AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1097060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097060 MtrunA17_Chr6g0456691 73.380 432 114 1 1 432 1 431 0.0 701
Msa1097060 MtrunA17_Chr7g0221281 94.583 240 13 0 185 424 1 240 5.73e-173 484
Msa1097060 MtrunA17_Chr6g0456681 53.630 427 178 6 1 423 1 411 2.11e-160 459
Msa1097060 MtrunA17_Chr7g0221271 97.561 205 5 0 1 205 1 205 3.20e-150 424
Msa1097060 MtrunA17_Chr2g0283851 50.140 357 160 9 80 425 56 405 1.94e-119 354
Msa1097060 MtrunA17_Chr7g0221291 94.152 171 10 0 1 171 1 171 2.90e-117 340
Msa1097060 MtrunA17_Chr8g0387921 41.032 407 228 6 24 420 15 419 5.20e-113 338
Msa1097060 MtrunA17_Chr6g0451321 45.152 361 190 5 68 424 105 461 1.81e-109 331
Msa1097060 MtrunA17_Chr8g0347321 41.096 365 208 3 62 420 76 439 3.18e-108 327
Msa1097060 MtrunA17_Chr5g0414041 42.898 352 188 7 79 421 87 434 6.35e-96 295
Msa1097060 MtrunA17_Chr5g0414061 40.227 353 196 8 78 421 93 439 7.83e-96 295
Msa1097060 MtrunA17_Chr8g0391481 40.000 355 197 8 77 421 25 373 1.30e-93 287
Msa1097060 MtrunA17_Chr7g0226991 39.155 355 200 8 77 421 55 403 1.78e-92 285
Msa1097060 MtrunA17_Chr3g0140371 40.341 352 193 8 79 421 18 361 5.09e-92 283
Msa1097060 MtrunA17_Chr5g0414091 38.418 354 205 7 77 421 83 432 1.19e-87 273
Msa1097060 MtrunA17_Chr5g0414051 38.701 354 199 10 79 421 75 421 9.12e-85 266
Msa1097060 MtrunA17_Chr1g0188191 35.393 356 214 6 79 423 234 584 3.62e-77 251
Msa1097060 MtrunA17_Chr6g0476041 33.880 366 226 6 69 423 157 517 4.08e-75 244
Msa1097060 MtrunA17_Chr1g0175671 31.358 405 222 13 52 423 131 512 1.66e-54 189
Msa1097060 MtrunA17_Chr7g0258851 31.566 396 230 11 53 432 229 599 3.22e-51 182
Msa1097060 MtrunA17_Chr2g0287901 33.242 364 198 13 79 420 97 437 5.50e-49 173
Msa1097060 MtrunA17_Chr7g0259711 30.726 358 216 11 79 420 91 432 4.40e-48 171
Msa1097060 MtrunA17_Chr4g0071391 29.457 387 231 12 60 427 90 453 2.22e-47 169
Msa1097060 MtrunA17_Chr5g0413271 31.933 357 207 12 77 420 143 476 3.89e-47 169
Msa1097060 MtrunA17_Chr5g0430371 32.022 356 206 12 79 416 58 395 1.21e-45 162
Msa1097060 MtrunA17_Chr3g0105301 29.310 348 226 8 79 420 43 376 9.86e-45 160
Msa1097060 MtrunA17_Chr5g0414081 37.441 211 118 7 232 432 2 208 5.72e-44 152
Msa1097060 MtrunA17_Chr8g0368461 31.989 372 207 12 78 421 177 530 8.08e-44 160
Msa1097060 MtrunA17_Chr7g0269991 30.056 356 212 11 79 421 137 468 1.61e-41 153
Msa1097060 MtrunA17_Chr8g0384151 29.444 360 215 14 76 423 87 419 4.52e-41 151
Msa1097060 MtrunA17_Chr3g0113671 30.682 352 218 9 79 416 106 445 5.31e-41 151
Msa1097060 MtrunA17_Chr8g0360521 26.559 433 274 11 8 420 1 409 8.54e-41 150
Msa1097060 MtrunA17_Chr7g0243301 30.518 367 223 15 68 416 53 405 1.46e-40 149
Msa1097060 MtrunA17_Chr4g0068111 28.037 428 262 13 10 420 55 453 3.34e-40 149
Msa1097060 MtrunA17_Chr1g0213281 29.888 358 218 9 79 420 175 515 7.23e-40 149
Msa1097060 MtrunA17_Chr4g0005491 30.110 362 227 12 70 416 53 403 1.37e-39 147
Msa1097060 MtrunA17_Chr4g0049421 27.945 365 220 8 79 420 48 392 1.89e-39 146
Msa1097060 MtrunA17_Chr5g0437601 29.577 355 224 11 79 420 83 424 2.96e-39 146
Msa1097060 MtrunA17_Chr4g0070341 26.893 383 242 10 56 420 109 471 3.76e-39 147
Msa1097060 MtrunA17_Chr1g0171171 29.379 354 215 11 75 420 49 375 3.46e-38 142
Msa1097060 MtrunA17_Chr3g0114101 29.213 356 224 10 79 420 89 430 3.81e-38 143
Msa1097060 MtrunA17_Chr4g0006991 29.775 356 226 10 77 420 84 427 1.08e-37 142
Msa1097060 MtrunA17_Chr2g0283581 31.054 351 203 11 79 422 42 360 1.58e-37 140
Msa1097060 MtrunA17_Chr3g0085071 27.635 351 222 8 70 416 37 359 7.13e-37 138
Msa1097060 MtrunA17_Chr3g0085081 28.329 353 217 10 70 416 22 344 1.16e-36 137
Msa1097060 MtrunA17_Chr6g0455901 26.744 430 266 11 23 427 18 423 1.93e-36 138
Msa1097060 MtrunA17_Chr2g0325481 28.736 348 205 9 78 416 49 362 1.05e-35 135
Msa1097060 MtrunA17_Chr3g0091031 29.014 355 212 10 70 416 22 344 1.33e-35 134
Msa1097060 MtrunA17_Chr1g0210771 29.213 356 206 14 75 416 55 378 1.97e-35 135
Msa1097060 MtrunA17_Chr2g0314801 28.532 361 207 10 75 420 29 353 2.00e-35 134
Msa1097060 MtrunA17_Chr4g0045951 28.329 353 217 7 76 422 42 364 2.78e-35 134
Msa1097060 MtrunA17_Chr8g0384421 26.531 392 236 11 53 420 109 472 1.76e-34 134
Msa1097060 MtrunA17_Chr7g0242701 30.194 361 218 13 77 420 84 427 2.33e-34 132
Msa1097060 MtrunA17_Chr5g0437291 28.926 363 217 14 77 416 163 507 3.21e-34 134
Msa1097060 MtrunA17_Chr4g0005481 29.459 370 228 11 66 420 95 446 3.99e-34 132
Msa1097060 MtrunA17_Chr4g0045941 28.080 349 221 9 72 416 24 346 1.37e-33 129
Msa1097060 MtrunA17_Chr5g0413851 30.027 373 215 14 60 420 21 359 1.90e-32 126
Msa1097060 MtrunA17_Chr4g0041011 26.446 363 226 8 66 420 34 363 2.20e-31 123
Msa1097060 MtrunA17_Chr3g0097891 28.488 344 212 10 79 416 31 346 5.89e-31 122
Msa1097060 MtrunA17_Chr3g0126021 24.419 430 263 13 24 420 59 459 1.19e-27 114
Msa1097060 MtrunA17_Chr2g0314791 27.635 351 211 10 79 420 29 345 5.48e-27 110
Msa1097060 MtrunA17_Chr1g0209921 48.387 93 46 2 77 167 42 134 6.06e-22 95.1
Msa1097060 MtrunA17_Chr1g0178081 29.808 208 120 7 62 251 35 234 2.53e-17 83.2
Msa1097060 MtrunA17_Chr1g0178081 33.588 131 72 5 298 420 218 341 1.11e-11 65.9
Msa1097060 MtrunA17_Chr7g0275501 47.692 65 33 1 356 419 4 68 8.31e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097060 AT5G15900.2 59.574 423 161 5 3 423 17 431 0.0 530
Msa1097060 AT5G15900.1 59.762 420 159 5 6 423 1 412 0.0 528
Msa1097060 AT3G02440.2 59.429 350 138 3 79 426 135 482 1.87e-161 464
