Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269290 | XP_024638437.2 | 98.174 | 438 | 8 | 0 | 1 | 438 | 1 | 438 | 0.0 | 892 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269290 | sp|Q9LDU6|ST7R_ARATH | 83.063 | 431 | 73 | 0 | 8 | 438 | 2 | 432 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269290 | A0A396IDF0 | 96.811 | 439 | 12 | 2 | 1 | 438 | 1 | 438 | 0.0 | 872 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625100 | Msa1269290 | 0.867085 | 1.774018e-65 | -8.615850e-47 |
| Msa0670280 | Msa1269290 | 0.853453 | 2.365580e-61 | -8.615850e-47 |
| Msa0822380 | Msa1269290 | -0.803999 | 2.666429e-49 | -8.615850e-47 |
| Msa1269290 | Msa1400330 | -0.806261 | 8.962128e-50 | -8.615850e-47 |
| Msa1084630 | Msa1269290 | -0.805403 | 1.357356e-49 | -8.615850e-47 |
| Msa1089850 | Msa1269290 | 0.983544 | 4.942534e-158 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269290 | MtrunA17_Chr4g0051521 | 96.811 | 439 | 12 | 2 | 1 | 438 | 1 | 438 | 0.0 | 872 |
| Msa1269290 | MtrunA17_Chr4g0000371 | 99.357 | 311 | 2 | 0 | 128 | 438 | 5 | 315 | 0.0 | 647 |
| Msa1269290 | MtrunA17_Chr4g0051511 | 79.944 | 354 | 9 | 3 | 129 | 435 | 6 | 344 | 0.0 | 556 |
| Msa1269290 | MtrunA17_Chr4g0000381 | 94.495 | 109 | 6 | 0 | 1 | 109 | 1 | 109 | 6.56e-68 | 212 |
| Msa1269290 | MtrunA17_Chr1g0179361 | 29.815 | 379 | 236 | 9 | 70 | 438 | 11 | 369 | 1.42e-42 | 154 |
| Msa1269290 | MtrunA17_Chr4g0051501 | 85.135 | 74 | 9 | 2 | 1 | 73 | 1 | 73 | 3.96e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269290 | AT1G50430.1 | 83.063 | 431 | 73 | 0 | 8 | 438 | 2 | 432 | 0.0 | 756 |
| Msa1269290 | AT1G50430.2 | 83.063 | 431 | 72 | 1 | 8 | 438 | 2 | 431 | 0.0 | 753 |
| Msa1269290 | AT3G52940.1 | 29.921 | 381 | 234 | 9 | 68 | 438 | 12 | 369 | 9.04e-49 | 171 |
| Msa1269290 | AT3G52940.2 | 28.444 | 225 | 141 | 7 | 68 | 282 | 12 | 226 | 3.47e-20 | 90.1 |
Find 108 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGGGAGATTTCTATTTA+TGG | 0.117380 | 8_3:-2502753 | None:intergenic |
| CTATGCATCTTTACCTTTGA+TGG | 0.168728 | 8_3:-2501156 | None:intergenic |
| TCTTAATAGTATGAAGAAAA+TGG | 0.187237 | 8_3:+2500432 | Msa1269290:intron |
| GCACCATCTTCTACTGATTC+TGG | 0.211719 | 8_3:+2499272 | Msa1269290:CDS |
| TAACATTCGCTTACAAAATA+AGG | 0.224015 | 8_3:-2502670 | None:intergenic |
| AAATATTAGCTGCATTCTTC+TGG | 0.228561 | 8_3:+2501741 | Msa1269290:CDS |
| GCGAATGTTATGATTTAAAA+TGG | 0.252269 | 8_3:+2502683 | Msa1269290:three_prime_UTR |
| CAGCATAAACAGCTATAATT+TGG | 0.256261 | 8_3:-2497311 | None:intergenic |
| AACAATCGTTTATGATCATT+TGG | 0.260995 | 8_3:+2499086 | Msa1269290:CDS |
| TCACTTCAGCTTCTTCTTCC+TGG | 0.263974 | 8_3:+2497345 | Msa1269290:CDS |
| AAGAATGCAGCTAATATTTC+GGG | 0.270796 | 8_3:-2501737 | None:intergenic |
| TTGCTGGGGCTGTTTGGTTT+GGG | 0.285386 | 8_3:+2500817 | Msa1269290:CDS |
| TTTGCTGGGGCTGTTTGGTT+TGG | 0.288712 | 8_3:+2500816 | Msa1269290:CDS |
| TTTGATTATTTAAACAATAA+TGG | 0.292208 | 8_3:+2497240 | Msa1269290:CDS |
| CGGTTACCGGTGGGAGAAAT+AGG | 0.296586 | 8_3:-2497384 | None:intergenic |
| GAAGAATGCAGCTAATATTT+CGG | 0.298216 | 8_3:-2501738 | None:intergenic |
| TTATATTTGCTGGGGCTGTT+TGG | 0.304151 | 8_3:+2500811 | Msa1269290:CDS |
| TCTGGTGGGAAGCTGGATAC+TGG | 0.304373 | 8_3:+2500517 | Msa1269290:CDS |
| ACAATCGTTTATGATCATTT+GGG | 0.320331 | 8_3:+2499087 | Msa1269290:CDS |
| AATGATGTCGTGGGCTGTTC+TGG | 0.326706 | 8_3:+2499940 | Msa1269290:CDS |
| CGGTAACCGCCCTGTCTATA+AGG | 0.352628 | 8_3:+2497398 | Msa1269290:CDS |
| GCCTCATATACCACTGCTTC+CGG | 0.355351 | 8_3:+2501310 | Msa1269290:CDS |
| TGTGGGAGATTTCTATTTAT+GGG | 0.362125 | 8_3:-2502752 | None:intergenic |
| ACTAGTAAGAAGATCGAAAA+TGG | 0.366082 | 8_3:+2496969 | Msa1269290:exon |
| CCTCATATACCACTGCTTCC+GGG | 0.368880 | 8_3:+2501311 | Msa1269290:CDS |
| TTTGTATTTCTTCAGGCAAA+TGG | 0.379608 | 8_3:+2497940 | Msa1269290:intron |
| TATATTCCACACTCAACTTT+GGG | 0.397950 | 8_3:+2499115 | Msa1269290:CDS |
| TGCTGCATATTTAGTTACTT+TGG | 0.407451 | 8_3:+2497966 | Msa1269290:CDS |
| CTTAATAGTATGAAGAAAAT+GGG | 0.409251 | 8_3:+2500433 | Msa1269290:intron |
| AATGATCATAAACGATTGTT+GGG | 0.411459 | 8_3:-2499083 | None:intergenic |
| AAATGATCATAAACGATTGT+TGG | 0.417130 | 8_3:-2499084 | None:intergenic |
| ATATATTCCACACTCAACTT+TGG | 0.422367 | 8_3:+2499114 | Msa1269290:CDS |
| TTATATTTGATAGGGTCATT+TGG | 0.422502 | 8_3:+2499250 | Msa1269290:intron |
| AGTCATCATCAATATATTCC+TGG | 0.424853 | 8_3:-2502530 | None:intergenic |
| AGAAATATCACGTAGAAGTA+AGG | 0.430755 | 8_3:-2501874 | None:intergenic |
| AAAGCTGGAAGTGTTGGTTT+AGG | 0.432868 | 8_3:-2497288 | None:intergenic |
| GTCAACCATCCAGTGAATCT+TGG | 0.433126 | 8_3:+2500875 | Msa1269290:CDS |
| CTTATAGACAGGGCGGTTAC+CGG | 0.440174 | 8_3:-2497397 | None:intergenic |
| CAAGAGTTTCGTAGGACAAA+TGG | 0.441736 | 8_3:+2501108 | Msa1269290:CDS |
| ACAGCTATAATTTGGAAAGC+TGG | 0.448940 | 8_3:-2497303 | None:intergenic |
| TTACTTACATTGCACTTTGG+CGG | 0.449956 | 8_3:+2497989 | Msa1269290:CDS |
| CTTACGTGATTGAATAGAGC+TGG | 0.458940 | 8_3:-2501770 | None:intergenic |
| TATATTGATGATGACTTGTC+TGG | 0.471587 | 8_3:+2502537 | Msa1269290:exon |
| GTACCTTACAGAATCATTCC+AGG | 0.476122 | 8_3:+2502512 | Msa1269290:CDS |
| GTTTACCATTGCATCTTAAG+TGG | 0.477376 | 8_3:-2502613 | None:intergenic |
| CCATCAGTGTATACATCTCC+TGG | 0.477762 | 8_3:+2500842 | Msa1269290:CDS |
| CCCGGAAGCAGTGGTATATG+AGG | 0.482468 | 8_3:-2501311 | None:intergenic |
| ACCTGGGTGCCAAGATTCAC+TGG | 0.487320 | 8_3:-2500884 | None:intergenic |
| TGGTTGACAAGGTACATTCC+AGG | 0.489773 | 8_3:-2500860 | None:intergenic |
