AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091030 MtrunA17_Chr7g0214101 99.723 361 1 0 1 361 1 361 0.0 737
Msa1091030 MtrunA17_Chr8g0376411 39.665 358 205 2 2 352 51 404 1.51e-88 272
Msa1091030 MtrunA17_Chr3g0116801 41.104 326 188 1 27 352 82 403 2.74e-88 271
Msa1091030 MtrunA17_Chr4g0009631 34.925 335 202 6 23 348 33 360 6.29e-64 207
Msa1091030 MtrunA17_Chr7g0216531 75.000 100 16 2 158 248 12 111 3.46e-41 140
Msa1091030 MtrunA17_Chr7g0216531 57.143 56 24 0 84 139 2 57 2.87e-12 62.8
Msa1091030 MtrunA17_Chr7g0216541 95.122 41 2 0 160 200 6 46 1.46e-21 86.7
Msa1091030 MtrunA17_Chr3g0138171 27.468 233 142 8 66 290 421 634 3.01e-11 64.7
Msa1091030 MtrunA17_Chr8g0367181 26.587 252 167 8 69 317 427 663 3.94e-11 64.3
Msa1091030 MtrunA17_Chr8g0367201 26.587 252 167 8 69 317 427 663 4.00e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091030 AT5G50850.1 86.188 362 42 2 1 354 1 362 0.0 639
Msa1091030 AT1G30120.1 40.456 351 202 2 5 352 60 406 2.23e-90 277
Msa1091030 AT2G34590.1 42.042 333 185 2 22 352 80 406 2.05e-89 275
Msa1091030 AT1G55510.1 36.337 344 210 5 8 348 10 347 6.63e-70 223
Msa1091030 AT3G13450.1 35.224 335 210 4 15 348 25 353 1.64e-68 219
Msa1091030 AT4G15560.1 24.727 275 187 7 19 290 390 647 3.40e-12 68.2
Msa1091030 AT3G21500.3 26.549 226 151 6 68 290 392 605 3.19e-11 65.1
Msa1091030 AT3G21500.1 26.549 226 151 6 68 290 391 604 3.68e-11 65.1
Msa1091030 AT3G21500.2 26.549 226 151 6 68 290 392 605 4.14e-11 64.7

Find 129 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAAAGGTTATTAATTTA+AGG 0.162693 7_3:+6150794 Msa1091030:intron
TTTATAATTCCCAGCATATC+TGG 0.227146 7_3:+6151414 Msa1091030:three_prime_UTR
TCATGTCTTGGTTAGTTCTT+TGG 0.228149 7_3:+6151227 Msa1091030:three_prime_UTR
AATATGCAGGCTGGGTTTAC+TGG 0.232671 7_3:+6147920 Msa1091030:intron
ATGCCCTGGGTTGAAAGTTT+TGG 0.247026 7_3:+6149944 Msa1091030:CDS
AGAACTAGATCGATTAATTT+AGG 0.262380 7_3:-6151196 None:intergenic
GTTTACTTAAAGCTGCTATA+AGG 0.289090 7_3:+6149994 Msa1091030:CDS
TCTTGGTATGGCTCATGCCC+TGG 0.309803 7_3:+6149930 Msa1091030:CDS
TCACCCATCAAGAAGACTTT+AGG 0.312229 7_3:-6144401 None:intergenic
AAATGTGTAAGATAATAATT+TGG 0.313754 7_3:-6143625 None:intergenic
TTAGATTTCCAAGGGACTAT+TGG 0.314457 7_3:+6146278 Msa1091030:intron
AAGTTGGCCTTTGCAGTTTC+CGG 0.316568 7_3:-6151579 None:intergenic
GGAGTTGGTGCTGCTTACTA+TGG 0.330288 7_3:+6147947 Msa1091030:CDS
CATGCCTTATGCAGCAAATC+TGG 0.332687 7_3:+6150999 Msa1091030:CDS
TCAAGAACTTCGGCAGAAAC+AGG 0.334442 7_3:-6150182 None:intergenic
CAGAAAAGAATAATGAATTC+TGG 0.338933 7_3:+6143707 Msa1091030:five_prime_UTR
GAAGACTGAAAATTAAATTC+TGG 0.349384 7_3:+6151665 Msa1091030:three_prime_UTR
AATGGTTGGCTTTGCTCTAA+AGG 0.349744 7_3:+6150389 Msa1091030:CDS
TCATTGATTCTGTCAGGCTT+TGG 0.355325 7_3:+6151320 Msa1091030:three_prime_UTR
TCAAGGAAAACTACAGGATC+AGG 0.356678 7_3:-6150020 None:intergenic
CTTTCCAGATTTGCTGCATA+AGG 0.357769 7_3:-6151003 None:intergenic
CAGGCTGGGTTTACTGGGAT+TGG 0.358479 7_3:+6147926 Msa1091030:intron
TAATTTGTTTGCATTGCGTT+TGG 0.365019 7_3:+6151688 Msa1091030:three_prime_UTR
TCCGATGGGAAGGCAGAAAC+TGG 0.372273 7_3:-6150207 None:intergenic
TCTCTCTTCTTCCGCTAAAC+AGG 0.373627 7_3:+6144242 Msa1091030:CDS
AATGTACCTATTGTATTTAG+AGG 0.374366 7_3:+6149706 Msa1091030:CDS
GCACCGGTGGAGAGAATTGC+CGG 0.381050 7_3:+6150964 Msa1091030:CDS
GGGTTTACTGGGATTGGAGT+TGG 0.388394 7_3:+6147932 Msa1091030:CDS
AAGGAATCAATCAAGATGTT+AGG 0.392916 7_3:+6144078 Msa1091030:exon
CGAGCATCTTCAGATGAATA+TGG 0.394225 7_3:-6149969 None:intergenic
TAAGATCAAATCGACGTGAT+AGG 0.407286 7_3:-6151810 None:intergenic
TGCAGCAAATCTGGAAAGAT+TGG 0.409248 7_3:+6151008 Msa1091030:CDS
TTATGCAGTGTTATGCATCT+TGG 0.410920 7_3:+6149913 Msa1091030:intron
AATGGTGCTGCTGCTGGTGT+TGG 0.415359 7_3:+6149733 Msa1091030:CDS
AATTTGTTTGCATTGCGTTT+GGG 0.423865 7_3:+6151689 Msa1091030:three_prime_UTR
TCTGTCATCGAGGAGAGTTT+TGG 0.424908 7_3:+6150931 Msa1091030:CDS
TTTCCTGACAGAAGCATTGA+TGG 0.431540 7_3:-6150842 None:intergenic
AAATCAAATTACATGTCTGC+TGG 0.434500 7_3:+6149676 Msa1091030:CDS
TTTACTTAAAGCTGCTATAA+GGG 0.435542 7_3:+6149995 Msa1091030:CDS
TCAGAGTTGGTGAGTATCAA+TGG 0.451609 7_3:-6143794 None:intergenic
GAACATCCTCCCAGATATGC+TGG 0.451781 7_3:-6151424 None:intergenic
TTGGGTCCTCTAAATACAAT+AGG 0.453035 7_3:-6149712 None:intergenic
CGATCCTAAAGTCTTCTTGA+TGG 0.454138 7_3:+6144397 Msa1091030:CDS
TCTCAGAAGCAGGCTTATAC+CGG 0.458262 7_3:-6151734 None:intergenic
GGACCCAATGGTGCTGCTGC+TGG 0.458395 7_3:+6149727 Msa1091030:CDS
TTCAACTGTCACCAGTCTGT+TGG 0.461416 7_3:-6150866 None:intergenic
CTTGGTATGGCTCATGCCCT+GGG 0.468165 7_3:+6149931 Msa1091030:CDS
TTGAATTGTGGCTGTTATCC+CGG 0.472385 7_3:+6151715 Msa1091030:three_prime_UTR
AGGTTGTGGTGGAAATTTGA+GGG 0.475922 7_3:-6151277 None:intergenic
AATGTCATAAACTCCACAAC+AGG 0.479865 7_3:-6147977 None:intergenic
GAAAGTGTGAAAAGGCAGAT+TGG 0.484065 7_3:+6151833 Msa1091030:three_prime_UTR
AAGGGACTATTGGAGAAGTA+TGG 0.485928 7_3:+6146288 Msa1091030:CDS
ATATGCAGGCTGGGTTTACT+GGG 0.487916 7_3:+6147921 Msa1091030:intron
CAGATTTGCTGCATAAGGCA+TGG 0.501282 7_3:-6150998 None:intergenic
GAGATGTCTGAATGCGGAAA+AGG 0.501518 7_3:-6144223 None:intergenic
GACATTTAACTTCTCCATGC+AGG 0.502562 7_3:+6147994 Msa1091030:CDS
CAGTGTTATGCATCTTGGTA+TGG 0.510583 7_3:+6149918 Msa1091030:intron
ACACCAGCAGCAGCACCATT+GGG 0.513248 7_3:-6149730 None:intergenic
GCCCCGGCAATTCTCTCCAC+CGG 0.513647 7_3:-6150967 None:intergenic
CCACCATCAATGCTTCTGTC+AGG 0.514146 7_3:+6150839 Msa1091030:CDS
ATGCCACAGATCTGTGCCTA+TGG 0.514735 7_3:+6151164 Msa1091030:CDS
CTTAACAGATTGAGAGAGAA+GGG 0.517313 7_3:+6150337 Msa1091030:intron
TGATCTTAGAAAGTGTGAAA+AGG 0.521086 7_3:+6151825 Msa1091030:three_prime_UTR
ATTTAGGCAGTTGCAGCCAT+AGG 0.522619 7_3:-6151180 None:intergenic
TTATAATTCCCAGCATATCT+GGG 0.527240 7_3:+6151415 Msa1091030:three_prime_UTR
AACACCAGCAGCAGCACCAT+TGG 0.529263 7_3:-6149731 None:intergenic
TCCTTCAATTTAGATTTCCA+AGG 0.535088 7_3:+6146269 Msa1091030:intron
GGAGTGTCGAGAACCCTCTC+AGG 0.535813 7_3:-6146312 None:intergenic
CAAGATATATTTAACTGTGT+GGG 0.539303 7_3:+6151630 Msa1091030:three_prime_UTR
AGATTTGCTGCATAAGGCAT+GGG 0.544500 7_3:-6150997 None:intergenic
ATACTTCTCCAATAGTCCCT+TGG 0.545557 7_3:-6146286 None:intergenic
TCCAGTTTCTGCCTTCCCAT+CGG 0.546005 7_3:+6150206 Msa1091030:CDS
GGGTTTCCTCAGCATGGTGT+TGG 0.548315 7_3:+6150892 Msa1091030:CDS
TTATAGGTTGGAGAATATCA+AGG 0.548317 7_3:+6146143 Msa1091030:intron
AGAATATCAAGGTGCATACA+AGG 0.548665 7_3:+6146154 Msa1091030:CDS
GGAAAGATTGGCTGTCCCAC+AGG 0.549518 7_3:+6151020 Msa1091030:CDS
GATCCTAAAGTCTTCTTGAT+GGG 0.550617 7_3:+6144398 Msa1091030:CDS
CAACAAACAAACCTGTTTAG+CGG 0.555702 7_3:-6144253 None:intergenic
AGACTGGTGACAGTTGAAGA+AGG 0.558832 7_3:+6150871 Msa1091030:CDS
GTAGAGGAATACGAATACTT+AGG 0.564840 7_3:-6143744 None:intergenic
ACAAGATATATTTAACTGTG+TGG 0.565114 7_3:+6151629 Msa1091030:three_prime_UTR
