AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1051730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051730 MtrunA17_Chr6g0456691 73.148 432 115 1 1 432 1 431 0.0 698
Msa1051730 MtrunA17_Chr7g0221281 94.167 240 14 0 185 424 1 240 1.60e-172 483
Msa1051730 MtrunA17_Chr6g0456681 53.132 431 182 6 1 427 1 415 9.02e-160 457
Msa1051730 MtrunA17_Chr7g0221271 97.561 205 5 0 1 205 1 205 5.78e-150 424
Msa1051730 MtrunA17_Chr2g0283851 50.140 357 160 9 80 425 56 405 4.07e-119 353
Msa1051730 MtrunA17_Chr7g0221291 93.567 171 11 0 1 171 1 171 9.53e-117 338
Msa1051730 MtrunA17_Chr8g0387921 40.786 407 229 6 24 420 15 419 3.18e-112 336
Msa1051730 MtrunA17_Chr6g0451321 44.875 361 191 5 68 424 105 461 4.69e-109 330
Msa1051730 MtrunA17_Chr8g0347321 40.822 365 209 3 62 420 76 439 9.49e-108 325
Msa1051730 MtrunA17_Chr5g0414041 43.182 352 187 7 79 421 87 434 2.54e-96 296
Msa1051730 MtrunA17_Chr5g0414061 40.510 353 195 8 78 421 93 439 4.24e-96 296
Msa1051730 MtrunA17_Chr8g0391481 40.000 355 197 8 77 421 25 373 6.03e-94 288
Msa1051730 MtrunA17_Chr7g0226991 39.155 355 200 8 77 421 55 403 8.27e-93 286
Msa1051730 MtrunA17_Chr3g0140371 40.057 352 194 8 79 421 18 361 1.71e-91 281
Msa1051730 MtrunA17_Chr5g0414091 38.136 354 206 7 77 421 83 432 9.67e-88 274
Msa1051730 MtrunA17_Chr5g0414051 38.310 355 199 10 79 421 75 421 2.56e-84 265
Msa1051730 MtrunA17_Chr1g0188191 35.674 356 213 6 79 423 234 584 1.36e-77 252
Msa1051730 MtrunA17_Chr6g0476041 34.153 366 225 6 69 423 157 517 1.26e-75 245
Msa1051730 MtrunA17_Chr1g0175671 31.358 405 222 13 52 423 131 512 2.02e-54 189
Msa1051730 MtrunA17_Chr7g0258851 31.566 396 230 11 53 432 229 599 3.53e-51 182
Msa1051730 MtrunA17_Chr2g0287901 32.967 364 199 13 79 420 97 437 5.97e-49 173
Msa1051730 MtrunA17_Chr7g0259711 30.447 358 217 11 79 420 91 432 5.47e-48 170
Msa1051730 MtrunA17_Chr4g0071391 29.457 387 231 12 60 427 90 453 9.62e-48 169
Msa1051730 MtrunA17_Chr5g0413271 32.213 357 206 12 77 420 143 476 1.58e-47 170
Msa1051730 MtrunA17_Chr5g0430371 31.742 356 207 12 79 416 58 395 4.44e-45 161
Msa1051730 MtrunA17_Chr3g0105301 29.023 348 227 8 79 420 43 376 3.95e-44 158
Msa1051730 MtrunA17_Chr5g0414081 36.967 211 119 7 232 432 2 208 1.35e-43 152
Msa1051730 MtrunA17_Chr8g0368461 31.989 372 207 12 78 421 177 530 1.91e-43 159
Msa1051730 MtrunA17_Chr7g0269991 30.337 356 211 11 79 421 137 468 4.16e-42 155
Msa1051730 MtrunA17_Chr7g0243301 30.790 367 222 15 68 416 53 405 3.39e-41 151
Msa1051730 MtrunA17_Chr8g0360521 26.559 433 274 11 8 420 1 409 3.44e-41 151
Msa1051730 MtrunA17_Chr3g0113671 30.682 352 218 9 79 416 106 445 5.25e-41 151
Msa1051730 MtrunA17_Chr8g0384151 29.444 360 215 14 76 423 87 419 1.92e-40 149
Msa1051730 MtrunA17_Chr4g0049421 28.219 365 219 8 79 420 48 392 2.66e-40 148
Msa1051730 MtrunA17_Chr4g0005491 30.387 362 226 12 70 416 53 403 2.71e-40 149
Msa1051730 MtrunA17_Chr1g0213281 29.888 358 218 9 79 420 175 515 5.36e-40 150
Msa1051730 MtrunA17_Chr5g0437601 29.859 355 223 11 79 420 83 424 5.58e-40 148
Msa1051730 MtrunA17_Chr4g0068111 28.037 428 262 13 10 420 55 453 1.14e-39 148
Msa1051730 MtrunA17_Chr3g0114101 29.494 356 223 10 79 420 89 430 7.70e-39 145
Msa1051730 MtrunA17_Chr4g0070341 26.893 383 242 10 56 420 109 471 1.31e-38 145
Msa1051730 MtrunA17_Chr1g0171171 29.379 354 215 11 75 420 49 375 3.57e-38 142
Msa1051730 MtrunA17_Chr4g0006991 29.775 356 226 10 77 420 84 427 7.98e-38 142
Msa1051730 MtrunA17_Chr3g0085071 27.920 351 221 8 70 416 37 359 2.28e-37 139
Msa1051730 MtrunA17_Chr2g0283581 31.054 351 203 11 79 422 42 360 2.71e-37 139
Msa1051730 MtrunA17_Chr6g0455901 27.209 430 264 11 23 427 18 423 4.55e-37 140
Msa1051730 MtrunA17_Chr3g0085081 28.329 353 217 10 70 416 22 344 8.95e-37 137
Msa1051730 MtrunA17_Chr3g0091031 29.014 355 212 10 70 416 22 344 6.68e-36 135
Msa1051730 MtrunA17_Chr2g0325481 28.736 348 205 9 78 416 49 362 1.17e-35 135
Msa1051730 MtrunA17_Chr2g0314801 28.532 361 207 10 75 420 29 353 1.98e-35 134
Msa1051730 MtrunA17_Chr1g0210771 29.213 356 206 14 75 416 55 378 2.08e-35 134
Msa1051730 MtrunA17_Chr8g0384421 26.786 392 235 11 53 420 109 472 4.35e-35 135
Msa1051730 MtrunA17_Chr4g0045951 28.329 353 217 7 76 422 42 364 4.70e-35 133
Msa1051730 MtrunA17_Chr4g0005481 29.730 370 227 11 66 420 95 446 1.13e-34 134
Msa1051730 MtrunA17_Chr7g0242701 30.084 359 221 12 77 420 84 427 2.42e-34 132
