Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1092050 | XP_024636626.1 | 90.541 | 222 | 13 | 1 | 4 | 217 | 36 | 257 | 4.84e-141 | 405 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1092050 | sp|Q8RYD1|REM16_ARATH | 47.917 | 96 | 41 | 3 | 4 | 90 | 38 | 133 | 6.66e-20 | 89.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1092050 | A0A396JGK5 | 90.541 | 222 | 13 | 1 | 4 | 217 | 36 | 257 | 2.31e-141 | 405 |
Gene ID | Type | Classification |
---|---|---|
Msa1092050 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017510 | Msa1092050 | 0.803875 | 2.829644e-49 | -8.615850e-47 |
Msa0641360 | Msa1092050 | 0.828069 | 1.103383e-54 | -8.615850e-47 |
Msa0657970 | Msa1092050 | 0.813477 | 2.509630e-51 | -8.615850e-47 |
Msa0157290 | Msa1092050 | 0.803750 | 3.003394e-49 | -8.615850e-47 |
Msa0200260 | Msa1092050 | 0.810102 | 1.361721e-50 | -8.615850e-47 |
Msa0398710 | Msa1092050 | 0.801105 | 1.053440e-48 | -8.615850e-47 |
Msa1082500 | Msa1092050 | 0.808293 | 3.326076e-50 | -8.615850e-47 |
Msa0287650 | Msa1092050 | 0.802306 | 5.972317e-49 | -8.615850e-47 |
Msa0880140 | Msa1092050 | 0.802173 | 6.362185e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1092050 | MtrunA17_Chr1g0154241 | 90.541 | 222 | 13 | 1 | 4 | 217 | 36 | 257 | 4.45e-145 | 405 |
Msa1092050 | MtrunA17_Chr1g0154101 | 58.801 | 267 | 55 | 6 | 4 | 216 | 197 | 462 | 4.82e-88 | 276 |
Msa1092050 | MtrunA17_Chr1g0154101 | 70.161 | 124 | 29 | 1 | 4 | 119 | 40 | 163 | 4.30e-52 | 179 |
Msa1092050 | MtrunA17_Chr1g0154211 | 61.607 | 224 | 69 | 4 | 4 | 216 | 37 | 254 | 4.16e-86 | 260 |
Msa1092050 | MtrunA17_Chr1g0154251 | 57.269 | 227 | 75 | 6 | 4 | 209 | 41 | 266 | 5.54e-75 | 234 |
Msa1092050 | MtrunA17_Chr1g0154111 | 59.009 | 222 | 54 | 5 | 4 | 216 | 41 | 234 | 1.64e-73 | 233 |
Msa1092050 | MtrunA17_Chr1g0154111 | 58.636 | 220 | 70 | 7 | 4 | 217 | 368 | 572 | 1.18e-69 | 223 |
Msa1092050 | MtrunA17_Chr1g0154191 | 57.333 | 225 | 45 | 6 | 4 | 216 | 37 | 222 | 5.44e-71 | 220 |
Msa1092050 | MtrunA17_Chr1g0154151 | 52.423 | 227 | 53 | 6 | 1 | 216 | 16 | 198 | 2.42e-64 | 202 |
Msa1092050 | MtrunA17_Chr1g0154171 | 54.464 | 224 | 53 | 6 | 4 | 216 | 37 | 222 | 1.73e-60 | 193 |
Msa1092050 | MtrunA17_Chr1g0154131 | 51.961 | 204 | 38 | 5 | 4 | 198 | 197 | 349 | 1.63e-53 | 178 |
Msa1092050 | MtrunA17_Chr1g0154131 | 66.400 | 125 | 34 | 1 | 4 | 120 | 40 | 164 | 5.43e-50 | 169 |
Msa1092050 | MtrunA17_Chr1g0154161 | 73.333 | 105 | 19 | 2 | 4 | 100 | 45 | 148 | 9.28e-45 | 151 |
Msa1092050 | MtrunA17_Chr1g0154071 | 65.289 | 121 | 34 | 2 | 4 | 116 | 170 | 290 | 3.95e-44 | 154 |
Msa1092050 | MtrunA17_Chr1g0154071 | 69.307 | 101 | 23 | 2 | 4 | 96 | 42 | 142 | 2.12e-40 | 144 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1092050 | AT4G33280.2 | 47.917 | 96 | 41 | 3 | 4 | 90 | 38 | 133 | 3.23e-21 | 89.4 |