GCTTAACAGATTGAGAGAGA+AGG 0.566225 7_3:+6150336 Msa1091030:intron
AAAAGGATGCACTAAAGTAT+GGG 0.566640 7_3:-6151759 None:intergenic
CCTTCAATTTAGATTTCCAA+GGG 0.567285 7_3:+6146270 Msa1091030:intron
AATCAAATTACATGTCTGCT+GGG 0.569255 7_3:+6149677 Msa1091030:CDS
GAGGTTGTGGTGGAAATTTG+AGG 0.570350 7_3:-6151278 None:intergenic
AGTCTTCTTGATGGGTGAAG+AGG 0.572562 7_3:+6144406 Msa1091030:CDS
CTATGGTCTAAAGCCTGTTG+TGG 0.572678 7_3:+6147964 Msa1091030:CDS
GGAACGAAAAGTTTCAGAGT+TGG 0.575482 7_3:-6143807 None:intergenic
AGTATGGGTATCTCAGAAGC+AGG 0.580296 7_3:-6151744 None:intergenic
CTCAGAAGCAGGCTTATACC+GGG 0.584510 7_3:-6151733 None:intergenic
AACATCCTCCCAGATATGCT+GGG 0.589448 7_3:-6151423 None:intergenic
CAAGAACTTCGGCAGAAACA+GGG 0.590845 7_3:-6150181 None:intergenic
GAAACTGGAATCAAGAACTT+CGG 0.593707 7_3:-6150192 None:intergenic
GCGTTTGGGACTTTGAATTG+TGG 0.594726 7_3:+6151703 Msa1091030:three_prime_UTR
GTTAGGTGTTATAAGAAACA+AGG 0.596856 7_3:+6144095 Msa1091030:CDS
CCTGACAGAAGCATTGATGG+TGG 0.602274 7_3:-6150839 None:intergenic
GTGCCAAAACTTTCAACCCA+GGG 0.603446 7_3:-6149947 None:intergenic
CAAGGAAAACTACAGGATCA+GGG 0.604349 7_3:-6150019 None:intergenic
GACTGGTGACAGTTGAAGAA+GGG 0.606152 7_3:+6150872 Msa1091030:CDS
GAGATAAACACTAACCTGCA+TGG 0.607390 7_3:-6148008 None:intergenic
TGTCAGGAAAACCAACAGAC+TGG 0.614276 7_3:+6150855 Msa1091030:CDS
CAGCCATAGGCACAGATCTG+TGG 0.618473 7_3:-6151167 None:intergenic
TAGCATACCGGAAACTGCAA+AGG 0.619213 7_3:+6151572 Msa1091030:three_prime_UTR
AGGCATGGGAACATCAGCCC+CGG 0.619316 7_3:-6150983 None:intergenic
GGAGAAGTATGGTCCTGAGA+GGG 0.619724 7_3:+6146299 Msa1091030:CDS
ATTGTATTTAGAGGACCCAA+TGG 0.620504 7_3:+6149715 Msa1091030:CDS
GAAGAAGGGTTTCCTCAGCA+TGG 0.620750 7_3:+6150886 Msa1091030:CDS
ACTCAAAACAGCAAGCAAGT+TGG 0.621959 7_3:-6151595 None:intergenic
GGTGCCAAAACTTTCAACCC+AGG 0.622618 7_3:-6149948 None:intergenic
CATCAAGAAGACTTTAGGAT+CGG 0.623232 7_3:-6144396 None:intergenic
CCTTCCCATCGGAAAAGCAA+AGG 0.627357 7_3:+6150217 Msa1091030:CDS
GCTGAGACACTAGCAAAGGA+AGG 0.630656 7_3:+6150672 Msa1091030:CDS
GGCTGCTGAGACACTAGCAA+AGG 0.630698 7_3:+6150668 Msa1091030:intron
TTGATGGTGGCTCGATCAAG+CGG 0.636023 7_3:-6150826 None:intergenic
TGGTGGCTCGATCAAGCGGT+CGG 0.637314 7_3:-6150822 None:intergenic
CAAGAAGACTTTAGGATCGG+CGG 0.641433 7_3:-6144393 None:intergenic
TGGCTATCTTGATGCACCGG+TGG 0.641507 7_3:+6150951 Msa1091030:CDS
ACCGGTGGAGAGAATTGCCG+GGG 0.643645 7_3:+6150966 Msa1091030:CDS
TATTCATCTGAAGATGCTCG+TGG 0.654209 7_3:+6149972 Msa1091030:CDS
AAAGGAAGGAATCAGTGCTG+AGG 0.656553 7_3:+6150686 Msa1091030:CDS
TGGAGAAGTATGGTCCTGAG+AGG 0.669482 7_3:+6146298 Msa1091030:CDS
TGTCTGAATGCGGAAAAGGA+AGG 0.671745 7_3:-6144219 None:intergenic
TGATAACAATGACACAAGAG+AGG 0.681703 7_3:+6151464 Msa1091030:three_prime_UTR
TCAGCGCCAACACCATGCTG+AGG 0.686283 7_3:-6150898 None:intergenic
AGAAGAGAGATGTCTGAATG+CGG 0.692625 7_3:-6144229 None:intergenic
TAATTCCCAGCATATCTGGG+AGG 0.718916 7_3:+6151418 Msa1091030:three_prime_UTR
AATCTGTGCATCTGTCATCG+AGG 0.746298 7_3:+6150921 Msa1091030:CDS
TCTCGACACTCCCATCACTG+AGG 0.757157 7_3:+6146323 Msa1091030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATATTTA+TGG - chr7_3:6144147-6144166 None:intergenic 0.0%
!! AAAAAAATAGCAAAAATATT+CGG + chr7_3:6143664-6143683 Msa1091030:five_prime_UTR 10.0%
!!! AATATTTAGAATTTTTGTTA+TGG + chr7_3:6145087-6145106 Msa1091030:intron 10.0%
!!! AAAAGATTTTATGAATTTTA+AGG + chr7_3:6146972-6146991 Msa1091030:intron 10.0%
!!! TTTAAAGAATTTAAAATTCT+TGG + chr7_3:6147583-6147602 Msa1091030:intron 10.0%
!! AAATGTGTAAGATAATAATT+TGG - chr7_3:6143628-6143647 None:intergenic 15.0%
!!! TTTTTTTCAATTAAGATTAG+AGG + chr7_3:6144727-6144746 Msa1091030:intron 15.0%
!!! TTTTTTCAATTAAGATTAGA+GGG + chr7_3:6144728-6144747 Msa1091030:intron 15.0%
!!! GTTATTACAATATTTTAGTT+AGG - chr7_3:6145385-6145404 None:intergenic 15.0%
!! TATGTTCATTTCAATATAAT+TGG + chr7_3:6145653-6145672 Msa1091030:intron 15.0%
!!! TCATTTTCTAATGTTTATTT+TGG + chr7_3:6146110-6146129 Msa1091030:intron 15.0%
!! TATAAAAATGTAAACATGAA+AGG - chr7_3:6146434-6146453 None:intergenic 15.0%
!!! AATTTGTTCATTTTATTAGA+TGG - chr7_3:6146542-6146561 None:intergenic 15.0%
!!! TTTACATCATAAGATTTTAA+AGG + chr7_3:6146926-6146945 Msa1091030:intron 15.0%
!!! TAAGATTTTAAAGGATTTTA+TGG + chr7_3:6146935-6146954 Msa1091030:intron 15.0%
!!! TTTAATAAATTAGATTTTGC+TGG - chr7_3:6147333-6147352 None:intergenic 15.0%
!!! TGTTTTAAATTTTGATATTC+AGG + chr7_3:6149287-6149306 Msa1091030:intron 15.0%
!!! TTATATATTTGAAGTAAAGT+CGG + chr7_3:6150579-6150598 Msa1091030:intron 15.0%
!!! AACTTTTTTTTACTTTGTTT+AGG + chr7_3:6150647-6150666 Msa1091030:intron 15.0%
!!! ATTATTTTTGGTAACATAAA+GGG - chr7_3:6151256-6151275 None:intergenic 15.0%
!!! AATTATTTTTGGTAACATAA+AGG - chr7_3:6151257-6151276 None:intergenic 15.0%
!!! TTTTTCAATTAAGATTAGAG+GGG + chr7_3:6144729-6144748 Msa1091030:intron 20.0%
!! TAAGCTATAAGCTAAAAAAT+GGG + chr7_3:6144899-6144918 Msa1091030:intron 20.0%
!! AACAAAAAATCTGAAAATGT+TGG - chr7_3:6145308-6145327 None:intergenic 20.0%
!! TATTATATATGTCGGAATAT+AGG - chr7_3:6145616-6145635 None:intergenic 20.0%
!!! TTTTGGTTGTATTTGATTAT+AGG + chr7_3:6146127-6146146 Msa1091030:intron 20.0%
!! AAATGAACAAATTCAAACTT+TGG + chr7_3:6146549-6146568 Msa1091030:intron 20.0%
!!! GTATTGGATTAAGATTTTAA+AGG + chr7_3:6146797-6146816 Msa1091030:intron 20.0%
!!! TCAGATTTAAAAGATTTTGT+AGG + chr7_3:6146842-6146861 Msa1091030:intron 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG + chr7_3:6146902-6146921 Msa1091030:intron 20.0%
!!! TTTTTATGATAGATAAAGAG+AGG + chr7_3:6147067-6147086 Msa1091030:intron 20.0%
!!! TTTTATGATAGATAAAGAGA+GGG + chr7_3:6147068-6147087 Msa1091030:intron 20.0%
!! TTAATTATGAAAAAGTCTTG+TGG - chr7_3:6147512-6147531 None:intergenic 20.0%
!! AATTCCTGGTAAAAAAAAAA+AGG + chr7_3:6147842-6147861 Msa1091030:intron 20.0%
!!! AAATCCTTTTTTTTTTTACC+AGG - chr7_3:6147849-6147868 None:intergenic 20.0%
!! ATAATGTTCATTAAATATGC+AGG + chr7_3:6147907-6147926 Msa1091030:intron 20.0%
!!! TGTGTTAATTTTACATCTTT+TGG + chr7_3:6148067-6148086 Msa1091030:intron 20.0%
!! TGTATAATCATCATAAATTC+AGG + chr7_3:6148499-6148518 Msa1091030:intron 20.0%
!! GCAACAATAAAATTAAACAA+TGG + chr7_3:6148770-6148789 Msa1091030:intron 20.0%
!! TAAAACAAATAGAATTGACA+AGG - chr7_3:6149274-6149293 None:intergenic 20.0%
!!! ATTGATAAAAATCGCTTTTA+GGG - chr7_3:6149409-6149428 None:intergenic 20.0%
!! TAAAATTAATTGTGTGAAGT+CGG + chr7_3:6149500-6149519 Msa1091030:intron 20.0%
!! AGATGACATAATGATAAAAT+GGG - chr7_3:6149611-6149630 None:intergenic 20.0%
!! AAGATGACATAATGATAAAA+TGG - chr7_3:6149612-6149631 None:intergenic 20.0%
!!! AAAAGAGGACTATAATTTTT+TGG + chr7_3:6150545-6150564 Msa1091030:intron 20.0%
!! CTTAAATTAATAACCTTTGT+GGG - chr7_3:6150796-6150815 None:intergenic 20.0%
