AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398710 MtrunA17_Chr3g0134331 77.989 368 9 3 1 350 1 314 0.0 543
Msa0398710 MtrunA17_Chr4g0053451 41.713 362 116 7 2 330 6 305 3.07e-76 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398710 AT1G02740.1 42.462 325 113 3 33 336 52 323 9.22e-82 252
Msa0398710 AT4G37280.1 39.181 342 121 5 33 341 29 316 7.11e-75 234

Find 67 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACGATCCACGAGGCTTTC+TGG 0.172555 3_2:-20706899 None:intergenic
TGCTGTTCTCAACATCTTCT+TGG 0.245431 3_2:-20710337 None:intergenic
TAGGAGGTGTTCTTTGTTGC+TGG 0.251794 3_2:+20706201 Msa0398710:five_prime_UTR
CACCTAGTGCTACTGTGTTT+TGG 0.283542 3_2:-20706278 None:intergenic
AAGGGAGAGAAACTATTTAA+AGG 0.289039 3_2:+20710512 Msa0398710:three_prime_UTR
CATAAGTGTCTTAGCTCTTA+AGG 0.290922 3_2:+20709785 Msa0398710:CDS
AATTGCTTCTTTAGTGTTAG+TGG 0.314127 3_2:-20708718 None:intergenic
GAGCATTTGTTACGTCTCTT+TGG 0.315634 3_2:+20709683 Msa0398710:CDS
AACATCCGTATTTCCATAAC+AGG 0.319709 3_2:-20709859 None:intergenic
TATCGTTTGGACAAGCTTCT+TGG 0.319781 3_2:-20709634 None:intergenic
TTGAATATGTCGTTCACATT+AGG 0.321893 3_2:-20708968 None:intergenic
CTTGCACTTGATGAGAAATA+TGG 0.334212 3_2:+20706862 Msa0398710:CDS
CACAAATACTTGACTTTCTC+AGG 0.343256 3_2:+20710138 Msa0398710:CDS
AAGAAGAACTAGAATGAAAA+TGG 0.345730 3_2:+20706303 Msa0398710:exon
TCAAGTGTTACTTGTAGTAT+TGG 0.370525 3_2:+20710467 Msa0398710:three_prime_UTR
GTTGCACTTGCACCCTGTTA+TGG 0.379206 3_2:+20709846 Msa0398710:CDS
TAGATTTAATTAGTTGTTCA+AGG 0.381785 3_2:+20710551 Msa0398710:three_prime_UTR
AAAGAATGATTCTCTGGTTA+AGG 0.387942 3_2:+20708398 Msa0398710:CDS
TTGTTCCATGCTAACATTGA+AGG 0.392194 3_2:+20710092 Msa0398710:CDS
TTTACTGCAGTTGGGATGAA+TGG 0.398180 3_2:+20706788 Msa0398710:intron
TAATTAGTTGTTCAAGGAAA+AGG 0.413446 3_2:+20710557 Msa0398710:three_prime_UTR
TTTGCAAAATGCTGGCCATT+TGG 0.416533 3_2:+20709893 Msa0398710:CDS
ATCGTTCCTTCTGCTATATA+TGG 0.417923 3_2:+20709656 Msa0398710:CDS
AGGAGGTGTTCTTTGTTGCT+GGG 0.420028 3_2:+20706202 Msa0398710:five_prime_UTR
TCCGTTTCTCCTTACGATGA+AGG 0.428559 3_2:+20706400 Msa0398710:CDS
GCAGAAGGAACGATATCGTT+TGG 0.430072 3_2:-20709647 None:intergenic
TATCTGACCATTCGAACTCT+TGG 0.433463 3_2:-20706920 None:intergenic
AGAATGCTTGTTACAAATGC+AGG 0.437753 3_2:+20710411 Msa0398710:three_prime_UTR
GATTACAGATTGAAGAAAAG+TGG 0.438131 3_2:+20709001 Msa0398710:CDS
TCTCTCCCTTAATCCTGAAA+AGG 0.451248 3_2:-20710499 None:intergenic
AAAACGAAAGAATGATTCTC+TGG 0.464533 3_2:+20708392 Msa0398710:CDS
TGCACCCTGTTATGGAAATA+CGG 0.466904 3_2:+20709854 Msa0398710:CDS
TCCTTTCATAATTTCTTCAA+CGG 0.472345 3_2:-20709546 None:intergenic
TCCTTCATCGTAAGGAGAAA+CGG 0.473763 3_2:-20706401 None:intergenic
CTTGGACATGATAAGAAGAA+AGG 0.478796 3_2:-20710319 None:intergenic
TTTGAGTTTATTACTCATCT+CGG 0.485685 3_2:+20708751 Msa0398710:CDS
CGACACATTGATAGAACTCC+AGG 0.487335 3_2:+20710115 Msa0398710:CDS
TTATTGTACAAGAGCATCAC+TGG 0.493203 3_2:-20709596 None:intergenic
TCCGTTGAAGAAATTATGAA+AGG 0.507459 3_2:+20709545 Msa0398710:CDS
TTACTGCAGTTGGGATGAAT+GGG 0.516086 3_2:+20706789 Msa0398710:intron
TTCTTGTCTTTATGAAGCCA+AGG 0.516398 3_2:+20706447 Msa0398710:CDS
ACTTTCTCTCCTTCATCGTA+AGG 0.528874 3_2:-20706409 None:intergenic
TGAATGTTGACAAGTTTGTC+CGG 0.531580 3_2:-20708691 None:intergenic
GAAAGTCAAGTATTTGTGCC+TGG 0.560002 3_2:-20710133 None:intergenic
TGTTATGGAAATACGGATGT+TGG 0.573911 3_2:+20709861 Msa0398710:CDS
TGCAAGTGCAACAATTAAGT+CGG 0.584029 3_2:-20709835 None:intergenic
TTAGCATGGAACAATAACTC+TGG 0.593094 3_2:-20710083 None:intergenic