Msa1097060 AT3G02440.1 59.429 350 138 3 79 426 127 474 2.06e-161 464
Msa1097060 AT5G15890.1 51.961 408 169 6 36 423 125 525 1.71e-158 458
Msa1097060 AT3G28150.1 42.319 345 194 3 79 421 70 411 1.10e-104 317
Msa1097060 AT1G01430.1 38.221 416 234 11 22 420 38 447 2.90e-101 310
Msa1097060 AT4G01080.1 41.873 363 183 8 69 418 81 428 2.03e-98 302
Msa1097060 AT4G23790.1 37.845 362 218 4 66 420 66 427 1.55e-96 296
Msa1097060 AT4G11090.1 35.122 410 252 6 24 420 17 425 3.01e-96 296
Msa1097060 AT1G70230.1 36.879 423 234 9 16 421 6 412 4.68e-93 287
Msa1097060 AT4G25360.1 33.933 389 237 7 47 423 147 527 3.94e-77 249
Msa1097060 AT4G25360.2 33.933 389 237 7 47 423 147 527 3.94e-77 249
Msa1097060 AT5G51640.1 34.271 391 237 9 53 428 113 498 9.06e-77 248
Msa1097060 AT3G06080.2 30.112 445 258 13 20 431 32 456 2.04e-51 180
Msa1097060 AT1G60790.1 33.858 381 197 13 75 427 186 539 6.26e-51 180
Msa1097060 AT3G12060.1 32.546 381 218 13 75 434 192 554 1.05e-50 180
Msa1097060 AT5G19160.1 30.022 453 268 14 2 427 22 452 3.20e-50 177
Msa1097060 AT5G06700.1 32.967 364 210 10 73 420 249 594 1.10e-49 178
Msa1097060 AT5G64470.3 30.337 356 218 8 79 420 55 394 3.42e-49 172
Msa1097060 AT5G64470.2 30.110 362 217 9 79 420 55 400 8.08e-48 169
Msa1097060 AT5G20590.1 30.663 362 220 10 76 423 138 482 2.39e-47 169
Msa1097060 AT2G14530.1 29.008 393 228 13 54 420 39 406 1.77e-46 166
Msa1097060 AT3G62390.1 29.974 387 230 11 44 416 108 467 1.85e-46 167
Msa1097060 AT5G06230.2 30.504 377 216 12 68 420 10 364 5.08e-45 160
Msa1097060 AT5G06230.1 30.504 377 216 12 68 420 51 405 8.82e-45 161
Msa1097060 AT2G30010.1 31.172 401 238 15 34 420 20 396 8.63e-44 158
Msa1097060 AT2G30010.2 31.172 401 238 15 34 420 63 439 1.65e-43 158
Msa1097060 AT3G11570.1 31.124 347 193 12 95 420 98 419 2.63e-42 155
Msa1097060 AT5G64020.1 29.032 372 214 11 79 420 57 408 6.30e-42 153
Msa1097060 AT5G49340.1 31.319 364 212 14 76 420 97 441 1.67e-41 153
Msa1097060 AT2G40160.2 30.337 356 217 11 79 416 77 419 1.14e-39 148
Msa1097060 AT2G40320.1 30.423 355 221 11 79 420 81 422 1.19e-39 147
Msa1097060 AT2G40160.1 30.337 356 217 11 79 416 77 419 1.25e-39 147
Msa1097060 AT2G30900.1 31.421 366 213 13 67 420 26 365 2.92e-39 145
Msa1097060 AT2G40150.1 27.865 384 248 10 47 416 48 416 5.25e-39 145
Msa1097060 AT3G55990.1 28.395 405 243 13 34 416 100 479 8.84e-39 146
Msa1097060 AT5G58600.1 29.444 360 211 12 79 420 66 400 8.50e-38 142
Msa1097060 AT1G73140.1 28.610 374 228 9 60 420 58 405 1.92e-37 141
Msa1097060 AT5G19160.2 29.909 331 196 8 2 313 22 335 1.96e-37 140
Msa1097060 AT3G11030.1 29.132 357 224 11 79 420 106 448 1.52e-36 139
Msa1097060 AT5G01620.2 29.640 361 218 13 77 420 108 449 2.80e-36 139
Msa1097060 AT5G01620.1 29.640 361 218 13 77 420 108 449 2.80e-36 139
Msa1097060 AT5G01620.3 29.640 361 218 13 77 420 116 457 2.89e-36 139
Msa1097060 AT2G34070.1 27.586 348 221 10 79 422 65 385 1.54e-35 135
Msa1097060 AT1G29050.1 27.299 348 221 9 79 422 61 380 2.85e-35 134
Msa1097060 AT5G64470.1 30.147 272 166 6 79 336 55 316 3.55e-35 133
Msa1097060 AT1G48880.1 27.536 414 254 16 27 426 64 445 3.82e-35 135
Msa1097060 AT5G01360.2 26.667 360 233 10 77 420 34 378 5.52e-35 134
Msa1097060 AT2G37720.1 27.200 375 211 13 76 420 140 482 9.88e-35 135
Msa1097060 AT5G01360.1 26.667 360 233 10 77 420 90 434 1.23e-34 134
Msa1097060 AT5G64470.4 29.889 271 166 6 79 335 55 315 1.31e-34 131
Msa1097060 AT3G06080.1 30.625 320 184 9 20 313 32 339 2.44e-34 131
Msa1097060 AT3G14850.2 28.205 351 213 10 79 420 34 354 2.47e-34 131
Msa1097060 AT2G38320.1 28.638 426 255 18 8 416 7 400 6.30e-34 131
Msa1097060 AT5G20680.6 25.316 395 219 12 63 420 102 457 1.12e-32 129
Msa1097060 AT5G20680.4 25.316 395 219 12 63 420 196 551 1.48e-32 130
Msa1097060 AT5G20680.1 25.316 395 219 12 63 420 196 551 1.48e-32 130
Msa1097060 AT5G20680.3 25.316 395 219 12 63 420 196 551 1.48e-32 130
Msa1097060 AT5G20680.5 25.316 395 219 12 63 420 196 551 1.48e-32 130
Msa1097060 AT5G20680.2 25.316 395 219 12 63 420 178 533 1.87e-32 129
Msa1097060 AT2G42570.1 29.513 349 210 9 78 420 46 364 2.89e-32 126
Msa1097060 AT3G54260.1 27.321 377 228 11 63 425 35 379 4.39e-32 125
Msa1097060 AT1G78710.1 28.453 362 198 13 78 420 37 356 2.60e-31 123
Msa1097060 AT5G20590.2 31.452 248 152 6 76 313 138 377 7.94e-30 119
Msa1097060 AT3G62390.2 28.772 285 172 8 44 315 108 374 3.48e-29 118
Msa1097060 AT2G31110.2 27.299 348 225 9 75 420 41 362 5.85e-29 117
Msa1097060 AT2G38320.2 29.321 324 200 13 109 416 7 317 6.01e-28 113
Msa1097060 AT2G40160.3 31.535 241 153 6 79 313 77 311 1.52e-27 112
Msa1097060 AT5G58600.2 30.544 239 146 7 79 312 66 289 3.08e-27 110
Msa1097060 AT5G06230.3 28.938 273 154 9 68 316 51 307 7.28e-27 110
Msa1097060 AT2G30900.2 34.031 191 110 5 67 250 26 207 2.87e-24 102
Msa1097060 AT2G31110.3 30.114 176 114 4 78 253 44 210 3.47e-18 84.7
Msa1097060 AT1G78710.2 30.732 205 118 8 78 274 30 218 4.66e-18 84.7
Msa1097060 AT2G34070.2 24.549 277 178 10 150 422 2 251 4.23e-14 72.4
Msa1097060 AT3G14850.1 25.000 276 168 10 150 416 2 247 1.01e-12 68.2

Find 107 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATACTTCATACAATTT+TGG 0.167650 7_3:-22229590 None:intergenic
TCTTGATTTGGTCTAGATTA+TGG 0.187478 7_3:-22229138 None:intergenic
TGCCTTCAACTTCTATAAAA+AGG 0.192447 7_3:+22229484 Msa1097060:CDS
CATGCAGGTGGTAAAATCTT+AGG 0.211139 7_3:+22229004 None:intergenic
ATTGCTAGTAATGTTACTTT+TGG 0.238498 7_3:-22229330 None:intergenic