!! TTTCTTAAATATCACTTCTA+AGG + chr7_3:6151048-6151067 Msa1091030:intron 20.0%
!!! AAATTTGAGGGAATTATTTT+TGG - chr7_3:6151268-6151287 None:intergenic 20.0%
! CAGAAAAGAATAATGAATTC+TGG + chr7_3:6143707-6143726 Msa1091030:five_prime_UTR 25.0%
! TGAAAAAAAAAACGAGAGAT+CGG - chr7_3:6143899-6143918 None:intergenic 25.0%
!! TGTTGAGATTTTTCTTTCTT+AGG + chr7_3:6144008-6144027 Msa1091030:intron 25.0%
!! ATCATTTTCAGAATCTTCTT+CGG + chr7_3:6144196-6144215 Msa1091030:intron 25.0%
! ATAAGTTATATCAGCCTTTA+CGG - chr7_3:6144583-6144602 None:intergenic 25.0%
!! ATTTTACCAAACACTACAAA+GGG - chr7_3:6144643-6144662 None:intergenic 25.0%
!! AATTTTACCAAACACTACAA+AGG - chr7_3:6144644-6144663 None:intergenic 25.0%
! GTAGTGTTTGGTAAAATTAA+CGG + chr7_3:6144646-6144665 Msa1091030:intron 25.0%
!!! CATTTTTTAGCTTATAGCTT+AGG - chr7_3:6144900-6144919 None:intergenic 25.0%
! CTAAGCTATAAGCTAAAAAA+TGG + chr7_3:6144898-6144917 Msa1091030:intron 25.0%
!! TGTTATGGTAATTTTGCAAA+TGG + chr7_3:6145102-6145121 Msa1091030:intron 25.0%
! TAATGTAACACAAAAGTCAA+AGG - chr7_3:6145244-6145263 None:intergenic 25.0%
!!! CAGTTAGTTTTACGAAAATA+GGG - chr7_3:6145344-6145363 None:intergenic 25.0%
!!! TCAGTTAGTTTTACGAAAAT+AGG - chr7_3:6145345-6145364 None:intergenic 25.0%
!! AGATTTTTCCTAATAGTAGT+AGG + chr7_3:6145405-6145424 Msa1091030:intron 25.0%
! TTCCGACATATATAATATGA+CGG + chr7_3:6145619-6145638 Msa1091030:intron 25.0%
!!! ATATGACCATTGACTTAATT+TGG + chr7_3:6145882-6145901 Msa1091030:intron 25.0%
! AATTCATGCATGTCTTTATA+CGG - chr7_3:6146085-6146104 None:intergenic 25.0%
! AAAATGTAAACATGAAAGGA+AGG - chr7_3:6146430-6146449 None:intergenic 25.0%
! CGAAAAATGTAACAAAAAGT+GGG - chr7_3:6146739-6146758 None:intergenic 25.0%
!!! CCACTTTTTGTTACATTTTT+CGG + chr7_3:6146737-6146756 Msa1091030:intron 25.0%
!! GTTAGTTTATTTCCATCTTA+GGG + chr7_3:6146771-6146790 Msa1091030:intron 25.0%
! TTAGTTTATTTCCATCTTAG+GGG + chr7_3:6146772-6146791 Msa1091030:intron 25.0%
!!! CATGATTTTAAAAGACTATC+AGG + chr7_3:6146879-6146898 Msa1091030:intron 25.0%
! TTTATGATAGATAAAGAGAG+GGG + chr7_3:6147069-6147088 Msa1091030:intron 25.0%
! ATGAAGACATAAGATTTCTT+GGG - chr7_3:6147264-6147283 None:intergenic 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG - chr7_3:6147387-6147406 None:intergenic 25.0%
! GCAATTTAAAAAAAGTCTTG+TGG - chr7_3:6147470-6147489 None:intergenic 25.0%
! AGAAATTCACTAATAATTCC+TGG + chr7_3:6147828-6147847 Msa1091030:intron 25.0%
!!! AAAGTTTTTTCGTGAAAAGT+TGG + chr7_3:6148154-6148173 Msa1091030:intron 25.0%
! TAAGCAAACTAATCATCATT+TGG - chr7_3:6148260-6148279 None:intergenic 25.0%
!!! AAATGATGATTAGTTTGCTT+AGG + chr7_3:6148259-6148278 Msa1091030:intron 25.0%
! TTCTCGATATAAAATATTCG+AGG - chr7_3:6148344-6148363 None:intergenic 25.0%
!! AATCTGTAGTTTGTATCTTT+AGG - chr7_3:6149011-6149030 None:intergenic 25.0%
! ATCATCACCAATTAATTATG+TGG + chr7_3:6149109-6149128 Msa1091030:intron 25.0%
! CTAAACACCACATAATTAAT+TGG - chr7_3:6149119-6149138 None:intergenic 25.0%
! ATAAATCATCACCAATTATG+TGG + chr7_3:6149164-6149183 Msa1091030:intron 25.0%
! TAGGGTGTGATTATTAATAT+GGG - chr7_3:6149391-6149410 None:intergenic 25.0%
! TTAGGGTGTGATTATTAATA+TGG - chr7_3:6149392-6149411 None:intergenic 25.0%
!!! CATTGATAAAAATCGCTTTT+AGG - chr7_3:6149410-6149429 None:intergenic 25.0%
! AAAATTAATTGTGTGAAGTC+GGG + chr7_3:6149501-6149520 Msa1091030:intron 25.0%
! AAAATGGGATGAAATAGATA+GGG - chr7_3:6149596-6149615 None:intergenic 25.0%
! TAAAATGGGATGAAATAGAT+AGG - chr7_3:6149597-6149616 None:intergenic 25.0%
! AATGTACCTATTGTATTTAG+AGG + chr7_3:6149706-6149725 Msa1091030:CDS 25.0%
! TTTACTTAAAGCTGCTATAA+GGG + chr7_3:6149995-6150014 Msa1091030:CDS 25.0%
! TAAAAAATACAAGAAAGGAC+TGG - chr7_3:6150270-6150289 None:intergenic 25.0%
! GACACTAAAAAATACAAGAA+AGG - chr7_3:6150275-6150294 None:intergenic 25.0%
! TAGAATACAAAACGATCTTA+GGG - chr7_3:6150423-6150442 None:intergenic 25.0%
! AAACAATAACAGAAGAAAAG+AGG + chr7_3:6150530-6150549 Msa1091030:intron 25.0%
!!! ATGTTTTTTTTTACCCACAA+AGG + chr7_3:6150780-6150799 Msa1091030:intron 25.0%
! CCTTAAATTAATAACCTTTG+TGG - chr7_3:6150797-6150816 None:intergenic 25.0%
! CCACAAAGGTTATTAATTTA+AGG + chr7_3:6150794-6150813 Msa1091030:intron 25.0%
! ATTTAAGAAACATTACCTGT+GGG - chr7_3:6151038-6151057 None:intergenic 25.0%
! TATTTAAGAAACATTACCTG+TGG - chr7_3:6151039-6151058 None:intergenic 25.0%
! AGAACTAGATCGATTAATTT+AGG - chr7_3:6151199-6151218 None:intergenic 25.0%
!!! TTCTGAAATTTTTCATGTCT+TGG + chr7_3:6151215-6151234 Msa1091030:three_prime_UTR 25.0%
! ACAAGATATATTTAACTGTG+TGG + chr7_3:6151629-6151648 Msa1091030:three_prime_UTR 25.0%
! CAAGATATATTTAACTGTGT+GGG + chr7_3:6151630-6151649 Msa1091030:three_prime_UTR 25.0%
! GAAGACTGAAAATTAAATTC+TGG + chr7_3:6151665-6151684 Msa1091030:three_prime_UTR 25.0%
! AACGTAATTGTGTCTAAAAA+AGG - chr7_3:6151779-6151798 None:intergenic 25.0%
!!! TTTTTTAGACACAATTACGT+TGG + chr7_3:6151778-6151797 Msa1091030:three_prime_UTR 25.0%
AAGAGAAAATGAATCGAGAA+AGG - chr7_3:6143850-6143869 None:intergenic 30.0%
GATCGGAAAATGAAAAAACA+CGG - chr7_3:6143882-6143901 None:intergenic 30.0%
CACAAAAACACAGTGAAATT+AGG - chr7_3:6143924-6143943 None:intergenic 30.0%
TGTAGCAAAAAAAACCTAAG+TGG - chr7_3:6143971-6143990 None:intergenic 30.0%
! AATCTATTTTGCAGCAATCA+AGG + chr7_3:6144059-6144078 Msa1091030:intron 30.0%
AAGGAATCAATCAAGATGTT+AGG + chr7_3:6144078-6144097 Msa1091030:exon 30.0%
! GTTAGGTGTTATAAGAAACA+AGG + chr7_3:6144095-6144114 Msa1091030:CDS 30.0%
TCTGAAGATTACTTGTACTA+CGG - chr7_3:6144461-6144480 None:intergenic 30.0%
AAGTAATCTTCAGATTTCGT+AGG + chr7_3:6144467-6144486 Msa1091030:intron 30.0%
AGTAATCTTCAGATTTCGTA+GGG + chr7_3:6144468-6144487 Msa1091030:intron 30.0%
!! TTTCAAGTTTCATCCTTGAT+TGG + chr7_3:6144961-6144980 Msa1091030:intron 30.0%
TAATACTCCCATAGATTGTA+TGG + chr7_3:6145012-6145031 Msa1091030:intron 30.0%
CACTAAACCATACAATCTAT+GGG - chr7_3:6145022-6145041 None:intergenic 30.0%
TCACTAAACCATACAATCTA+TGG - chr7_3:6145023-6145042 None:intergenic 30.0%
GTCTGATATTTGATGAGATA+TGG - chr7_3:6145206-6145225 None:intergenic 30.0%
ACTATCTACCTACTACTATT+AGG - chr7_3:6145416-6145435 None:intergenic 30.0%
! GGTTAATAAAGTATCCTCAA+AGG - chr7_3:6145536-6145555 None:intergenic 30.0%
TCCGACATATATAATATGAC+GGG + chr7_3:6145620-6145639 Msa1091030:intron 30.0%
AAAGGACCAAATTAAGTCAA+TGG - chr7_3:6145891-6145910 None:intergenic 30.0%
AGATGAATTAAGCAAACGAA+AGG - chr7_3:6145909-6145928 None:intergenic 30.0%
!!! ATCTTTCAGTTTTAGAGTTG+AGG + chr7_3:6145925-6145944 Msa1091030:intron 30.0%
ATAAGCAAAGACATTGTAAG+GGG - chr7_3:6146016-6146035 None:intergenic 30.0%
CATAAGCAAAGACATTGTAA+GGG - chr7_3:6146017-6146036 None:intergenic 30.0%
TCATAAGCAAAGACATTGTA+AGG - chr7_3:6146018-6146037 None:intergenic 30.0%
! GTATACACTAAACCATTTTC+AGG - chr7_3:6146063-6146082 None:intergenic 30.0%
GGTTGTATTTGATTATAGGT+TGG + chr7_3:6146131-6146150 Msa1091030:intron 30.0%