Msa1051730 MtrunA17_Chr5g0437291 28.767 365 215 13 77 416 163 507 3.65e-34 133
Msa1051730 MtrunA17_Chr4g0045941 28.367 349 220 9 72 416 24 346 4.43e-34 130
Msa1051730 MtrunA17_Chr5g0413851 30.027 373 215 14 60 420 21 359 1.40e-32 126
Msa1051730 MtrunA17_Chr4g0041011 26.446 363 226 8 66 420 34 363 1.27e-31 124
Msa1051730 MtrunA17_Chr3g0097891 28.779 344 211 10 79 416 31 346 1.75e-31 123
Msa1051730 MtrunA17_Chr3g0126021 24.651 430 262 13 24 420 59 459 3.88e-28 115
Msa1051730 MtrunA17_Chr2g0314791 27.841 352 209 11 79 420 29 345 3.66e-27 111
Msa1051730 MtrunA17_Chr1g0209921 49.462 93 45 2 77 167 42 134 2.03e-22 96.3
Msa1051730 MtrunA17_Chr1g0178081 29.268 205 125 6 62 251 35 234 2.04e-17 83.2
Msa1051730 MtrunA17_Chr1g0178081 33.588 131 72 5 298 420 218 341 1.16e-11 65.9
Msa1051730 MtrunA17_Chr7g0275501 47.692 65 33 1 356 419 4 68 8.07e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051730 AT5G15900.2 59.338 423 162 5 3 423 17 431 0.0 528
Msa1051730 AT5G15900.1 59.524 420 160 5 6 423 1 412 0.0 526
Msa1051730 AT3G02440.2 59.599 349 139 2 79 426 135 482 6.07e-162 466
Msa1051730 AT3G02440.1 59.599 349 139 2 79 426 127 474 9.94e-162 465
Msa1051730 AT5G15890.1 52.206 408 168 6 36 423 125 525 8.52e-159 459
Msa1051730 AT3G28150.1 42.609 345 193 3 79 421 70 411 3.70e-105 318
Msa1051730 AT1G01430.1 38.462 416 233 11 22 420 38 447 1.11e-101 311
Msa1051730 AT4G01080.1 42.424 363 181 8 69 418 81 428 1.49e-99 305
Msa1051730 AT4G23790.1 35.252 417 260 6 12 420 13 427 2.19e-96 296
Msa1051730 AT4G11090.1 34.878 410 253 6 24 420 17 425 5.39e-96 295
Msa1051730 AT1G70230.1 37.116 423 233 9 16 421 6 412 1.15e-93 289
Msa1051730 AT5G51640.1 34.527 391 236 9 53 428 113 498 2.64e-77 249
Msa1051730 AT4G25360.1 33.676 389 238 7 47 423 147 527 1.86e-76 248
Msa1051730 AT4G25360.2 33.676 389 238 7 47 423 147 527 1.86e-76 248
Msa1051730 AT3G06080.2 30.090 442 262 12 20 431 32 456 2.24e-51 180
Msa1051730 AT1G60790.1 34.121 381 196 13 75 427 186 539 2.38e-51 181
Msa1051730 AT5G19160.1 30.243 453 267 14 2 427 22 452 7.81e-51 178
Msa1051730 AT3G12060.1 32.546 381 218 13 75 434 192 554 1.62e-50 179
Msa1051730 AT5G06700.1 32.967 364 210 10 73 420 249 594 1.05e-49 178
Msa1051730 AT5G64470.3 30.337 356 218 8 79 420 55 394 2.42e-49 173
Msa1051730 AT5G64470.2 30.110 362 217 9 79 420 55 400 6.23e-48 169
Msa1051730 AT5G20590.1 30.939 362 219 10 76 423 138 482 7.26e-48 171
Msa1051730 AT2G14530.1 29.008 393 228 13 54 420 39 406 8.83e-47 166
Msa1051730 AT3G62390.1 29.974 387 230 11 44 416 108 467 3.43e-46 166
Msa1051730 AT5G06230.2 30.504 377 216 12 68 420 10 364 2.84e-45 161
Msa1051730 AT5G06230.1 30.504 377 216 12 68 420 51 405 4.90e-45 162
Msa1051730 AT2G30010.1 30.500 400 242 13 34 420 20 396 1.06e-43 158
Msa1051730 AT2G30010.2 30.500 400 242 13 34 420 63 439 1.60e-43 158
Msa1051730 AT3G11570.1 31.412 347 192 12 95 420 98 419 9.83e-43 156
Msa1051730 AT5G64020.1 28.763 372 215 11 79 420 57 408 7.20e-42 153
Msa1051730 AT5G49340.1 31.044 364 213 14 76 420 97 441 3.51e-41 152
Msa1051730 AT2G40320.1 30.704 355 220 11 79 420 81 422 3.71e-40 149
Msa1051730 AT2G40160.2 30.337 356 217 11 79 416 77 419 8.12e-40 148
Msa1051730 AT2G40160.1 30.337 356 217 11 79 416 77 419 1.16e-39 147
Msa1051730 AT2G30900.1 32.153 367 209 14 67 420 26 365 2.19e-39 145
Msa1051730 AT2G40150.1 27.865 384 248 10 47 416 48 416 6.37e-39 145
Msa1051730 AT3G55990.1 28.395 405 243 13 34 416 100 479 9.02e-39 146
Msa1051730 AT1G73140.1 28.877 374 227 9 60 420 58 405 3.53e-38 143
Msa1051730 AT5G19160.2 30.211 331 195 8 2 313 22 335 7.81e-38 141
Msa1051730 AT5G58600.1 29.444 360 211 12 79 420 66 400 8.16e-38 142
Msa1051730 AT3G11030.1 29.132 357 224 11 79 420 106 448 1.82e-36 139
Msa1051730 AT5G01620.2 29.640 361 218 13 77 420 108 449 1.93e-36 139
Msa1051730 AT5G01620.1 29.640 361 218 13 77 420 108 449 1.93e-36 139
Msa1051730 AT5G01620.3 29.640 361 218 13 77 420 116 457 2.05e-36 139
Msa1051730 AT2G34070.1 27.586 348 221 10 79 422 65 385 1.94e-35 135
Msa1051730 AT5G64470.1 30.147 272 166 6 79 336 55 316 2.48e-35 133
Msa1051730 AT1G29050.1 27.299 348 221 9 79 422 61 380 4.40e-35 134
Msa1051730 AT5G01360.2 26.667 360 233 10 77 420 34 378 4.60e-35 134
Msa1051730 AT1G48880.1 27.536 414 254 16 27 426 64 445 5.65e-35 135
Msa1051730 AT2G37720.1 26.933 375 212 13 76 420 140 482 9.12e-35 135