ATGATATAGTTCTCTTGATT+TGG 0.277015 7_3:-22229150 None:intergenic
TTAAGGGCATAACATTTCTT+AGG 0.279666 7_3:+22233950 Msa1097060:CDS
AAAATTCTTTAAATTATTGA+TGG 0.302379 7_3:-22233929 None:intergenic
TGTGTTTCATTGCTTCTAAA+TGG 0.307505 7_3:-22234039 None:intergenic
CAAGCTATGGAACTTCTCTT+TGG 0.318342 7_3:+22229282 Msa1097060:CDS
GATGAAGGATTTCTAAATAA+AGG 0.319542 7_3:-22229393 None:intergenic
CACCAAAATTGTATGAAGTA+TGG 0.320072 7_3:+22229588 Msa1097060:CDS
TTTGTGTAATATGGTGCTTT+TGG 0.339891 7_3:-22229540 None:intergenic
ATCTATTATTAATGTATTTG+AGG 0.350705 7_3:-22229074 None:intergenic
GATGGGCACCCTAGTAAATA+TGG 0.352672 7_3:+22234192 Msa1097060:CDS
TGTGTGCATTGGTGCTTGCC+TGG 0.353744 7_3:+22234252 Msa1097060:CDS
TGCGAGTGTGATACAATTAC+GGG 0.356367 7_3:-22233571 None:intergenic
CAGATTCTGATTACTTGAAA+TGG 0.357669 7_3:+22229616 Msa1097060:CDS
TCTAAAGAATCAGATTTAAA+AGG 0.364200 7_3:+22233673 Msa1097060:CDS
TTTGATTATGTTATTCTCAA+TGG 0.365612 7_3:+22233769 Msa1097060:CDS
GATTGTGAGGGGAAAATCTA+TGG 0.367994 7_3:+22229695 Msa1097060:CDS
AAGCAATGAAACACAATTAG+AGG 0.374389 7_3:+22234047 Msa1097060:CDS
CATTTCAAGTAATCAGAATC+TGG 0.377243 7_3:-22229615 None:intergenic
TTAAAAGGTCCAGGTTCAAC+TGG 0.378193 7_3:+22233688 Msa1097060:CDS
TTGCGAGTGTGATACAATTA+CGG 0.385613 7_3:-22233572 None:intergenic
AAGAGTGACAAGAATAGAAA+AGG 0.386231 7_3:-22229241 None:intergenic
GTATTTGAGGTTCTAGAGTA+AGG 0.390859 7_3:-22229061 None:intergenic
GGAGTTCAAAATTGCTGAAA+AGG 0.392714 7_3:+22234104 Msa1097060:CDS
AAACGTCACACCAATAATAT+AGG 0.393871 7_3:-22234447 None:intergenic
TTCTTTAGATCTTACCAAAT+GGG 0.400274 7_3:-22233659 None:intergenic
TTACAAGCTAGATGAAAATT+CGG 0.408055 7_3:-22234546 None:intergenic
GAAAATGGGTTATGGAATCA+AGG 0.409487 7_3:+22233994 Msa1097060:CDS
TACAATGTCACATTCTCATT+AGG 0.411907 7_3:-22234222 None:intergenic
ATGAAGGATTTCTAAATAAA+GGG 0.415418 7_3:-22229392 None:intergenic
CTTGTTAGATATGTTGAAGA+TGG 0.416171 7_3:+22234299 Msa1097060:CDS
GGCCAATGTCCATATTTACT+AGG 0.417433 7_3:-22234201 None:intergenic
CCATGATTTGCCTACTATCA+AGG 0.419418 7_3:+22229757 Msa1097060:CDS
AAATCACTCCATGTGTCAAT+AGG 0.422336 7_3:-22234276 None:intergenic
AGAGGCCATTGTGAAATTGT+AGG 0.427604 7_3:-22233626 None:intergenic
TATTTACTAGGGTGCCCATC+TGG 0.431629 7_3:-22234189 None:intergenic
ATAGGAAGCTCACAACCATT+TGG 0.434331 7_3:-22229648 None:intergenic
ATGGTTATAGAAGAGCATTT+AGG 0.434534 7_3:+22233893 Msa1097060:CDS
ATTCTTTAGATCTTACCAAA+TGG 0.442314 7_3:-22233660 None:intergenic
CCATGGTACATGGTTAAATC+AGG 0.443048 7_3:-22233874 None:intergenic
AAATGCAGTGGATGGTTGAT+TGG 0.444149 7_3:-22229436 None:intergenic
ATGCAGGTGGTAAAATCTTA+GGG 0.448235 7_3:+22229005 None:intergenic
ATACATTAATAATAGATAGA+TGG 0.450456 7_3:+22229080 Msa1097060:five_prime_UTR
CAAAGAGAAGTTCCATAGCT+TGG 0.453408 7_3:-22229281 None:intergenic
CTAAATGAAGTTCCAAGCTA+TGG 0.465970 7_3:+22229269 Msa1097060:exon
TCTTCAGTGGAGATTACTTA+CGG 0.466024 7_3:-22234483 None:intergenic
CTAAATAAAGGGTAGGATAG+TGG 0.471242 7_3:-22229381 None:intergenic
TTCAGTTTCTTGAGATTGTG+AGG 0.481446 7_3:+22229682 Msa1097060:CDS
CAAGAATAGAAAAGGGCATA+GGG 0.481517 7_3:-22229233 None:intergenic
CCTTGATAGTAGGCAAATCA+TGG 0.481934 7_3:-22229757 None:intergenic
AAGCTAGATGAAAATTCGGT+TGG 0.482087 7_3:-22234542 None:intergenic
TTACACAAACAAAACATGTT+GGG 0.484375 7_3:+22229554 Msa1097060:CDS
ACAATCTCAAGAAACTGAAA+AGG 0.484507 7_3:-22229678 None:intergenic
AACTGAAAAGGATTGAATAT+AGG 0.487467 7_3:-22229666 None:intergenic
CTGATTACTTGAAATGGAAG+TGG 0.493636 7_3:+22229622 Msa1097060:CDS
AGCTAGATGAAAATTCGGTT+GGG 0.503418 7_3:-22234541 None:intergenic
GAATCAGATTTAAAAGGTCC+AGG 0.503947 7_3:+22233679 Msa1097060:CDS
CAGTGGAGATTACTTACGGC+TGG 0.505533 7_3:-22234479 None:intergenic
AAGAATCTGTGGGGCATACA+TGG 0.506563 7_3:+22234502 Msa1097060:three_prime_UTR
AGAGTGACAAGAATAGAAAA+GGG 0.507306 7_3:-22229240 None:intergenic
TCGAAGAGTCCAGTTGAACC+TGG 0.509975 7_3:-22233697 None:intergenic
ATTACACAAACAAAACATGT+TGG 0.513699 7_3:+22229553 Msa1097060:CDS
ACATTGGTTTACAAGATCAA+TGG 0.514035 7_3:+22233795 Msa1097060:CDS
TGATGTGGTGGAAAGGTTTG+TGG 0.516555 7_3:-22234688 None:intergenic
GCAACAATGTTGAGGCCAGA+TGG 0.516688 7_3:+22234174 Msa1097060:CDS
CAACAATGTTGAGGCCAGAT+GGG 0.527334 7_3:+22234175 Msa1097060:CDS
CTCCATGTGTCAATAGGTCC+AGG 0.529330 7_3:-22234270 None:intergenic
GAAGTGTTACCCTTGATAGT+AGG 0.530829 7_3:-22229767 None:intergenic
GCCAATGTCCATATTTACTA+GGG 0.531584 7_3:-22234200 None:intergenic
ATGGGTTATGGAATCAAGGT+GGG 0.542229 7_3:+22233998 Msa1097060:CDS
TCAGTTTCTTGAGATTGTGA+GGG 0.544490 7_3:+22229683 Msa1097060:CDS
AAATCATCAAATGCAGTGGA+TGG 0.547828 7_3:-22229444 None:intergenic
TATTTGAGGTTCTAGAGTAA+GGG 0.553195 7_3:-22229060 None:intergenic
TCTTTAGATCTTACCAAATG+GGG 0.553732 7_3:-22233658 None:intergenic
GTTAGATATGTTGAAGATGG+AGG 0.553797 7_3:+22234302 Msa1097060:CDS
ATTTAAATCATCAAATGCAG+TGG 0.560828 7_3:-22229448 None:intergenic
CATGATTTGCCTACTATCAA+GGG 0.561143 7_3:+22229758 Msa1097060:CDS
TAAATGCTCTTCTATAACCA+TGG 0.564995 7_3:-22233891 None:intergenic
ACAAGAATAGAAAAGGGCAT+AGG 0.566263 7_3:-22229234 None:intergenic
GCCATTGTGAAATTGTAGGT+TGG 0.567705 7_3:-22233622 None:intergenic
TCTTCTATAACCATGGTACA+TGG 0.570506 7_3:-22233884 None:intergenic
CAGTTTCTTGAGATTGTGAG+GGG 0.570691 7_3:+22229684 Msa1097060:CDS
TTATTCTCAATGGAGGACAT+TGG 0.571639 7_3:+22233779 Msa1097060:CDS
AATCTCCACTGAAGAATCTG+TGG 0.574941 7_3:+22234491 Msa1097060:three_prime_UTR