! TTATAGGTTGGAGAATATCA+AGG + chr7_3:6146143-6146162 Msa1091030:intron 30.0%
AAGGAAATAACTTGAACAAG+TGG - chr7_3:6146194-6146213 None:intergenic 30.0%
TCCTTCAATTTAGATTTCCA+AGG + chr7_3:6146269-6146288 Msa1091030:intron 30.0%
CCTTCAATTTAGATTTCCAA+GGG + chr7_3:6146270-6146289 Msa1091030:intron 30.0%
AGAAAAATAACCTCAGTGAT+GGG - chr7_3:6146336-6146355 None:intergenic 30.0%
AAGAAAAATAACCTCAGTGA+TGG - chr7_3:6146337-6146356 None:intergenic 30.0%
!! ACTTTGGTAATGTAATGTGA+TGG + chr7_3:6146565-6146584 Msa1091030:intron 30.0%
CCGAAAAATGTAACAAAAAG+TGG - chr7_3:6146740-6146759 None:intergenic 30.0%
!! GGTTAGTTTATTTCCATCTT+AGG + chr7_3:6146770-6146789 Msa1091030:intron 30.0%
TAGTTTATTTCCATCTTAGG+GGG + chr7_3:6146773-6146792 Msa1091030:intron 30.0%
! GACTATCAGGATTTTCAATT+TGG + chr7_3:6146892-6146911 Msa1091030:intron 30.0%
CATGAAGACATAAGATTTCT+TGG - chr7_3:6147265-6147284 None:intergenic 30.0%
! TAGATTTTGCTGGATTTTGT+GGG - chr7_3:6147323-6147342 None:intergenic 30.0%
! TTAGATTTTGCTGGATTTTG+TGG - chr7_3:6147324-6147343 None:intergenic 30.0%
TGTGTTTGGATGATGTAATT+TGG + chr7_3:6147556-6147575 Msa1091030:intron 30.0%
TTATATTGCAGCTGTTTACA+TGG + chr7_3:6147867-6147886 Msa1091030:intron 30.0%
TTGCACACTGAATTTAAGAA+AGG - chr7_3:6148042-6148061 None:intergenic 30.0%
TATTCTTATCACACAGAAGA+CGG - chr7_3:6148215-6148234 None:intergenic 30.0%
CTAATCATCATTTGGAAACT+CGG - chr7_3:6148252-6148271 None:intergenic 30.0%
AAATTAGAAGGATAGTGATG+TGG + chr7_3:6148600-6148619 Msa1091030:intron 30.0%
! TTAAAGCATTTCTGTATGCA+TGG + chr7_3:6148942-6148961 Msa1091030:intron 30.0%
! TGTAGTTTGTATCTTTAGGA+GGG - chr7_3:6149007-6149026 None:intergenic 30.0%
AGATACAAACTACAGATTTG+TGG + chr7_3:6149013-6149032 Msa1091030:intron 30.0%
!!! TGGTTAGTTTTATAGTCACA+TGG + chr7_3:6149191-6149210 Msa1091030:intron 30.0%
!!! GTTTGTTGGTATTTTTTTGC+CGG + chr7_3:6149239-6149258 Msa1091030:intron 30.0%
ATTGACAAGGAATGATATTC+CGG - chr7_3:6149261-6149280 None:intergenic 30.0%
TTATTAATATGGGTATGCAC+AGG - chr7_3:6149381-6149400 None:intergenic 30.0%
AAATCAAATTACATGTCTGC+TGG + chr7_3:6149676-6149695 Msa1091030:CDS 30.0%
AATCAAATTACATGTCTGCT+GGG + chr7_3:6149677-6149696 Msa1091030:CDS 30.0%
GTTTCATAGAAGAAAATGTC+AGG - chr7_3:6149785-6149804 None:intergenic 30.0%
CATAACGAAAGAAAAACAGT+GGG - chr7_3:6149833-6149852 None:intergenic 30.0%
TCATAACGAAAGAAAAACAG+TGG - chr7_3:6149834-6149853 None:intergenic 30.0%
GTTTACTTAAAGCTGCTATA+AGG + chr7_3:6149994-6150013 Msa1091030:CDS 30.0%
!! TCATTTTCAAGGAAAACTAC+AGG - chr7_3:6150029-6150048 None:intergenic 30.0%
! CTTACAGTAACTCATTTTCA+AGG - chr7_3:6150040-6150059 None:intergenic 30.0%
TATTACAGCCTTCTCAAAAA+TGG + chr7_3:6150371-6150390 Msa1091030:CDS 30.0%
CTAGAATACAAAACGATCTT+AGG - chr7_3:6150424-6150443 None:intergenic 30.0%
! CTAAGATCGTTTTGTATTCT+AGG + chr7_3:6150422-6150441 Msa1091030:intron 30.0%
TTATTGCAAATGTGTTTGCT+TGG - chr7_3:6150629-6150648 None:intergenic 30.0%
!!! GTAAAACCACTTTTTGTATG+AGG - chr7_3:6151300-6151319 None:intergenic 30.0%
!!! TTTTACTCATTGATTCTGTC+AGG + chr7_3:6151314-6151333 Msa1091030:three_prime_UTR 30.0%
TTTATAATTCCCAGCATATC+TGG + chr7_3:6151414-6151433 Msa1091030:three_prime_UTR 30.0%
TTATAATTCCCAGCATATCT+GGG + chr7_3:6151415-6151434 Msa1091030:three_prime_UTR 30.0%
!! TCATTTTCTTTCTAGCATAC+CGG + chr7_3:6151560-6151579 Msa1091030:three_prime_UTR 30.0%
!! TAATTTGTTTGCATTGCGTT+TGG + chr7_3:6151688-6151707 Msa1091030:three_prime_UTR 30.0%
! AATTTGTTTGCATTGCGTTT+GGG + chr7_3:6151689-6151708 Msa1091030:three_prime_UTR 30.0%
AAAAGGATGCACTAAAGTAT+GGG - chr7_3:6151762-6151781 None:intergenic 30.0%
AAAAAGGATGCACTAAAGTA+TGG - chr7_3:6151763-6151782 None:intergenic 30.0%
! TGATCTTAGAAAGTGTGAAA+AGG + chr7_3:6151825-6151844 Msa1091030:three_prime_UTR 30.0%
GTAGAGGAATACGAATACTT+AGG - chr7_3:6143747-6143766 None:intergenic 35.0%
ATGAATCGAGAAAGGAATAG+TGG - chr7_3:6143842-6143861 None:intergenic 35.0%
TAAGTGGCAAAAATCGTAAC+CGG - chr7_3:6143955-6143974 None:intergenic 35.0%
CAACAAACAAACCTGTTTAG+CGG - chr7_3:6144256-6144275 None:intergenic 35.0%
!! CATCAAGAAGACTTTAGGAT+CGG - chr7_3:6144399-6144418 None:intergenic 35.0%
GATCCTAAAGTCTTCTTGAT+GGG + chr7_3:6144398-6144417 Msa1091030:CDS 35.0%
GCTGATAAGTTAGCATATAG+AGG + chr7_3:6144510-6144529 Msa1091030:intron 35.0%
!! GAGTTAAGCTTTTTCCGTAA+AGG + chr7_3:6144566-6144585 Msa1091030:intron 35.0%
TTTCAGTCGAATGTGCTTAT+AGG + chr7_3:6144873-6144892 Msa1091030:intron 35.0%
CACTAAAATTGCAATCTGAC+AGG - chr7_3:6145067-6145086 None:intergenic 35.0%
TTGAAGCGTAAATCTTGTCA+TGG - chr7_3:6145272-6145291 None:intergenic 35.0%
! GTTTTACGAAAATAGGGACT+AGG - chr7_3:6145338-6145357 None:intergenic 35.0%
AAGGTCAACTAAGTACTTCA+GGG - chr7_3:6145507-6145526 None:intergenic 35.0%
TAAGGTCAACTAAGTACTTC+AGG - chr7_3:6145508-6145527 None:intergenic 35.0%
TTGACCTTAAGATTCCTTTG+AGG + chr7_3:6145519-6145538 Msa1091030:intron 35.0%
GTATCCTCAAAGGAATCTTA+AGG - chr7_3:6145526-6145545 None:intergenic 35.0%
! CATTCTCTTTTCTACGCTTT+TGG - chr7_3:6145557-6145576 None:intergenic 35.0%
! CAAAAGCGTAGAAAAGAGAA+TGG + chr7_3:6145555-6145574 Msa1091030:intron 35.0%
GCCCGTCATATTATATATGT+CGG - chr7_3:6145624-6145643 None:intergenic 35.0%
!! TATAATATGACGGGCAAAAC+TGG + chr7_3:6145629-6145648 Msa1091030:intron 35.0%
GTTTATGCATGTATGTGTGT+GGG - chr7_3:6145779-6145798 None:intergenic 35.0%
AGTTTATGCATGTATGTGTG+TGG - chr7_3:6145780-6145799 None:intergenic 35.0%
CAATGGTCATATTAACGACT+AGG - chr7_3:6145874-6145893 None:intergenic 35.0%
!!! TTTCAGTTTTAGAGTTGAGG+TGG + chr7_3:6145928-6145947 Msa1091030:intron 35.0%
AGGATATTTCCACCTGAAAA+TGG + chr7_3:6146048-6146067 Msa1091030:intron 35.0%
!! TACACTAAACCATTTTCAGG+TGG - chr7_3:6146060-6146079 None:intergenic 35.0%
AGAATATCAAGGTGCATACA+AGG + chr7_3:6146154-6146173 Msa1091030:CDS 35.0%
! TGTTCAAGTTATTTCCTTGC+TGG + chr7_3:6146196-6146215 Msa1091030:intron 35.0%
CCCTTGGAAATCTAAATTGA+AGG - chr7_3:6146273-6146292 None:intergenic 35.0%
TTAGATTTCCAAGGGACTAT+TGG + chr7_3:6146278-6146297 Msa1091030:intron 35.0%
TTAATCCTGTCATTGCTTTG+AGG + chr7_3:6146458-6146477 Msa1091030:intron 35.0%
ATAAACCTCAAAGCAATGAC+AGG - chr7_3:6146466-6146485 None:intergenic 35.0%
TTATTAGATGGATGCACAGA+TGG - chr7_3:6146530-6146549 None:intergenic 35.0%
! TGGTAATGTAATGTGATGGA+TGG + chr7_3:6146569-6146588 Msa1091030:intron 35.0%
TGTTACTAGAGTTAAGAAGC+AGG - chr7_3:6146693-6146712 None:intergenic 35.0%
GGAAATAAACTAACCACTCA+TGG - chr7_3:6146765-6146784 None:intergenic 35.0%
AAAATCCCTTAGAGTGTGTT+TGG + chr7_3:6147542-6147561 Msa1091030:intron 35.0%
ATCATCCAAACACACTCTAA+GGG - chr7_3:6147550-6147569 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr7_3:6147616-6147635 None:intergenic 35.0%
GAGGAAATGTAATGTTACGA+GGG - chr7_3:6147634-6147653 None:intergenic 35.0%
TGAGGAAATGTAATGTTACG+AGG - chr7_3:6147635-6147654 None:intergenic 35.0%
TGAATTCCATTGTTTGGATG+GGG - chr7_3:6147674-6147693 None:intergenic 35.0%