Msa1092050 | AT4G33280.1 | 47.917 | 96 | 41 | 3 | 4 | 90 | 38 | 133 | 6.77e-21 | 89.4 |
Msa1092050 | AT4G33280.3 | 47.917 | 96 | 41 | 3 | 4 | 90 | 38 | 133 | 1.00e-20 | 89.7 |
Msa1092050 | AT4G34400.2 | 37.681 | 69 | 43 | 0 | 4 | 72 | 30 | 98 | 9.45e-13 | 66.6 |
Msa1092050 | AT4G34400.1 | 37.681 | 69 | 43 | 0 | 4 | 72 | 30 | 98 | 9.45e-13 | 66.6 |
Msa1092050 | AT3G06220.1 | 28.829 | 111 | 61 | 2 | 5 | 106 | 25 | 126 | 1.01e-12 | 64.3 |
Msa1092050 | AT3G06160.5 | 27.500 | 160 | 94 | 4 | 4 | 162 | 24 | 162 | 1.77e-11 | 62.8 |
Msa1092050 | AT3G06160.4 | 27.500 | 160 | 94 | 4 | 4 | 162 | 24 | 162 | 1.77e-11 | 62.8 |
Msa1092050 | AT3G06160.3 | 27.500 | 160 | 94 | 4 | 4 | 162 | 24 | 162 | 1.77e-11 | 62.8 |
Msa1092050 | AT3G06160.1 | 27.500 | 160 | 94 | 4 | 4 | 162 | 39 | 177 | 2.06e-11 | 62.8 |
Msa1092050 | AT3G06160.2 | 27.500 | 160 | 94 | 4 | 4 | 162 | 83 | 221 | 2.57e-11 | 62.4 |
Find 50 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACTCCACTAGGCCCTTTA+AGG | 0.157742 | 7_3:+8100265 | None:intergenic |
CCTGAAAATGTGACCCTTAA+AGG | 0.182662 | 7_3:-8100279 | Msa1092050:CDS |
GCTGGTCTTCCCCGCTTCTT+AGG | 0.270434 | 7_3:+8099741 | None:intergenic |
AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 7_3:-8100252 | Msa1092050:CDS |
CCCGCTTTCTCGCATATATA+AGG | 0.321213 | 7_3:+8100086 | None:intergenic |
AACTTCGTTAACAGGCTTCT+TGG | 0.341598 | 7_3:+8099776 | None:intergenic |
CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 7_3:+8099768 | None:intergenic |
GTCTTCCCCGCTTCTTAGGC+TGG | 0.353235 | 7_3:+8099745 | None:intergenic |
AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 7_3:-8099950 | Msa1092050:CDS |
CCCCGCTTCTTAGGCTGGCC+AGG | 0.381562 | 7_3:+8099750 | None:intergenic |
CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 7_3:-8099723 | Msa1092050:CDS |
CTGAAAATGTGACCCTTAAA+GGG | 0.403312 | 7_3:-8100278 | Msa1092050:CDS |
GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 7_3:-8100251 | Msa1092050:CDS |
TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 7_3:-8100056 | Msa1092050:CDS |
GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 7_3:+8099840 | None:intergenic |
TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 7_3:-8099853 | Msa1092050:CDS |
GCGAGAAAGCAATTGTTGAT+TGG | 0.450466 | 7_3:-8099701 | Msa1092050:CDS |
GACATTGTTTACTTCACAAA+CGG | 0.457173 | 7_3:-8100213 | Msa1092050:CDS |
TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 7_3:-8099847 | Msa1092050:CDS |
GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 7_3:-8099981 | Msa1092050:CDS |
GCCTGGCCAGCCTAAGAAGC+GGG | 0.466869 | 7_3:-8099751 | Msa1092050:CDS |
TCTTACTTTGTTAGAAAATG+TGG | 0.473474 | 7_3:-8100062 | Msa1092050:CDS |
CGAGAAAGCAATTGTTGATT+GGG | 0.485091 | 7_3:-8099700 | Msa1092050:CDS |
GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 7_3:-8099807 | Msa1092050:CDS |
