 50.0% | |
| GGACCGTAGACAGTTTGACC+AGG | + | chr7_3:3445925-3445944 | None:intergenic | 55.0% | |
| CGGTTACCGGTGGGAGAAAT+AGG | + | chr7_3:3445946-3445965 | None:intergenic | 55.0% | |
| CGGTAACCGCCCTGTCTATA+AGG | - | chr7_3:3445957-3445976 | Msa1089850:intron | 55.0% | |
| CAGTTTGAACCTGGGGACCT+TGG | - | chr7_3:3448687-3448706 | Msa1089850:intron | 55.0% | |
| TTTGAACCTGGGGACCTTGG+TGG | - | chr7_3:3448690-3448709 | Msa1089850:intron | 55.0% | |
| TCTGGTGGGAAGCTGGATAC+TGG | - | chr7_3:3449077-3449096 | Msa1089850:CDS | 55.0% | |
| GGGTGCCAAGATTCACTGGA+TGG | + | chr7_3:3449443-3449462 | None:intergenic | 55.0% | |
| TCCAGTGAATCTTGGCACCC+AGG | - | chr7_3:3449443-3449462 | Msa1089850:intron | 55.0% | |
| ACCTGGGTGCCAAGATTCAC+TGG | + | chr7_3:3449447-3449466 | None:intergenic | 55.0% | |
| CCCGGAAGCAGTGGTATATG+AGG | + | chr7_3:3449874-3449893 | None:intergenic | 55.0% | |
| TTCTGTGCTACCTGCAGGTG+GGG | - | chr7_3:3450249-3450268 | Msa1089850:CDS | 55.0% | |
| GAGTCATGGCGGTGCATGTT+TGG | - | chr7_3:3450635-3450654 | Msa1089850:intron | 55.0% | |
| TAGACAGGGCGGTTACCGGT+GGG | + | chr7_3:3445955-3445974 | None:intergenic | 60.0% | |
| ATAGACAGGGCGGTTACCGG+TGG | + | chr7_3:3445956-3445975 | None:intergenic | 60.0% | |
| TTGTCTTGCCCCACAGGCAC+AGG | + | chr7_3:3446132-3446151 | None:intergenic | 60.0% | |
| CGGTGACATGTGTGGGACAC+TGG | - | chr7_3:3446724-3446743 | Msa1089850:intron | 60.0% | |
| ! | ACCTGGGGACCTTGGTGGTT+AGG | - | chr7_3:3448695-3448714 | Msa1089850:intron | 60.0% |
| ACCTAACCACCAAGGTCCCC+AGG | + | chr7_3:3448699-3448718 | None:intergenic | 60.0% | |
| ACGAGCTAATCCCCACCTGC+AGG | + | chr7_3:3450262-3450281 | None:intergenic | 60.0% | |
| CACAGGCACAGGCACAGGGA+GGG | + | chr7_3:3446121-3446140 | None:intergenic | 65.0% | |
| CTCCCTGTGCCTGTGCCTGT+GGG | - | chr7_3:3446120-3446139 | Msa1089850:intron | 65.0% | |
| TCCCTGTGCCTGTGCCTGTG+GGG | - | chr7_3:3446121-3446140 | Msa1089850:intron | 65.0% | |
| CCACAGGCACAGGCACAGGG+AGG | + | chr7_3:3446122-3446141 | None:intergenic | 70.0% | |
| CCTCCCTGTGCCTGTGCCTG+TGG | - | chr7_3:3446119-3446138 | Msa1089850:intron | 70.0% | |
| GCCCCACAGGCACAGGCACA+GGG | + | chr7_3:3446125-3446144 | None:intergenic | 70.0% | |
| TGCCCCACAGGCACAGGCAC+AGG | + | chr7_3:3446126-3446145 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 3445402 | 3451392 | 3445402 | ID=Msa1089850;Name=Msa1089850 |
| chr7_3 | mRNA | 3445402 | 3451392 | 3445402 | ID=Msa1089850-mRNA-1;Parent=Msa1089850;Name=Msa1089850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=145|1|1|1|1|1|13|288|438 |
| chr7_3 | exon | 3445402 | 3445756 | 3445402 | ID=Msa1089850-mRNA-1:exon:1377;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3446284 | 3446366 | 3446284 | ID=Msa1089850-mRNA-1:exon:1376;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3446447 | 3446528 | 3446447 | ID=Msa1089850-mRNA-1:exon:1375;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3446866 | 3446930 | 3446866 | ID=Msa1089850-mRNA-1:exon:1374;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3447070 | 3447195 | 3447070 | ID=Msa1089850-mRNA-1:exon:1373;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3447330 | 3447430 | 3447330 | ID=Msa1089850-mRNA-1:exon:1372;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3447667 | 3447793 | 3447667 | ID=Msa1089850-mRNA-1:exon:1371;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3448249 | 3448362 | 3448249 | ID=Msa1089850-mRNA-1:exon:1370;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3448906 | 3448971 | 3448906 | ID=Msa1089850-mRNA-1:exon:1369;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3449064 | 3449166 | 3449064 | ID=Msa1089850-mRNA-1:exon:1368;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3450225 | 3450280 | 3450225 | ID=Msa1089850-mRNA-1:exon:1367;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3450816 | 3451038 | 3450816 | ID=Msa1089850-mRNA-1:exon:1366;Parent=Msa1089850-mRNA-1 |
| chr7_3 | exon | 3451144 | 3451392 | 3451144 | ID=Msa1089850-mRNA-1:exon:1365;Parent=Msa1089850-mRNA-1 |
| chr7_3 | five_prime_UTR | 3451248 | 3451392 | 3451248 | ID=Msa1089850-mRNA-1:five_prime_utr;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3451144 | 3451247 | 3451144 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3450816 | 3451038 | 3450816 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3450225 | 3450280 | 3450225 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3449064 | 3449166 | 3449064 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3448906 | 3448971 | 3448906 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3448249 | 3448362 | 3448249 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3447667 | 3447793 | 3447667 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3447330 | 3447430 | 3447330 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3447070 | 3447195 | 3447070 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3446866 | 3446930 | 3446866 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3446447 | 3446528 | 3446447 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3446284 | 3446366 | 3446284 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | CDS | 3445690 | 3445756 | 3445690 | ID=Msa1089850-mRNA-1:cds;Parent=Msa1089850-mRNA-1 |
| chr7_3 | three_prime_UTR | 3445402 | 3445689 | 3445402 | ID=Msa1089850-mRNA-1:three_prime_utr;Parent=Msa1089850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