| CTTGACAGAATTCTCCTCCA+TGG | 0.491036 | 8_3:+2502780 | Msa1269290:three_prime_UTR |
| TTAAACAATAATGGTTTACA+AGG | 0.495899 | 8_3:+2497249 | Msa1269290:CDS |
| CATGGCAGCAAGTGAAGGAT+AGG | 0.502904 | 8_3:-2502563 | None:intergenic |
| ATTTGGAAAGCTGGAAGTGT+TGG | 0.506632 | 8_3:-2497294 | None:intergenic |
| GACACACAGACCTTATAGAC+AGG | 0.514299 | 8_3:-2497408 | None:intergenic |
| CTTCCTGGTCAAACTGTCTA+CGG | 0.517571 | 8_3:+2497360 | Msa1269290:CDS |
| ATTCCTGGAATGATTCTGTA+AGG | 0.518813 | 8_3:-2502515 | None:intergenic |
| ATGGTTTACGATGACGGCTA+TGG | 0.519049 | 8_3:+2497197 | Msa1269290:CDS |
| CATGCAGGTATGGAAAGTAC+TGG | 0.526601 | 8_3:+2502471 | Msa1269290:intron |
| CCAGGAGATGTATACACTGA+TGG | 0.529275 | 8_3:-2500842 | None:intergenic |
| ACTATGATTGTGACAGGCAA+AGG | 0.530436 | 8_3:+2501085 | Msa1269290:CDS |
| ATGAAGATGGTTTACGATGA+CGG | 0.530950 | 8_3:+2497191 | Msa1269290:intron |
| ACTGGAAACTCTATTGCGAC+AGG | 0.531995 | 8_3:+2502489 | Msa1269290:CDS |
| TGTAAATACTACGTTAATGC+TGG | 0.542689 | 8_3:+2500476 | Msa1269290:CDS |
| TCTACTGATTCTGGTTCAAG+TGG | 0.545372 | 8_3:+2499281 | Msa1269290:CDS |
| ATGGAGCTCTATCCACGCAT+TGG | 0.545997 | 8_3:+2499875 | Msa1269290:CDS |
| GAGTGGTGAATGTACTGTTT+CGG | 0.546974 | 8_3:-2497010 | None:intergenic |
| ACATCAACTATGATTGTGAC+AGG | 0.553357 | 8_3:+2501079 | Msa1269290:CDS |
| TTACGTGATTGAATAGAGCT+GGG | 0.555286 | 8_3:-2501769 | None:intergenic |
| CTCATATACCACTGCTTCCG+GGG | 0.558627 | 8_3:+2501312 | Msa1269290:CDS |
| TACGGTCCTATTTCTCCCAC+CGG | 0.572594 | 8_3:+2497378 | Msa1269290:CDS |
| CAATCGTTTATGATCATTTG+GGG | 0.573140 | 8_3:+2499088 | Msa1269290:CDS |
| TTCTGCCACTTAAGATGCAA+TGG | 0.573566 | 8_3:+2502608 | Msa1269290:three_prime_UTR |
| GTAAACATGGCAGCAAGTGA+AGG | 0.580459 | 8_3:-2502568 | None:intergenic |
| AGTCCTCGTATATATGAGCT+AGG | 0.581749 | 8_3:+2502803 | Msa1269290:three_prime_UTR |
| AACATTGTGTGTGTCTATCA+CGG | 0.584100 | 8_3:+2496871 | Msa1269290:five_prime_UTR |
| TGGTTACTTACATTGCACTT+TGG | 0.584119 | 8_3:+2497986 | Msa1269290:CDS |
| TCCAGTGAATCTTGGCACCC+AGG | 0.587162 | 8_3:+2500883 | Msa1269290:CDS |
| GAACCAGAATCAGTAGAAGA+TGG | 0.593438 | 8_3:-2499275 | None:intergenic |
| ACCATCCAGAGGTTAAAAGA+AGG | 0.595226 | 8_3:-2501348 | None:intergenic |
| TACAGTAGATTGACGAAAGG+AGG | 0.597491 | 8_3:-2497072 | None:intergenic |
| TTTACGATGACGGCTATGGA+TGG | 0.598888 | 8_3:+2497201 | Msa1269290:CDS |
| CTCAACCTGCTTTATGCAGT+AGG | 0.603786 | 8_3:-2499969 | None:intergenic |
| ATGGATATTGCACACGATCG+AGG | 0.603895 | 8_3:+2500546 | Msa1269290:CDS |
| TCATATATACGAGGACTCCA+TGG | 0.612699 | 8_3:-2502797 | None:intergenic |
| CTGGGGAAAAGCTCCATCAA+AGG | 0.613205 | 8_3:+2501143 | Msa1269290:CDS |
| AAGGGATATGTACCATCCAG+AGG | 0.618149 | 8_3:-2501359 | None:intergenic |
| ACTTACCTACTGCATAAAGC+AGG | 0.622001 | 8_3:+2499964 | Msa1269290:CDS |
| ACTTACAGTAGATTGACGAA+AGG | 0.623164 | 8_3:-2497075 | None:intergenic |
| CTACTGATTCTGGTTCAAGT+GGG | 0.624307 | 8_3:+2499282 | Msa1269290:CDS |
| AAAGCTCCCAAAGTTGAGTG+TGG | 0.627248 | 8_3:-2499121 | None:intergenic |
| GGCAAAGGCAAGAGTTTCGT+AGG | 0.627927 | 8_3:+2501100 | Msa1269290:CDS |
| AGTAAGAAGATCGAAAATGG+TGG | 0.641670 | 8_3:+2496972 | Msa1269290:exon |
| GCAGATTTGGAATGATGTCG+TGG | 0.642011 | 8_3:+2499930 | Msa1269290:CDS |
| GGGTGCCAAGATTCACTGGA+TGG | 0.644744 | 8_3:-2500880 | None:intergenic |
| GATTCACTGGATGGTTGACA+AGG | 0.654390 | 8_3:-2500871 | None:intergenic |
| ATAGACAGGGCGGTTACCGG+TGG | 0.655081 | 8_3:-2497394 | None:intergenic |
| CTGGAAACTCTATTGCGACA+GGG | 0.658826 | 8_3:+2502490 | Msa1269290:CDS |
| AATCGTTTATGATCATTTGG+GGG | 0.662804 | 8_3:+2499089 | Msa1269290:CDS |
| CAGATTTGGAATGATGTCGT+GGG | 0.664496 | 8_3:+2499931 | Msa1269290:CDS |
| ATAGAAGCATATGTGACGAG+TGG | 0.675409 | 8_3:-2497027 | None:intergenic |
| TAGACAGGGCGGTTACCGGT+GGG | 0.677503 | 8_3:-2497393 | None:intergenic |
| GGACCGTAGACAGTTTGACC+AGG | 0.681218 | 8_3:-2497363 | None:intergenic |
| ACACACAGACCTTATAGACA+GGG | 0.685969 | 8_3:-2497407 | None:intergenic |
| AGCTGGATACTGGAACACGA+TGG | 0.692506 | 8_3:+2500527 | Msa1269290:CDS |
| ATTCCTAGCTCATATATACG+AGG | 0.721276 | 8_3:-2502806 | None:intergenic |
| AGAATGCAGCTAATATTTCG+GGG | 0.723462 | 8_3:-2501736 | None:intergenic |
| TATATACGAGGACTCCATGG+AGG | 0.724414 | 8_3:-2502794 | None:intergenic |
| CACAGACCTTATAGACAGGG+CGG | 0.753720 | 8_3:-2497404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTATTTAAACAATAA+TGG | + | chr8_3:2497240-2497259 | Msa1269290:CDS | 10.0% |
| !! | AAATGAAAAATCAATTTAAT+CGG | - | chr8_3:2498243-2498262 | None:intergenic | 10.0% |
| !!! | TTATTTTCTGAAATAATTAC+AGG | - | chr8_3:2498120-2498139 | None:intergenic | 15.0% |
| !! | AAAAAAAATTCAAAAGTAGA+TGG | - | chr8_3:2500190-2500209 | None:intergenic | 15.0% |
| !! | ATATGAATCATATTTATATG+TGG | + | chr8_3:2500244-2500263 | Msa1269290:intron | 15.0% |
| !! | TGAAAAGAATATTAGAAATA+AGG | - | chr8_3:2500969-2500988 | None:intergenic | 15.0% |
| !!! | CAAAAATAGAATGTTTTTAA+GGG | - | chr8_3:2501380-2501399 | None:intergenic | 15.0% |
| !!! | TCAAAAATAGAATGTTTTTA+AGG | - | chr8_3:2501381-2501400 | None:intergenic | 15.0% |
| !!! | TTAGCAATAATATTTCTATA+TGG | - | chr8_3:2501533-2501552 | None:intergenic | 15.0% |
| !!! | ATATATTTGATTTTTCTACT+TGG | + | chr8_3:2501612-2501631 | Msa1269290:intron | 15.0% |
| !! | AAAGTGTATATATTACATTT+AGG | - | chr8_3:2502238-2502257 | None:intergenic | 15.0% |
| !!! | CACAATGTTTGTTTATTTTT+GGG | - | chr8_3:2496860-2496879 | None:intergenic | 20.0% |
| !!! | ACACAATGTTTGTTTATTTT+TGG | - | chr8_3:2496861-2496880 | None:intergenic | 20.0% |
| !! | TTAAACAATAATGGTTTACA+AGG | + | chr8_3:2497249-2497268 | Msa1269290:CDS | 20.0% |