GTGAATTCCATTGTTTGGAT+GGG - chr7_3:6147675-6147694 None:intergenic 35.0%
TTGAGGTGAATTCCATTGTT+TGG - chr7_3:6147680-6147699 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr7_3:6147616-6147635 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG - chr7_3:6147715-6147734 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG - chr7_3:6147716-6147735 None:intergenic 35.0%
! TTCTAAGAGTGTGTTTGGAT+GGG - chr7_3:6147748-6147767 None:intergenic 35.0%
! ATTCTAAGAGTGTGTTTGGA+TGG - chr7_3:6147749-6147768 None:intergenic 35.0%
! TAGGATTCTAAGAGTGTGTT+TGG - chr7_3:6147753-6147772 None:intergenic 35.0%
! TCACTGGTTGTAACTTCTAA+GGG - chr7_3:6147789-6147808 None:intergenic 35.0%
TGTTCATTAAATATGCAGGC+TGG + chr7_3:6147911-6147930 Msa1091030:intron 35.0%
GTTCATTAAATATGCAGGCT+GGG + chr7_3:6147912-6147931 Msa1091030:intron 35.0%
AATGTCATAAACTCCACAAC+AGG - chr7_3:6147980-6147999 None:intergenic 35.0%
ACCAAACACAGAGAAATCAT+GGG - chr7_3:6148096-6148115 None:intergenic 35.0%
AACCAAACACAGAGAAATCA+TGG - chr7_3:6148097-6148116 None:intergenic 35.0%
!!! TCTGTGTTTGGTTTTCTGTT+TGG + chr7_3:6148104-6148123 Msa1091030:intron 35.0%
GCTTCCTTCAGATTATTAGA+TGG + chr7_3:6148176-6148195 Msa1091030:intron 35.0%
GATGCCATCTAATAATCTGA+AGG - chr7_3:6148183-6148202 None:intergenic 35.0%
AGAATGATGTCTTTCACTCT+GGG - chr7_3:6148445-6148464 None:intergenic 35.0%
AAGAATGATGTCTTTCACTC+TGG - chr7_3:6148446-6148465 None:intergenic 35.0%
AAGGATTTGAAGATTCTGAG+GGG - chr7_3:6148685-6148704 None:intergenic 35.0%
CAAGGATTTGAAGATTCTGA+GGG - chr7_3:6148686-6148705 None:intergenic 35.0%
TCAAGGATTTGAAGATTCTG+AGG - chr7_3:6148687-6148706 None:intergenic 35.0%
!!! CTGTTTTGACTCAGTTATCA+AGG - chr7_3:6148704-6148723 None:intergenic 35.0%
ATTTCTGTATGCATGGTGAA+AGG + chr7_3:6148949-6148968 Msa1091030:intron 35.0%
AATCAATCACGGGATTACAT+GGG - chr7_3:6148983-6149002 None:intergenic 35.0%
! CTGTAGTTTGTATCTTTAGG+AGG - chr7_3:6149008-6149027 None:intergenic 35.0%
TCTTCCAATATAGAGCTCAA+CGG - chr7_3:6149050-6149069 None:intergenic 35.0%
ATCACCAATTATGTGGTGTT+TGG + chr7_3:6149171-6149190 Msa1091030:intron 35.0%
CTAACCAAACACCACATAAT+TGG - chr7_3:6149178-6149197 None:intergenic 35.0%
!!! GTCAGTCAAGTTTTGTTTGT+TGG + chr7_3:6149225-6149244 Msa1091030:intron 35.0%
CAGGAAGAATTGCAAACATA+AGG - chr7_3:6149362-6149381 None:intergenic 35.0%
TAGTAAGCCAAGAAGATGAA+GGG - chr7_3:6149567-6149586 None:intergenic 35.0%
TTGGGTCCTCTAAATACAAT+AGG - chr7_3:6149715-6149734 None:intergenic 35.0%
ATTGTATTTAGAGGACCCAA+TGG + chr7_3:6149715-6149734 Msa1091030:CDS 35.0%
CTGAAGTATATGTGCTCAAT+GGG - chr7_3:6149857-6149876 None:intergenic 35.0%
ACTGAAGTATATGTGCTCAA+TGG - chr7_3:6149858-6149877 None:intergenic 35.0%
TGCATAAAAGCAAAGTTGTG+GGG - chr7_3:6149900-6149919 None:intergenic 35.0%
CTGCATAAAAGCAAAGTTGT+GGG - chr7_3:6149901-6149920 None:intergenic 35.0%
ACTGCATAAAAGCAAAGTTG+TGG - chr7_3:6149902-6149921 None:intergenic 35.0%
TTATGCAGTGTTATGCATCT+TGG + chr7_3:6149913-6149932 Msa1091030:intron 35.0%
TGACTTATGTGCTGTAGATA+TGG + chr7_3:6150149-6150168 Msa1091030:intron 35.0%
GAAACTGGAATCAAGAACTT+CGG - chr7_3:6150195-6150214 None:intergenic 35.0%
CTTAACAGATTGAGAGAGAA+GGG + chr7_3:6150337-6150356 Msa1091030:intron 35.0%
!! AAAGCCAACCATTTTTGAGA+AGG - chr7_3:6150382-6150401 None:intergenic 35.0%
TTACCTAGTAGTATGTGAGA+TGG + chr7_3:6150475-6150494 Msa1091030:intron 35.0%
TATCCATCTCACATACTACT+AGG - chr7_3:6150481-6150500 None:intergenic 35.0%
GTAGTATGTGAGATGGATAT+AGG + chr7_3:6150482-6150501 Msa1091030:intron 35.0%
! CCAAAGAGAAAGTGCATAAA+GGG - chr7_3:6150744-6150763 None:intergenic 35.0%
! ACCAAAGAGAAAGTGCATAA+AGG - chr7_3:6150745-6150764 None:intergenic 35.0%
CATTATATCTCTTTGCTTGC+TGG + chr7_3:6151092-6151111 Msa1091030:intron 35.0%
! TCATGTCTTGGTTAGTTCTT+TGG + chr7_3:6151227-6151246 Msa1091030:three_prime_UTR 35.0%
TGATAACAATGACACAAGAG+AGG + chr7_3:6151464-6151483 Msa1091030:three_prime_UTR 35.0%
!! ACAAGAGAGGAAGTTTTGTA+TGG + chr7_3:6151477-6151496 Msa1091030:three_prime_UTR 35.0%
!! AAGTTTTGTATGGAACCTAG+TGG + chr7_3:6151487-6151506 Msa1091030:three_prime_UTR 35.0%
AAAAACAGAAGTTGACCACT+AGG - chr7_3:6151505-6151524 None:intergenic 35.0%
TAAGATCAAATCGACGTGAT+AGG - chr7_3:6151813-6151832 None:intergenic 35.0%
!! TCAGAGTTGGTGAGTATCAA+TGG - chr7_3:6143797-6143816 None:intergenic 40.0%
GGAACGAAAAGTTTCAGAGT+TGG - chr7_3:6143810-6143829 None:intergenic 40.0%
!! TCTGAAACTTTTCGTTCCAC+AGG + chr7_3:6143812-6143831 Msa1091030:five_prime_UTR 40.0%
! AAGGAATAGTGGAATACCTG+TGG - chr7_3:6143831-6143850 None:intergenic 40.0%
!! GGTTACGATTTTTGCCACTT+AGG + chr7_3:6143954-6143973 Msa1091030:intron 40.0%
AGAAGAGAGATGTCTGAATG+CGG - chr7_3:6144232-6144251 None:intergenic 40.0%
CGATCCTAAAGTCTTCTTGA+TGG + chr7_3:6144397-6144416 Msa1091030:CDS 40.0%
TCACCCATCAAGAAGACTTT+AGG - chr7_3:6144404-6144423 None:intergenic 40.0%
TGAAGAGGTAAAGCGAGATA+TGG + chr7_3:6144421-6144440 Msa1091030:intron 40.0%
AAGCTACGAATATCCGCTAT+AGG - chr7_3:6144545-6144564 None:intergenic 40.0%
AACACTACAAAGGGTCTGTT+TGG - chr7_3:6144634-6144653 None:intergenic 40.0%
AACAGACCCTTTGTAGTGTT+TGG + chr7_3:6144634-6144653 Msa1091030:intron 40.0%
!! AAGTCCAAGTCGGTTTTGTA+GGG - chr7_3:6145136-6145155 None:intergenic 40.0%
!! AAAACCGACTTGGACTTGTA+AGG + chr7_3:6145139-6145158 Msa1091030:intron 40.0%
GGTCAGAAAATCTGTTTGAG+TGG - chr7_3:6145185-6145204 None:intergenic 40.0%
TATCAGACTTCTCAACAACC+AGG + chr7_3:6145218-6145237 Msa1091030:intron 40.0%
TAACACAAAAGTCAAAGGCC+TGG - chr7_3:6145239-6145258 None:intergenic 40.0%
AGTAGGTAGATAGTACGAAG+CGG + chr7_3:6145422-6145441 Msa1091030:intron 40.0%
CGTAGAAAAGAGAATGGAAG+AGG + chr7_3:6145561-6145580 Msa1091030:intron 40.0%
! AAGAATACCTCTAAGAGACC+TGG + chr7_3:6145589-6145608 Msa1091030:intron 40.0%
ATATGTCGGAATATAGGACC+AGG - chr7_3:6145610-6145629 None:intergenic 40.0%
! TGATTTGTACATTCCGAAGC+CGG + chr7_3:6145819-6145838 Msa1091030:intron 40.0%
CATATTAACGACTAGGCAAG+TGG - chr7_3:6145867-6145886 None:intergenic 40.0%
GTTCATTCATGCAATGCAAG+TGG - chr7_3:6145974-6145993 None:intergenic 40.0%
TTGTAAGGGGAAGATTGTGT+GGG - chr7_3:6146003-6146022 None:intergenic 40.0%
ATTGTAAGGGGAAGATTGTG+TGG - chr7_3:6146004-6146023 None:intergenic 40.0%
TTGCTTATGACATCTGCTTC+AGG + chr7_3:6146028-6146047 Msa1091030:intron 40.0%
TATCAAGGTGCATACAAGGT+TGG + chr7_3:6146158-6146177 Msa1091030:intron 40.0%
AAATAAAGCAACAGCCAGCA+AGG - chr7_3:6146213-6146232 None:intergenic 40.0%
ATACTTCTCCAATAGTCCCT+TGG - chr7_3:6146289-6146308 None:intergenic 40.0%
AAGGGACTATTGGAGAAGTA+TGG + chr7_3:6146288-6146307 Msa1091030:CDS 40.0%
GTTTAAACCTCGCAAATCAG+TGG - chr7_3:6146394-6146413 None:intergenic 40.0%
GGTTTATATACCAGTGCTTG+TGG + chr7_3:6146479-6146498 Msa1091030:intron 40.0%
ATATACCAGTGCTTGTGGAT+TGG + chr7_3:6146484-6146503 Msa1091030:intron 40.0%