TGTATAATGATTGTGTGCAT+TGG 0.576508 7_3:+22234241 Msa1097060:CDS
AGCAATGAAACACAATTAGA+GGG 0.580001 7_3:+22234048 Msa1097060:CDS
ATCTCCACTGAAGAATCTGT+GGG 0.580350 7_3:+22234492 Msa1097060:three_prime_UTR
GATTATGTTATTCTCAATGG+AGG 0.586018 7_3:+22233772 Msa1097060:CDS
AGGATTTCTAAATAAAGGGT+AGG 0.589350 7_3:-22229388 None:intergenic
AAATGGAAGTGGAAGCCAAA+TGG 0.589821 7_3:+22229633 Msa1097060:CDS
ACCCTAGTAAATATGGACAT+TGG 0.627120 7_3:+22234199 Msa1097060:CDS
CCTGATTTAACCATGTACCA+TGG 0.627480 7_3:+22233874 Msa1097060:CDS
TTAGATATGTTGAAGATGGA+GGG 0.636258 7_3:+22234303 Msa1097060:CDS
TGCCTGGACCTATTGACACA+TGG 0.638249 7_3:+22234268 Msa1097060:CDS
GGAGATTACTTACGGCTGGA+CGG 0.650491 7_3:-22234475 None:intergenic
AATGGGTTATGGAATCAAGG+TGG 0.651885 7_3:+22233997 Msa1097060:CDS
GCATAGGGGATGAAGACTTG+TGG 0.654321 7_3:-22229218 None:intergenic
AAGAATAGAAAAGGGCATAG+GGG 0.658791 7_3:-22229232 None:intergenic
CAACACAAGCAACAATGTTG+AGG 0.661127 7_3:+22234166 Msa1097060:CDS
AAAATGATTATTTCATGACG+TGG 0.663129 7_3:+22233593 Msa1097060:CDS
TCCAACCTACAATTTCACAA+TGG 0.704000 7_3:+22233621 Msa1097060:CDS
ATGCCCCACAGATTCTTCAG+TGG 0.706493 7_3:-22234496 None:intergenic
TCTCCACTGAAGAATCTGTG+GGG 0.770861 7_3:+22234493 Msa1097060:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTAATAAAGTATTGT+TGG - chr7_3:22230059-22230078 None:intergenic 10.0%
!! AAAAATATTGCTTATAATTT+GGG - chr7_3:22230552-22230571 None:intergenic 10.0%
!! AAAAAATATTGCTTATAATT+TGG - chr7_3:22230553-22230572 None:intergenic 10.0%
!!! TTTGCTAATATTTTATATAA+AGG + chr7_3:22231619-22231638 Msa1097060:intron 10.0%
!!! TTGCTAATATTTTATATAAA+GGG + chr7_3:22231620-22231639 Msa1097060:intron 10.0%
!! ACAAATAAAATAAAATCATA+CGG + chr7_3:22231769-22231788 Msa1097060:intron 10.0%
!!! AACTATAATTTTTTAATTAG+GGG + chr7_3:22233006-22233025 Msa1097060:intron 10.0%
!! AAAATTCTTTAAATTATTGA+TGG - chr7_3:22233932-22233951 None:intergenic 10.0%
!!! CAATAATTTAAAGAATTTTA+AGG + chr7_3:22233933-22233952 Msa1097060:CDS 10.0%
!!! TATCAATTTTATATGTAATT+TGG + chr7_3:22234405-22234424 Msa1097060:three_prime_UTR 10.0%
!!! TTTATTTTTTCCTATATTAT+TGG + chr7_3:22234437-22234456 Msa1097060:three_prime_UTR 10.0%
!! ATCTATTATTAATGTATTTG+AGG - chr7_3:22229077-22229096 None:intergenic 15.0%
!! ATACATTAATAATAGATAGA+TGG + chr7_3:22229080-22229099 Msa1097060:five_prime_UTR 15.0%
!! CTAATATTTAAACATTGAAA+AGG - chr7_3:22229802-22229821 None:intergenic 15.0%
!!! TTATTTTATCAAAAATAGAG+TGG + chr7_3:22229955-22229974 Msa1097060:intron 15.0%
!! AATAATTAAAAAAAAAGCCA+AGG + chr7_3:22230073-22230092 Msa1097060:intron 15.0%
!! ATAATTAAAAAAAAAGCCAA+GGG + chr7_3:22230074-22230093 Msa1097060:intron 15.0%
!!! GCAAAATTTATAAATTTTCT+AGG + chr7_3:22230288-22230307 Msa1097060:intron 15.0%
!!! TCTAATTACATTAATTTTTG+AGG - chr7_3:22230678-22230697 None:intergenic 15.0%
!!! TCTTATGTTTATTTTTTTGA+CGG - chr7_3:22230944-22230963 None:intergenic 15.0%
!!! TTTTTTTTTTGACAAAATCA+GGG - chr7_3:22231247-22231266 None:intergenic 15.0%
!!! TTTTTTTTTTTGACAAAATC+AGG - chr7_3:22231248-22231267 None:intergenic 15.0%
!! TCAAATAAAATTAATGTGAT+GGG - chr7_3:22231291-22231310 None:intergenic 15.0%
!!! TAATATGGTTCAAATTTTTA+GGG - chr7_3:22231355-22231374 None:intergenic 15.0%
!! TGAAATTACAAATTCTAATA+TGG - chr7_3:22231370-22231389 None:intergenic 15.0%
!! ATATAAAACTACAAAAAGAT+GGG - chr7_3:22231664-22231683 None:intergenic 15.0%
!!! AAACATTTTTAATGATTTTG+TGG - chr7_3:22232079-22232098 None:intergenic 15.0%
!! GATTAAATTTCTTATATTGT+TGG - chr7_3:22232167-22232186 None:intergenic 15.0%
!! ATCTAAATAAAATAATTGAG+TGG - chr7_3:22232307-22232326 None:intergenic 15.0%
!! GATATTTAGATATGTATTAT+TGG + chr7_3:22232324-22232343 Msa1097060:intron 15.0%
!! ATAAAATAATTTGAAAAGCT+TGG + chr7_3:22232553-22232572 Msa1097060:intron 15.0%
!!! ACATTTACTTTTATATATCA+TGG + chr7_3:22233420-22233439 Msa1097060:intron 15.0%
!!! TATATCATGGTTTATATTTT+TGG + chr7_3:22233433-22233452 Msa1097060:intron 15.0%
!! TTGTGTTAATACTAATTATA+AGG - chr7_3:22233506-22233525 None:intergenic 15.0%
!! AATAATAAAGATTAAGCAAA+AGG - chr7_3:22233537-22233556 None:intergenic 15.0%
!! ATGAAGGATTTCTAAATAAA+GGG - chr7_3:22229395-22229414 None:intergenic 20.0%
!!! GGTTTTTTTAATGTTTTTCA+AGG - chr7_3:22229418-22229437 None:intergenic 20.0%
!!! CACACTAGTTATTAATTTTT+TGG + chr7_3:22229869-22229888 Msa1097060:intron 20.0%
!! TAGTAACAAATTCTGAATTA+AGG - chr7_3:22230001-22230020 None:intergenic 20.0%
!!! AATAATTGACCTCTTTTTTA+GGG - chr7_3:22230370-22230389 None:intergenic 20.0%
!!! AAATAATTGACCTCTTTTTT+AGG - chr7_3:22230371-22230390 None:intergenic 20.0%
!!! TTTGTTTTTGTTGATGAATT+TGG + chr7_3:22230570-22230589 Msa1097060:intron 20.0%
!! TAAAGAATAGTAATTGATGA+TGG - chr7_3:22230628-22230647 None:intergenic 20.0%
!! CATCAATTACTATTCTTTAT+AGG + chr7_3:22230629-22230648 Msa1097060:intron 20.0%
!! TGCTTATATGTATGAAAATA+AGG - chr7_3:22230753-22230772 None:intergenic 20.0%
!! TATCATACATGTGAAAATAT+GGG + chr7_3:22230981-22231000 Msa1097060:intron 20.0%
!! ATTTATTTACCTAATACGAT+TGG - chr7_3:22231152-22231171 None:intergenic 20.0%
!! TAGGTAAATAAATCATCAAA+TGG + chr7_3:22231159-22231178 Msa1097060:intron 20.0%
!! GTCAAATAAAATTAATGTGA+TGG - chr7_3:22231292-22231311 None:intergenic 20.0%
!!! CTAATATGGTTCAAATTTTT+AGG - chr7_3:22231356-22231375 None:intergenic 20.0%
!! GATATAAAACTACAAAAAGA+TGG - chr7_3:22231665-22231684 None:intergenic 20.0%
!!! TTGCTTATTTTTCTACTTTA+AGG - chr7_3:22231920-22231939 None:intergenic 20.0%