GGATCGTCCAAGAGTTCGAA+TGG 0.602928 3_2:+20706913 Msa0398710:CDS
AAATGTAATGCAGTTGCAAG+AGG 0.606984 3_2:+20708366 Msa0398710:intron
TGTGTGAGGCTGATTCCAAA+TGG 0.612083 3_2:-20709908 None:intergenic
GAATGCTTGTTACAAATGCA+GGG 0.615375 3_2:+20710412 Msa0398710:three_prime_UTR
TGTCGCCTTCAATGTTAGCA+TGG 0.620025 3_2:-20710097 None:intergenic
TGCAGTTGGGATGAATGGGT+TGG 0.622269 3_2:+20706793 Msa0398710:intron
TTTGGAATCAGCCTCACACA+TGG 0.625253 3_2:+20709911 Msa0398710:CDS
TCAGCACCATATATAGCAGA+AGG 0.633177 3_2:-20709662 None:intergenic
GTTTATTACTCATCTCGGCA+AGG 0.637047 3_2:+20708756 Msa0398710:CDS
TTGGAATCAGCCTCACACAT+GGG 0.640684 3_2:+20709912 Msa0398710:CDS
ATAATATCACATAGCTTCTG+CGG 0.641242 3_2:+20710384 Msa0398710:exon
AACCAAAACACAGTAGCACT+AGG 0.647095 3_2:+20706276 Msa0398710:five_prime_UTR
CTTCATAAAGACAAGAAGTG+TGG 0.647600 3_2:-20706441 None:intergenic
TAGCAATAAACCCATGTGTG+AGG 0.649617 3_2:-20709922 None:intergenic
GAACTCTTGGACGATCCACG+AGG 0.665911 3_2:-20706907 None:intergenic
AACATACTGAGGAAAATATG+CGG 0.687491 3_2:+20706833 Msa0398710:CDS
AAGAATGCCAGAAAGCCTCG+TGG 0.700259 3_2:+20706892 Msa0398710:CDS
TCGTTCACATTAGGAGTACG+AGG 0.705008 3_2:-20708959 None:intergenic
TCGATTGATGAAACATACTG+AGG 0.706974 3_2:+20706822 Msa0398710:CDS
ACATCCGTATTTCCATAACA+GGG 0.747296 3_2:-20709858 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAATTTAACATGAT+TGG + chr3_2:20707460-20707479 Msa0398710:intron 10.0%
!! AATTTAAATTTAACATGATT+GGG + chr3_2:20707461-20707480 Msa0398710:intron 10.0%
!! TAATTTAACATAAAATTAAG+AGG - chr3_2:20710176-20710195 None:intergenic 10.0%
!!! TTGTTTAACCTATTAATTTT+CGG - chr3_2:20706547-20706566 None:intergenic 15.0%
!!! AAGTACTTTTTTTTTTTTGA+AGG - chr3_2:20707257-20707276 None:intergenic 15.0%
!!! ATGTGAATTGTATTTTTAAT+AGG - chr3_2:20707385-20707404 None:intergenic 15.0%
!! TATTAAAAATACAATTCACA+TGG + chr3_2:20707384-20707403 Msa0398710:intron 15.0%
!!! TTGTTATTAGTATTATTTTC+AGG + chr3_2:20707509-20707528 Msa0398710:intron 15.0%
!!! TGTTATTAGTATTATTTTCA+GGG + chr3_2:20707510-20707529 Msa0398710:intron 15.0%
!!! TATTTTAATTTCATATGCTT+TGG + chr3_2:20707750-20707769 Msa0398710:intron 15.0%
!!! TTTAAATTTTAATTTGTACC+AGG + chr3_2:20708432-20708451 Msa0398710:intron 15.0%
!! TATTTATTCAGTCAATATTT+AGG + chr3_2:20709306-20709325 Msa0398710:intron 15.0%
!! TTAAATGTTAAATTAGTCAT+TGG + chr3_2:20710212-20710231 Msa0398710:intron 15.0%
!!! ATTTTTTTTTGGAGTAAAGT+AGG + chr3_2:20706182-20706201 Msa0398710:five_prime_UTR 20.0%
!!! GTGTTTTGGTTTTTATTAAA+TGG - chr3_2:20706267-20706286 None:intergenic 20.0%
!! TATAGTGAAAATGTTGAATT+AGG - chr3_2:20706519-20706538 None:intergenic 20.0%
!! ATAGTATAAATAGTAGAGAT+AGG + chr3_2:20707016-20707035 Msa0398710:intron 20.0%
!! CATGTTAAATTTAAATTACG+AGG - chr3_2:20707458-20707477 None:intergenic 20.0%
!!! GTTATTAGTATTATTTTCAG+GGG + chr3_2:20707511-20707530 Msa0398710:intron 20.0%
!! AATGCCATAAAAAGTTTAAT+AGG - chr3_2:20707680-20707699 None:intergenic 20.0%
!!! TATATCCTTATCATTTTGTA+TGG - chr3_2:20707781-20707800 None:intergenic 20.0%
!!! AATTTTCTTTTGAGTTTGAA+TGG - chr3_2:20707885-20707904 None:intergenic 20.0%
!! ATTCAAACTCAAAAGAAAAT+TGG + chr3_2:20707884-20707903 Msa0398710:intron 20.0%
!! TTAGGAATGTAATCATTATA+GGG + chr3_2:20708046-20708065 Msa0398710:intron 20.0%
!! TTCTTTGTAGAAAAGATAAT+AGG + chr3_2:20708084-20708103 Msa0398710:intron 20.0%
!!! TTATTTTTCTTGTAGTTATG+TGG + chr3_2:20708272-20708291 Msa0398710:intron 20.0%
!! TATCATATATGATTATTTCC+TGG - chr3_2:20708453-20708472 None:intergenic 20.0%
!! ATAAACTATGTCAAATTAGT+CGG + chr3_2:20708518-20708537 Msa0398710:intron 20.0%