| !!! | GACAAAAACCAATTTTTTTT+TGG | + | chr8_3:2497593-2497612 | Msa1269290:intron | 20.0% |
| !!! | ATTGATTTTTCATTTCATCT+TGG | + | chr8_3:2498248-2498267 | Msa1269290:intron | 20.0% |
| !!! | TATCCTTTTAAATTTCACTT+TGG | + | chr8_3:2498510-2498529 | Msa1269290:intron | 20.0% |
| !! | TCAAACAATTTCTTCTAATA+TGG | - | chr8_3:2499732-2499751 | None:intergenic | 20.0% |
| !!! | CGTTTTTTTATATGAATAAC+AGG | + | chr8_3:2499776-2499795 | Msa1269290:intron | 20.0% |
| !! | AACTACAAATAGGTATTTAA+AGG | - | chr8_3:2500085-2500104 | None:intergenic | 20.0% |
| !! | TCTTAATAGTATGAAGAAAA+TGG | + | chr8_3:2500432-2500451 | Msa1269290:intron | 20.0% |
| !! | CTTAATAGTATGAAGAAAAT+GGG | + | chr8_3:2500433-2500452 | Msa1269290:intron | 20.0% |
| !! | GAAATATTATTGCTAACTAT+AGG | + | chr8_3:2501537-2501556 | Msa1269290:intron | 20.0% |
| !! | TAAACAAAAATAGGTAAACA+TGG | - | chr8_3:2502584-2502603 | None:intergenic | 20.0% |
| ! | TGAATTGAATTGAATGAAGA+TGG | + | chr8_3:2497178-2497197 | Msa1269290:intron | 25.0% |
| !!! | TACAAGGTTTTGTTAATCTA+TGG | + | chr8_3:2497265-2497284 | Msa1269290:CDS | 25.0% |
| ! | TGAAAATAAAAGTTGTGTTG+TGG | - | chr8_3:2497631-2497650 | None:intergenic | 25.0% |
| !! | TTTTTGTCTTATACGATGTT+TGG | - | chr8_3:2497695-2497714 | None:intergenic | 25.0% |
| ! | ACTATGTGTTACGATTTAAT+TGG | + | chr8_3:2497814-2497833 | Msa1269290:intron | 25.0% |
| ! | AGAAAAGTAACAAAGAAGAT+AGG | + | chr8_3:2498048-2498067 | Msa1269290:intron | 25.0% |
| ! | AAAGAAAAGAAAATTGGCAT+AGG | + | chr8_3:2498351-2498370 | Msa1269290:intron | 25.0% |
| ! | ATAAGACTTTGTATGATCTT+AGG | + | chr8_3:2498408-2498427 | Msa1269290:intron | 25.0% |
| ! | CATCCAAAGTGAAATTTAAA+AGG | - | chr8_3:2498516-2498535 | None:intergenic | 25.0% |
| ! | TGTTCTGTGTTTATGAAAAT+TGG | + | chr8_3:2498534-2498553 | Msa1269290:intron | 25.0% |
| ! | CTTCATAGATAATGTATGAT+GGG | + | chr8_3:2498785-2498804 | Msa1269290:intron | 25.0% |
| ! | ATAAAGCCTTGAAATTCAAA+AGG | - | chr8_3:2498875-2498894 | None:intergenic | 25.0% |
| ! | CTTTATGAAGATAGGTTTAT+AGG | + | chr8_3:2498889-2498908 | Msa1269290:intron | 25.0% |
| !! | AATTTTTGCATGTATGTTTC+AGG | + | chr8_3:2499046-2499065 | Msa1269290:intron | 25.0% |
| ! | AATGATCATAAACGATTGTT+GGG | - | chr8_3:2499086-2499105 | None:intergenic | 25.0% |
| ! | AAATGATCATAAACGATTGT+TGG | - | chr8_3:2499087-2499106 | None:intergenic | 25.0% |
| ! | AACAATCGTTTATGATCATT+TGG | + | chr8_3:2499086-2499105 | Msa1269290:CDS | 25.0% |
| ! | ACAATCGTTTATGATCATTT+GGG | + | chr8_3:2499087-2499106 | Msa1269290:CDS | 25.0% |
| ! | AAATTCAATGTAAATTGCAC+AGG | - | chr8_3:2499217-2499236 | None:intergenic | 25.0% |
| ! | ACTCAAGTGTTATATTTGAT+AGG | + | chr8_3:2499241-2499260 | Msa1269290:intron | 25.0% |
| ! | CTCAAGTGTTATATTTGATA+GGG | + | chr8_3:2499242-2499261 | Msa1269290:intron | 25.0% |
| ! | TTATATTTGATAGGGTCATT+TGG | + | chr8_3:2499250-2499269 | Msa1269290:intron | 25.0% |
| !!! | ACATAATCATCGATTTTTAC+TGG | + | chr8_3:2499306-2499325 | Msa1269290:CDS | 25.0% |
| !!! | CATAATCATCGATTTTTACT+GGG | + | chr8_3:2499307-2499326 | Msa1269290:CDS | 25.0% |
| ! | TCTTATCCATTTATTTGCAT+TGG | + | chr8_3:2499381-2499400 | Msa1269290:intron | 25.0% |
| ! | CAATTTCCAATGCAAATAAA+TGG | - | chr8_3:2499390-2499409 | None:intergenic | 25.0% |
| !! | AGAAATGTTTCAACGTTTTA+TGG | + | chr8_3:2499688-2499707 | Msa1269290:intron | 25.0% |
| ! | CATATAAAAAAACGTCTCAA+GGG | - | chr8_3:2499770-2499789 | None:intergenic | 25.0% |
| ! | TCATATAAAAAAACGTCTCA+AGG | - | chr8_3:2499771-2499790 | None:intergenic | 25.0% |
| ! | GTTGAGATCTAATTTATGAT+AGG | + | chr8_3:2500220-2500239 | Msa1269290:intron | 25.0% |
| ! | ATCTTACTAGTATATGAATC+AGG | + | chr8_3:2500334-2500353 | Msa1269290:intron | 25.0% |
| ! | ACAATAGAGAATTAACCAAA+GGG | - | chr8_3:2500401-2500420 | None:intergenic | 25.0% |
| ! | AACAATAGAGAATTAACCAA+AGG | - | chr8_3:2500402-2500421 | None:intergenic | 25.0% |
| ! | TAAATGAAATCCAGTTGTTA+TGG | - | chr8_3:2500695-2500714 | None:intergenic | 25.0% |
| ! | TGGATTTCATTTATCATGTT+TGG | + | chr8_3:2500702-2500721 | Msa1269290:intron | 25.0% |
| ! | TAGAAATAAGGAAAACTTTG+CGG | - | chr8_3:2500957-2500976 | None:intergenic | 25.0% |
| !! | TTTCCCCTTTTTATGAAAAT+TGG | + | chr8_3:2501000-2501019 | Msa1269290:intron | 25.0% |
| !! | AAGCCAATTTTCATAAAAAG+GGG | - | chr8_3:2501006-2501025 | None:intergenic | 25.0% |
| !! | GAAGCCAATTTTCATAAAAA+GGG | - | chr8_3:2501007-2501026 | None:intergenic | 25.0% |
| !! | AGAAGCCAATTTTCATAAAA+AGG | - | chr8_3:2501008-2501027 | None:intergenic | 25.0% |
| ! | TAAAGATGCATAGAATATAC+TGG | + | chr8_3:2501166-2501185 | Msa1269290:intron | 25.0% |
| ! | TATATAATGCAAGTCAGATT+GGG | + | chr8_3:2501226-2501245 | Msa1269290:intron | 25.0% |
| ! | ACTAAGTTGTTGTAATGATT+GGG | + | chr8_3:2501424-2501443 | Msa1269290:intron | 25.0% |
| !! | GCAATAATATTTCTATATGG+AGG | - | chr8_3:2501530-2501549 | None:intergenic | 25.0% |
| !! | ATGTTCTCTAAGAAAATGTT+AGG | - | chr8_3:2501638-2501657 | None:intergenic | 25.0% |
| ! | GATAGAAAATAATGCTTACT+TGG | - | chr8_3:2501950-2501969 | None:intergenic | 25.0% |
| ! | TTAAAGCTTCAACAAAATCA+TGG | - | chr8_3:2502134-2502153 | None:intergenic | 25.0% |
| ! | ATATATTACATTTAGGCTGT+TGG | - | chr8_3:2502231-2502250 | None:intergenic | 25.0% |
| ! | TCATATCTATAGAAAACCAA+CGG | + | chr8_3:2502263-2502282 | Msa1269290:intron | 25.0% |
| ! | GAATTGTATATTTCAGAAAC+AGG | - | chr8_3:2502312-2502331 | None:intergenic | 25.0% |
| ! | TAACATTCGCTTACAAAATA+AGG | - | chr8_3:2502673-2502692 | None:intergenic | 25.0% |
| ! | GCGAATGTTATGATTTAAAA+TGG | + | chr8_3:2502683-2502702 | Msa1269290:three_prime_UTR | 25.0% |