!!! TAATGCAATATTAATTTGCA+TGG + chr7_3:22232206-22232225 Msa1097060:intron 20.0%
!! ACTAATTAACACTAATTATG+TGG - chr7_3:22232252-22232271 None:intergenic 20.0%
!!! TTAGTGTTAATTAGTTTGAA+AGG + chr7_3:22232257-22232276 Msa1097060:intron 20.0%
!! ATGGCTTAAAATAATAAAGT+AGG + chr7_3:22232489-22232508 Msa1097060:intron 20.0%
!! AAATAATAAAGTAGGCTAAA+AGG + chr7_3:22232497-22232516 Msa1097060:intron 20.0%
!!! TATAATTTTTTAATTAGGGG+TGG + chr7_3:22233009-22233028 Msa1097060:intron 20.0%
!! GTTAGCTATATAAATTATGT+TGG - chr7_3:22233143-22233162 None:intergenic 20.0%
!! TAAATCCATCAAGATTTAAT+CGG + chr7_3:22233171-22233190 Msa1097060:intron 20.0%
!! TTTAAAAGAAGAAAAGCTTA+AGG - chr7_3:22233361-22233380 None:intergenic 20.0%
!!! AAGCTTTTCTTCTTTTAAAA+TGG + chr7_3:22233362-22233381 Msa1097060:intron 20.0%
!!! TTTTGGTAGATTATATTGTA+CGG + chr7_3:22233450-22233469 Msa1097060:intron 20.0%
!!! GCTTAATCTTTATTATTTTC+AGG + chr7_3:22233540-22233559 Msa1097060:intron 20.0%
!!! TAATCTTTATTATTTTCAGG+TGG + chr7_3:22233543-22233562 Msa1097060:intron 20.0%
!! TCTAAAGAATCAGATTTAAA+AGG + chr7_3:22233673-22233692 Msa1097060:CDS 20.0%
!! TTTGATTATGTTATTCTCAA+TGG + chr7_3:22233769-22233788 Msa1097060:CDS 20.0%
!! TATGAGAAACAAAAAATTGT+TGG + chr7_3:22233823-22233842 Msa1097060:CDS 20.0%
!!! AGAGTTTTATATGATTCAAT+TGG + chr7_3:22234080-22234099 Msa1097060:CDS 20.0%
! ATGATATAGTTCTCTTGATT+TGG - chr7_3:22229153-22229172 None:intergenic 25.0%
!!! ACTTTTGGAATCATTTGTTT+TGG - chr7_3:22229318-22229337 None:intergenic 25.0%
!!! ATTGCTAGTAATGTTACTTT+TGG - chr7_3:22229333-22229352 None:intergenic 25.0%
! GATGAAGGATTTCTAAATAA+AGG - chr7_3:22229396-22229415 None:intergenic 25.0%
!!! TTAATGTTTTTCAAGGATGA+AGG - chr7_3:22229411-22229430 None:intergenic 25.0%
! ATTTAAATCATCAAATGCAG+TGG - chr7_3:22229451-22229470 None:intergenic 25.0%
!!! CATGTTTTGTTTGTGTAATA+TGG - chr7_3:22229552-22229571 None:intergenic 25.0%
! ATTACACAAACAAAACATGT+TGG + chr7_3:22229553-22229572 Msa1097060:CDS 25.0%
! TTACACAAACAAAACATGTT+GGG + chr7_3:22229554-22229573 Msa1097060:CDS 25.0%
!! TTCCATACTTCATACAATTT+TGG - chr7_3:22229593-22229612 None:intergenic 25.0%
! AACTGAAAAGGATTGAATAT+AGG - chr7_3:22229669-22229688 None:intergenic 25.0%
! TTAAACATTGAAAAGGTCAA+AGG - chr7_3:22229795-22229814 None:intergenic 25.0%
! TCTGAATTAAGGTAATCTAA+AGG - chr7_3:22229990-22230009 None:intergenic 25.0%
! TAAGAATTTATACAAACCCT+TGG - chr7_3:22230093-22230112 None:intergenic 25.0%
!!! ATAATTGACCTCTTTTTTAG+GGG - chr7_3:22230369-22230388 None:intergenic 25.0%
!! TAGTTTTCAAATCAAGGTTT+TGG - chr7_3:22230597-22230616 None:intergenic 25.0%
!! AAAACCTTGATTTGAAAACT+AGG + chr7_3:22230596-22230615 Msa1097060:intron 25.0%
!! AAACCTTGATTTGAAAACTA+GGG + chr7_3:22230597-22230616 Msa1097060:intron 25.0%
!! GCAATCTTTAATGTTTTCTT+TGG + chr7_3:22230770-22230789 Msa1097060:intron 25.0%
!! GGTGAAATATCTTATGTTTT+CGG - chr7_3:22230923-22230942 None:intergenic 25.0%
! GTATCATACATGTGAAAATA+TGG + chr7_3:22230980-22230999 Msa1097060:intron 25.0%
! ATCATACATGTGAAAATATG+GGG + chr7_3:22230982-22231001 Msa1097060:intron 25.0%
! ATAAACTTAAGTGCAAGTTT+AGG - chr7_3:22231544-22231563 None:intergenic 25.0%
!! TATTCCTACTAATTTGCATA+TGG + chr7_3:22231704-22231723 Msa1097060:intron 25.0%
! CAAACATATAGTATCAAACA+AGG - chr7_3:22231736-22231755 None:intergenic 25.0%
!!! CTCAACTGTTTCTATTATTT+TGG - chr7_3:22231887-22231906 None:intergenic 25.0%
! AAATAATAGAAACAGTTGAG+AGG + chr7_3:22231887-22231906 Msa1097060:intron 25.0%
! TACTACTACTATCAATGTAA+AGG + chr7_3:22232027-22232046 Msa1097060:intron 25.0%
! ATCAATGTAAAGGTTTACTA+TGG + chr7_3:22232037-22232056 Msa1097060:intron 25.0%
! ATGGAATGAAATGAAAACAA+AGG + chr7_3:22232225-22232244 Msa1097060:intron 25.0%
!!! GTTTTTTTTCCTTTTCACTT+GGG + chr7_3:22232455-22232474 Msa1097060:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7_3:22232765-22232784 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr7_3:22232778-22232797 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr7_3:22232777-22232796 Msa1097060:intron 25.0%
! GATGTCAAAATATCATTACT+TGG + chr7_3:22232825-22232844 Msa1097060:intron 25.0%
!!! TTTATTATTTTCAGGTGGAA+TGG + chr7_3:22233548-22233567 Msa1097060:intron 25.0%
! AAAATGATTATTTCATGACG+TGG + chr7_3:22233593-22233612 Msa1097060:CDS 25.0%
! TTCTTTAGATCTTACCAAAT+GGG - chr7_3:22233662-22233681 None:intergenic 25.0%
! ATTCTTTAGATCTTACCAAA+TGG - chr7_3:22233663-22233682 None:intergenic 25.0%
!! GTTTTATATGATTCAATTGG+AGG + chr7_3:22234083-22234102 Msa1097060:CDS 25.0%
!! GAAAAAAGGGTTTGAAATTT+AGG + chr7_3:22234133-22234152 Msa1097060:CDS 25.0%
! TTACAAGCTAGATGAAAATT+CGG - chr7_3:22234549-22234568 None:intergenic 25.0%
!! TATTTGAGGTTCTAGAGTAA+GGG - chr7_3:22229063-22229082 None:intergenic 30.0%
!! TCTTGATTTGGTCTAGATTA+TGG - chr7_3:22229141-22229160 None:intergenic 30.0%
AGAGTGACAAGAATAGAAAA+GGG - chr7_3:22229243-22229262 None:intergenic 30.0%
AAGAGTGACAAGAATAGAAA+AGG - chr7_3:22229244-22229263 None:intergenic 30.0%
AGGATTTCTAAATAAAGGGT+AGG - chr7_3:22229391-22229410 None:intergenic 30.0%
TGCCTTCAACTTCTATAAAA+AGG + chr7_3:22229484-22229503 Msa1097060:CDS 30.0%
! CACCTTTTTATAGAAGTTGA+AGG - chr7_3:22229489-22229508 None:intergenic 30.0%
!! AAAAGGTGTGACATTTTTAC+TGG + chr7_3:22229501-22229520 Msa1097060:CDS 30.0%
! TAATATGGTGCTTTTGGATT+TGG - chr7_3:22229537-22229556 None:intergenic 30.0%
! TTTGTGTAATATGGTGCTTT+TGG - chr7_3:22229543-22229562 None:intergenic 30.0%