!!! TTACAACTTTTTTTGACTAT+AGG + chr3_2:20708612-20708631 Msa0398710:intron 20.0%
!!! TACAACTTTTTTTGACTATA+GGG + chr3_2:20708613-20708632 Msa0398710:intron 20.0%
!! ACTATAGGGTATAATATAAT+TGG + chr3_2:20708627-20708646 Msa0398710:intron 20.0%
!! TTTATTGTTTGCTTAATATC+AGG + chr3_2:20708651-20708670 Msa0398710:intron 20.0%
!!! TATATATCATTTTGGAGTAA+CGG + chr3_2:20709115-20709134 Msa0398710:intron 20.0%
!! ATCTAATTGTAAAAAGATTG+AGG - chr3_2:20709261-20709280 None:intergenic 20.0%
!!! AAGCTGTTATTTTAGAAAAA+GGG - chr3_2:20709287-20709306 None:intergenic 20.0%
!!! TAAGCTGTTATTTTAGAAAA+AGG - chr3_2:20709288-20709307 None:intergenic 20.0%
!! ATTACAGTTTAATTCTATGT+TGG + chr3_2:20709506-20709525 Msa0398710:intron 20.0%
!! TTTAATTCTATGTTGGATAT+AGG + chr3_2:20709513-20709532 Msa0398710:intron 20.0%
!! TAGATTTAATTAGTTGTTCA+AGG + chr3_2:20710551-20710570 Msa0398710:three_prime_UTR 20.0%
! AAGAAGAACTAGAATGAAAA+TGG + chr3_2:20706303-20706322 Msa0398710:exon 25.0%
! AAAGGAAATAAAAACGAGAA+AGG - chr3_2:20706480-20706499 None:intergenic 25.0%
!!! TCTCGTTTTTATTTCCTTTT+TGG + chr3_2:20706481-20706500 Msa0398710:intron 25.0%
! GGTTTAAATAAGAACCAAAA+AGG - chr3_2:20706498-20706517 None:intergenic 25.0%
! ATACTCTTCCGAAAATTAAT+AGG + chr3_2:20706536-20706555 Msa0398710:intron 25.0%
! TTGAATACAAACATAAACGA+TGG + chr3_2:20706568-20706587 Msa0398710:intron 25.0%
!!! TTTTGTTTTCGTAACTCTAA+GGG + chr3_2:20706655-20706674 Msa0398710:intron 25.0%
!!! ATTCAATTTTGGTTGTTTCA+GGG + chr3_2:20706678-20706697 Msa0398710:intron 25.0%
! TATGCATGCTATAAAAAACA+AGG - chr3_2:20706999-20707018 None:intergenic 25.0%
!!! GTTGTTTTCATAACCTATTT+TGG - chr3_2:20707153-20707172 None:intergenic 25.0%
! ATAAATTATATGGTCCTGTT+TGG - chr3_2:20707325-20707344 None:intergenic 25.0%
! ACAAGTTATTATCCAAAACT+TGG - chr3_2:20707555-20707574 None:intergenic 25.0%
!!! AGTTTTGGATAATAACTTGT+TGG + chr3_2:20707555-20707574 Msa0398710:intron 25.0%
!!! GTTTTGGATAATAACTTGTT+GGG + chr3_2:20707556-20707575 Msa0398710:intron 25.0%
! AAATGCCATCAAAAGTTAAT+AGG - chr3_2:20707624-20707643 None:intergenic 25.0%
!! TTGATGGCATTTGTATATAA+TGG + chr3_2:20707632-20707651 Msa0398710:intron 25.0%
!! ACCTCCTATTAAACTTTTTA+TGG + chr3_2:20707673-20707692 Msa0398710:intron 25.0%
! TTTATGGCATTTGTGTATAA+TGG + chr3_2:20707689-20707708 Msa0398710:intron 25.0%
! ATCTACCATACAAAATGATA+AGG + chr3_2:20707773-20707792 Msa0398710:intron 25.0%
! ACAAAATGATAAGGATATAG+AGG + chr3_2:20707782-20707801 Msa0398710:intron 25.0%
! CAAAATGATAAGGATATAGA+GGG + chr3_2:20707783-20707802 Msa0398710:intron 25.0%
! TAACAATTGTACTGTTGTAT+GGG + chr3_2:20707919-20707938 Msa0398710:intron 25.0%
! ATAGATAAGGATGTTATGAT+GGG + chr3_2:20707992-20708011 Msa0398710:intron 25.0%
! CTTAGGAATGTAATCATTAT+AGG + chr3_2:20708045-20708064 Msa0398710:intron 25.0%
! TAATCATTATAGGGAAAGTT+TGG + chr3_2:20708055-20708074 Msa0398710:intron 25.0%
! AATCATTATAGGGAAAGTTT+GGG + chr3_2:20708056-20708075 Msa0398710:intron 25.0%
!!! TAAACCAATCTAAGACATTT+TGG + chr3_2:20708340-20708359 Msa0398710:intron 25.0%
!!! AAACCAATCTAAGACATTTT+GGG + chr3_2:20708341-20708360 Msa0398710:intron 25.0%
! TTAATATCAGGAAAAACTTG+CGG + chr3_2:20708663-20708682 Msa0398710:intron 25.0%
!! TTTGAGTTTATTACTCATCT+CGG + chr3_2:20708751-20708770 Msa0398710:CDS 25.0%
! TTCAACACAAAGCTTAAATA+TGG - chr3_2:20709053-20709072 None:intergenic 25.0%
! TCCTTTCATAATTTCTTCAA+CGG - chr3_2:20709549-20709568 None:intergenic 25.0%
!! ACAAGATGGTTATTTCATTT+AGG + chr3_2:20709728-20709747 Msa0398710:intron 25.0%
!!! TTCTGTAAAGCTTTATTATC+CGG + chr3_2:20709999-20710018 Msa0398710:intron 25.0%