!! ATGTAATGTGATGGATGGCA+TGG + chr7_3:6146574-6146593 Msa1091030:intron 40.0%
!! TGTAATGTGATGGATGGCAT+GGG + chr7_3:6146575-6146594 Msa1091030:intron 40.0%
!! ACATTTTTCGGTACCATGAG+TGG + chr7_3:6146749-6146768 Msa1091030:intron 40.0%
CATCATCCAAACACACTCTA+AGG - chr7_3:6147551-6147570 None:intergenic 40.0%
GGGAATGCAATGTAATGTTG+AGG - chr7_3:6147653-6147672 None:intergenic 40.0%
GAATTCCATTGTTTGGATGG+GGG - chr7_3:6147673-6147692 None:intergenic 40.0%
GGTGAATTCCATTGTTTGGA+TGG - chr7_3:6147676-6147695 None:intergenic 40.0%
! TCTAAGAGTGTGTTTGGATG+GGG - chr7_3:6147747-6147766 None:intergenic 40.0%
TAAGGGGGATGTATTGGATT+AGG - chr7_3:6147772-6147791 None:intergenic 40.0%
! AACTTCTAAGGGGGATGTAT+TGG - chr7_3:6147778-6147797 None:intergenic 40.0%
! ACTGGTTGTAACTTCTAAGG+GGG - chr7_3:6147787-6147806 None:intergenic 40.0%
! CACTGGTTGTAACTTCTAAG+GGG - chr7_3:6147788-6147807 None:intergenic 40.0%
! CTCACTGGTTGTAACTTCTA+AGG - chr7_3:6147790-6147809 None:intergenic 40.0%
TAGAAGTTACAACCAGTGAG+TGG + chr7_3:6147790-6147809 Msa1091030:intron 40.0%
TTCATACAAAGTCCACTCAC+TGG - chr7_3:6147805-6147824 None:intergenic 40.0%
! GACATTTAACTTCTCCATGC+AGG + chr7_3:6147994-6148013 Msa1091030:CDS 40.0%
GAGATAAACACTAACCTGCA+TGG - chr7_3:6148011-6148030 None:intergenic 40.0%
CCAAACACAGAGAAATCATG+GGG - chr7_3:6148095-6148114 None:intergenic 40.0%
! ATAGTGATGTGGCTTGTGAA+CGG + chr7_3:6148611-6148630 Msa1091030:intron 40.0%
AAAGCTCAAACCATAATCCG+TGG + chr7_3:6148801-6148820 Msa1091030:intron 40.0%
AAGCTCAAACCATAATCCGT+GGG + chr7_3:6148802-6148821 Msa1091030:intron 40.0%
CAATCAATCACGGGATTACA+TGG - chr7_3:6148984-6149003 None:intergenic 40.0%
TTTAGGAGGGCAATCAATCA+CGG - chr7_3:6148994-6149013 None:intergenic 40.0%
ACAAACTACAGATTTGTGGC+TGG + chr7_3:6149017-6149036 Msa1091030:intron 40.0%
AAACCCGTTGAGCTCTATAT+TGG + chr7_3:6149043-6149062 Msa1091030:intron 40.0%
CTTCCAATATAGAGCTCAAC+GGG - chr7_3:6149049-6149068 None:intergenic 40.0%
GAGCTCTATATTGGAAGATC+TGG + chr7_3:6149052-6149071 Msa1091030:intron 40.0%
!! CAAAACTTGACTGACTCGTA+TGG - chr7_3:6149220-6149239 None:intergenic 40.0%
CTAGTAAGCCAAGAAGATGA+AGG - chr7_3:6149568-6149587 None:intergenic 40.0%
CTTCATCTTCTTGGCTTACT+AGG + chr7_3:6149566-6149585 Msa1091030:intron 40.0%
GTCATCTTGATTTCTGTTGC+AGG + chr7_3:6149624-6149643 Msa1091030:intron 40.0%
CAGTGTTATGCATCTTGGTA+TGG + chr7_3:6149918-6149937 Msa1091030:intron 40.0%
CGAGCATCTTCAGATGAATA+TGG - chr7_3:6149972-6149991 None:intergenic 40.0%
TATTCATCTGAAGATGCTCG+TGG + chr7_3:6149972-6149991 Msa1091030:CDS 40.0%
CAAGGAAAACTACAGGATCA+GGG - chr7_3:6150022-6150041 None:intergenic 40.0%
TCAAGGAAAACTACAGGATC+AGG - chr7_3:6150023-6150042 None:intergenic 40.0%
!! AGTACCTTTGCTTTTCCGAT+GGG - chr7_3:6150224-6150243 None:intergenic 40.0%
!! AAGTACCTTTGCTTTTCCGA+TGG - chr7_3:6150225-6150244 None:intergenic 40.0%
GCTTAACAGATTGAGAGAGA+AGG + chr7_3:6150336-6150355 Msa1091030:intron 40.0%
ACAGCCTTCTCAAAAATGGT+TGG + chr7_3:6150375-6150394 Msa1091030:CDS 40.0%
!! AATGGTTGGCTTTGCTCTAA+AGG + chr7_3:6150389-6150408 Msa1091030:CDS 40.0%
TGCAAATGTGTTTGCTTGGT+AGG - chr7_3:6150625-6150644 None:intergenic 40.0%
CCCTTTATGCACTTTCTCTT+TGG + chr7_3:6150741-6150760 Msa1091030:intron 40.0%
!! TTTCCTGACAGAAGCATTGA+TGG - chr7_3:6150845-6150864 None:intergenic 40.0%
!! TTTTGGCTATCTTGATGCAC+CGG + chr7_3:6150948-6150967 Msa1091030:CDS 40.0%
!! AGATTTGCTGCATAAGGCAT+GGG - chr7_3:6151000-6151019 None:intergenic 40.0%
!! CTTTCCAGATTTGCTGCATA+AGG - chr7_3:6151006-6151025 None:intergenic 40.0%
TGCAGCAAATCTGGAAAGAT+TGG + chr7_3:6151008-6151027 Msa1091030:CDS 40.0%
! TCTTTGCTTGCTGGTATATG+TGG + chr7_3:6151101-6151120 Msa1091030:intron 40.0%
! AGGTTGTGGTGGAAATTTGA+GGG - chr7_3:6151280-6151299 None:intergenic 40.0%
! CTTTTTGTATGAGGTTGTGG+TGG - chr7_3:6151291-6151310 None:intergenic 40.0%
!!! CCACTTTTTGTATGAGGTTG+TGG - chr7_3:6151294-6151313 None:intergenic 40.0%
CCACAACCTCATACAAAAAG+TGG + chr7_3:6151291-6151310 Msa1091030:three_prime_UTR 40.0%
!! TCATTGATTCTGTCAGGCTT+TGG + chr7_3:6151320-6151339 Msa1091030:three_prime_UTR 40.0%
ACTCAAAACAGCAAGCAAGT+TGG - chr7_3:6151598-6151617 None:intergenic 40.0%
TTGAATTGTGGCTGTTATCC+CGG + chr7_3:6151715-6151734 Msa1091030:three_prime_UTR 40.0%
! GAAAGTGTGAAAAGGCAGAT+TGG + chr7_3:6151833-6151852 Msa1091030:three_prime_UTR 40.0%
!! GTGTTTTTGTGAGATCTCGC+CGG + chr7_3:6143933-6143952 Msa1091030:intron 45.0%
TGTCTGAATGCGGAAAAGGA+AGG - chr7_3:6144222-6144241 None:intergenic 45.0%
GAGATGTCTGAATGCGGAAA+AGG - chr7_3:6144226-6144245 None:intergenic 45.0%
TCTCTCTTCTTCCGCTAAAC+AGG + chr7_3:6144242-6144261 Msa1091030:CDS 45.0%
!! CAAGAAGACTTTAGGATCGG+CGG - chr7_3:6144396-6144415 None:intergenic 45.0%
! AGTCTTCTTGATGGGTGAAG+AGG + chr7_3:6144406-6144425 Msa1091030:CDS 45.0%
AGATTTCGTAGGGCTCTGTT+TGG + chr7_3:6144478-6144497 Msa1091030:intron 45.0%
GAGGATGAGCTATCCTATAG+CGG + chr7_3:6144529-6144548 Msa1091030:intron 45.0%
CCTCTTTCCTAGGTTCTGTT+TGG - chr7_3:6144930-6144949 None:intergenic 45.0%
CCAAACAGAACCTAGGAAAG+AGG + chr7_3:6144927-6144946 Msa1091030:intron 45.0%
ACTGATCTTGCCTCTTTCCT+AGG - chr7_3:6144940-6144959 None:intergenic 45.0%
CCACTCTAGACAACCAATCA+AGG - chr7_3:6144977-6144996 None:intergenic 45.0%
! CCTTGATTGGTTGTCTAGAG+TGG + chr7_3:6144974-6144993 Msa1091030:intron 45.0%
GAAACCCTACAAAACCGACT+TGG + chr7_3:6145129-6145148 Msa1091030:intron 45.0%
!! CAAGTCCAAGTCGGTTTTGT+AGG - chr7_3:6145137-6145156 None:intergenic 45.0%
GTCACCTTACAAGTCCAAGT+CGG - chr7_3:6145146-6145165 None:intergenic 45.0%
TATAGGACCAGGTCTCTTAG+AGG - chr7_3:6145599-6145618 None:intergenic 45.0%
GATTTGTACATTCCGAAGCC+GGG + chr7_3:6145820-6145839 Msa1091030:intron 45.0%
ATTTGTACATTCCGAAGCCG+GGG + chr7_3:6145821-6145840 Msa1091030:intron 45.0%
AACTTGAACAGAAGAAGCCC+CGG - chr7_3:6145841-6145860 None:intergenic 45.0%
ATTCATGCAATGCAAGTGGC+TGG - chr7_3:6145970-6145989 None:intergenic 45.0%
TTGTACCAATCCACAAGCAC+TGG - chr7_3:6146492-6146511 None:intergenic 45.0%
!! GTAATGTGATGGATGGCATG+GGG + chr7_3:6146576-6146595 Msa1091030:intron 45.0%
AGTTAGCAGAAGTTCGCATG+AGG - chr7_3:6146621-6146640 None:intergenic 45.0%
! TTCCATCTTAGGGGGTGTAT+TGG + chr7_3:6146781-6146800 Msa1091030:intron 45.0%
ATCCAATACACCCCCTAAGA+TGG - chr7_3:6146786-6146805 None:intergenic 45.0%
ATAAAGAGAGGGGAGAAGAG+AGG + chr7_3:6147079-6147098 Msa1091030:intron 45.0%
GAGAGAGAGAGAGAAAAGAG+AGG + chr7_3:6147136-6147155 Msa1091030:intron 45.0%
GAAAAGAGAGGAGAGAGAGA+AGG + chr7_3:6147194-6147213 Msa1091030:intron 45.0%
AGGAGAGAGAGAAGGATGAA+GGG + chr7_3:6147202-6147221 Msa1091030:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr7_3:6147733-6147752 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr7_3:6147734-6147753 None:intergenic 45.0%
! CTAAGAGTGTGTTTGGATGG+GGG - chr7_3:6147746-6147765 None:intergenic 45.0%
AATATGCAGGCTGGGTTTAC+TGG + chr7_3:6147920-6147939 Msa1091030:intron 45.0%