Msa1051730 AT5G64470.4 29.889 271 166 6 79 335 55 315 1.03e-34 131
Msa1051730 AT5G01360.1 26.667 360 233 10 77 420 90 434 1.04e-34 134
Msa1051730 AT2G38320.1 28.873 426 254 18 8 416 7 400 1.80e-34 133
Msa1051730 AT3G06080.1 30.599 317 188 8 20 313 32 339 2.84e-34 131
Msa1051730 AT3G14850.2 28.205 351 213 10 79 420 34 354 3.31e-34 131
Msa1051730 AT5G20680.6 25.063 395 220 12 63 420 102 457 2.71e-32 128
Msa1051730 AT2G42570.1 29.513 349 210 9 78 420 46 364 2.84e-32 126
Msa1051730 AT5G20680.4 25.063 395 220 12 63 420 196 551 3.60e-32 129
Msa1051730 AT5G20680.1 25.063 395 220 12 63 420 196 551 3.60e-32 129
Msa1051730 AT5G20680.3 25.063 395 220 12 63 420 196 551 3.60e-32 129
Msa1051730 AT5G20680.5 25.063 395 220 12 63 420 196 551 3.60e-32 129
Msa1051730 AT5G20680.2 25.063 395 220 12 63 420 178 533 4.51e-32 128
Msa1051730 AT3G54260.1 27.027 370 238 8 63 425 35 379 8.09e-32 125
Msa1051730 AT1G78710.1 28.729 362 197 13 78 420 37 356 9.54e-32 124
Msa1051730 AT5G20590.2 31.855 248 151 6 76 313 138 377 2.64e-30 121
Msa1051730 AT3G62390.2 28.772 285 172 8 44 315 108 374 5.58e-29 118
Msa1051730 AT2G31110.2 27.299 348 225 9 75 420 41 362 7.57e-29 116
Msa1051730 AT2G38320.2 29.630 324 199 13 109 416 7 317 1.78e-28 115
Msa1051730 AT2G40160.3 31.535 241 153 6 79 313 77 311 1.21e-27 112
Msa1051730 AT5G58600.2 30.544 239 146 7 79 312 66 289 2.33e-27 110
Msa1051730 AT5G06230.3 28.938 273 154 9 68 316 51 307 4.52e-27 110
Msa1051730 AT2G30900.2 35.417 192 106 6 67 250 26 207 1.68e-24 102
Msa1051730 AT1G78710.2 31.220 205 117 8 78 274 30 218 1.19e-18 86.7
Msa1051730 AT2G31110.3 30.114 176 114 4 78 253 44 210 3.54e-18 84.7
Msa1051730 AT2G34070.2 24.549 277 178 10 150 422 2 251 5.06e-14 72.0
Msa1051730 AT3G14850.1 25.000 276 168 10 150 416 2 247 6.85e-13 68.9

Find 107 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTCCTTAAATTATTTA+TGG 0.088346 7_2:+19308108 None:intergenic
TTAAAGCCATAAATAATTTA+AGG 0.137666 7_2:-19308114 Msa1051730:CDS
TTCCATACTTCATACAATTT+TGG 0.167650 7_2:+19312306 None:intergenic
TCTTGATTTGGTCTAGATTA+TGG 0.187478 7_2:+19312758 None:intergenic
TGCCTTCAACTTCTATAAAA+AGG 0.192447 7_2:-19312412 Msa1051730:CDS
CATGCAGGTGGTAAAATCTT+AGG 0.211139 7_2:-19312892 None:intergenic
ATTGCTAGTAATGTTACTTT+TGG 0.238498 7_2:+19312566 None:intergenic
ATGATATAGTTCTCTTGATT+TGG 0.277015 7_2:+19312746 None:intergenic
TTAAGGGCATAACATTTCTT+AGG 0.279666 7_2:-19308087 Msa1051730:CDS
TGTGTTTCATTGCTTCTAAA+TGG 0.304661 7_2:+19307998 None:intergenic
CAAGCTATGGAACTTCTCTT+TGG 0.318342 7_2:-19312614 Msa1051730:CDS
GATGAAGGATTTCTAAATAA+AGG 0.319542 7_2:+19312503 None:intergenic
CACCAAAATTGTATGAAGTA+TGG 0.320072 7_2:-19312308 Msa1051730:CDS
AATTGTGAGGGGAAAATCTA+TGG 0.332595 7_2:-19312201 Msa1051730:CDS
TTTGTGTAATATGGTGCTTT+TGG 0.339891 7_2:+19312356 None:intergenic
TTCGATTATGTTATTCTCAA+TGG 0.340916 7_2:-19308268 Msa1051730:CDS
CAGATTCTGATTACTTGAAA+TGG 0.348611 7_2:-19312280 Msa1051730:CDS
ATCTATTATTAATGTATTTG+AGG 0.350705 7_2:+19312822 None:intergenic
GATGGGCACCCTAGTAAATA+TGG 0.352672 7_2:-19307845 Msa1051730:CDS
TGTGTGCATTGGTGCTTGCC+TGG 0.353744 7_2:-19307785 Msa1051730:CDS
CATTTCAAGTAATCAGAATC+TGG 0.355358 7_2:+19312281 None:intergenic
TCAAAAGAATCAGATTTAAA+AGG 0.364200 7_2:-19308364 Msa1051730:CDS
CCATGGTACATGGTTAAATC+AGG 0.371275 7_2:+19308163 None:intergenic
AAGCAATGAAACACAATTAG+AGG 0.374389 7_2:-19307990 Msa1051730:CDS
CTGATTACTTGAAATGGAAA+TGG 0.375338 7_2:-19312274 Msa1051730:CDS
TTAAAAGGTCCAGGTTCAAC+TGG 0.378193 7_2:-19308349 Msa1051730:CDS
AAGAGTGACAAGAATAGAAA+AGG 0.386231 7_2:+19312655 None:intergenic
GTATTTGAGGTTCTAGAGTA+AGG 0.390859 7_2:+19312835 None:intergenic
GGAGTTCAAAATTGCTGAAA+AGG 0.392714 7_2:-19307933 Msa1051730:CDS
AAACATCACACCAATAATAT+AGG 0.393461 7_2:+19307589 None:intergenic
TTACAAGCTAGATGAAAATT+CGG 0.397770 7_2:+19307491 None:intergenic
GAAAATGGGTTATGGAATCA+AGG 0.409487 7_2:-19308043 Msa1051730:CDS
TACAATGTCACATTCTCATT+AGG 0.411907 7_2:+19307815 None:intergenic
ATGAAGGATTTCTAAATAAA+GGG 0.415418 7_2:+19312504 None:intergenic
CTTGTTAGATATGTTGAAGA+TGG 0.416171 7_2:-19307738 Msa1051730:CDS
GGCCAATGTCCATATTTACT+AGG 0.417433 7_2:+19307836 None:intergenic
CCATGATTTGCCTACTATCA+AGG 0.419418 7_2:-19312139 Msa1051730:CDS
AAATCACTCCATGTGTCAAT+AGG 0.422336 7_2:+19307761 None:intergenic
AGAGGCCATTGTGAAATTGT+AGG 0.427604 7_2:+19308411 None:intergenic