! AATGTTAAATTAGTCATTGG+TGG + chr3_2:20710215-20710234 Msa0398710:intron 25.0%
! TTCTGTAACTATCTATTTCA+TGG + chr3_2:20710261-20710280 Msa0398710:intron 25.0%
! TAATTAGTTGTTCAAGGAAA+AGG + chr3_2:20710557-20710576 Msa0398710:three_prime_UTR 25.0%
!!! TTTTTTTGGAGTAAAGTAGG+AGG + chr3_2:20706185-20706204 Msa0398710:five_prime_UTR 30.0%
!!! GTTTTGTTTTCGTAACTCTA+AGG + chr3_2:20706654-20706673 Msa0398710:intron 30.0%
!! AACTCTAAGGGATTCAATTT+TGG + chr3_2:20706667-20706686 Msa0398710:intron 30.0%
!!! GATTCAATTTTGGTTGTTTC+AGG + chr3_2:20706677-20706696 Msa0398710:intron 30.0%
AACATACTGAGGAAAATATG+CGG + chr3_2:20706833-20706852 Msa0398710:CDS 30.0%
TTTCAATGCTTTAACTACTC+AGG + chr3_2:20706948-20706967 Msa0398710:intron 30.0%
CATGCTATAAAAAACAAGGA+AGG - chr3_2:20706995-20707014 None:intergenic 30.0%
!! TTAGTATTATTTTCAGGGGA+AGG + chr3_2:20707515-20707534 Msa0398710:intron 30.0%
!! TAGTATTATTTTCAGGGGAA+GGG + chr3_2:20707516-20707535 Msa0398710:intron 30.0%
GCCATAAAAAGTTTAATAGG+AGG - chr3_2:20707677-20707696 None:intergenic 30.0%
! CTTAAGTGTTCAAACTCTTT+TGG - chr3_2:20707720-20707739 None:intergenic 30.0%
GACGAAATCAACGAATAATT+TGG + chr3_2:20707836-20707855 Msa0398710:intron 30.0%
GTAACAATTGTACTGTTGTA+TGG + chr3_2:20707918-20707937 Msa0398710:intron 30.0%
AACTCACTGTTTCATAGATA+AGG + chr3_2:20707979-20707998 Msa0398710:intron 30.0%
CATAGATAAGGATGTTATGA+TGG + chr3_2:20707991-20708010 Msa0398710:intron 30.0%
! AAGATAATAGGTATTGTCCT+AGG + chr3_2:20708096-20708115 Msa0398710:intron 30.0%
TAGTTATGTGGTAAAGTAAG+AGG + chr3_2:20708284-20708303 Msa0398710:intron 30.0%
TTTCCCAAAATGTCTTAGAT+TGG - chr3_2:20708347-20708366 None:intergenic 30.0%
AAAACGAAAGAATGATTCTC+TGG + chr3_2:20708392-20708411 Msa0398710:CDS 30.0%
AAAGAATGATTCTCTGGTTA+AGG + chr3_2:20708398-20708417 Msa0398710:CDS 30.0%
AATTGCTTCTTTAGTGTTAG+TGG - chr3_2:20708721-20708740 None:intergenic 30.0%
AATTGGCTGTAAAGAAAATG+AGG - chr3_2:20708839-20708858 None:intergenic 30.0%
!! CAATTTGATATAGCTTTGGA+CGG + chr3_2:20708854-20708873 Msa0398710:intron 30.0%
TTGAATATGTCGTTCACATT+AGG - chr3_2:20708971-20708990 None:intergenic 30.0%
GATTACAGATTGAAGAAAAG+TGG + chr3_2:20709001-20709020 Msa0398710:CDS 30.0%
ACACAAAGCTTAAATATGGA+GGG - chr3_2:20709049-20709068 None:intergenic 30.0%
AACACAAAGCTTAAATATGG+AGG - chr3_2:20709050-20709069 None:intergenic 30.0%
! TTTGAAAACAGTTTTCTGCT+TGG - chr3_2:20709194-20709213 None:intergenic 30.0%
ATTGGAACTTTCTATCAACT+GGG - chr3_2:20709341-20709360 None:intergenic 30.0%
TATTGGAACTTTCTATCAAC+TGG - chr3_2:20709342-20709361 None:intergenic 30.0%
TGAACACAAAAACAGATTTC+AGG - chr3_2:20709378-20709397 None:intergenic 30.0%
TCAATATAAGCAGAAAAACC+AGG - chr3_2:20709410-20709429 None:intergenic 30.0%
CATCACAAGTGGAAATATAA+AGG - chr3_2:20709480-20709499 None:intergenic 30.0%
GTAATAATAAGCATCACAAG+TGG - chr3_2:20709491-20709510 None:intergenic 30.0%
TCCGTTGAAGAAATTATGAA+AGG + chr3_2:20709545-20709564 Msa0398710:CDS 30.0%
ATGAAATAACCATCTTGTCT+GGG - chr3_2:20709726-20709745 None:intergenic 30.0%
AATGAAATAACCATCTTGTC+TGG - chr3_2:20709727-20709746 None:intergenic 30.0%
AAACACAAGTATTAGAAGTC+CGG - chr3_2:20710021-20710040 None:intergenic 30.0%
ATAATATCACATAGCTTCTG+CGG + chr3_2:20710384-20710403 Msa0398710:exon 30.0%
!! TCAAGTGTTACTTGTAGTAT+TGG + chr3_2:20710467-20710486 Msa0398710:three_prime_UTR 30.0%
! TTGGAAATGTAAACCTTTTC+AGG + chr3_2:20710486-20710505 Msa0398710:three_prime_UTR 30.0%
!! TGTAAACCTTTTCAGGATTA+AGG + chr3_2:20710493-20710512 Msa0398710:three_prime_UTR 30.0%