| ! | AATTCTGTCAAGAAAAATGT+GGG | - | chr8_3:2502772-2502791 | None:intergenic | 25.0% |
| ACTAGTAAGAAGATCGAAAA+TGG | + | chr8_3:2496969-2496988 | Msa1269290:exon | 30.0% | |
| CAGCATAAACAGCTATAATT+TGG | - | chr8_3:2497314-2497333 | None:intergenic | 30.0% | |
| GTGAGGAACCAAAAAAAAAT+TGG | - | chr8_3:2497604-2497623 | None:intergenic | 30.0% | |
| AAAACACAGACAAACTTTGA+TGG | - | chr8_3:2497730-2497749 | None:intergenic | 30.0% | |
| AGTGTGTTTGATCTACTAAA+AGG | - | chr8_3:2497797-2497816 | None:intergenic | 30.0% | |
| ATGTGTTACGATTTAATTGG+AGG | + | chr8_3:2497817-2497836 | Msa1269290:intron | 30.0% | |
| TTTGTATTTCTTCAGGCAAA+TGG | + | chr8_3:2497940-2497959 | Msa1269290:intron | 30.0% | |
| TGCTGCATATTTAGTTACTT+TGG | + | chr8_3:2497966-2497985 | Msa1269290:CDS | 30.0% | |
| TTCTGCGCTTATTAATTGAA+AGG | + | chr8_3:2498025-2498044 | Msa1269290:intron | 30.0% | |
| ! | TTGAATGTATTGACATCTGT+CGG | + | chr8_3:2498145-2498164 | Msa1269290:intron | 30.0% |
| ATTCAATAAGTTTCAGTGCT+AGG | + | chr8_3:2498198-2498217 | Msa1269290:intron | 30.0% | |
| TTCAATAAGTTTCAGTGCTA+GGG | + | chr8_3:2498199-2498218 | Msa1269290:intron | 30.0% | |
| TCTTTGTGGGAAGAATATAA+TGG | - | chr8_3:2498336-2498355 | None:intergenic | 30.0% | |
| TCCCACAAAGAAAAGAAAAT+TGG | + | chr8_3:2498345-2498364 | Msa1269290:intron | 30.0% | |
| ! | GCCAATTTTCTTTTCTTTGT+GGG | - | chr8_3:2498349-2498368 | None:intergenic | 30.0% |
| ! | TGCCAATTTTCTTTTCTTTG+TGG | - | chr8_3:2498350-2498369 | None:intergenic | 30.0% |
| ACATAATATTGATGTCTTCC+AGG | + | chr8_3:2498384-2498403 | Msa1269290:intron | 30.0% | |
| !! | ATCATACAAAGTCTTATTCC+TGG | - | chr8_3:2498405-2498424 | None:intergenic | 30.0% |
| ! | TGATCTTAGGTTGTCATATA+TGG | + | chr8_3:2498421-2498440 | Msa1269290:intron | 30.0% |
| GTGTTTATGAAAATTGGCAT+AGG | + | chr8_3:2498540-2498559 | Msa1269290:intron | 30.0% | |
| GCTTCATAGATAATGTATGA+TGG | + | chr8_3:2498784-2498803 | Msa1269290:intron | 30.0% | |
| ! | GGTTATCCTTTTGAATTTCA+AGG | + | chr8_3:2498866-2498885 | Msa1269290:intron | 30.0% |
| ! | TTTCAAGGCTTTATGAAGAT+AGG | + | chr8_3:2498881-2498900 | Msa1269290:intron | 30.0% |
| ! | ATTTTCCTTACAAAGCAAGA+TGG | + | chr8_3:2498986-2499005 | Msa1269290:intron | 30.0% |
| CAATCGTTTATGATCATTTG+GGG | + | chr8_3:2499088-2499107 | Msa1269290:CDS | 30.0% | |
| AATCGTTTATGATCATTTGG+GGG | + | chr8_3:2499089-2499108 | Msa1269290:CDS | 30.0% | |
| ATATATTCCACACTCAACTT+TGG | + | chr8_3:2499114-2499133 | Msa1269290:CDS | 30.0% | |
| TATATTCCACACTCAACTTT+GGG | + | chr8_3:2499115-2499134 | Msa1269290:CDS | 30.0% | |
| AAGAAAGAGAATGTGAACAA+TGG | + | chr8_3:2499420-2499439 | Msa1269290:intron | 30.0% | |
| AAAATCTCTCGTCTGATTAT+TGG | + | chr8_3:2499476-2499495 | Msa1269290:intron | 30.0% | |
| ! | GAGAATTTTCCATGCATTAT+CGG | - | chr8_3:2499582-2499601 | None:intergenic | 30.0% |
| !! | ACCAATCCTTTTGTTTAAAC+TGG | + | chr8_3:2499610-2499629 | Msa1269290:intron | 30.0% |
| ACCAGTTTAAACAAAAGGAT+TGG | - | chr8_3:2499614-2499633 | None:intergenic | 30.0% | |
| GTCAAACCAGTTTAAACAAA+AGG | - | chr8_3:2499619-2499638 | None:intergenic | 30.0% | |
| GAATTTCAAAGTTCACATAG+TGG | - | chr8_3:2499661-2499680 | None:intergenic | 30.0% | |
| AAGAATGACAGAAAGTTAGA+AGG | - | chr8_3:2499848-2499867 | None:intergenic | 30.0% | |
| ! | TCAAAATATTTTCCAATGCG+TGG | - | chr8_3:2499890-2499909 | None:intergenic | 30.0% |
| AGTATCAGCAAACTACAAAT+AGG | - | chr8_3:2500095-2500114 | None:intergenic | 30.0% | |
| ! | TTTAACTTCCTTAGTTGCTT+TGG | + | chr8_3:2500267-2500286 | Msa1269290:intron | 30.0% |
| TACTAGTAAGATCATGTTCA+TGG | - | chr8_3:2500326-2500345 | None:intergenic | 30.0% | |
| TGTAAATACTACGTTAATGC+TGG | + | chr8_3:2500476-2500495 | Msa1269290:CDS | 30.0% | |
| ! | TGTATGTTACCAAGTTTTTC+TGG | + | chr8_3:2500499-2500518 | Msa1269290:CDS | 30.0% |
| ! | ATTCTGCTGATATGTTCTTT+TGG | + | chr8_3:2500620-2500639 | Msa1269290:intron | 30.0% |
| ! | AGCTGGATTTTATATTTGCT+GGG | + | chr8_3:2500802-2500821 | Msa1269290:intron | 30.0% |
| CTGGATTACTATTTGTCATT+TGG | + | chr8_3:2501185-2501204 | Msa1269290:intron | 30.0% | |
| CTATATAATGCAAGTCAGAT+TGG | + | chr8_3:2501225-2501244 | Msa1269290:intron | 30.0% | |
| CACTAAGTTGTTGTAATGAT+TGG | + | chr8_3:2501423-2501442 | Msa1269290:intron | 30.0% | |
| !! | CACATTTTAAGTCAAATGTC+TGG | - | chr8_3:2501483-2501502 | None:intergenic | 30.0% |
| AAGAATGCAGCTAATATTTC+GGG | - | chr8_3:2501740-2501759 | None:intergenic | 30.0% | |
| GAAGAATGCAGCTAATATTT+CGG | - | chr8_3:2501741-2501760 | None:intergenic | 30.0% | |
| AAATATTAGCTGCATTCTTC+TGG | + | chr8_3:2501741-2501760 | Msa1269290:CDS | 30.0% | |
| AGAAATATCACGTAGAAGTA+AGG | - | chr8_3:2501877-2501896 | None:intergenic | 30.0% | |
| ! | TTTTTGCTCGATCAAAAAGA+AGG | - | chr8_3:2501906-2501925 | None:intergenic | 30.0% |
| ! | TTCTTTTTGATCGAGCAAAA+AGG | + | chr8_3:2501905-2501924 | Msa1269290:CDS | 30.0% |
| ! | TCTTTTTGATCGAGCAAAAA+GGG | + | chr8_3:2501906-2501925 | Msa1269290:CDS | 30.0% |
| !! | TTAGTGTTGCTTATAGTTCT+TGG | + | chr8_3:2501972-2501991 | Msa1269290:intron | 30.0% |
| ! | AAAGTTTGCTTTATGAGTCA+TGG | + | chr8_3:2502061-2502080 | Msa1269290:intron | 30.0% |
| ! | ACTTTTTGCTAAAATCACAG+TGG | + | chr8_3:2502159-2502178 | Msa1269290:intron | 30.0% |
| AATTCTTTATTGCATTGCAG+TGG | - | chr8_3:2502341-2502360 | None:intergenic | 30.0% | |
| CATGAAATTTCATATTCCAC+TGG | - | chr8_3:2502407-2502426 | None:intergenic | 30.0% | |
| CAGTGGAATATGAAATTTCA+TGG | + | chr8_3:2502405-2502424 | Msa1269290:intron | 30.0% | |
| AGTCATCATCAATATATTCC+TGG | - | chr8_3:2502533-2502552 | None:intergenic | 30.0% | |