AACTCCACTAGGCCCTTTAA+GGG | 0.492023 | 7_3:+8100266 | None:intergenic |
TACTTCACAAACGGTTGGCA+AGG | 0.517034 | 7_3:-8100204 | Msa1092050:CDS |
CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 7_3:-8099768 | Msa1092050:CDS |
AATGAAAAGACTTATAATGC+TGG | 0.548214 | 7_3:-8099879 | Msa1092050:CDS |
ATATTCCACACAACTCCACT+AGG | 0.554654 | 7_3:+8100255 | None:intergenic |
ACCTTATATATGCGAGAAAG+CGG | 0.555289 | 7_3:-8100087 | Msa1092050:CDS |
TTGTTTACTTCACAAACGGT+TGG | 0.559837 | 7_3:-8100209 | Msa1092050:CDS |
CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 7_3:+8099841 | None:intergenic |
CGCCTGGCCAGCCTAAGAAG+CGG | 0.563693 | 7_3:-8099752 | Msa1092050:CDS |
GAAAGCAATTGTTGATTGGG+TGG | 0.568458 | 7_3:-8099697 | Msa1092050:CDS |
AATCACTCTCTTTCAAAGAG+TGG | 0.568664 | 7_3:+8100169 | None:intergenic |
CCTTATATATGCGAGAAAGC+GGG | 0.572083 | 7_3:-8100086 | Msa1092050:CDS |
TATAGGGCTGACAACTAAAG+AGG | 0.573508 | 7_3:-8100235 | Msa1092050:CDS |
GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 7_3:-8099826 | Msa1092050:CDS |
TACTGAGCAAGAGGGAGACA+AGG | 0.597506 | 7_3:-8100030 | Msa1092050:CDS |
AAAAGGTCATACTGAGCAAG+AGG | 0.610370 | 7_3:-8100039 | Msa1092050:CDS |
AAGGGCCTAGTGGAGTTGTG+TGG | 0.623981 | 7_3:-8100260 | Msa1092050:CDS |
GTGACCCTTAAAGGGCCTAG+TGG | 0.625534 | 7_3:-8100270 | Msa1092050:CDS |
GCTTGTAGCAAGGAAAACTC+AGG | 0.631925 | 7_3:-8099675 | Msa1092050:CDS |
CCTGGCCAGCCTAAGAAGCG+GGG | 0.640983 | 7_3:-8099750 | Msa1092050:CDS |
GCAAGAGGGAGACAAGGCAA+AGG | 0.642426 | 7_3:-8100024 | Msa1092050:CDS |
GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 7_3:-8099978 | Msa1092050:CDS |
TGATTGGGTGGCTTGTAGCA+AGG | 0.654638 | 7_3:-8099685 | Msa1092050:CDS |
TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 7_3:-8099966 | Msa1092050:CDS |
AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 7_3:-8100038 | Msa1092050:CDS |
ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 7_3:+8099842 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTGAAGATTTAATATTTCA+TGG | - | chr7_3:8099941-8099960 | Msa1092050:CDS | 15.0% |
!! | ATGTTTATACATTTATTTGC+AGG | - | chr7_3:8099712-8099731 | Msa1092050:CDS | 20.0% |
!!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr7_3:8099743-8099762 | None:intergenic | 20.0% |
!!! | TTTTCATTGGTATTTTCAAA+AGG | + | chr7_3:8100164-8100183 | None:intergenic | 20.0% |
!!! | TTCCTTTTTTTCAAGTACAA+TGG | - | chr7_3:8099908-8099927 | Msa1092050:CDS | 25.0% |
! | TCTTACTTTGTTAGAAAATG+TGG | - | chr7_3:8099993-8100012 | Msa1092050:CDS | 25.0% |
! | TTTGTTAGAAAATGTGGAAA+AGG | - | chr7_3:8099999-8100018 | Msa1092050:CDS | 25.0% |
!! | AGCATTATAAGTCTTTTCAT+TGG | + | chr7_3:8100177-8100196 | None:intergenic | 25.0% |
! | AATGAAAAGACTTATAATGC+TGG | - | chr7_3:8100176-8100195 | Msa1092050:CDS | 25.0% |