!! GTAAACCTTTTCAGGATTAA+GGG + chr3_2:20710494-20710513 Msa0398710:three_prime_UTR 30.0%
AAGGGAGAGAAACTATTTAA+AGG + chr3_2:20710512-20710531 Msa0398710:three_prime_UTR 30.0%
!!! TGTTGCTGGGTTTTGTTAAT+TGG + chr3_2:20706215-20706234 Msa0398710:five_prime_UTR 35.0%
CTTCATAAAGACAAGAAGTG+TGG - chr3_2:20706444-20706463 None:intergenic 35.0%
TTCTTGTCTTTATGAAGCCA+AGG + chr3_2:20706447-20706466 Msa0398710:CDS 35.0%
AGTTACGAAAACAAAACGAG+AGG - chr3_2:20706651-20706670 None:intergenic 35.0%
!!! AATTTTGGTTGTTTCAGGGT+TGG + chr3_2:20706682-20706701 Msa0398710:intron 35.0%
TTGATTGTGTTGAGAACTGT+GGG + chr3_2:20706739-20706758 Msa0398710:intron 35.0%
!!! ACTGTGGGTTTTGATTTGTT+AGG + chr3_2:20706754-20706773 Msa0398710:intron 35.0%
!!! CTGTGGGTTTTGATTTGTTA+GGG + chr3_2:20706755-20706774 Msa0398710:intron 35.0%
! TTTGTGTGTTTTACTGCAGT+TGG + chr3_2:20706779-20706798 Msa0398710:intron 35.0%
! TTGTGTGTTTTACTGCAGTT+GGG + chr3_2:20706780-20706799 Msa0398710:intron 35.0%
TCGATTGATGAAACATACTG+AGG + chr3_2:20706822-20706841 Msa0398710:CDS 35.0%
CTTGCACTTGATGAGAAATA+TGG + chr3_2:20706862-20706881 Msa0398710:CDS 35.0%
! CGAATGTTTTGTAGAGCTTA+TGG + chr3_2:20707074-20707093 Msa0398710:intron 35.0%
TTTCGTAAGCTCTCCAAAAT+AGG + chr3_2:20707137-20707156 Msa0398710:intron 35.0%
ACATGATTGGGCGAATTAAT+TGG + chr3_2:20707473-20707492 Msa0398710:intron 35.0%
! TATCCATCTTCTCCAAGTTT+TGG + chr3_2:20707540-20707559 Msa0398710:intron 35.0%
TATCCAAAACTTGGAGAAGA+TGG - chr3_2:20707546-20707565 None:intergenic 35.0%
! GACCTCCTATTAACTTTTGA+TGG + chr3_2:20707616-20707635 Msa0398710:intron 35.0%
TGCCATCAAAAGTTAATAGG+AGG - chr3_2:20707621-20707640 None:intergenic 35.0%
AATAGGAGGTCAAACACATA+AGG - chr3_2:20707663-20707682 None:intergenic 35.0%
ATCTAGTCAAAGCTTCACAT+AGG - chr3_2:20708158-20708177 None:intergenic 35.0%
! TATGTGAAGCTTTGACTAGA+TGG + chr3_2:20708157-20708176 Msa0398710:intron 35.0%
! TAGTCCATATCTAGAGTTAG+AGG + chr3_2:20708184-20708203 Msa0398710:intron 35.0%
! AGTCCATATCTAGAGTTAGA+GGG + chr3_2:20708185-20708204 Msa0398710:intron 35.0%
GGTAAAGTAAGAGGACTTTA+TGG + chr3_2:20708293-20708312 Msa0398710:intron 35.0%
AAATGTAATGCAGTTGCAAG+AGG + chr3_2:20708366-20708385 Msa0398710:intron 35.0%
TGAATGTTGACAAGTTTGTC+CGG - chr3_2:20708694-20708713 None:intergenic 35.0%
CAGCCAATTTGATATAGCTT+TGG + chr3_2:20708850-20708869 Msa0398710:intron 35.0%
CGTCCAAAGCTATATCAAAT+TGG - chr3_2:20708856-20708875 None:intergenic 35.0%
! TTGAAATACTCCAGTCTTGT+GGG + chr3_2:20709068-20709087 Msa0398710:intron 35.0%
TTGGAACTTTCTATCAACTG+GGG - chr3_2:20709340-20709359 None:intergenic 35.0%
TAAGCAGAAAAACCAGGTAA+AGG - chr3_2:20709404-20709423 None:intergenic 35.0%
TATCAAAAACACAGCTGAAG+GGG - chr3_2:20709454-20709473 None:intergenic 35.0%
GTATCAAAAACACAGCTGAA+GGG - chr3_2:20709455-20709474 None:intergenic 35.0%
TGTATCAAAAACACAGCTGA+AGG - chr3_2:20709456-20709475 None:intergenic 35.0%
!! TTATTGTACAAGAGCATCAC+TGG - chr3_2:20709599-20709618 None:intergenic 35.0%
ATCGTTCCTTCTGCTATATA+TGG + chr3_2:20709656-20709675 Msa0398710:CDS 35.0%
!!! TATGCATGTGTTGTTTTGCA+AGG + chr3_2:20709753-20709772 Msa0398710:intron 35.0%
!!! ATGCATGTGTTGTTTTGCAA+GGG + chr3_2:20709754-20709773 Msa0398710:intron 35.0%
! CATAAGTGTCTTAGCTCTTA+AGG + chr3_2:20709785-20709804 Msa0398710:CDS 35.0%
TGCAAGTGCAACAATTAAGT+CGG - chr3_2:20709838-20709857 None:intergenic 35.0%
ACATCCGTATTTCCATAACA+GGG - chr3_2:20709861-20709880 None:intergenic 35.0%
AACATCCGTATTTCCATAAC+AGG - chr3_2:20709862-20709881 None:intergenic 35.0%
TGTTATGGAAATACGGATGT+TGG + chr3_2:20709861-20709880 Msa0398710:CDS 35.0%