| !! | TATATTGATGATGACTTGTC+TGG | + | chr8_3:2502537-2502556 | Msa1269290:exon | 30.0% |
| CAGAAGCAGTAAACAAAAAT+AGG | - | chr8_3:2502593-2502612 | None:intergenic | 30.0% | |
| TGTGGGAGATTTCTATTTAT+GGG | - | chr8_3:2502755-2502774 | None:intergenic | 30.0% | |
| ATGTGGGAGATTTCTATTTA+TGG | - | chr8_3:2502756-2502775 | None:intergenic | 30.0% | |
| GAATTCTGTCAAGAAAAATG+TGG | - | chr8_3:2502773-2502792 | None:intergenic | 30.0% | |
| AACATTGTGTGTGTCTATCA+CGG | + | chr8_3:2496871-2496890 | Msa1269290:five_prime_UTR | 35.0% | |
| AGTAAGAAGATCGAAAATGG+TGG | + | chr8_3:2496972-2496991 | Msa1269290:exon | 35.0% | |
| ACTTACAGTAGATTGACGAA+AGG | - | chr8_3:2497078-2497097 | None:intergenic | 35.0% | |
| ATGAAGATGGTTTACGATGA+CGG | + | chr8_3:2497191-2497210 | Msa1269290:intron | 35.0% | |
| ACAGCTATAATTTGGAAAGC+TGG | - | chr8_3:2497306-2497325 | None:intergenic | 35.0% | |
| GTCGTTGTTTGTATTTCTTC+AGG | + | chr8_3:2497933-2497952 | Msa1269290:intron | 35.0% | |
| TGGTTACTTACATTGCACTT+TGG | + | chr8_3:2497986-2498005 | Msa1269290:CDS | 35.0% | |
| TTACTTACATTGCACTTTGG+CGG | + | chr8_3:2497989-2498008 | Msa1269290:CDS | 35.0% | |
| !! | TCATTGCTAGTCTTCTCAAT+TGG | + | chr8_3:2498486-2498505 | Msa1269290:intron | 35.0% |
| ! | TGATCAAAATTTTCCCAGTG+TGG | + | chr8_3:2498714-2498733 | Msa1269290:intron | 35.0% |
| ! | CATAGATAATGTATGATGGG+TGG | + | chr8_3:2498788-2498807 | Msa1269290:intron | 35.0% |
| !! | GTATGATGGGTGGATATATT+TGG | + | chr8_3:2498798-2498817 | Msa1269290:intron | 35.0% |
| ! | TCATTGCTAGTCTACTCAAT+TGG | + | chr8_3:2498845-2498864 | Msa1269290:intron | 35.0% |
| !! | TTGCATGTATGTTTCAGGTT+TGG | + | chr8_3:2499051-2499070 | Msa1269290:intron | 35.0% |
| !! | TGCATGTATGTTTCAGGTTT+GGG | + | chr8_3:2499052-2499071 | Msa1269290:intron | 35.0% |
| TTGCATCAATGATCCTCTAA+AGG | - | chr8_3:2499509-2499528 | None:intergenic | 35.0% | |
| !! | GAGGCGGTAATTTTAAAGAA+AGG | - | chr8_3:2499536-2499555 | None:intergenic | 35.0% |
| ! | TTCTTGGTTTAGAATGAGAG+AGG | - | chr8_3:2499555-2499574 | None:intergenic | 35.0% |
| TCTCTCATTCTAAACCAAGA+AGG | + | chr8_3:2499554-2499573 | Msa1269290:intron | 35.0% | |
| TCACATAGTGGCATTATGAA+CGG | - | chr8_3:2499649-2499668 | None:intergenic | 35.0% | |
| GAATTAAACTCCACATGTCT+AGG | - | chr8_3:2499802-2499821 | None:intergenic | 35.0% | |
| ! | CACCTTTTTCCCATAAATGA+CGG | + | chr8_3:2499822-2499841 | Msa1269290:intron | 35.0% |
| TAACTTTCTGTCATTCTTGC+AGG | + | chr8_3:2499850-2499869 | Msa1269290:intron | 35.0% | |
| AACTTTCTGTCATTCTTGCA+GGG | + | chr8_3:2499851-2499870 | Msa1269290:intron | 35.0% | |
| ! | GTTTTCACAAACTGCAGATT+TGG | + | chr8_3:2499917-2499936 | Msa1269290:CDS | 35.0% |
| ! | TTTTCCAACTAAATGCTGGA+TGG | - | chr8_3:2500048-2500067 | None:intergenic | 35.0% |
| ! | TGTGTTTTCCAACTAAATGC+TGG | - | chr8_3:2500052-2500071 | None:intergenic | 35.0% |
| !! | AGGTTCAAACTGTTTCTACA+AGG | - | chr8_3:2500119-2500138 | None:intergenic | 35.0% |
| TTGTAGAAACAGTTTGAACC+TGG | + | chr8_3:2500118-2500137 | Msa1269290:intron | 35.0% | |
| TGTAGAAACAGTTTGAACCT+GGG | + | chr8_3:2500119-2500138 | Msa1269290:intron | 35.0% | |
| TAGTAAGATCATGTTCATGG+AGG | - | chr8_3:2500323-2500342 | None:intergenic | 35.0% | |
| TTTGTGAAATTTCCACCCTT+TGG | + | chr8_3:2500383-2500402 | Msa1269290:intron | 35.0% | |
| ATAGAGAATTAACCAAAGGG+TGG | - | chr8_3:2500398-2500417 | None:intergenic | 35.0% | |
| ! | ATGTTACCAAGTTTTTCTGG+TGG | + | chr8_3:2500502-2500521 | Msa1269290:CDS | 35.0% |
| !! | TGTTACCAAGTTTTTCTGGT+GGG | + | chr8_3:2500503-2500522 | Msa1269290:CDS | 35.0% |
| GAACATATCAGCAGAATGAT+AGG | - | chr8_3:2500617-2500636 | None:intergenic | 35.0% | |
| TGAAATCCAGTTGTTATGGA+AGG | - | chr8_3:2500691-2500710 | None:intergenic | 35.0% | |
| AAATCCAGCTGCAAGATTTA+GGG | - | chr8_3:2500792-2500811 | None:intergenic | 35.0% | |
| AAAATCCAGCTGCAAGATTT+AGG | - | chr8_3:2500793-2500812 | None:intergenic | 35.0% | |
| ! | CAGCTGGATTTTATATTTGC+TGG | + | chr8_3:2500801-2500820 | Msa1269290:intron | 35.0% |
| !! | GCTGGATTTTATATTTGCTG+GGG | + | chr8_3:2500803-2500822 | Msa1269290:intron | 35.0% |
| !!! | GCTAGCACTCTTTATTTTAG+TGG | + | chr8_3:2501038-2501057 | Msa1269290:intron | 35.0% |
| ACATCAACTATGATTGTGAC+AGG | + | chr8_3:2501079-2501098 | Msa1269290:CDS | 35.0% | |
| TAGGACAAATGGAAAAAGCT+TGG | + | chr8_3:2501119-2501138 | Msa1269290:CDS | 35.0% | |
| AAATGGAAAAAGCTTGGTCT+GGG | + | chr8_3:2501125-2501144 | Msa1269290:CDS | 35.0% | |
| CTATGCATCTTTACCTTTGA+TGG | - | chr8_3:2501159-2501178 | None:intergenic | 35.0% | |
| !!! | AGCTTAAGCTCGCTATTTTT+TGG | + | chr8_3:2501449-2501468 | Msa1269290:intron | 35.0% |
| !!! | GCTTAAGCTCGCTATTTTTT+GGG | + | chr8_3:2501450-2501469 | Msa1269290:intron | 35.0% |
| !!! | CTTAAGCTCGCTATTTTTTG+GGG | + | chr8_3:2501451-2501470 | Msa1269290:intron | 35.0% |
| GTAGCACAGAAAAAGTGAAT+TGG | - | chr8_3:2501680-2501699 | None:intergenic | 35.0% | |
| AGAATGCAGCTAATATTTCG+GGG | - | chr8_3:2501739-2501758 | None:intergenic | 35.0% | |
| TTACGTGATTGAATAGAGCT+GGG | - | chr8_3:2501772-2501791 | None:intergenic | 35.0% | |
| !! | GATGACAAAAAGAGCATCTT+TGG | - | chr8_3:2502026-2502045 | None:intergenic | 35.0% |
| GATGATGAGTTTGACAGAAT+CGG | - | chr8_3:2502189-2502208 | None:intergenic | 35.0% | |
| ! | ACTGAACTTTTCATTACCAG+TGG | + | chr8_3:2502388-2502407 | Msa1269290:intron | 35.0% |
| TGAAAATTTCCACTTCATGC+AGG | + | chr8_3:2502456-2502475 | Msa1269290:intron | 35.0% | |
| ATTCCTGGAATGATTCTGTA+AGG | - | chr8_3:2502518-2502537 | None:intergenic | 35.0% | |
| GTTTACCATTGCATCTTAAG+TGG | - | chr8_3:2502616-2502635 | None:intergenic | 35.0% | |