TATTTACTAGGGTGCCCATC+TGG 0.431629 7_2:+19307848 None:intergenic
ATGGTTATAGAAGAGCATTT+AGG 0.434534 7_2:-19308144 Msa1051730:CDS
AAATGCAGTGGATGGTTGAT+TGG 0.444149 7_2:+19312460 None:intergenic
ATAGGAAGGTCACAGCCATT+TGG 0.445269 7_2:+19312248 None:intergenic
ATGCAGGTGGTAAAATCTTA+GGG 0.448235 7_2:-19312891 None:intergenic
ATACATTAATAATAGATAGA+TGG 0.450456 7_2:-19312816 Msa1051730:five_prime_UTR
CAAAGAGAAGTTCCATAGCT+TGG 0.453408 7_2:+19312615 None:intergenic
CCATTGTGAAATTGTAGGTT+GGG 0.455960 7_2:+19308416 None:intergenic
CTAAATGAAGTTCCAAGCTA+TGG 0.465970 7_2:-19312627 Msa1051730:exon
TCTTCAGTGGAGATTACTTA+CGG 0.466024 7_2:+19307553 None:intergenic
CTAAATAAAGGGTAGGATAG+TGG 0.471242 7_2:+19312515 None:intergenic
CAAGAATAGAAAAGGGCATA+GGG 0.481517 7_2:+19312663 None:intergenic
CCTTGATAGTAGGCAAATCA+TGG 0.481934 7_2:+19312139 None:intergenic
TTACACAAACAAAACATGTT+GGG 0.484375 7_2:-19312342 Msa1051730:CDS
ACAATTTCAAGAAACTGAAA+AGG 0.484760 7_2:+19312218 None:intergenic
AACTGAAAAGGATTGAATAT+AGG 0.487467 7_2:+19312230 None:intergenic
AAGCTAGATGAAAATTCGGC+TGG 0.490718 7_2:+19307495 None:intergenic
TTCAGTTTCTTGAAATTGTG+AGG 0.497540 7_2:-19312214 Msa1051730:CDS
GAATCAGATTTAAAAGGTCC+AGG 0.503947 7_2:-19308358 Msa1051730:CDS
CAGTGGAGATTACTTACGGC+TGG 0.505533 7_2:+19307557 None:intergenic
AAGAATCTGTGGGGCATACA+TGG 0.506563 7_2:-19307534 Msa1051730:three_prime_UTR
AGAGTGACAAGAATAGAAAA+GGG 0.507306 7_2:+19312656 None:intergenic
TCGAAGAGTCCAGTTGAACC+TGG 0.509975 7_2:+19308340 None:intergenic
ATTACACAAACAAAACATGT+TGG 0.513699 7_2:-19312343 Msa1051730:CDS
ACATTGGTTTACAAGATCAA+TGG 0.514035 7_2:-19308242 Msa1051730:CDS
GCAACAATGTTGAGGCCAGA+TGG 0.516688 7_2:-19307863 Msa1051730:CDS
CAACAATGTTGAGGCCAGAT+GGG 0.527334 7_2:-19307862 Msa1051730:CDS
CTCCATGTGTCAATAGGTCC+AGG 0.529330 7_2:+19307767 None:intergenic
GAAGTGTTACCCTTGATAGT+AGG 0.530829 7_2:+19312129 None:intergenic
GCCAATGTCCATATTTACTA+GGG 0.531584 7_2:+19307837 None:intergenic
GCCATTGTGAAATTGTAGGT+TGG 0.533454 7_2:+19308415 None:intergenic
TGCGAGTGTGATACAACTAC+GGG 0.539130 7_2:+19308466 None:intergenic
ATGGGTTATGGAATCAAGGT+GGG 0.542229 7_2:-19308039 Msa1051730:CDS
AAATGGAAATGGAAACCAAA+TGG 0.545755 7_2:-19312263 Msa1051730:CDS
AAATCATCAAATGCAGTGGA+TGG 0.547828 7_2:+19312452 None:intergenic
TTGCGAGTGTGATACAACTA+CGG 0.552850 7_2:+19308465 None:intergenic
TATTTGAGGTTCTAGAGTAA+GGG 0.553195 7_2:+19312836 None:intergenic
GTTAGATATGTTGAAGATGG+AGG 0.553797 7_2:-19307735 Msa1051730:CDS
TCAGTTTCTTGAAATTGTGA+GGG 0.555588 7_2:-19312213 Msa1051730:CDS
ATTTAAATCATCAAATGCAG+TGG 0.560828 7_2:+19312448 None:intergenic
CATGATTTGCCTACTATCAA+GGG 0.561143 7_2:-19312138 Msa1051730:intron
TAAATGCTCTTCTATAACCA+TGG 0.564995 7_2:+19308146 None:intergenic
ACAAGAATAGAAAAGGGCAT+AGG 0.566263 7_2:+19312662 None:intergenic
TCTTCTATAACCATGGTACA+TGG 0.570506 7_2:+19308153 None:intergenic
TTATTCTCAATGGAGGACAT+TGG 0.571639 7_2:-19308258 Msa1051730:CDS
AATCTCCACTGAAGAATCTG+TGG 0.574941 7_2:-19307545 Msa1051730:three_prime_UTR
TGTATAATGATTGTGTGCAT+TGG 0.576508 7_2:-19307796 Msa1051730:CDS
AGCAATGAAACACAATTAGA+GGG 0.580001 7_2:-19307989 Msa1051730:CDS
ATCTCCACTGAAGAATCTGT+GGG 0.580350 7_2:-19307544 Msa1051730:three_prime_UTR
CATGGTACATGGTTAAATCA+GGG 0.583701 7_2:+19308164 None:intergenic
AGGATTTCTAAATAAAGGGT+AGG 0.589350 7_2:+19312508 None:intergenic
CAGTTTCTTGAAATTGTGAG+GGG 0.593200 7_2:-19312212 Msa1051730:CDS
AGCTAGATGAAAATTCGGCT+GGG 0.594972 7_2:+19307496 None:intergenic
GATTATGTTATTCTCAATGG+AGG 0.596473 7_2:-19308265 Msa1051730:CDS
GAAAAGGATTGAATATAGGA+AGG 0.600716 7_2:+19312234 None:intergenic
ACCCTAGTAAATATGGACAT+TGG 0.627120 7_2:-19307838 Msa1051730:CDS
TTAGATATGTTGAAGATGGA+GGG 0.636258 7_2:-19307734 Msa1051730:CDS
TGCCTGGACCTATTGACACA+TGG 0.638249 7_2:-19307769 Msa1051730:CDS
GGAGATTACTTACGGCTGGA+CGG 0.650491 7_2:+19307561 None:intergenic
AATGGGTTATGGAATCAAGG+TGG 0.651885 7_2:-19308040 Msa1051730:CDS
GCATAGGGGATGAAGACTTG+TGG 0.654321 7_2:+19312678 None:intergenic
AAGAATAGAAAAGGGCATAG+GGG 0.658791 7_2:+19312664 None:intergenic
CAACACAAGCAACAATGTTG+AGG 0.661127 7_2:-19307871 Msa1051730:CDS
AAAATGATTATTTCATGACG+TGG 0.663129 7_2:-19308444 Msa1051730:CDS
CCTGATTTAACCATGTACCA+TGG 0.663940 7_2:-19308163 Msa1051730:CDS
CCCAACCTACAATTTCACAA+TGG 0.687339 7_2:-19308416 Msa1051730:CDS
ATGCCCCACAGATTCTTCAG+TGG 0.706493 7_2:+19307540 None:intergenic