!! AGAGTTGTTTTGCAAAATGC+TGG + chr3_2:20709885-20709904 Msa0398710:CDS 35.0%
TTAGCATGGAACAATAACTC+TGG - chr3_2:20710086-20710105 None:intergenic 35.0%
TTGTTCCATGCTAACATTGA+AGG + chr3_2:20710092-20710111 Msa0398710:CDS 35.0%
CACAAATACTTGACTTTCTC+AGG + chr3_2:20710138-20710157 Msa0398710:CDS 35.0%
AACTATCTATTTCATGGTGC+AGG + chr3_2:20710267-20710286 Msa0398710:intron 35.0%
CTTGGACATGATAAGAAGAA+AGG - chr3_2:20710322-20710341 None:intergenic 35.0%
! AGAATGCTTGTTACAAATGC+AGG + chr3_2:20710411-20710430 Msa0398710:three_prime_UTR 35.0%
! GAATGCTTGTTACAAATGCA+GGG + chr3_2:20710412-20710431 Msa0398710:three_prime_UTR 35.0%
AACCAAAACACAGTAGCACT+AGG + chr3_2:20706276-20706295 Msa0398710:five_prime_UTR 40.0%
TCCTTCATCGTAAGGAGAAA+CGG - chr3_2:20706404-20706423 None:intergenic 40.0%
ACTTTCTCTCCTTCATCGTA+AGG - chr3_2:20706412-20706431 None:intergenic 40.0%
GTTGATTGTGTTGAGAACTG+TGG + chr3_2:20706738-20706757 Msa0398710:intron 40.0%
TTTACTGCAGTTGGGATGAA+TGG + chr3_2:20706788-20706807 Msa0398710:intron 40.0%
TTACTGCAGTTGGGATGAAT+GGG + chr3_2:20706789-20706808 Msa0398710:intron 40.0%
TATCTGACCATTCGAACTCT+TGG - chr3_2:20706923-20706942 None:intergenic 40.0%
CCTGTTTGGATAAACAGCTA+AGG - chr3_2:20707311-20707330 None:intergenic 40.0%
CCTTAGCTGTTTATCCAAAC+AGG + chr3_2:20707308-20707327 Msa0398710:intron 40.0%
CTTCCATGTTCAACTTGTAG+AGG + chr3_2:20707355-20707374 Msa0398710:intron 40.0%
GCAAGACATTCACATTGTTC+AGG + chr3_2:20707423-20707442 Msa0398710:intron 40.0%
CATTCACATTGTTCAGGAAC+TGG + chr3_2:20707429-20707448 Msa0398710:intron 40.0%
TGGGCGAATTAATTGGTACT+TGG + chr3_2:20707480-20707499 Msa0398710:intron 40.0%
TTGATTTCGTCCACTCTAGT+TGG - chr3_2:20707827-20707846 None:intergenic 40.0%
! GATAAGGATGTTATGATGGG+TGG + chr3_2:20707995-20708014 Msa0398710:intron 40.0%
ACACAAGTCAAGATAGGCTT+AGG + chr3_2:20708028-20708047 Msa0398710:intron 40.0%
! GTCCATATCTAGAGTTAGAG+GGG + chr3_2:20708186-20708205 Msa0398710:intron 40.0%
! TCCATATCTAGAGTTAGAGG+GGG + chr3_2:20708187-20708206 Msa0398710:intron 40.0%
GTGAGTTTAGATCAGAAGTG+TGG - chr3_2:20708238-20708257 None:intergenic 40.0%
CATGAACTTCAAAGACGCAT+GGG - chr3_2:20708480-20708499 None:intergenic 40.0%
ACATGAACTTCAAAGACGCA+TGG - chr3_2:20708481-20708500 None:intergenic 40.0%
! CATGTTTTGTCCCTTGTATG+AGG + chr3_2:20708574-20708593 Msa0398710:intron 40.0%
GTTTATTACTCATCTCGGCA+AGG + chr3_2:20708756-20708775 Msa0398710:CDS 40.0%
GTTGAAATACTCCAGTCTTG+TGG + chr3_2:20709067-20709086 Msa0398710:intron 40.0%
ACACTTATTTCCCACAAGAC+TGG - chr3_2:20709081-20709100 None:intergenic 40.0%
CAAAAACAGATTTCAGGCAC+AGG - chr3_2:20709372-20709391 None:intergenic 40.0%
TTGTGTTCATGTCCTTTACC+TGG + chr3_2:20709389-20709408 Msa0398710:intron 40.0%
TATCGTTTGGACAAGCTTCT+TGG - chr3_2:20709637-20709656 None:intergenic 40.0%
TCAGCACCATATATAGCAGA+AGG - chr3_2:20709665-20709684 None:intergenic 40.0%
! GAGCATTTGTTACGTCTCTT+TGG + chr3_2:20709683-20709702 Msa0398710:CDS 40.0%
ATAACCATCTTGTCTGGGAA+GGG - chr3_2:20709721-20709740 None:intergenic 40.0%
AATAACCATCTTGTCTGGGA+AGG - chr3_2:20709722-20709741 None:intergenic 40.0%
TGCACCCTGTTATGGAAATA+CGG + chr3_2:20709854-20709873 Msa0398710:CDS 40.0%
TTTGCAAAATGCTGGCCATT+TGG + chr3_2:20709893-20709912 Msa0398710:CDS 40.0%
TAGCAATAAACCCATGTGTG+AGG - chr3_2:20709925-20709944 None:intergenic 40.0%
GAAAGTCAAGTATTTGTGCC+TGG - chr3_2:20710136-20710155 None:intergenic 40.0%
TGCTGTTCTCAACATCTTCT+TGG - chr3_2:20710340-20710359 None:intergenic 40.0%
TCTCTCCCTTAATCCTGAAA+AGG - chr3_2:20710502-20710521 None:intergenic 40.0%
!! TAGGAGGTGTTCTTTGTTGC+TGG + chr3_2:20706201-20706220 Msa0398710:five_prime_UTR 45.0%