| ATTCCTAGCTCATATATACG+AGG | - | chr8_3:2502809-2502828 | None:intergenic | 35.0% | |
| GAGTGGTGAATGTACTGTTT+CGG | - | chr8_3:2497013-2497032 | None:intergenic | 40.0% | |
| ! | ATAGAAGCATATGTGACGAG+TGG | - | chr8_3:2497030-2497049 | None:intergenic | 40.0% |
| TACAGTAGATTGACGAAAGG+AGG | - | chr8_3:2497075-2497094 | None:intergenic | 40.0% | |
| !! | AAAGCTGGAAGTGTTGGTTT+AGG | - | chr8_3:2497291-2497310 | None:intergenic | 40.0% |
| ! | ATTTGGAAAGCTGGAAGTGT+TGG | - | chr8_3:2497297-2497316 | None:intergenic | 40.0% |
| ACACACAGACCTTATAGACA+GGG | - | chr8_3:2497410-2497429 | None:intergenic | 40.0% | |
| AGTTGTGTTGTGGTTTAGTG+AGG | - | chr8_3:2497621-2497640 | None:intergenic | 40.0% | |
| AATTGGCATAGGAGATCTCA+CGG | + | chr8_3:2498551-2498570 | Msa1269290:intron | 40.0% | |
| ! | TTGAAGTGTCAGTGCTACAT+AGG | - | chr8_3:2498627-2498646 | None:intergenic | 40.0% |
| ! | GCACTGACACTTCAAATTGA+AGG | + | chr8_3:2498632-2498651 | Msa1269290:intron | 40.0% |
| !! | ATGAAGCATTGACACAGACA+CGG | - | chr8_3:2498771-2498790 | None:intergenic | 40.0% |
| GCAAACCATCTTGCTTTGTA+AGG | - | chr8_3:2498994-2499013 | None:intergenic | 40.0% | |
| GAACCAGAATCAGTAGAAGA+TGG | - | chr8_3:2499278-2499297 | None:intergenic | 40.0% | |
| !! | TCTACTGATTCTGGTTCAAG+TGG | + | chr8_3:2499281-2499300 | Msa1269290:CDS | 40.0% |
| !! | CTACTGATTCTGGTTCAAGT+GGG | + | chr8_3:2499282-2499301 | Msa1269290:CDS | 40.0% |
| ! | TTGGTTTAGAATGAGAGAGG+CGG | - | chr8_3:2499552-2499571 | None:intergenic | 40.0% |
| CGTCATTTATGGGAAAAAGG+TGG | - | chr8_3:2499824-2499843 | None:intergenic | 40.0% | |
| GTTAGAAGGCCGTCATTTAT+GGG | - | chr8_3:2499834-2499853 | None:intergenic | 40.0% | |
| AGTTAGAAGGCCGTCATTTA+TGG | - | chr8_3:2499835-2499854 | None:intergenic | 40.0% | |
| ! | CAGATTTGGAATGATGTCGT+GGG | + | chr8_3:2499931-2499950 | Msa1269290:CDS | 40.0% |
| ACTTACCTACTGCATAAAGC+AGG | + | chr8_3:2499964-2499983 | Msa1269290:CDS | 40.0% | |
| GTAGAAACAGTTTGAACCTG+GGG | + | chr8_3:2500120-2500139 | Msa1269290:intron | 40.0% | |
| CACTGTATCCAAAGCAACTA+AGG | - | chr8_3:2500278-2500297 | None:intergenic | 40.0% | |
| ! | CTTAGTTGCTTTGGATACAG+TGG | + | chr8_3:2500276-2500295 | Msa1269290:intron | 40.0% |
| ACCATACCTTCCATAACAAC+TGG | + | chr8_3:2500682-2500701 | Msa1269290:intron | 40.0% | |
| TCCAGTTGTTATGGAAGGTA+TGG | - | chr8_3:2500686-2500705 | None:intergenic | 40.0% | |
| GATTTAGGGACACGATAAAG+AGG | - | chr8_3:2500778-2500797 | None:intergenic | 40.0% | |
| ! | TTATATTTGCTGGGGCTGTT+TGG | + | chr8_3:2500811-2500830 | Msa1269290:CDS | 40.0% |
| ACAACAGCTCAAACAGGAAT+GGG | - | chr8_3:2500915-2500934 | None:intergenic | 40.0% | |
| AACAACAGCTCAAACAGGAA+TGG | - | chr8_3:2500916-2500935 | None:intergenic | 40.0% | |
| CACAAAACAACAGCTCAAAC+AGG | - | chr8_3:2500921-2500940 | None:intergenic | 40.0% | |
| !!! | CTGTTTGAGCTGTTGTTTTG+TGG | + | chr8_3:2500919-2500938 | Msa1269290:intron | 40.0% |
| !!! | GCACTCTTTATTTTAGTGGC+TGG | + | chr8_3:2501042-2501061 | Msa1269290:CDS | 40.0% |
| ACTATGATTGTGACAGGCAA+AGG | + | chr8_3:2501085-2501104 | Msa1269290:CDS | 40.0% | |
| CAAGAGTTTCGTAGGACAAA+TGG | + | chr8_3:2501108-2501127 | Msa1269290:CDS | 40.0% | |
| CAAATGGAAAAAGCTTGGTC+TGG | + | chr8_3:2501124-2501143 | Msa1269290:CDS | 40.0% | |
| AATGGAAAAAGCTTGGTCTG+GGG | + | chr8_3:2501126-2501145 | Msa1269290:CDS | 40.0% | |
| !! | AAGGCTTCTTTTTGTTTCCC+CGG | - | chr8_3:2501332-2501351 | None:intergenic | 40.0% |
| ! | AGAAGCCTTCTTTTAACCTC+TGG | + | chr8_3:2501343-2501362 | Msa1269290:CDS | 40.0% |
| ACCATCCAGAGGTTAAAAGA+AGG | - | chr8_3:2501351-2501370 | None:intergenic | 40.0% | |
| CTTACGTGATTGAATAGAGC+TGG | - | chr8_3:2501773-2501792 | None:intergenic | 40.0% | |
| GTTTGCTTTATGAGTCATGG+CGG | + | chr8_3:2502064-2502083 | Msa1269290:intron | 40.0% | |
| CCAAATCTGGTTGAAACAGT+AGG | - | chr8_3:2502289-2502308 | None:intergenic | 40.0% | |
| CCTACTGTTTCAACCAGATT+TGG | + | chr8_3:2502286-2502305 | Msa1269290:intron | 40.0% | |
| TTTCAGAAACAGGCCAAATC+TGG | - | chr8_3:2502302-2502321 | None:intergenic | 40.0% | |
| ATTTCCACTTCATGCAGGTA+TGG | + | chr8_3:2502461-2502480 | Msa1269290:intron | 40.0% | |
| GTACCTTACAGAATCATTCC+AGG | + | chr8_3:2502512-2502531 | Msa1269290:CDS | 40.0% | |
| ! | TTCTGCCACTTAAGATGCAA+TGG | + | chr8_3:2502608-2502627 | Msa1269290:three_prime_UTR | 40.0% |
| TCATATATACGAGGACTCCA+TGG | - | chr8_3:2502800-2502819 | None:intergenic | 40.0% | |
| AGTCCTCGTATATATGAGCT+AGG | + | chr8_3:2502803-2502822 | Msa1269290:three_prime_UTR | 40.0% | |
| ! | ATGGTTTACGATGACGGCTA+TGG | + | chr8_3:2497197-2497216 | Msa1269290:CDS | 45.0% |
| ! | TTTACGATGACGGCTATGGA+TGG | + | chr8_3:2497201-2497220 | Msa1269290:CDS | 45.0% |
| TCACTTCAGCTTCTTCTTCC+TGG | + | chr8_3:2497345-2497364 | Msa1269290:CDS | 45.0% | |
| CTTCCTGGTCAAACTGTCTA+CGG | + | chr8_3:2497360-2497379 | Msa1269290:CDS | 45.0% | |
| GACACACAGACCTTATAGAC+AGG | - | chr8_3:2497411-2497430 | None:intergenic | 45.0% | |
| CAGGGAGGGACAAAAATTTC+AGG | - | chr8_3:2497548-2497567 | None:intergenic | 45.0% | |
| ACTTTGGCGGTGAGTTCTTA+TGG | + | chr8_3:2498002-2498021 | Msa1269290:intron | 45.0% | |
| AAGTGTCAGTGCTACATAGG+AGG | - | chr8_3:2498624-2498643 | None:intergenic | 45.0% | |
| ! | CAGTGTCTATGTGTTGGTGT+CGG | + | chr8_3:2498737-2498756 | Msa1269290:intron | 45.0% |
| AAAGCTCCCAAAGTTGAGTG+TGG | - | chr8_3:2499124-2499143 | None:intergenic | 45.0% | |
| !! | GCACCATCTTCTACTGATTC+TGG | + | chr8_3:2499272-2499291 | Msa1269290:CDS | 45.0% |
| TATTGGCGTTGTGCCTTTAG+AGG | + | chr8_3:2499493-2499512 | Msa1269290:intron | 45.0% | |