GACATTGTTTACTTCACAAA+CGG | - | chr7_3:8099842-8099861 | Msa1092050:CDS | 30.0% | |
!! | TTTTCAAAAGGTACAGCTAA+TGG | + | chr7_3:8100152-8100171 | None:intergenic | 30.0% |
CTGAAAATGTGACCCTTAAA+GGG | - | chr7_3:8099777-8099796 | Msa1092050:CDS | 35.0% | |
TTGTTTACTTCACAAACGGT+TGG | - | chr7_3:8099846-8099865 | Msa1092050:CDS | 35.0% | |
AATCACTCTCTTTCAAAGAG+TGG | + | chr7_3:8099889-8099908 | None:intergenic | 35.0% | |
CGCCATTGTACTTGAAAAAA+AGG | + | chr7_3:8099913-8099932 | None:intergenic | 35.0% | |
ACCTTATATATGCGAGAAAG+CGG | - | chr7_3:8099968-8099987 | Msa1092050:CDS | 35.0% | |
!! | AATGCGGTTCTGAGAAATTT+CGG | - | chr7_3:8100105-8100124 | Msa1092050:intron | 35.0% |
! | CGAGAAAGCAATTGTTGATT+GGG | - | chr7_3:8100355-8100374 | Msa1092050:intron | 35.0% |
!! | CCTTTAAGGGTCACATTTTC+AGG | + | chr7_3:8099779-8099798 | None:intergenic | 40.0% |
CCTGAAAATGTGACCCTTAA+AGG | - | chr7_3:8099776-8099795 | Msa1092050:CDS | 40.0% | |
ATATTCCACACAACTCCACT+AGG | + | chr7_3:8099803-8099822 | None:intergenic | 40.0% | |
AGTGGAGTTGTGTGGAATAT+AGG | - | chr7_3:8099803-8099822 | Msa1092050:CDS | 40.0% | |
GTGGAGTTGTGTGGAATATA+GGG | - | chr7_3:8099804-8099823 | Msa1092050:CDS | 40.0% | |
TATAGGGCTGACAACTAAAG+AGG | - | chr7_3:8099820-8099839 | Msa1092050:CDS | 40.0% | |
CCTTATATATGCGAGAAAGC+GGG | - | chr7_3:8099969-8099988 | Msa1092050:CDS | 40.0% | |
AAAAGGTCATACTGAGCAAG+AGG | - | chr7_3:8100016-8100035 | Msa1092050:CDS | 40.0% | |
AAAGGTCATACTGAGCAAGA+GGG | - | chr7_3:8100017-8100036 | Msa1092050:CDS | 40.0% | |
GAAGTCAACACTGCTTCTAA+TGG | - | chr7_3:8100074-8100093 | Msa1092050:CDS | 40.0% | |
AACTTCGTTAACAGGCTTCT+TGG | + | chr7_3:8100282-8100301 | None:intergenic | 40.0% | |
GCGAGAAAGCAATTGTTGAT+TGG | - | chr7_3:8100354-8100373 | Msa1092050:intron | 40.0% | |
! | GAAAGCAATTGTTGATTGGG+TGG | - | chr7_3:8100358-8100377 | Msa1092050:intron | 40.0% |
AACTCCACTAGGCCCTTTAA+GGG | + | chr7_3:8099792-8099811 | None:intergenic | 45.0% | |
TACTTCACAAACGGTTGGCA+AGG | - | chr7_3:8099851-8099870 | Msa1092050:CDS | 45.0% | |
CCCGCTTTCTCGCATATATA+AGG | + | chr7_3:8099972-8099991 | None:intergenic | 45.0% | |
GTCAACACTGCTTCTAATGG+CGG | - | chr7_3:8100077-8100096 | Msa1092050:CDS | 45.0% | |
! | TCTAATGGCGGTGTTGAATG+CGG | - | chr7_3:8100089-8100108 | Msa1092050:CDS | 45.0% |
!! | TTTTTGCCGGTTGTTTGGGA+GGG | + | chr7_3:8100257-8100276 | None:intergenic | 45.0% |
!! | GGTCTTTTTGCCGGTTGTTT+GGG | + | chr7_3:8100261-8100280 | None:intergenic | 45.0% |
!! | TGGTCTTTTTGCCGGTTGTT+TGG | + | chr7_3:8100262-8100281 | None:intergenic | 45.0% |
!! | AGGCTTCTTGGTCTTTTTGC+CGG | + | chr7_3:8100270-8100289 | None:intergenic | 45.0% |
!! | CCAGAAGTAGCTGATTTTGC+TGG | + | chr7_3:8100335-8100354 | None:intergenic | 45.0% |
CCAGCAAAATCAGCTACTTC+TGG | - | chr7_3:8100332-8100351 | Msa1092050:intron | 45.0% | |