TCTCCACTGAAGAATCTGTG+GGG 0.770861 7_2:-19307543 Msa1051730:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAATTATGG+TGG + chr7_2:19308487-19308506 None:intergenic 10.0%
!! AGGTAAAAAAAAAAAAATTA+TGG + chr7_2:19308490-19308509 None:intergenic 10.0%
!! ATTATTTAATAAAGTATAGT+TGG + chr7_2:19308568-19308587 None:intergenic 10.0%
!! TAATATGGTTAAAAAATTTA+GGG + chr7_2:19309759-19309778 None:intergenic 10.0%
!! TTAAATTACAAATTCTAATA+TGG + chr7_2:19309774-19309793 None:intergenic 10.0%
!!! TTTGCTAATATTTTATATAA+AGG - chr7_2:19310061-19310080 Msa1051730:intron 10.0%
!!! TTGCTAATATTTTATATAAA+GGG - chr7_2:19310062-19310081 Msa1051730:intron 10.0%
!! ACAAATAAAATAAAATCATA+CGG - chr7_2:19310211-19310230 Msa1051730:intron 10.0%
!!! AACTATAATTTTTTAATTAG+GGG - chr7_2:19311260-19311279 Msa1051730:intron 10.0%
!! GATATTAAAAGATAAATTAA+AGG + chr7_2:19311531-19311550 None:intergenic 10.0%
!! AAAATTCCTTAAATTATTTA+TGG + chr7_2:19312184-19312203 None:intergenic 10.0%
!!! AAATAATTTAAGGAATTTTA+AGG - chr7_2:19312185-19312204 Msa1051730:CDS 10.0%
!!! AATAATTTAAGGAATTTTAA+GGG - chr7_2:19312186-19312205 Msa1051730:CDS 10.0%
!!! TTTATTTTTTCCTATATTAT+TGG - chr7_2:19312690-19312709 Msa1051730:five_prime_UTR 10.0%
!! ATCTATTATTAATGTATTTG+AGG + chr7_2:19307470-19307489 None:intergenic 15.0%
!! ATACATTAATAATAGATAGA+TGG - chr7_2:19307473-19307492 Msa1051730:three_prime_UTR 15.0%
!! CTAATATTTAAACATTGAAA+AGG + chr7_2:19308195-19308214 None:intergenic 15.0%
!!! GCAAAATTTATAAATTTTCT+TGG - chr7_2:19308706-19308725 Msa1051730:intron 15.0%
!! AATAACATTGCTTATAATTA+GGG + chr7_2:19309000-19309019 None:intergenic 15.0%
!! AAATAACATTGCTTATAATT+AGG + chr7_2:19309001-19309020 None:intergenic 15.0%
!! TATATTGTAGTAATTAATGA+TGG + chr7_2:19309076-19309095 None:intergenic 15.0%
!!! CATTTAACTTTTTTTTTTGA+GGG + chr7_2:19309234-19309253 None:intergenic 15.0%
!!! ACATTTAACTTTTTTTTTTG+AGG + chr7_2:19309235-19309254 None:intergenic 15.0%
!! AAACAAGTTGTTATAAAAAA+AGG + chr7_2:19309296-19309315 None:intergenic 15.0%
!! ATTTATTTACCTAATACTAT+TGG + chr7_2:19309570-19309589 None:intergenic 15.0%
!! TCAAATAAAATTAATGTGAT+GGG + chr7_2:19309679-19309698 None:intergenic 15.0%
!!! AAAATTTAGGGTTTATAATA+TGG + chr7_2:19309747-19309766 None:intergenic 15.0%
!! CTAATATGGTTAAAAAATTT+AGG + chr7_2:19309760-19309779 None:intergenic 15.0%
!! ATTTGATATAAAACTACAAA+AGG + chr7_2:19310111-19310130 None:intergenic 15.0%
!!! CATTTTTTTTAATGATTTTG+TGG + chr7_2:19310521-19310540 None:intergenic 15.0%
!! ATCTAAATAAAATAATTGAG+TGG + chr7_2:19310746-19310765 None:intergenic 15.0%
!! GATATTTAGATATGTATTAT+TGG - chr7_2:19310763-19310782 Msa1051730:intron 15.0%
!! ATAAAATAATTTGAAAAGCT+TGG - chr7_2:19310992-19311011 Msa1051730:intron 15.0%
!! TAAATTCATCAAGATTTAAT+CGG - chr7_2:19311424-19311443 Msa1051730:intron 15.0%
!!! ACATTTACTTTTATATATCA+TGG - chr7_2:19311672-19311691 Msa1051730:intron 15.0%
!!! TATATCATGGTTTATATTTT+TGG - chr7_2:19311685-19311704 Msa1051730:intron 15.0%
!! TTGTGTTAATACTAATTATA+AGG + chr7_2:19311758-19311777 None:intergenic 15.0%
!! AATAATAAAGATTAAGCAAA+AGG + chr7_2:19311789-19311808 None:intergenic 15.0%
!! TTAAAGCCATAAATAATTTA+AGG - chr7_2:19312175-19312194 Msa1051730:CDS 15.0%
!!! ATCAATTTTAATATGTAATC+TGG - chr7_2:19312658-19312677 Msa1051730:five_prime_UTR 15.0%
!! ATGAAGGATTTCTAAATAAA+GGG + chr7_2:19307788-19307807 None:intergenic 20.0%
!!! GGTTTTTTTAATGTTTTTCA+AGG + chr7_2:19307811-19307830 None:intergenic 20.0%
!!! ATTTCTTTTGAGAAATAGAA+TGG - chr7_2:19308358-19308377 Msa1051730:CDS 20.0%
!! ATTGAATTTAGCTAATCTAA+AGG + chr7_2:19308393-19308412 None:intergenic 20.0%
!! TAGTAACAAATTCTGAATTT+AGG + chr7_2:19308510-19308529 None:intergenic 20.0%
!!! AATAATTGACCTCTTTTTTA+GGG + chr7_2:19308789-19308808 None:intergenic 20.0%
!!! AAATAATTGACCTCTTTTTT+AGG + chr7_2:19308790-19308809 None:intergenic 20.0%
!!! TTTGTTTTTGTTGATGAATT+TGG - chr7_2:19309018-19309037 Msa1051730:intron 20.0%
!!! CTCATGTTATATTTTTTTGA+CGG + chr7_2:19309364-19309383 None:intergenic 20.0%
!! TATCATACATGTGAAAATAT+GGG - chr7_2:19309400-19309419 Msa1051730:intron 20.0%
!! TAGGTAAATAAATCATCAAA+TGG - chr7_2:19309577-19309596 Msa1051730:intron 20.0%
!! GTCAAATAAAATTAATGTGA+TGG + chr7_2:19309680-19309699 None:intergenic 20.0%
!! ATATAAAACTACAAAAGGAT+GGG + chr7_2:19310106-19310125 None:intergenic 20.0%
!! CTAAACCAAAATAATAGAAA+TGG - chr7_2:19310321-19310340 Msa1051730:intron 20.0%