CACCAAAATTGTATGAAGTA+TGG + chr7_3:22229588-22229607 Msa1097060:CDS 30.0%
! CATTTCAAGTAATCAGAATC+TGG - chr7_3:22229618-22229637 None:intergenic 30.0%
CAGATTCTGATTACTTGAAA+TGG + chr7_3:22229616-22229635 Msa1097060:CDS 30.0%
ACAATCTCAAGAAACTGAAA+AGG - chr7_3:22229681-22229700 None:intergenic 30.0%
TTAAGGTAATCTAAAGGTGA+TGG - chr7_3:22229984-22230003 None:intergenic 30.0%
!! TATTGTTGGCTCTGAATTTA+AGG - chr7_3:22230045-22230064 None:intergenic 30.0%
CAATTATTCCCCTAAAAAAG+AGG + chr7_3:22230358-22230377 Msa1097060:intron 30.0%
! CAATTTTACTCTTCAAACAC+TGG - chr7_3:22230517-22230536 None:intergenic 30.0%
! CTTATAATTTGGGACAAAAG+GGG - chr7_3:22230542-22230561 None:intergenic 30.0%
! GCTTATAATTTGGGACAAAA+GGG - chr7_3:22230543-22230562 None:intergenic 30.0%
! TGCTTATAATTTGGGACAAA+AGG - chr7_3:22230544-22230563 None:intergenic 30.0%
!! TTTCCCTAGTTTTCAAATCA+AGG - chr7_3:22230603-22230622 None:intergenic 30.0%
! TTGATTTGAAAACTAGGGAA+AGG + chr7_3:22230602-22230621 Msa1097060:intron 30.0%
TCATACATGTGAAAATATGG+GGG + chr7_3:22230983-22231002 Msa1097060:intron 30.0%
ATACGATTGGATCGAATTAT+GGG - chr7_3:22231139-22231158 None:intergenic 30.0%
AATACGATTGGATCGAATTA+TGG - chr7_3:22231140-22231159 None:intergenic 30.0%
TAATTCGATCCAATCGTATT+AGG + chr7_3:22231140-22231159 Msa1097060:intron 30.0%
AATGTCCATATGCATTACAA+GGG + chr7_3:22231209-22231228 Msa1097060:intron 30.0%
TTAGGGTTTATAATTTCACG+TGG - chr7_3:22231338-22231357 None:intergenic 30.0%
TAGTCAAGCATTTGAATTAG+TGG - chr7_3:22231442-22231461 None:intergenic 30.0%
TCATGTCTAGTAATTCAAAG+AGG - chr7_3:22231515-22231534 None:intergenic 30.0%
AAGGGAAATAAAACACAAGA+TGG + chr7_3:22231638-22231657 Msa1097060:intron 30.0%
TTAGCCATATGCAAATTAGT+AGG - chr7_3:22231711-22231730 None:intergenic 30.0%
ATCATATTGTGTGTCTTATG+CGG + chr7_3:22232370-22232389 Msa1097060:intron 30.0%
ATGTAAACAATACTATGTGC+TGG + chr7_3:22232403-22232422 Msa1097060:intron 30.0%
!!! GGTTTTTTTTCCTTTTCACT+TGG + chr7_3:22232454-22232473 Msa1097060:intron 30.0%
ATAAAGTAGGCTAAAAGGAA+TGG + chr7_3:22232502-22232521 Msa1097060:intron 30.0%
GCTAAAAGGAATGGTTTAAA+AGG + chr7_3:22232511-22232530 Msa1097060:intron 30.0%
GAGCAATACTAATTTGAAAG+TGG + chr7_3:22232625-22232644 Msa1097060:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr7_3:22232680-22232699 Msa1097060:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr7_3:22232752-22232771 None:intergenic 30.0%
CAAAATATCATTACTTGGAG+TGG + chr7_3:22232830-22232849 Msa1097060:intron 30.0%
AACAACCGATTAAATCTTGA+TGG - chr7_3:22233179-22233198 None:intergenic 30.0%
AAAAGCTTAAGGAAATGCTT+CGG - chr7_3:22233350-22233369 None:intergenic 30.0%
TCTTTAGATCTTACCAAATG+GGG - chr7_3:22233661-22233680 None:intergenic 30.0%
!! TGAGTTATCCATTTTTCATC+TGG - chr7_3:22233739-22233758 None:intergenic 30.0%
GATTATGTTATTCTCAATGG+AGG + chr7_3:22233772-22233791 Msa1097060:CDS 30.0%
!! ACATTGGTTTACAAGATCAA+TGG + chr7_3:22233795-22233814 Msa1097060:CDS 30.0%
TAAATGCTCTTCTATAACCA+TGG - chr7_3:22233894-22233913 None:intergenic 30.0%
!! ATGGTTATAGAAGAGCATTT+AGG + chr7_3:22233893-22233912 Msa1097060:CDS 30.0%
! TTAAGGGCATAACATTTCTT+AGG + chr7_3:22233950-22233969 Msa1097060:CDS 30.0%
!! TCACCATCACATTTTGAAAA+TGG + chr7_3:22233979-22233998 Msa1097060:CDS 30.0%
!! CACCATCACATTTTGAAAAT+GGG + chr7_3:22233980-22233999 Msa1097060:CDS 30.0%
! AACCCATTTTCAAAATGTGA+TGG - chr7_3:22233985-22234004 None:intergenic 30.0%
!!! CACATTTTGAAAATGGGTTA+TGG + chr7_3:22233986-22234005 Msa1097060:CDS 30.0%
TGTGTTTCATTGCTTCTAAA+TGG - chr7_3:22234042-22234061 None:intergenic 30.0%
AAGCAATGAAACACAATTAG+AGG + chr7_3:22234047-22234066 Msa1097060:CDS 30.0%
AGCAATGAAACACAATTAGA+GGG + chr7_3:22234048-22234067 Msa1097060:CDS 30.0%
TGAAAAGGAAGCAAGAAAAA+AGG + chr7_3:22234119-22234138 Msa1097060:CDS 30.0%
GAAAAGGAAGCAAGAAAAAA+GGG + chr7_3:22234120-22234139 Msa1097060:CDS 30.0%
TACAATGTCACATTCTCATT+AGG - chr7_3:22234225-22234244 None:intergenic 30.0%
TGTATAATGATTGTGTGCAT+TGG + chr7_3:22234241-22234260 Msa1097060:CDS 30.0%
CTTGTTAGATATGTTGAAGA+TGG + chr7_3:22234299-22234318 Msa1097060:CDS 30.0%
TTAGATATGTTGAAGATGGA+GGG + chr7_3:22234303-22234322 Msa1097060:CDS 30.0%
AAACGTCACACCAATAATAT+AGG - chr7_3:22234450-22234469 None:intergenic 30.0%
!! GTATTTGAGGTTCTAGAGTA+AGG - chr7_3:22229064-22229083 None:intergenic 35.0%
! AAGAATAGAAAAGGGCATAG+GGG - chr7_3:22229235-22229254 None:intergenic 35.0%
! CAAGAATAGAAAAGGGCATA+GGG - chr7_3:22229236-22229255 None:intergenic 35.0%
! ACAAGAATAGAAAAGGGCAT+AGG - chr7_3:22229237-22229256 None:intergenic 35.0%
CTAAATGAAGTTCCAAGCTA+TGG + chr7_3:22229269-22229288 Msa1097060:exon 35.0%
CTAAATAAAGGGTAGGATAG+TGG - chr7_3:22229384-22229403 None:intergenic 35.0%
AAATCATCAAATGCAGTGGA+TGG - chr7_3:22229447-22229466 None:intergenic 35.0%
! TGACATTTTTACTGGTGAGT+GGG + chr7_3:22229509-22229528 Msa1097060:CDS 35.0%
CTGATTACTTGAAATGGAAG+TGG + chr7_3:22229622-22229641 Msa1097060:CDS 35.0%
TTCAGTTTCTTGAGATTGTG+AGG + chr7_3:22229682-22229701 Msa1097060:CDS 35.0%
TCAGTTTCTTGAGATTGTGA+GGG + chr7_3:22229683-22229702 Msa1097060:CDS 35.0%
! GGAAAATCTATGGCTTTTGT+TGG + chr7_3:22229705-22229724 Msa1097060:CDS 35.0%
! CATGATTTGCCTACTATCAA+GGG + chr7_3:22229758-22229777 Msa1097060:CDS 35.0%
AATAGATGTAGTAGTGTGAG+TGG + chr7_3:22230331-22230350 Msa1097060:intron 35.0%
! AGCTGGTTAATTAGGACTTT+TGG - chr7_3:22231021-22231040 None:intergenic 35.0%
CAAGATACAGCTGGTTAATT+AGG - chr7_3:22231029-22231048 None:intergenic 35.0%