!! AGGAGGTGTTCTTTGTTGCT+GGG + chr3_2:20706202-20706221 Msa0398710:five_prime_UTR 45.0%
!! CACCTAGTGCTACTGTGTTT+TGG - chr3_2:20706281-20706300 None:intergenic 45.0%
TCCGTTTCTCCTTACGATGA+AGG + chr3_2:20706400-20706419 Msa0398710:CDS 45.0%
ACGAGAAAGGAAGAAGACCT+TGG - chr3_2:20706467-20706486 None:intergenic 45.0%
! ACGCCTCTACAAGTTGAACA+TGG - chr3_2:20707361-20707380 None:intergenic 45.0%
TCCATAGAGTCCAACTAGAG+TGG + chr3_2:20707814-20707833 Msa0398710:intron 45.0%
TCCACTCTAGTTGGACTCTA+TGG - chr3_2:20707818-20707837 None:intergenic 45.0%
TGTTGTATGGGAGTCAGTGT+TGG + chr3_2:20707931-20707950 Msa0398710:intron 45.0%
GTTGTATGGGAGTCAGTGTT+GGG + chr3_2:20707932-20707951 Msa0398710:intron 45.0%
!! AAGGATGTTATGATGGGTGG+TGG + chr3_2:20707998-20708017 Msa0398710:intron 45.0%
GGTGGTACACAAGTCAAGAT+AGG + chr3_2:20708022-20708041 Msa0398710:intron 45.0%
! GTGAAGCTTTGACTAGATGG+AGG + chr3_2:20708160-20708179 Msa0398710:intron 45.0%
! TCAGAAGTGTGGTATGTGCT+AGG - chr3_2:20708227-20708246 None:intergenic 45.0%
TTTGTCCCTTGTATGAGGTG+AGG + chr3_2:20708579-20708598 Msa0398710:intron 45.0%
TTGTCCCTTGTATGAGGTGA+GGG + chr3_2:20708580-20708599 Msa0398710:intron 45.0%
CATTCCCTCACCTCATACAA+GGG - chr3_2:20708587-20708606 None:intergenic 45.0%
GGAAAAACTTGCGGTTCTTC+CGG + chr3_2:20708672-20708691 Msa0398710:intron 45.0%
ATCTCGGCAAGGTAGCAATA+TGG + chr3_2:20708767-20708786 Msa0398710:intron 45.0%
! TCGTTCACATTAGGAGTACG+AGG - chr3_2:20708962-20708981 None:intergenic 45.0%
TGGATCGTAAGTTCATGCTG+AGG + chr3_2:20709021-20709040 Msa0398710:intron 45.0%
CAGGCACAGGCTAATCATAT+TGG - chr3_2:20709359-20709378 None:intergenic 45.0%
GCAGAAGGAACGATATCGTT+TGG - chr3_2:20709650-20709669 None:intergenic 45.0%
! TGTGTGAGGCTGATTCCAAA+TGG - chr3_2:20709911-20709930 None:intergenic 45.0%
! TTTGGAATCAGCCTCACACA+TGG + chr3_2:20709911-20709930 Msa0398710:CDS 45.0%
TTGGAATCAGCCTCACACAT+GGG + chr3_2:20709912-20709931 Msa0398710:CDS 45.0%
TGTCGCCTTCAATGTTAGCA+TGG - chr3_2:20710100-20710119 None:intergenic 45.0%
CGACACATTGATAGAACTCC+AGG + chr3_2:20710115-20710134 Msa0398710:CDS 45.0%
!! AAATAATTCAATAAATTATA+TGG - chr3_2:20707335-20707354 None:intergenic 5.0%
!!! AATTATTATATATATCATTT+TGG + chr3_2:20709107-20709126 Msa0398710:intron 5.0%
TGCAGTTGGGATGAATGGGT+TGG + chr3_2:20706793-20706812 Msa0398710:intron 50.0%
AAGAATGCCAGAAAGCCTCG+TGG + chr3_2:20706892-20706911 Msa0398710:CDS 50.0%
GGATCGTCCAAGAGTTCGAA+TGG + chr3_2:20706913-20706932 Msa0398710:CDS 50.0%
!! GATGTTATGATGGGTGGTGG+TGG + chr3_2:20708001-20708020 Msa0398710:intron 50.0%
! GTTGCATGCTCGAAGTACCT+AGG - chr3_2:20708116-20708135 None:intergenic 50.0%
GAGCATGCAACGAGAAAGCT+TGG + chr3_2:20708125-20708144 Msa0398710:intron 50.0%
GCCCCCTCTAACTCTAGATA+TGG - chr3_2:20708191-20708210 None:intergenic 50.0%
CCATTCCCTCACCTCATACA+AGG - chr3_2:20708588-20708607 None:intergenic 50.0%
CCTTGTATGAGGTGAGGGAA+TGG + chr3_2:20708585-20708604 Msa0398710:intron 50.0%
TTAGCCCTTCCCAGACAAGA+TGG + chr3_2:20709714-20709733 Msa0398710:intron 50.0%
GTTGCACTTGCACCCTGTTA+TGG + chr3_2:20709846-20709865 Msa0398710:CDS 50.0%
GAACTCTTGGACGATCCACG+AGG - chr3_2:20706910-20706929 None:intergenic 55.0%
!! GTTATGATGGGTGGTGGTGG+TGG + chr3_2:20708004-20708023 Msa0398710:intron 55.0%
GGACGATCCACGAGGCTTTC+TGG - chr3_2:20706902-20706921 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 20706178 20710598 20706178 ID=Msa0398710;Name=Msa0398710
chr3_2 mRNA 20706178 20710598 20706178 ID=Msa0398710-mRNA-1;Parent=Msa0398710;Name=Msa0398710-mRNA-1;_AED=0.43;_eAED=0.43;_QI=138|0.55|0.8|0.9|1|1|10|201|350