!!! TTGCTTATTTTTCTACTTTA+AGG + chr7_2:19310362-19310381 None:intergenic 20.0%
!!! TAATGCAATATTAATTTGCA+TGG - chr7_2:19310645-19310664 Msa1051730:intron 20.0%
!! ACTAATTAACACTAATTATG+TGG + chr7_2:19310691-19310710 None:intergenic 20.0%
!!! TTAGTGTTAATTAGTTTGAA+AGG - chr7_2:19310696-19310715 Msa1051730:intron 20.0%
!!! TTTTTTTTTCCTTTTCACTT+GGG - chr7_2:19310894-19310913 Msa1051730:intron 20.0%
!! ATGGCTTAAAATAATAAAGT+AGG - chr7_2:19310928-19310947 Msa1051730:intron 20.0%
!! AAATAATAAAGTAGGCTAAA+AGG - chr7_2:19310936-19310955 Msa1051730:intron 20.0%
!!! TATAATTTTTTAATTAGGGG+TGG - chr7_2:19311263-19311282 Msa1051730:intron 20.0%
!! GTTAGCTATATAAATTATGT+TGG + chr7_2:19311396-19311415 None:intergenic 20.0%
!! TTTAAAAGAAGAAAAGCTTA+AGG + chr7_2:19311614-19311633 None:intergenic 20.0%
!!! AAGCTTTTCTTCTTTTAAAA+TGG - chr7_2:19311615-19311634 Msa1051730:intron 20.0%
!!! TTTTGGTAGATTATATTGTA+TGG - chr7_2:19311702-19311721 Msa1051730:intron 20.0%
!!! GCTTAATCTTTATTATTTTC+AGG - chr7_2:19311792-19311811 Msa1051730:intron 20.0%
!!! TAATCTTTATTATTTTCAGG+TGG - chr7_2:19311795-19311814 Msa1051730:intron 20.0%
!! TCAAAAGAATCAGATTTAAA+AGG - chr7_2:19311925-19311944 Msa1051730:intron 20.0%
!!! AGAGTTTTATATGATTCAAT+TGG - chr7_2:19312332-19312351 Msa1051730:CDS 20.0%
! ATGATATAGTTCTCTTGATT+TGG + chr7_2:19307546-19307565 None:intergenic 25.0%
!!! ACTTTTGGAATCATTTGTTT+TGG + chr7_2:19307711-19307730 None:intergenic 25.0%
!!! ATTGCTAGTAATGTTACTTT+TGG + chr7_2:19307726-19307745 None:intergenic 25.0%
! GATGAAGGATTTCTAAATAA+AGG + chr7_2:19307789-19307808 None:intergenic 25.0%
!!! TTAATGTTTTTCAAGGATGA+AGG + chr7_2:19307804-19307823 None:intergenic 25.0%
! ATTTAAATCATCAAATGCAG+TGG + chr7_2:19307844-19307863 None:intergenic 25.0%
!!! CATGTTTTGTTTGTGTAATA+TGG + chr7_2:19307945-19307964 None:intergenic 25.0%
! ATTACACAAACAAAACATGT+TGG - chr7_2:19307946-19307965 Msa1051730:CDS 25.0%
! TTACACAAACAAAACATGTT+GGG - chr7_2:19307947-19307966 Msa1051730:CDS 25.0%
!! TTCCATACTTCATACAATTT+TGG + chr7_2:19307986-19308005 None:intergenic 25.0%
! AACTGAAAAGGATTGAATAT+AGG + chr7_2:19308062-19308081 None:intergenic 25.0%
! ACAATTTCAAGAAACTGAAA+AGG + chr7_2:19308074-19308093 None:intergenic 25.0%
! TTAAACATTGAAAAGGTCAA+GGG + chr7_2:19308188-19308207 None:intergenic 25.0%
! TTTAAACATTGAAAAGGTCA+AGG + chr7_2:19308189-19308208 None:intergenic 25.0%
!! AGTTTTTGTTAATATCACAC+TGG - chr7_2:19308247-19308266 Msa1051730:CDS 25.0%
! AAAAAAAAAATTATGGTGGC+CGG + chr7_2:19308483-19308502 None:intergenic 25.0%
! AATTTATTCCCCTAAAAAAG+AGG - chr7_2:19308777-19308796 Msa1051730:intron 25.0%
!!! ATAATTGACCTCTTTTTTAG+GGG + chr7_2:19308788-19308807 None:intergenic 25.0%
! CTTATAATTAGGGACAAAAA+GGG + chr7_2:19308990-19309009 None:intergenic 25.0%
!!! TAGTTTTGAAATCATGGTTT+TGG + chr7_2:19309045-19309064 None:intergenic 25.0%
! AAAACCATGATTTCAAAACT+AGG - chr7_2:19309044-19309063 Msa1051730:intron 25.0%
! AAACCATGATTTCAAAACTA+GGG - chr7_2:19309045-19309064 Msa1051730:intron 25.0%
!!! TGTTATATTTTTTTGACGGT+GGG + chr7_2:19309360-19309379 None:intergenic 25.0%
!!! ATGTTATATTTTTTTGACGG+TGG + chr7_2:19309361-19309380 None:intergenic 25.0%
! GTATCATACATGTGAAAATA+TGG - chr7_2:19309399-19309418 Msa1051730:intron 25.0%
! ATCATACATGTGAAAATATG+GGG - chr7_2:19309401-19309420 Msa1051730:intron 25.0%
! ATACTATTGGATCGAATTAT+GGG + chr7_2:19309557-19309576 None:intergenic 25.0%
! AATACTATTGGATCGAATTA+TGG + chr7_2:19309558-19309577 None:intergenic 25.0%
! TAATTCGATCCAATAGTATT+AGG - chr7_2:19309558-19309577 Msa1051730:intron 25.0%
! ATAAACTTAAGTGCAAGTTT+AGG + chr7_2:19309986-19310005 None:intergenic 25.0%
! GATATAAAACTACAAAAGGA+TGG + chr7_2:19310107-19310126 None:intergenic 25.0%
!! TATTCCTACTAATTTGCATA+TGG - chr7_2:19310146-19310165 Msa1051730:intron 25.0%
! CAAACATATAGTATCAAACA+AGG + chr7_2:19310178-19310197 None:intergenic 25.0%
!!! ATTTTAGGTTCATTGTCATA+TGG + chr7_2:19310262-19310281 None:intergenic 25.0%
!! CTCAACCATTTCTATTATTT+TGG + chr7_2:19310329-19310348 None:intergenic 25.0%
! AAATAATAGAAATGGTTGAG+AGG - chr7_2:19310329-19310348 Msa1051730:intron 25.0%
! TACTACTACTATCAATGTAA+AGG - chr7_2:19310469-19310488 Msa1051730:intron 25.0%
! ATCAATGTAAAGGTTTACTA+TGG - chr7_2:19310479-19310498 Msa1051730:intron 25.0%
! ATGGAAGGAAATAAAAACAA+AGG - chr7_2:19310664-19310683 Msa1051730:intron 25.0%