ATATGCAGGCTGGGTTTACT+GGG + chr7_3:6147921-6147940 Msa1091030:intron 45.0%
! CTATGGTCTAAAGCCTGTTG+TGG + chr7_3:6147964-6147983 Msa1091030:CDS 45.0%
CCCCATGATTTCTCTGTGTT+TGG + chr7_3:6148092-6148111 Msa1091030:intron 45.0%
AAACCACACCATACAGTTGG+AGG + chr7_3:6148635-6148654 Msa1091030:intron 45.0%
AACCACACCATACAGTTGGA+GGG + chr7_3:6148636-6148655 Msa1091030:intron 45.0%
AGCTCAAACCATAATCCGTG+GGG + chr7_3:6148803-6148822 Msa1091030:intron 45.0%
TGGAGGTGAATTAGAAGGGT+AGG + chr7_3:6148826-6148845 Msa1091030:intron 45.0%
GTGAATTAGAAGGGTAGGCA+TGG + chr7_3:6148831-6148850 Msa1091030:intron 45.0%
AAACCCCAACAGAAACCTGA+CGG + chr7_3:6148857-6148876 Msa1091030:intron 45.0%
ATCACGGGATTACATGGGTT+GGG - chr7_3:6148978-6148997 None:intergenic 45.0%
AATCACGGGATTACATGGGT+TGG - chr7_3:6148979-6148998 None:intergenic 45.0%
TTAGGAGGGCAATCAATCAC+GGG - chr7_3:6148993-6149012 None:intergenic 45.0%
AACTACAGATTTGTGGCTGG+AGG + chr7_3:6149020-6149039 Msa1091030:intron 45.0%
AAGCACTCCCTTCATCTTCT+TGG + chr7_3:6149557-6149576 Msa1091030:intron 45.0%
!! ATGCCCTGGGTTGAAAGTTT+TGG + chr7_3:6149944-6149963 Msa1091030:CDS 45.0%
GTGCCAAAACTTTCAACCCA+GGG - chr7_3:6149950-6149969 None:intergenic 45.0%
CAAGAACTTCGGCAGAAACA+GGG - chr7_3:6150184-6150203 None:intergenic 45.0%
TCAAGAACTTCGGCAGAAAC+AGG - chr7_3:6150185-6150204 None:intergenic 45.0%
ATGTGTTTGCTTGGTAGGAC+AGG - chr7_3:6150620-6150639 None:intergenic 45.0%
AAAGGAAGGAATCAGTGCTG+AGG + chr7_3:6150686-6150705 Msa1091030:CDS 45.0%
TGTCAGGAAAACCAACAGAC+TGG + chr7_3:6150855-6150874 Msa1091030:CDS 45.0%
TTCAACTGTCACCAGTCTGT+TGG - chr7_3:6150869-6150888 None:intergenic 45.0%
AGACTGGTGACAGTTGAAGA+AGG + chr7_3:6150871-6150890 Msa1091030:CDS 45.0%
GACTGGTGACAGTTGAAGAA+GGG + chr7_3:6150872-6150891 Msa1091030:CDS 45.0%
AATCTGTGCATCTGTCATCG+AGG + chr7_3:6150921-6150940 Msa1091030:CDS 45.0%
! TCTGTCATCGAGGAGAGTTT+TGG + chr7_3:6150931-6150950 Msa1091030:CDS 45.0%
!! CAGATTTGCTGCATAAGGCA+TGG - chr7_3:6151001-6151020 None:intergenic 45.0%
CATGCCTTATGCAGCAAATC+TGG + chr7_3:6150999-6151018 Msa1091030:CDS 45.0%
ATTTAGGCAGTTGCAGCCAT+AGG - chr7_3:6151183-6151202 None:intergenic 45.0%
! GAGGTTGTGGTGGAAATTTG+AGG - chr7_3:6151281-6151300 None:intergenic 45.0%
TAATTCCCAGCATATCTGGG+AGG + chr7_3:6151418-6151437 Msa1091030:three_prime_UTR 45.0%
AACATCCTCCCAGATATGCT+GGG - chr7_3:6151426-6151445 None:intergenic 45.0%
TAGCATACCGGAAACTGCAA+AGG + chr7_3:6151572-6151591 Msa1091030:three_prime_UTR 45.0%
!! AAGTTGGCCTTTGCAGTTTC+CGG - chr7_3:6151582-6151601 None:intergenic 45.0%
! GCGTTTGGGACTTTGAATTG+TGG + chr7_3:6151703-6151722 Msa1091030:three_prime_UTR 45.0%
TCTCAGAAGCAGGCTTATAC+CGG - chr7_3:6151737-6151756 None:intergenic 45.0%
AGTATGGGTATCTCAGAAGC+AGG - chr7_3:6151747-6151766 None:intergenic 45.0%
GGTCTTGCCAAACAGAACCT+AGG + chr7_3:6144920-6144939 Msa1091030:intron 50.0%
AGTGTAACGCCTCAGCATTG+AGG - chr7_3:6145449-6145468 None:intergenic 50.0%
! TGGAGAAGTATGGTCCTGAG+AGG + chr7_3:6146298-6146317 Msa1091030:CDS 50.0%
! GGAGAAGTATGGTCCTGAGA+GGG + chr7_3:6146299-6146318 Msa1091030:CDS 50.0%
!! TTTGCAGCCACTGATTTGCG+AGG + chr7_3:6146384-6146403 Msa1091030:intron 50.0%
CATGAAAGGAAGGACAGCGA+GGG - chr7_3:6146420-6146439 None:intergenic 50.0%
ACATGAAAGGAAGGACAGCG+AGG - chr7_3:6146421-6146440 None:intergenic 50.0%
TAGATGGATGCACAGATGGC+AGG - chr7_3:6146526-6146545 None:intergenic 50.0%
! ATGGCATGGGGTGTCATGTT+GGG + chr7_3:6146588-6146607 Msa1091030:intron 50.0%
AGGAGAGAGACGAAGAGAGA+AGG + chr7_3:6147156-6147175 Msa1091030:intron 50.0%
GGAGAGAGACGAAGAGAGAA+GGG + chr7_3:6147157-6147176 Msa1091030:intron 50.0%
AGAGAGGAGGGAGAAAAGAG+AGG + chr7_3:6147182-6147201 Msa1091030:intron 50.0%
GAGGAGAGAGAGAAGGATGA+AGG + chr7_3:6147201-6147220 Msa1091030:intron 50.0%
GCATTCCCCCATCCAAACAA+TGG + chr7_3:6147665-6147684 Msa1091030:intron 50.0%
GGGTTTACTGGGATTGGAGT+TGG + chr7_3:6147932-6147951 Msa1091030:CDS 50.0%
!! GGAGTTGGTGCTGCTTACTA+TGG + chr7_3:6147947-6147966 Msa1091030:CDS 50.0%
GGAATCTGCAAGCAATGCTC+TGG + chr7_3:6148125-6148144 Msa1091030:intron 50.0%
GGCAAACCACACCATACAGT+TGG + chr7_3:6148632-6148651 Msa1091030:intron 50.0%
ACCACACCATACAGTTGGAG+GGG + chr7_3:6148637-6148656 Msa1091030:intron 50.0%
TCAAACCATAATCCGTGGGG+TGG + chr7_3:6148806-6148825 Msa1091030:intron 50.0%
TCTAATTCACCTCCACCCCA+CGG - chr7_3:6148821-6148840 None:intergenic 50.0%
TGGGGTGGAGGTGAATTAGA+AGG + chr7_3:6148821-6148840 Msa1091030:intron 50.0%
GGGGTGGAGGTGAATTAGAA+GGG + chr7_3:6148822-6148841 Msa1091030:intron 50.0%
AACCCCAACAGAAACCTGAC+GGG + chr7_3:6148858-6148877 Msa1091030:intron 50.0%
ACTGATATTGTGTCCCCGTC+AGG - chr7_3:6148875-6148894 None:intergenic 50.0%
GGTGCCAAAACTTTCAACCC+AGG - chr7_3:6149951-6149970 None:intergenic 50.0%
TCCAGTTTCTGCCTTCCCAT+CGG + chr7_3:6150206-6150225 Msa1091030:CDS 50.0%
!! CCTTTGCTTTTCCGATGGGA+AGG - chr7_3:6150220-6150239 None:intergenic 50.0%
CCTTCCCATCGGAAAAGCAA+AGG + chr7_3:6150217-6150236 Msa1091030:CDS 50.0%
TTGCTTGGTAGGACAGGAAG+AGG - chr7_3:6150614-6150633 None:intergenic 50.0%
GCTGAGACACTAGCAAAGGA+AGG + chr7_3:6150672-6150691 Msa1091030:CDS 50.0%
! GAAGGAATCAGTGCTGAGGT+AGG + chr7_3:6150690-6150709 Msa1091030:intron 50.0%
!! TTGATGGTGGCTCGATCAAG+CGG - chr7_3:6150829-6150848 None:intergenic 50.0%
!! CCTGACAGAAGCATTGATGG+TGG - chr7_3:6150842-6150861 None:intergenic 50.0%
CCACCATCAATGCTTCTGTC+AGG + chr7_3:6150839-6150858 Msa1091030:CDS 50.0%
GAAGAAGGGTTTCCTCAGCA+TGG + chr7_3:6150886-6150905 Msa1091030:CDS 50.0%
ATGCCACAGATCTGTGCCTA+TGG + chr7_3:6151164-6151183 Msa1091030:CDS 50.0%
GAACATCCTCCCAGATATGC+TGG - chr7_3:6151427-6151446 None:intergenic 50.0%
CTCAGAAGCAGGCTTATACC+GGG - chr7_3:6151736-6151755 None:intergenic 50.0%
! GAGAGAGAGAGAGAGCGTAG+AGG - chr7_3:6143763-6143782 None:intergenic 55.0%
AACAGAAGAAGCCCCGGCTT+CGG - chr7_3:6145835-6145854 None:intergenic 55.0%
! TGCAATGCAAGTGGCTGGCT+AGG - chr7_3:6145965-6145984 None:intergenic 55.0%
TCTCGACACTCCCATCACTG+AGG + chr7_3:6146323-6146342 Msa1091030:CDS 55.0%
AAAGGAAGGACAGCGAGGGA+TGG - chr7_3:6146416-6146435 None:intergenic 55.0%
! GATGGCATGGGGTGTCATGT+TGG + chr7_3:6146587-6146606 Msa1091030:intron 55.0%
AAGAGAGGGGAGAAGAGAGG+AGG + chr7_3:6147082-6147101 Msa1091030:intron 55.0%
AGAGAGGGGAGAAGAGAGGA+GGG + chr7_3:6147083-6147102 Msa1091030:intron 55.0%
CGAAGAGAGAAGGGAGAGAG+AGG + chr7_3:6147166-6147185 Msa1091030:intron 55.0%
AGAGAGAAGGGAGAGAGAGG+AGG + chr7_3:6147169-6147188 Msa1091030:intron 55.0%
GAGAGAAGGGAGAGAGAGGA+GGG + chr7_3:6147170-6147189 Msa1091030:intron 55.0%
CAGGCTGGGTTTACTGGGAT+TGG + chr7_3:6147926-6147945 Msa1091030:intron 55.0%
CCACACCATACAGTTGGAGG+GGG + chr7_3:6148638-6148657 Msa1091030:intron 55.0%
AACCATAATCCGTGGGGTGG+AGG + chr7_3:6148809-6148828 Msa1091030:intron 55.0%
ACCCCAACAGAAACCTGACG+GGG + chr7_3:6148859-6148878 Msa1091030:intron 55.0%
TCCCCGTCAGGTTTCTGTTG+GGG - chr7_3:6148863-6148882 None:intergenic 55.0%