| ! | ATGCATTATCGGTGCCTTCT+TGG | - | chr8_3:2499571-2499590 | None:intergenic | 45.0% |
| !! | AAGAAGGCACCGATAATGCA+TGG | + | chr8_3:2499570-2499589 | Msa1269290:intron | 45.0% |
| GAATAACAGGCCTAGACATG+TGG | + | chr8_3:2499789-2499808 | Msa1269290:intron | 45.0% | |
| GGCCGTCATTTATGGGAAAA+AGG | - | chr8_3:2499827-2499846 | None:intergenic | 45.0% | |
| TCTGTCATTCTTGCAGGGTA+TGG | + | chr8_3:2499856-2499875 | Msa1269290:intron | 45.0% | |
| ! | GCAGATTTGGAATGATGTCG+TGG | + | chr8_3:2499930-2499949 | Msa1269290:CDS | 45.0% |
| CTCAACCTGCTTTATGCAGT+AGG | - | chr8_3:2499972-2499991 | None:intergenic | 45.0% | |
| ! | TAAAGCAGGTTGAGTCTACG+AGG | + | chr8_3:2499978-2499997 | Msa1269290:intron | 45.0% |
| TGCTGGATGGCACAATCATT+AGG | - | chr8_3:2500035-2500054 | None:intergenic | 45.0% | |
| TGTGCCATCCAGCATTTAGT+TGG | + | chr8_3:2500041-2500060 | Msa1269290:intron | 45.0% | |
| CAGCTTCTATGGAGCTTGAT+TGG | - | chr8_3:2500164-2500183 | None:intergenic | 45.0% | |
| ATCAAGCTCCATAGAAGCTG+AGG | + | chr8_3:2500164-2500183 | Msa1269290:intron | 45.0% | |
| GGCAATAAGTCAGTACCAAC+TGG | - | chr8_3:2500302-2500321 | None:intergenic | 45.0% | |
| AGCTTCCCACCAGAAAAACT+TGG | - | chr8_3:2500511-2500530 | None:intergenic | 45.0% | |
| !! | AAGTTTTTCTGGTGGGAAGC+TGG | + | chr8_3:2500510-2500529 | Msa1269290:CDS | 45.0% |
| ATGGATATTGCACACGATCG+AGG | + | chr8_3:2500546-2500565 | Msa1269290:CDS | 45.0% | |
| CCAGGAGATGTATACACTGA+TGG | - | chr8_3:2500845-2500864 | None:intergenic | 45.0% | |
| CCATCAGTGTATACATCTCC+TGG | + | chr8_3:2500842-2500861 | Msa1269290:CDS | 45.0% | |
| TGGTTGACAAGGTACATTCC+AGG | - | chr8_3:2500863-2500882 | None:intergenic | 45.0% | |
| GATTCACTGGATGGTTGACA+AGG | - | chr8_3:2500874-2500893 | None:intergenic | 45.0% | |
| GTCAACCATCCAGTGAATCT+TGG | + | chr8_3:2500875-2500894 | Msa1269290:CDS | 45.0% | |
| ! | GCCTTCTTTTAACCTCTGGA+TGG | + | chr8_3:2501347-2501366 | Msa1269290:CDS | 45.0% |
| AAGGGATATGTACCATCCAG+AGG | - | chr8_3:2501362-2501381 | None:intergenic | 45.0% | |
| !!! | AAGCTCGCTATTTTTTGGGG+TGG | + | chr8_3:2501454-2501473 | Msa1269290:intron | 45.0% |
| !! | ACTTTTTCTGTGCTACCTGC+AGG | + | chr8_3:2501684-2501703 | Msa1269290:intron | 45.0% |
| AAGTAAGGCAAGAACTGCAC+GGG | - | chr8_3:2501862-2501881 | None:intergenic | 45.0% | |
| GAAGTAAGGCAAGAACTGCA+CGG | - | chr8_3:2501863-2501882 | None:intergenic | 45.0% | |
| CTTTCCATACCTGCATGAAG+TGG | - | chr8_3:2502468-2502487 | None:intergenic | 45.0% | |
| ! | CATGCAGGTATGGAAAGTAC+TGG | + | chr8_3:2502471-2502490 | Msa1269290:intron | 45.0% |
| ACTGGAAACTCTATTGCGAC+AGG | + | chr8_3:2502489-2502508 | Msa1269290:CDS | 45.0% | |
| CTGGAAACTCTATTGCGACA+GGG | + | chr8_3:2502490-2502509 | Msa1269290:CDS | 45.0% | |
| GTAAACATGGCAGCAAGTGA+AGG | - | chr8_3:2502571-2502590 | None:intergenic | 45.0% | |
| CTTGACAGAATTCTCCTCCA+TGG | + | chr8_3:2502780-2502799 | Msa1269290:three_prime_UTR | 45.0% | |
| TATATACGAGGACTCCATGG+AGG | - | chr8_3:2502797-2502816 | None:intergenic | 45.0% | |
| ! | TACGGTCCTATTTCTCCCAC+CGG | + | chr8_3:2497378-2497397 | Msa1269290:CDS | 50.0% |
| CTTATAGACAGGGCGGTTAC+CGG | - | chr8_3:2497400-2497419 | None:intergenic | 50.0% | |
| CACAGACCTTATAGACAGGG+CGG | - | chr8_3:2497407-2497426 | None:intergenic | 50.0% | |
| TTTGTCTTGTCTTGCCCCAC+AGG | - | chr8_3:2497579-2497598 | None:intergenic | 50.0% | |
| ACATCTGTCGGTGACATGTG+TGG | + | chr8_3:2498157-2498176 | Msa1269290:intron | 50.0% | |
| CATCTGTCGGTGACATGTGT+GGG | + | chr8_3:2498158-2498177 | Msa1269290:intron | 50.0% | |
| CACATAGACACTGCCACACT+GGG | - | chr8_3:2498730-2498749 | None:intergenic | 50.0% | |
| ACACATAGACACTGCCACAC+TGG | - | chr8_3:2498731-2498750 | None:intergenic | 50.0% | |
| GTGTGGCAGTGTCTATGTGT+TGG | + | chr8_3:2498731-2498750 | Msa1269290:intron | 50.0% | |
| ATGGAGCTCTATCCACGCAT+TGG | + | chr8_3:2499875-2499894 | Msa1269290:CDS | 50.0% | |
| ! | AATGATGTCGTGGGCTGTTC+TGG | + | chr8_3:2499940-2499959 | Msa1269290:CDS | 50.0% |
| ! | GATTGGTCACCTAACCACCA+AGG | - | chr8_3:2500147-2500166 | None:intergenic | 50.0% |
| GTAGATGGCCTCAGCTTCTA+TGG | - | chr8_3:2500175-2500194 | None:intergenic | 50.0% | |
| CTTTGGATACAGTGGCCAGT+TGG | + | chr8_3:2500284-2500303 | Msa1269290:intron | 50.0% | |
| AGCTGGATACTGGAACACGA+TGG | + | chr8_3:2500527-2500546 | Msa1269290:CDS | 50.0% | |
| GTGTCCCTAAATCTTGCAGC+TGG | + | chr8_3:2500785-2500804 | Msa1269290:intron | 50.0% | |
| TTTGCTGGGGCTGTTTGGTT+TGG | + | chr8_3:2500816-2500835 | Msa1269290:CDS | 50.0% | |
| ! | TTGCTGGGGCTGTTTGGTTT+GGG | + | chr8_3:2500817-2500836 | Msa1269290:CDS | 50.0% |
| ACAGGAATGGGATGGTACCT+GGG | - | chr8_3:2500903-2500922 | None:intergenic | 50.0% | |
| AACAGGAATGGGATGGTACC+TGG | - | chr8_3:2500904-2500923 | None:intergenic | 50.0% | |
| CAGCTCAAACAGGAATGGGA+TGG | - | chr8_3:2500911-2500930 | None:intergenic | 50.0% | |
| GGCAAAGGCAAGAGTTTCGT+AGG | + | chr8_3:2501100-2501119 | Msa1269290:CDS | 50.0% | |
| CTGGGGAAAAGCTCCATCAA+AGG | + | chr8_3:2501143-2501162 | Msa1269290:CDS | 50.0% | |
| GCCTCATATACCACTGCTTC+CGG | + | chr8_3:2501310-2501329 | Msa1269290:CDS | 50.0% | |
| CCTCATATACCACTGCTTCC+GGG | + | chr8_3:2501311-2501330 | Msa1269290:CDS | 50.0% | |
| CTCATATACCACTGCTTCCG+GGG | + | chr8_3:2501312-2501331 | Msa1269290:CDS | 50.0% | |
| !! | TTTTGTTTCCCCGGAAGCAG+TGG | - | chr8_3:2501323-2501342 | None:intergenic | 50.0% |
| ! | TTTTCTGTGCTACCTGCAGG+TGG | + | chr8_3:2501687-2501706 | Msa1269290:intron | 50.0% |
| TTTCTGTGCTACCTGCAGGT+GGG | + | chr8_3:2501688-2501707 | Msa1269290:intron | 50.0% | |
| ATGGCGGTGCATGTTTGGAT+CGG | + | chr8_3:2502080-2502099 | Msa1269290:intron | 50.0% | |