!!! GTTTTTTTTTCCTTTTCACT+TGG - chr7_2:19310893-19310912 Msa1051730:intron 25.0%
! GCTAAAAGGAATGATTTAAA+AGG - chr7_2:19310950-19310969 Msa1051730:intron 25.0%
!!! TTTATTATTTTCAGGTGGAA+TGG - chr7_2:19311800-19311819 Msa1051730:intron 25.0%
! AAAATGATTATTTCATGACG+TGG - chr7_2:19311845-19311864 Msa1051730:intron 25.0%
!! TTCTTTTGATCTTACCAAAT+GGG + chr7_2:19311914-19311933 None:intergenic 25.0%
!! ATTCTTTTGATCTTACCAAA+TGG + chr7_2:19311915-19311934 None:intergenic 25.0%
! TTCGATTATGTTATTCTCAA+TGG - chr7_2:19312021-19312040 Msa1051730:intron 25.0%
! TACGAGAAACAAAAAATTGT+TGG - chr7_2:19312075-19312094 Msa1051730:intron 25.0%
!! GTTTTATATGATTCAATTGG+AGG - chr7_2:19312335-19312354 Msa1051730:CDS 25.0%
! AAACATCACACCAATAATAT+AGG + chr7_2:19312703-19312722 None:intergenic 25.0%
! TTACAAGCTAGATGAAAATT+CGG + chr7_2:19312801-19312820 None:intergenic 25.0%
!! TATTTGAGGTTCTAGAGTAA+GGG + chr7_2:19307456-19307475 None:intergenic 30.0%
!! TCTTGATTTGGTCTAGATTA+TGG + chr7_2:19307534-19307553 None:intergenic 30.0%
AGAGTGACAAGAATAGAAAA+GGG + chr7_2:19307636-19307655 None:intergenic 30.0%
AAGAGTGACAAGAATAGAAA+AGG + chr7_2:19307637-19307656 None:intergenic 30.0%
AGGATTTCTAAATAAAGGGT+AGG + chr7_2:19307784-19307803 None:intergenic 30.0%
TGCCTTCAACTTCTATAAAA+AGG - chr7_2:19307877-19307896 Msa1051730:CDS 30.0%
! CACCTTTTTATAGAAGTTGA+AGG + chr7_2:19307882-19307901 None:intergenic 30.0%
!! AAAAGGTGTGACATTTTTAC+TGG - chr7_2:19307894-19307913 Msa1051730:CDS 30.0%
! TAATATGGTGCTTTTGGATT+TGG + chr7_2:19307930-19307949 None:intergenic 30.0%
! TTTGTGTAATATGGTGCTTT+TGG + chr7_2:19307936-19307955 None:intergenic 30.0%
CACCAAAATTGTATGAAGTA+TGG - chr7_2:19307981-19308000 Msa1051730:CDS 30.0%
! CATTTCAAGTAATCAGAATC+TGG + chr7_2:19308011-19308030 None:intergenic 30.0%
CAGATTCTGATTACTTGAAA+TGG - chr7_2:19308009-19308028 Msa1051730:CDS 30.0%
CTGATTACTTGAAATGGAAA+TGG - chr7_2:19308015-19308034 Msa1051730:CDS 30.0%
AAATGGAAATGGAAACCAAA+TGG - chr7_2:19308026-19308045 Msa1051730:CDS 30.0%
GAAAAGGATTGAATATAGGA+AGG + chr7_2:19308058-19308077 None:intergenic 30.0%
TTCAGTTTCTTGAAATTGTG+AGG - chr7_2:19308075-19308094 Msa1051730:CDS 30.0%
TCAGTTTCTTGAAATTGTGA+GGG - chr7_2:19308076-19308095 Msa1051730:CDS 30.0%
! TGTTAATATCACACTGGTTA+TGG - chr7_2:19308253-19308272 Msa1051730:CDS 30.0%
TTTAGCTAATCTAAAGGTGA+TGG + chr7_2:19308387-19308406 None:intergenic 30.0%
AAAAAAAAATTATGGTGGCC+GGG + chr7_2:19308482-19308501 None:intergenic 30.0%
!! TATAGTTGGCTCTGAATTTA+AGG + chr7_2:19308554-19308573 None:intergenic 30.0%
!! AAAGGGTACAATTTTACTCT+TGG + chr7_2:19308973-19308992 None:intergenic 30.0%
GCTTATAATTAGGGACAAAA+AGG + chr7_2:19308991-19309010 None:intergenic 30.0%
!!! TTTCCCTAGTTTTGAAATCA+TGG + chr7_2:19309051-19309070 None:intergenic 30.0%
CAATATACAGCTGGTTAATT+AGG + chr7_2:19309447-19309466 None:intergenic 30.0%
AATGTCCATATGCATTTCAA+GGG - chr7_2:19309627-19309646 Msa1051730:intron 30.0%
TAGTCAAGCATTTGAATTAG+TGG + chr7_2:19309855-19309874 None:intergenic 30.0%
TCATGTCTAGTAATTCAAAG+AGG + chr7_2:19309957-19309976 None:intergenic 30.0%
! AACTGTTCTATTTTGTGGTT+TGG + chr7_2:19310027-19310046 None:intergenic 30.0%
! TTCTCAACTGTTCTATTTTG+TGG + chr7_2:19310032-19310051 None:intergenic 30.0%
AAGGGAAATAAAACACAAGA+TGG - chr7_2:19310080-19310099 Msa1051730:intron 30.0%
TTAGCCATATGCAAATTAGT+AGG + chr7_2:19310153-19310172 None:intergenic 30.0%
!! GCAATATTAATTTGCATGGA+AGG - chr7_2:19310649-19310668 Msa1051730:intron 30.0%
ATCATATTGTGTGTCTTATG+CGG - chr7_2:19310809-19310828 Msa1051730:intron 30.0%
ATGTAAACAATACTATGTGC+TGG - chr7_2:19310842-19310861 Msa1051730:intron 30.0%
GAGCAATACTAATTTGAAAG+TGG - chr7_2:19311064-19311083 Msa1051730:intron 30.0%
! TGAAAGTGGTGTATTTGTTT+TGG - chr7_2:19311078-19311097 Msa1051730:intron 30.0%
AAAAGCTTAAGGAAATGCTT+CGG + chr7_2:19311603-19311622 None:intergenic 30.0%
GGTAGATTATATTGTATGGT+TGG - chr7_2:19311706-19311725 Msa1051730:intron 30.0%
! TCTTTTGATCTTACCAAATG+GGG + chr7_2:19311913-19311932 None:intergenic 30.0%
!! TGAGTTATCCATTTTTCATC+TGG + chr7_2:19311991-19312010 None:intergenic 30.0%
GATTATGTTATTCTCAATGG+AGG - chr7_2:19312024-19312043 Msa1051730:intron 30.0%
!! ACATTGGTTTACAAGATCAA+TGG - chr7_2:19312047-19312066 Msa1051730:intron 30.0%
TAAATGCTCTTCTATAACCA+TGG + chr7_2:19312146-19312165 None:intergenic 30.0%
!! ATGGTTATAGAAGAGCATTT+AGG - chr7_2:19312145-19312164 Msa1051730:CDS 30.0%