GTCCCCGTCAGGTTTCTGTT+GGG - chr7_3:6148864-6148883 None:intergenic 55.0%
TGTCCCCGTCAGGTTTCTGT+TGG - chr7_3:6148865-6148884 None:intergenic 55.0%
ACACCAGCAGCAGCACCATT+GGG - chr7_3:6149733-6149752 None:intergenic 55.0%
AACACCAGCAGCAGCACCAT+TGG - chr7_3:6149734-6149753 None:intergenic 55.0%
!! AATGGTGCTGCTGCTGGTGT+TGG + chr7_3:6149733-6149752 Msa1091030:CDS 55.0%
TCTTGGTATGGCTCATGCCC+TGG + chr7_3:6149930-6149949 Msa1091030:CDS 55.0%
CTTGGTATGGCTCATGCCCT+GGG + chr7_3:6149931-6149950 Msa1091030:CDS 55.0%
TCCGATGGGAAGGCAGAAAC+TGG - chr7_3:6150210-6150229 None:intergenic 55.0%
GGCTGCTGAGACACTAGCAA+AGG + chr7_3:6150668-6150687 Msa1091030:intron 55.0%
GGGTTTCCTCAGCATGGTGT+TGG + chr7_3:6150892-6150911 Msa1091030:CDS 55.0%
TGGCTATCTTGATGCACCGG+TGG + chr7_3:6150951-6150970 Msa1091030:CDS 55.0%
! GGAAAGATTGGCTGTCCCAC+AGG + chr7_3:6151020-6151039 Msa1091030:CDS 55.0%
CAGCCATAGGCACAGATCTG+TGG - chr7_3:6151170-6151189 None:intergenic 55.0%
CGAAGCGGTCCTCAATGCTG+AGG + chr7_3:6145437-6145456 Msa1091030:intron 60.0%
!! GGAGTGTCGAGAACCCTCTC+AGG - chr7_3:6146315-6146334 None:intergenic 60.0%
AGAGGAGGGAGAGGAGAGAG+AGG + chr7_3:6147097-6147116 Msa1091030:intron 60.0%
GAGGAGGGAGAGGAGAGAGA+GGG + chr7_3:6147098-6147117 Msa1091030:intron 60.0%
GAGAGAGAGGGAGAGGAGAG+AGG + chr7_3:6147110-6147129 Msa1091030:intron 60.0%
CCCCCTCCAACTGTATGGTG+TGG - chr7_3:6148641-6148660 None:intergenic 60.0%
CTGTGCCCCCTCCAACTGTA+TGG - chr7_3:6148646-6148665 None:intergenic 60.0%
! CATACAGTTGGAGGGGGCAC+AGG + chr7_3:6148644-6148663 Msa1091030:intron 60.0%
! CACCTCCACCCCACGGATTA+TGG - chr7_3:6148814-6148833 None:intergenic 60.0%
TGGTGGCTCGATCAAGCGGT+CGG - chr7_3:6150825-6150844 None:intergenic 60.0%
TCAGCGCCAACACCATGCTG+AGG - chr7_3:6150901-6150920 None:intergenic 60.0%
! GCACCGGTGGAGAGAATTGC+CGG + chr7_3:6150964-6150983 Msa1091030:CDS 60.0%
CACCGGTGGAGAGAATTGCC+GGG + chr7_3:6150965-6150984 Msa1091030:CDS 60.0%
ACCGGTGGAGAGAATTGCCG+GGG + chr7_3:6150966-6150985 Msa1091030:CDS 60.0%
AGGCATGGGAACATCAGCCC+CGG - chr7_3:6150986-6151005 None:intergenic 60.0%
GGGGAGAAGAGAGGAGGGAG+AGG + chr7_3:6147088-6147107 Msa1091030:intron 65.0%
GGGAGAGGAGAGAGAGGGAG+AGG + chr7_3:6147103-6147122 Msa1091030:intron 65.0%
!! GGACCCAATGGTGCTGCTGC+TGG + chr7_3:6149727-6149746 Msa1091030:CDS 65.0%
GCCCCGGCAATTCTCTCCAC+CGG - chr7_3:6150970-6150989 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 6143592 6151862 6143592 ID=Msa1091030;Name=Msa1091030
chr7_3 mRNA 6143592 6151862 6143592 ID=Msa1091030-mRNA-1;Parent=Msa1091030;Name=Msa1091030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=262|1|1|1|1|1|14|662|361
chr7_3 exon 6143592 6143833 6143592 ID=Msa1091030-mRNA-1:exon:1850;Parent=Msa1091030-mRNA-1
chr7_3 exon 6144073 6144116 6144073 ID=Msa1091030-mRNA-1:exon:1851;Parent=Msa1091030-mRNA-1
chr7_3 exon 6144207 6144263 6144207 ID=Msa1091030-mRNA-1:exon:1852;Parent=Msa1091030-mRNA-1
chr7_3 exon 6144347 6144427 6144347 ID=Msa1091030-mRNA-1:exon:1853;Parent=Msa1091030-mRNA-1
chr7_3 exon 6146149 6146175 6146149 ID=Msa1091030-mRNA-1:exon:1854;Parent=Msa1091030-mRNA-1
chr7_3 exon 6146282 6146344 6146282 ID=Msa1091030-mRNA-1:exon:1855;Parent=Msa1091030-mRNA-1
chr7_3 exon 6147929 6148015 6147929 ID=Msa1091030-mRNA-1:exon:1856;Parent=Msa1091030-mRNA-1
chr7_3 exon 6149646 6149771 6149646 ID=Msa1091030-mRNA-1:exon:1857;Parent=Msa1091030-mRNA-1
chr7_3 exon 6149921 6150054 6149921 ID=Msa1091030-mRNA-1:exon:1858;Parent=Msa1091030-mRNA-1
chr7_3 exon 6150166 6150238 6150166 ID=Msa1091030-mRNA-1:exon:1859;Parent=Msa1091030-mRNA-1
chr7_3 exon 6150345 6150410 6150345 ID=Msa1091030-mRNA-1:exon:1860;Parent=Msa1091030-mRNA-1
chr7_3 exon 6150669 6150707 6150669 ID=Msa1091030-mRNA-1:exon:1861;Parent=Msa1091030-mRNA-1
chr7_3 exon 6150802 6151041 6150802 ID=Msa1091030-mRNA-1:exon:1862;Parent=Msa1091030-mRNA-1
chr7_3 exon 6151132 6151862 6151132 ID=Msa1091030-mRNA-1:exon:1863;Parent=Msa1091030-mRNA-1
chr7_3 five_prime_UTR 6143592 6143833 6143592 ID=Msa1091030-mRNA-1:five_prime_utr;Parent=Msa1091030-mRNA-1
chr7_3 five_prime_UTR 6144073 6144092 6144073 ID=Msa1091030-mRNA-1:five_prime_utr;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6144093 6144116 6144093 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6144207 6144263 6144207 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6144347 6144427 6144347 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6146149 6146175 6146149 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6146282 6146344 6146282 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6147929 6148015 6147929 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6149646 6149771 6149646 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6149921 6150054 6149921 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6150166 6150238 6150166 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6150345 6150410 6150345 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6150669 6150707 6150669 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6150802 6151041 6150802 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 CDS 6151132 6151200 6151132 ID=Msa1091030-mRNA-1:cds;Parent=Msa1091030-mRNA-1
chr7_3 three_prime_UTR 6151201 6151862 6151201 ID=Msa1091030-mRNA-1:three_prime_utr;Parent=Msa1091030-mRNA-1
Gene Sequence

>Msa1091030

ATGTTAGGTGTTATAAGAAACAAGAATCTTCTTCGGCCTTCCTTTTCCGCATTCAGACATCTCTCTTCTTCCGCTAAACAGATGACAGTGAGAGATGCTCTTAATTCAGCTCTTGATGAAGAAATGTCCGCCGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGAGAATATCAAGGTGCATACAAGATTTCCAAGGGACTATTGGAGAAGTATGGTCCTGAGAGGGTTCTCGACACTCCCATCACTGAGGCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTAAAGCCTGTTGTGGAGTTTATGACATTTAACTTCTCCATGCAGGCAATAGATCACATCATTAATTCTGCTGCAAAATCAAATTACATGTCTGCTGGGCAAATAAATGTACCTATTGTATTTAGAGGACCCAATGGTGCTGCTGCTGGTGTTGGTGCTCAGCACTCTCATTGTTATGCATCTTGGTATGGCTCATGCCCTGGGTTGAAAGTTTTGGCACCATATTCATCTGAAGATGCTCGTGGTTTACTTAAAGCTGCTATAAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTACTATATGGTGAGTCATTCCCTGTTTCTGCCGAAGTTCTTGATTCCAGTTTCTGCCTTCCCATCGGAAAAGCAAAGATTGAGAGAGAAGGGAAAGATGTGACTATTACAGCCTTCTCAAAAATGGTTGGCTTTGCTCTAAAGGCTGCTGAGACACTAGCAAAGGAAGGAATCAGTGCTGAGGTTATTAATTTAAGGTCAATCCGACCGCTTGATCGAGCCACCATCAATGCTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGCGCTGAAATCTGTGCATCTGTCATCGAGGAGAGTTTTGGCTATCTTGATGCACCGGTGGAGAGAATTGCCGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGATTGGCTGTCCCACAGATTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCCACAGATCTGTGCCTATGGCTGCAACTGCCTAA

Protein sequence

>Msa1091030

MLGVIRNKNLLRPSFSAFRHLSSSAKQMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSHCYASWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGFALKAAETLAKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERLAVPQIEDIVRAAKRACHRSVPMAATA*