! AGACCAAAGACAAAGACTTT+TGG - chr7_3:22231060-22231079 None:intergenic 35.0%
AAAGTCTTTGTCTTTGGTCT+TGG + chr7_3:22231060-22231079 Msa1097060:intron 35.0%
CATTAGGAAGATGGCAAAAT+AGG - chr7_3:22231096-22231115 None:intergenic 35.0%
! CTATTTTGCCATCTTCCTAA+TGG + chr7_3:22231094-22231113 Msa1097060:intron 35.0%
CAATGTCCATATGCATTACA+AGG + chr7_3:22231208-22231227 Msa1097060:intron 35.0%
AGATTCCCTTGTAATGCATA+TGG - chr7_3:22231217-22231236 None:intergenic 35.0%
!! ATAATTTCACGTGGTGGATA+AGG - chr7_3:22231329-22231348 None:intergenic 35.0%
ACAAATTCACCGTTGGATTA+AGG + chr7_3:22231394-22231413 Msa1097060:intron 35.0%
!! TTTTGAGAGCCTTAATCCAA+CGG - chr7_3:22231406-22231425 None:intergenic 35.0%
TGTCTAGTAATTCAAAGAGG+AGG - chr7_3:22231512-22231531 None:intergenic 35.0%
TTCTCAACTGTTCTACTTTG+TGG - chr7_3:22231590-22231609 None:intergenic 35.0%
TGAACCTAAAATTAGCCAAG+AGG + chr7_3:22231828-22231847 Msa1097060:intron 35.0%
TTCCAAGTTTGTAACATGCA+TGG + chr7_3:22232429-22232448 Msa1097060:intron 35.0%
AAGTTTGTAACATGCATGGA+GGG + chr7_3:22232433-22232452 Msa1097060:intron 35.0%
! TTTTCTGTTCCCAAGTGAAA+AGG - chr7_3:22232467-22232486 None:intergenic 35.0%
!!! TGGCTCAAGTTTTAGTTTCA+AGG + chr7_3:22232573-22232592 Msa1097060:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr7_3:22232685-22232704 None:intergenic 35.0%
!!! ATTTTTTAATTAGGGGTGGC+AGG + chr7_3:22233013-22233032 Msa1097060:intron 35.0%
GGTAGATTATATTGTACGGT+TGG + chr7_3:22233454-22233473 Msa1097060:intron 35.0%
TTGCGAGTGTGATACAATTA+CGG - chr7_3:22233575-22233594 None:intergenic 35.0%
TCCAACCTACAATTTCACAA+TGG + chr7_3:22233621-22233640 Msa1097060:CDS 35.0%
! ATTTCACAATGGCCTCTTTT+TGG + chr7_3:22233632-22233651 Msa1097060:CDS 35.0%
GAATCAGATTTAAAAGGTCC+AGG + chr7_3:22233679-22233698 Msa1097060:CDS 35.0%
TTGATGAGCCAGATGAAAAA+TGG + chr7_3:22233728-22233747 Msa1097060:CDS 35.0%
TTATTCTCAATGGAGGACAT+TGG + chr7_3:22233779-22233798 Msa1097060:CDS 35.0%
TCTTCTATAACCATGGTACA+TGG - chr7_3:22233887-22233906 None:intergenic 35.0%
GGAGTTCAAAATTGCTGAAA+AGG + chr7_3:22234104-22234123 Msa1097060:CDS 35.0%
ACCCTAGTAAATATGGACAT+TGG + chr7_3:22234199-22234218 Msa1097060:CDS 35.0%
GCCAATGTCCATATTTACTA+GGG - chr7_3:22234203-22234222 None:intergenic 35.0%
AAATCACTCCATGTGTCAAT+AGG - chr7_3:22234279-22234298 None:intergenic 35.0%
GTTAGATATGTTGAAGATGG+AGG + chr7_3:22234302-22234321 Msa1097060:CDS 35.0%
TCTTCAGTGGAGATTACTTA+CGG - chr7_3:22234486-22234505 None:intergenic 35.0%
AGCTAGATGAAAATTCGGTT+GGG - chr7_3:22234544-22234563 None:intergenic 35.0%
AAGCTAGATGAAAATTCGGT+TGG - chr7_3:22234545-22234564 None:intergenic 35.0%
CAAAGAGAAGTTCCATAGCT+TGG - chr7_3:22229284-22229303 None:intergenic 40.0%
CAAGCTATGGAACTTCTCTT+TGG + chr7_3:22229282-22229301 Msa1097060:CDS 40.0%
AAATGCAGTGGATGGTTGAT+TGG - chr7_3:22229439-22229458 None:intergenic 40.0%
! GTGACATTTTTACTGGTGAG+TGG + chr7_3:22229508-22229527 Msa1097060:CDS 40.0%
AAATGGAAGTGGAAGCCAAA+TGG + chr7_3:22229633-22229652 Msa1097060:CDS 40.0%
ATAGGAAGCTCACAACCATT+TGG - chr7_3:22229651-22229670 None:intergenic 40.0%
CAGTTTCTTGAGATTGTGAG+GGG + chr7_3:22229684-22229703 Msa1097060:CDS 40.0%
GATTGTGAGGGGAAAATCTA+TGG + chr7_3:22229695-22229714 Msa1097060:CDS 40.0%
! CCTTGATAGTAGGCAAATCA+TGG - chr7_3:22229760-22229779 None:intergenic 40.0%
! CCATGATTTGCCTACTATCA+AGG + chr7_3:22229757-22229776 Msa1097060:CDS 40.0%
! GAAGTGTTACCCTTGATAGT+AGG - chr7_3:22229770-22229789 None:intergenic 40.0%
GCTCCAAAAGTCTTTGTCTT+TGG + chr7_3:22231054-22231073 Msa1097060:intron 40.0%
!! TCTTTGTCTTTGGTCTTGGT+TGG + chr7_3:22231064-22231083 Msa1097060:intron 40.0%
TTGGATCGAATTATGGGCTT+AGG - chr7_3:22231133-22231152 None:intergenic 40.0%
GGGTTTATAATTTCACGTGG+TGG - chr7_3:22231335-22231354 None:intergenic 40.0%
TCATGCAACAAATTCACCGT+TGG + chr7_3:22231387-22231406 Msa1097060:intron 40.0%
! GAAGCCTCTTGGCTAATTTT+AGG - chr7_3:22231835-22231854 None:intergenic 40.0%
CGTTAATAGTTGAAGCCTCT+TGG - chr7_3:22231846-22231865 None:intergenic 40.0%
GAATCCTAGATGTTACGTGA+GGG + chr7_3:22232279-22232298 Msa1097060:intron 40.0%
AATCCTAGATGTTACGTGAG+GGG + chr7_3:22232280-22232299 Msa1097060:intron 40.0%
CTCCATGCATGTTACAAACT+TGG - chr7_3:22232434-22232453 None:intergenic 40.0%
CAAGTTTGTAACATGCATGG+AGG + chr7_3:22232432-22232451 Msa1097060:intron 40.0%
!!! GCTCTCTTTTTTCCCAATCT+AGG - chr7_3:22232609-22232628 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr7_3:22232742-22232761 None:intergenic 40.0%
AAGGAAATGCTTCGGTTGTT+TGG - chr7_3:22233342-22233361 None:intergenic 40.0%
TGCGAGTGTGATACAATTAC+GGG - chr7_3:22233574-22233593 None:intergenic 40.0%
GCCATTGTGAAATTGTAGGT+TGG - chr7_3:22233625-22233644 None:intergenic 40.0%
AGAGGCCATTGTGAAATTGT+AGG - chr7_3:22233629-22233648 None:intergenic 40.0%
TTAAAAGGTCCAGGTTCAAC+TGG + chr7_3:22233688-22233707 Msa1097060:CDS 40.0%
CCATGGTACATGGTTAAATC+AGG - chr7_3:22233877-22233896 None:intergenic 40.0%
CCTGATTTAACCATGTACCA+TGG + chr7_3:22233874-22233893 Msa1097060:CDS 40.0%
CAACACAAGCAACAATGTTG+AGG + chr7_3:22234166-22234185 Msa1097060:CDS 40.0%
GGCCAATGTCCATATTTACT+AGG - chr7_3:22234204-22234223 None:intergenic 40.0%
AATCTCCACTGAAGAATCTG+TGG + chr7_3:22234491-22234510 Msa1097060:three_prime_UTR 40.0%
ATCTCCACTGAAGAATCTGT+GGG + chr7_3:22234492-22234511 Msa1097060:three_prime_UTR 40.0%
! GCTTTTGTTGGAGACTCAGT+TGG + chr7_3:22229717-22229736 Msa1097060:CDS 45.0%
GAGCAAAGACAAGATACAGC+TGG - chr7_3:22231038-22231057 None:intergenic 45.0%
TTGCCATCTTCCTAATGGCA+TGG + chr7_3:22231099-22231118 Msa1097060:intron 45.0%