| TGGTTGAAACAGTAGGCCGT+TGG | - | chr8_3:2502282-2502301 | None:intergenic | 50.0% | |
| CATGGCAGCAAGTGAAGGAT+AGG | - | chr8_3:2502566-2502585 | None:intergenic | 50.0% | |
| GGACCGTAGACAGTTTGACC+AGG | - | chr8_3:2497366-2497385 | None:intergenic | 55.0% | |
| CGGTTACCGGTGGGAGAAAT+AGG | - | chr8_3:2497387-2497406 | None:intergenic | 55.0% | |
| CGGTAACCGCCCTGTCTATA+AGG | + | chr8_3:2497398-2497417 | Msa1269290:CDS | 55.0% | |
| CAGTTTGAACCTGGGGACCT+TGG | + | chr8_3:2500127-2500146 | Msa1269290:intron | 55.0% | |
| TTTGAACCTGGGGACCTTGG+TGG | + | chr8_3:2500130-2500149 | Msa1269290:intron | 55.0% | |
| TCTGGTGGGAAGCTGGATAC+TGG | + | chr8_3:2500517-2500536 | Msa1269290:CDS | 55.0% | |
| GGGTGCCAAGATTCACTGGA+TGG | - | chr8_3:2500883-2500902 | None:intergenic | 55.0% | |
| TCCAGTGAATCTTGGCACCC+AGG | + | chr8_3:2500883-2500902 | Msa1269290:CDS | 55.0% | |
| ACCTGGGTGCCAAGATTCAC+TGG | - | chr8_3:2500887-2500906 | None:intergenic | 55.0% | |
| CCCGGAAGCAGTGGTATATG+AGG | - | chr8_3:2501314-2501333 | None:intergenic | 55.0% | |
| TTCTGTGCTACCTGCAGGTG+GGG | + | chr8_3:2501689-2501708 | Msa1269290:intron | 55.0% | |
| GAGTCATGGCGGTGCATGTT+TGG | + | chr8_3:2502075-2502094 | Msa1269290:intron | 55.0% | |
| TAGACAGGGCGGTTACCGGT+GGG | - | chr8_3:2497396-2497415 | None:intergenic | 60.0% | |
| ATAGACAGGGCGGTTACCGG+TGG | - | chr8_3:2497397-2497416 | None:intergenic | 60.0% | |
| TTGTCTTGCCCCACAGGCAC+AGG | - | chr8_3:2497573-2497592 | None:intergenic | 60.0% | |
| CGGTGACATGTGTGGGACAC+TGG | + | chr8_3:2498165-2498184 | Msa1269290:intron | 60.0% | |
| ! | ACCTGGGGACCTTGGTGGTT+AGG | + | chr8_3:2500135-2500154 | Msa1269290:intron | 60.0% |
| ACCTAACCACCAAGGTCCCC+AGG | - | chr8_3:2500139-2500158 | None:intergenic | 60.0% | |
| ACGAGCTAATCCCCACCTGC+AGG | - | chr8_3:2501702-2501721 | None:intergenic | 60.0% | |
| CACAGGCACAGGCACAGGGA+GGG | - | chr8_3:2497562-2497581 | None:intergenic | 65.0% | |
| CTCCCTGTGCCTGTGCCTGT+GGG | + | chr8_3:2497561-2497580 | Msa1269290:intron | 65.0% | |
| TCCCTGTGCCTGTGCCTGTG+GGG | + | chr8_3:2497562-2497581 | Msa1269290:intron | 65.0% | |
| CCACAGGCACAGGCACAGGG+AGG | - | chr8_3:2497563-2497582 | None:intergenic | 70.0% | |
| CCTCCCTGTGCCTGTGCCTG+TGG | + | chr8_3:2497560-2497579 | Msa1269290:intron | 70.0% | |
| GCCCCACAGGCACAGGCACA+GGG | - | chr8_3:2497566-2497585 | None:intergenic | 70.0% | |
| TGCCCCACAGGCACAGGCAC+AGG | - | chr8_3:2497567-2497586 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 2496843 | 2502832 | 2496843 | ID=Msa1269290;Name=Msa1269290 |
| chr8_3 | mRNA | 2496843 | 2502832 | 2496843 | ID=Msa1269290-mRNA-1;Parent=Msa1269290;Name=Msa1269290-mRNA-1;_AED=0.14;_eAED=0.14;_QI=145|1|1|1|1|1|13|288|438 |
| chr8_3 | exon | 2496843 | 2497091 | 2496843 | ID=Msa1269290-mRNA-1:exon:781;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2497197 | 2497419 | 2497197 | ID=Msa1269290-mRNA-1:exon:782;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2497955 | 2498010 | 2497955 | ID=Msa1269290-mRNA-1:exon:783;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2499068 | 2499170 | 2499068 | ID=Msa1269290-mRNA-1:exon:784;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2499263 | 2499328 | 2499263 | ID=Msa1269290-mRNA-1:exon:785;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2499872 | 2499985 | 2499872 | ID=Msa1269290-mRNA-1:exon:786;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2500441 | 2500567 | 2500441 | ID=Msa1269290-mRNA-1:exon:787;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2500804 | 2500904 | 2500804 | ID=Msa1269290-mRNA-1:exon:788;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2501039 | 2501164 | 2501039 | ID=Msa1269290-mRNA-1:exon:789;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2501304 | 2501368 | 2501304 | ID=Msa1269290-mRNA-1:exon:790;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2501706 | 2501787 | 2501706 | ID=Msa1269290-mRNA-1:exon:791;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2501868 | 2501950 | 2501868 | ID=Msa1269290-mRNA-1:exon:792;Parent=Msa1269290-mRNA-1 |
| chr8_3 | exon | 2502478 | 2502832 | 2502478 | ID=Msa1269290-mRNA-1:exon:793;Parent=Msa1269290-mRNA-1 |
| chr8_3 | five_prime_UTR | 2496843 | 2496987 | 2496843 | ID=Msa1269290-mRNA-1:five_prime_utr;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2496988 | 2497091 | 2496988 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2497197 | 2497419 | 2497197 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2497955 | 2498010 | 2497955 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2499068 | 2499170 | 2499068 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2499263 | 2499328 | 2499263 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2499872 | 2499985 | 2499872 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2500441 | 2500567 | 2500441 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2500804 | 2500904 | 2500804 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2501039 | 2501164 | 2501039 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2501304 | 2501368 | 2501304 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2501706 | 2501787 | 2501706 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2501868 | 2501950 | 2501868 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | CDS | 2502478 | 2502544 | 2502478 | ID=Msa1269290-mRNA-1:cds;Parent=Msa1269290-mRNA-1 |
| chr8_3 | three_prime_UTR | 2502545 | 2502832 | 2502545 | ID=Msa1269290-mRNA-1:three_prime_utr;Parent=Msa1269290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