chr3_2 exon 20706178 20706468 20706178 ID=Msa0398710-mRNA-1:exon:4508;Parent=Msa0398710-mRNA-1
chr3_2 exon 20706699 20706712 20706699 ID=Msa0398710-mRNA-1:exon:4509;Parent=Msa0398710-mRNA-1
chr3_2 exon 20706798 20706934 20706798 ID=Msa0398710-mRNA-1:exon:4510;Parent=Msa0398710-mRNA-1
chr3_2 exon 20708379 20708419 20708379 ID=Msa0398710-mRNA-1:exon:4511;Parent=Msa0398710-mRNA-1
chr3_2 exon 20708673 20708777 20708673 ID=Msa0398710-mRNA-1:exon:4512;Parent=Msa0398710-mRNA-1
chr3_2 exon 20708947 20709026 20708947 ID=Msa0398710-mRNA-1:exon:4513;Parent=Msa0398710-mRNA-1
chr3_2 exon 20709535 20709704 20709535 ID=Msa0398710-mRNA-1:exon:4514;Parent=Msa0398710-mRNA-1
chr3_2 exon 20709775 20709933 20709775 ID=Msa0398710-mRNA-1:exon:4515;Parent=Msa0398710-mRNA-1
chr3_2 exon 20710075 20710159 20710075 ID=Msa0398710-mRNA-1:exon:4516;Parent=Msa0398710-mRNA-1
chr3_2 exon 20710289 20710598 20710289 ID=Msa0398710-mRNA-1:exon:4517;Parent=Msa0398710-mRNA-1
chr3_2 five_prime_UTR 20706178 20706315 20706178 ID=Msa0398710-mRNA-1:five_prime_utr;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20706316 20706468 20706316 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20706699 20706712 20706699 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20706798 20706934 20706798 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20708379 20708419 20708379 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20708673 20708777 20708673 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20708947 20709026 20708947 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20709535 20709704 20709535 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20709775 20709933 20709775 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20710075 20710159 20710075 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 CDS 20710289 20710397 20710289 ID=Msa0398710-mRNA-1:cds;Parent=Msa0398710-mRNA-1
chr3_2 three_prime_UTR 20710398 20710598 20710398 ID=Msa0398710-mRNA-1:three_prime_utr;Parent=Msa0398710-mRNA-1
Gene Sequence

>Msa0398710

ATGAAAATGGTGAATTCAAAAACAAGCAGTGACGACATTTCAGAAGATAGCAGTAGCTCTCAAACTGAAATCGAAAATCACATCTCCGTTTCTCCTTACGATGAAGGAGAGAAAGTTTTCGCATACCACACTTCTTGTCTTTATGAAGCCAAGGGTTGGAAGAAAACTTGGGATGAATGGGTTGGTATTGATCGATTGATGAAACATACTGAGGAAAATATGCGGATTAAACTTGCACTTGATGAGAAATATGGTAATGATAAGAATGCCAGAAAGCCTCGTGGATCGTCCAAGAGTTCGAATGTTGCAAGAGGCAGAAAACGAAAGAATGATTCTCTGGTTAAGGAAAAACTTGCGGTTCTTCCGGACAAACTTGTCAACATTCAGATACCACTAACACTAAAGAAGCAATTAGTTGATGATTTTGAGTTTATTACTCATCTCGGCAAGCTTGTTAAACTTCCTCGTACTCCTAATGTGAACGACATATTCAAGACTTATTTTGATTACAGATTGAAGAAAAGTGGATCGATAGCTGATTCCGTTGAAGAAATTATGAAAGGATTGAGTTGTTACTTTGACAAAGCACTGCCAGTGATGCTCTTGTACAATAATGAGCGTCAGCAGTACCAAGAAGCTTGTCCAAACGATATCGTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGGGAAAGTAGACATAAGTGTCTTAGCTCTTAAGGTTTCTCTTATTCTGCATGTCATGACTTCCGACTTAATTGTTGCACTTGCACCCTGTTATGGAAATACGGATGTTGGTAGAGTTGTTTTGCAAAATGCTGGCCATTTGGAATCAGCCTCACACATGGTCAAGTTGCCAGAGTTATTGTTCCATGCTAACATTGAAGGCGACACATTGATAGAACTCCAGGCACAAATACTTGACTTTCTCAGGTTCTTGCGAAAAAATCAGAGAGCATTTTTCCTTTCTTCTTATCATGTCCAAGAAGATGTTGAGAACAGCAGTGACAAACAAGTTTGTATTGCACATAATATCACATAG

Protein sequence

>Msa0398710

MKMVNSKTSSDDISEDSSSSQTEIENHISVSPYDEGEKVFAYHTSCLYEAKGWKKTWDEWVGIDRLMKHTEENMRIKLALDEKYGNDKNARKPRGSSKSSNVARGRKRKNDSLVKEKLAVLPDKLVNIQIPLTLKKQLVDDFEFITHLGKLVKLPRTPNVNDIFKTYFDYRLKKSGSIADSVEEIMKGLSCYFDKALPVMLLYNNERQQYQEACPNDIVPSAIYGAEHLLRLFGKVDISVLALKVSLILHVMTSDLIVALAPCYGNTDVGRVVLQNAGHLESASHMVKLPELLFHANIEGDTLIELQAQILDFLRFLRKNQRAFFLSSYHVQEDVENSSDKQVCIAHNIT*