CAACCATGCCATTAGGAAGA+TGG - chr7_3:22231105-22231124 None:intergenic 45.0%
CATCTTCCTAATGGCATGGT+TGG + chr7_3:22231103-22231122 Msa1097060:intron 45.0%
!! TGTGATGGGCACACTTATCA+GGG - chr7_3:22231277-22231296 None:intergenic 45.0%
!! ATGTGATGGGCACACTTATC+AGG - chr7_3:22231278-22231297 None:intergenic 45.0%
CTTGATGTGACGACTAGTGT+TGG + chr7_3:22231965-22231984 Msa1097060:intron 45.0%
GGAATCCTAGATGTTACGTG+AGG + chr7_3:22232278-22232297 Msa1097060:intron 45.0%
CACTTGGGAACAGAAAAGCA+TGG + chr7_3:22232470-22232489 Msa1097060:intron 45.0%
! AGGTGCTACAGTACCTAGAT+TGG + chr7_3:22232593-22232612 Msa1097060:intron 45.0%
! GGTGCTACAGTACCTAGATT+GGG + chr7_3:22232594-22232613 Msa1097060:intron 45.0%
CAAATGGGGAGTCCAAAAAG+AGG - chr7_3:22233647-22233666 None:intergenic 45.0%
! CTCTTTTTGGACTCCCCATT+TGG + chr7_3:22233645-22233664 Msa1097060:CDS 45.0%
CAACAATGTTGAGGCCAGAT+GGG + chr7_3:22234175-22234194 Msa1097060:CDS 45.0%
! TATTTACTAGGGTGCCCATC+TGG - chr7_3:22234192-22234211 None:intergenic 45.0%
GATGGGCACCCTAGTAAATA+TGG + chr7_3:22234192-22234211 Msa1097060:CDS 45.0%
TCTCCACTGAAGAATCTGTG+GGG + chr7_3:22234493-22234512 Msa1097060:three_prime_UTR 45.0%
AAGAATCTGTGGGGCATACA+TGG + chr7_3:22234502-22234521 Msa1097060:three_prime_UTR 45.0%
!!! AAAACTATAATTTTTTAATT+AGG + chr7_3:22233004-22233023 Msa1097060:intron 5.0%
!!! AAACTATAATTTTTTAATTA+GGG + chr7_3:22233005-22233024 Msa1097060:intron 5.0%
!! GATATTAAAATATAAATTAA+AGG - chr7_3:22233278-22233297 None:intergenic 5.0%
!!! AATAATTTAAAGAATTTTAA+GGG + chr7_3:22233934-22233953 Msa1097060:CDS 5.0%
GCATAGGGGATGAAGACTTG+TGG - chr7_3:22229221-22229240 None:intergenic 50.0%
GGTGAACCAACCATGCCATT+AGG - chr7_3:22231112-22231131 None:intergenic 50.0%
TCGAAGAGTCCAGTTGAACC+TGG - chr7_3:22233700-22233719 None:intergenic 50.0%
GCAACAATGTTGAGGCCAGA+TGG + chr7_3:22234174-22234193 Msa1097060:CDS 50.0%
TGCCTGGACCTATTGACACA+TGG + chr7_3:22234268-22234287 Msa1097060:CDS 50.0%
CTCCATGTGTCAATAGGTCC+AGG - chr7_3:22234273-22234292 None:intergenic 50.0%
GGAGATTACTTACGGCTGGA+CGG - chr7_3:22234478-22234497 None:intergenic 50.0%
CAGTGGAGATTACTTACGGC+TGG - chr7_3:22234482-22234501 None:intergenic 50.0%
ATGCCCCACAGATTCTTCAG+TGG - chr7_3:22234499-22234518 None:intergenic 50.0%
GGATAAGGACGTGGAGGACA+GGG - chr7_3:22231314-22231333 None:intergenic 55.0%
TGGATAAGGACGTGGAGGAC+AGG - chr7_3:22231315-22231334 None:intergenic 55.0%
!! TCACGTGGTGGATAAGGACG+TGG - chr7_3:22231323-22231342 None:intergenic 55.0%
GGTCCCCTCACGTAACATCT+AGG - chr7_3:22232286-22232305 None:intergenic 55.0%
! TGTGTGCATTGGTGCTTGCC+TGG + chr7_3:22234252-22234271 Msa1097060:CDS 55.0%
!! CGTGGTGGATAAGGACGTGG+AGG - chr7_3:22231320-22231339 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 22229011 22234700 22229011 ID=Msa1097060;Name=Msa1097060
chr7_3 mRNA 22229011 22234700 22229011 ID=Msa1097060-mRNA-1;Parent=Msa1097060;Name=Msa1097060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=262|1|1|1|0|0|2|329|438
chr7_3 exon 22229011 22229779 22229011 ID=Msa1097060-mRNA-1:exon:4905;Parent=Msa1097060-mRNA-1
chr7_3 exon 22233562 22234700 22233562 ID=Msa1097060-mRNA-1:exon:4906;Parent=Msa1097060-mRNA-1
chr7_3 five_prime_UTR 22229011 22229272 22229011 ID=Msa1097060-mRNA-1:five_prime_utr;Parent=Msa1097060-mRNA-1
chr7_3 CDS 22229273 22229779 22229273 ID=Msa1097060-mRNA-1:cds;Parent=Msa1097060-mRNA-1
chr7_3 CDS 22233562 22234371 22233562 ID=Msa1097060-mRNA-1:cds;Parent=Msa1097060-mRNA-1
chr7_3 three_prime_UTR 22234372 22234700 22234372 ID=Msa1097060-mRNA-1:three_prime_utr;Parent=Msa1097060-mRNA-1
Gene Sequence

>Msa1097060

ATGAAGTTCCAAGCTATGGAACTTCTCTTTGGTAAAAACACACCAAAACAAATGATTCCAAAAGTAACATTACTAGCAATTTTTGCAATACTTGTCTTCACTGTCACACCACTATCCTACCCTTTATTTAGAAATCCTTCATCCTTGAAAAACATTAAAAAAACCAATCAACCATCCACTGCATTTGATGATTTAAATGAATCAGCAAGTTTGCCTTCAACTTCTATAAAAAGGTGTGACATTTTTACTGGTGAGTGGGTTCCAAATCCAAAAGCACCATATTACACAAACAAAACATGTTGGGCAATACATGAACACCAAAATTGTATGAAGTATGGAAGACCAGATTCTGATTACTTGAAATGGAAGTGGAAGCCAAATGGTTGTGAGCTTCCTATATTCAATCCTTTTCAGTTTCTTGAGATTGTGAGGGGAAAATCTATGGCTTTTGTTGGAGACTCAGTTGGTAGAAATCAGATGCAGTCCATGATTTGCCTACTATCAAGGGTGGAATGGCCCGTAATTGTATCACACTCGCAAAATGATTATTTCATGACGTGGCACTATCCAACCTACAATTTCACAATGGCCTCTTTTTGGACTCCCCATTTGGTAAGATCTAAAGAATCAGATTTAAAAGGTCCAGGTTCAACTGGACTCTTCGATCTTTACATTGATGAGCCAGATGAAAAATGGATAACTCAAATTGAAGATTTTGATTATGTTATTCTCAATGGAGGACATTGGTTTACAAGATCAATGGTATTCTATGAGAAACAAAAAATTGTTGGATGTCATTATTGTCTCTTAGAAAATGTTCCTGATTTAACCATGTACCATGGTTATAGAAGAGCATTTAGGACTGCATTTAAAGCCATCAATAATTTAAAGAATTTTAAGGGCATAACATTTCTTAGGACATTTTCACCATCACATTTTGAAAATGGGTTATGGAATCAAGGTGGGAATTGTGTTAGAACTAAACCATTTAGAAGCAATGAAACACAATTAGAGGGATTTAATTTAGAGTTTTATATGATTCAATTGGAGGAGTTCAAAATTGCTGAAAAGGAAGCAAGAAAAAAGGGTTTGAAATTTAGGTTATATGATACAACACAAGCAACAATGTTGAGGCCAGATGGGCACCCTAGTAAATATGGACATTGGCCTAATGAGAATGTGACATTGTATAATGATTGTGTGCATTGGTGCTTGCCTGGACCTATTGACACATGGAGTGATTTCTTGTTAGATATGTTGAAGATGGAGGGTGTGAGATCAGCTGAAGAAAGAAGACTTCATTTGCACACAAATTGA
Protein sequence

>Msa1097060

MKFQAMELLFGKNTPKQMIPKVTLLAIFAILVFTVTPLSYPLFRNPSSLKNIKKTNQPSTAFDDLNESASLPSTSIKRCDIFTGEWVPNPKAPYYTNKTCWAIHEHQNCMKYGRPDSDYLKWKWKPNGCELPIFNPFQFLEIVRGKSMAFVGDSVGRNQMQSMICLLSRVEWPVIVSHSQNDYFMTWHYPTYNFTMASFWTPHLVRSKESDLKGPGSTGLFDLYIDEPDEKWITQIEDFDYVILNGGHWFTRSMVFYEKQKIVGCHYCLLENVPDLTMYHGYRRAFRTAFKAINNLKNFKGITFLRTFSPSHFENGLWNQGGNCVRTKPFRSNETQLEGFNLEFYMIQLEEFKIAEKEARKKGLKFRLYDTTQATMLRPDGHPSKYGHWPNENVTLYNDCVHWCLPGPIDTWSDFLLDMLKMEGVRSAEERRLHLHTN*