GCTTGTAGCAAGGAAAACTC+AGG | - | chr7_3:8100380-8100399 | Msa1092050:intron | 45.0% | |
CAACTCCACTAGGCCCTTTA+AGG | + | chr7_3:8099793-8099812 | None:intergenic | 50.0% | |
TACTGAGCAAGAGGGAGACA+AGG | - | chr7_3:8100025-8100044 | Msa1092050:CDS | 50.0% | |
GGCTGATGCAGTCACTATTG+CGG | - | chr7_3:8100229-8100248 | Msa1092050:CDS | 50.0% | |
!! | CTTTTTGCCGGTTGTTTGGG+AGG | + | chr7_3:8100258-8100277 | None:intergenic | 50.0% |
CCAGGCGTAACTTCGTTAAC+AGG | + | chr7_3:8100290-8100309 | None:intergenic | 50.0% | |
CCTGTTAACGAAGTTACGCC+TGG | - | chr7_3:8100287-8100306 | Msa1092050:CDS | 50.0% | |
! | TGATTGGGTGGCTTGTAGCA+AGG | - | chr7_3:8100370-8100389 | Msa1092050:intron | 50.0% |
GTGACCCTTAAAGGGCCTAG+TGG | - | chr7_3:8099785-8099804 | Msa1092050:CDS | 55.0% | |
AAGGGCCTAGTGGAGTTGTG+TGG | - | chr7_3:8099795-8099814 | Msa1092050:CDS | 55.0% | |
GCAAGAGGGAGACAAGGCAA+AGG | - | chr7_3:8100031-8100050 | Msa1092050:CDS | 55.0% | |
ATCAGCCATGACCTGCTCAG+GGG | + | chr7_3:8100216-8100235 | None:intergenic | 55.0% | |
CATCAGCCATGACCTGCTCA+GGG | + | chr7_3:8100217-8100236 | None:intergenic | 55.0% | |
TGAGTCTGCTTCCCCTGAGC+AGG | - | chr7_3:8100202-8100221 | Msa1092050:CDS | 60.0% | |
TGCTTCCCCTGAGCAGGTCA+TGG | - | chr7_3:8100208-8100227 | Msa1092050:CDS | 60.0% | |
GCATCAGCCATGACCTGCTC+AGG | + | chr7_3:8100218-8100237 | None:intergenic | 60.0% | |
GCGGTTCCCTCCCAAACAAC+CGG | - | chr7_3:8100248-8100267 | Msa1092050:CDS | 60.0% | |
GTCTTCCCCGCTTCTTAGGC+TGG | + | chr7_3:8100313-8100332 | None:intergenic | 60.0% | |
!! | GCTGGTCTTCCCCGCTTCTT+AGG | + | chr7_3:8100317-8100336 | None:intergenic | 60.0% |
CGCCTGGCCAGCCTAAGAAG+CGG | - | chr7_3:8100303-8100322 | Msa1092050:CDS | 65.0% | |
GCCTGGCCAGCCTAAGAAGC+GGG | - | chr7_3:8100304-8100323 | Msa1092050:CDS | 65.0% | |
CCTGGCCAGCCTAAGAAGCG+GGG | - | chr7_3:8100305-8100324 | Msa1092050:CDS | 65.0% | |
! | CCCCGCTTCTTAGGCTGGCC+AGG | + | chr7_3:8100308-8100327 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 8099671 | 8100406 | 8099671 | ID=Msa1092050;Name=Msa1092050 |
chr7_3 | mRNA | 8099671 | 8100406 | 8099671 | ID=Msa1092050-mRNA-1;Parent=Msa1092050;Name=Msa1092050-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.66|0.5|0.33|3|0|217 |
chr7_3 | exon | 8100398 | 8100406 | 8100398 | ID=Msa1092050-mRNA-1:exon:2423;Parent=Msa1092050-mRNA-1 |
chr7_3 | exon | 8100138 | 8100343 | 8100138 | ID=Msa1092050-mRNA-1:exon:2422;Parent=Msa1092050-mRNA-1 |
chr7_3 | exon | 8099671 | 8100109 | 8099671 | ID=Msa1092050-mRNA-1:exon:2421;Parent=Msa1092050-mRNA-1 |
chr7_3 | CDS | 8100398 | 8100406 | 8100398 | ID=Msa1092050-mRNA-1:cds;Parent=Msa1092050-mRNA-1 |
chr7_3 | CDS | 8100138 | 8100343 | 8100138 | ID=Msa1092050-mRNA-1:cds;Parent=Msa1092050-mRNA-1 |
chr7_3 | CDS | 8099671 | 8100109 | 8099671 | ID=Msa1092050-mRNA-1:cds;Parent=Msa1092050-mRNA-1 |
Gene Sequence |
Protein sequence |