! TTAAGGGCATAACATTTCTT+AGG - chr7_2:19312202-19312221 Msa1051730:CDS 30.0%
!! TCACCATCACATTTTGAAAA+TGG - chr7_2:19312231-19312250 Msa1051730:CDS 30.0%
!! CACCATCACATTTTGAAAAT+GGG - chr7_2:19312232-19312251 Msa1051730:CDS 30.0%
! AACCCATTTTCAAAATGTGA+TGG + chr7_2:19312237-19312256 None:intergenic 30.0%
!!! CACATTTTGAAAATGGGTTA+TGG - chr7_2:19312238-19312257 Msa1051730:CDS 30.0%
TGTGTTTCATTGCTTCTAAA+TGG + chr7_2:19312294-19312313 None:intergenic 30.0%
AAGCAATGAAACACAATTAG+AGG - chr7_2:19312299-19312318 Msa1051730:CDS 30.0%
AGCAATGAAACACAATTAGA+GGG - chr7_2:19312300-19312319 Msa1051730:CDS 30.0%
TGAAAAGGAAGCAAGAAAAA+AGG - chr7_2:19312371-19312390 Msa1051730:CDS 30.0%
GAAAAGGAAGCAAGAAAAAA+GGG - chr7_2:19312372-19312391 Msa1051730:CDS 30.0%
TACAATGTCACATTCTCATT+AGG + chr7_2:19312477-19312496 None:intergenic 30.0%
TGTATAATGATTGTGTGCAT+TGG - chr7_2:19312493-19312512 Msa1051730:CDS 30.0%
CTTGTTAGATATGTTGAAGA+TGG - chr7_2:19312551-19312570 Msa1051730:CDS 30.0%
TTAGATATGTTGAAGATGGA+GGG - chr7_2:19312555-19312574 Msa1051730:CDS 30.0%
!! GTATTTGAGGTTCTAGAGTA+AGG + chr7_2:19307457-19307476 None:intergenic 35.0%
! AAGAATAGAAAAGGGCATAG+GGG + chr7_2:19307628-19307647 None:intergenic 35.0%
! CAAGAATAGAAAAGGGCATA+GGG + chr7_2:19307629-19307648 None:intergenic 35.0%
! ACAAGAATAGAAAAGGGCAT+AGG + chr7_2:19307630-19307649 None:intergenic 35.0%
CTAAATGAAGTTCCAAGCTA+TGG - chr7_2:19307662-19307681 Msa1051730:three_prime_UTR 35.0%
CTAAATAAAGGGTAGGATAG+TGG + chr7_2:19307777-19307796 None:intergenic 35.0%
AAATCATCAAATGCAGTGGA+TGG + chr7_2:19307840-19307859 None:intergenic 35.0%
! TGACATTTTTACTGGTGAGT+GGG - chr7_2:19307902-19307921 Msa1051730:CDS 35.0%
CAGTTTCTTGAAATTGTGAG+GGG - chr7_2:19308077-19308096 Msa1051730:CDS 35.0%
AATTGTGAGGGGAAAATCTA+TGG - chr7_2:19308088-19308107 Msa1051730:CDS 35.0%
! GGAAAATCTATGGCTTTTGT+TGG - chr7_2:19308098-19308117 Msa1051730:CDS 35.0%
! CATGATTTGCCTACTATCAA+GGG - chr7_2:19308151-19308170 Msa1051730:CDS 35.0%
! CTGGTTATGGCTTTTAACAA+TGG - chr7_2:19308266-19308285 Msa1051730:CDS 35.0%
ATAATATGTGCAAGGTCTCT+GGG - chr7_2:19308448-19308467 Msa1051730:CDS 35.0%
! CAATTTTACTCTTGGAACAC+TGG + chr7_2:19308965-19308984 None:intergenic 35.0%
! GGTGGGATATCTTATGTTTT+CGG + chr7_2:19309343-19309362 None:intergenic 35.0%
GAGTAAAGACAATATACAGC+TGG + chr7_2:19309456-19309475 None:intergenic 35.0%
ACTCCAAAAGTCTTTGTCTT+TGG - chr7_2:19309472-19309491 Msa1051730:intron 35.0%
! AGACCAAAGACAAAGACTTT+TGG + chr7_2:19309478-19309497 None:intergenic 35.0%
!! TCTTTGTCTTTGGTCTTGAT+TGG - chr7_2:19309482-19309501 Msa1051730:intron 35.0%
CATTAGGAAGATGGCAAAAT+AGG + chr7_2:19309514-19309533 None:intergenic 35.0%
! CTATTTTGCCATCTTCCTAA+TGG - chr7_2:19309512-19309531 Msa1051730:intron 35.0%
CAATGTCCATATGCATTTCA+AGG - chr7_2:19309626-19309645 Msa1051730:intron 35.0%
AGATTCCCTTGAAATGCATA+TGG + chr7_2:19309635-19309654 None:intergenic 35.0%
ACAAATTCACCGTTGGATTA+AGG - chr7_2:19309803-19309822 Msa1051730:intron 35.0%
!! TTTTGAGAGCCTTAATCCAA+CGG + chr7_2:19309815-19309834 None:intergenic 35.0%
TGTCTAGTAATTCAAAGAGG+AGG + chr7_2:19309954-19309973 None:intergenic 35.0%
TGAACCTAAAATTAGCCAAG+AGG - chr7_2:19310270-19310289 Msa1051730:intron 35.0%
TTCCAAGTTTGTAACATGCA+TGG - chr7_2:19310868-19310887 Msa1051730:intron 35.0%
! TTTTCTGTTCCCAAGTGAAA+AGG + chr7_2:19310906-19310925 None:intergenic 35.0%
!!! TGGCTCAAGTTTTAGTTTCA+AGG - chr7_2:19311012-19311031 Msa1051730:intron 35.0%
!!! ATTTTTTAATTAGGGGTGGC+AGG - chr7_2:19311267-19311286 Msa1051730:intron 35.0%
CCATTGTGAAATTGTAGGTT+GGG + chr7_2:19311876-19311895 None:intergenic 35.0%
! ATTTCACAATGGCCTCTTTT+TGG - chr7_2:19311884-19311903 Msa1051730:intron 35.0%
GAATCAGATTTAAAAGGTCC+AGG - chr7_2:19311931-19311950 Msa1051730:intron 35.0%
TTGATGAGCCAGATGAAAAA+TGG - chr7_2:19311980-19311999 Msa1051730:intron 35.0%
TTATTCTCAATGGAGGACAT+TGG - chr7_2:19312031-19312050 Msa1051730:intron 35.0%
CATGGTACATGGTTAAATCA+GGG + chr7_2:19312128-19312147 None:intergenic 35.0%
TCTTCTATAACCATGGTACA+TGG + chr7_2:19312139-19312158 None:intergenic 35.0%
!! GAAAATGGGTTATGGAATCA+AGG - chr7_2:19312246-19312265 Msa1051730:CDS 35.0%
GGAGTTCAAAATTGCTGAAA+AGG - chr7_2:19312356-19312375 Msa1051730:CDS 35.0%
ACCCTAGTAAATATGGACAT+TGG - chr7_2:19312451-19312470 Msa1051730:CDS 35.0%
GCCAATGTCCATATTTACTA+GGG + chr7_2:19312455-19312474 None:intergenic 35.0%
AAATCACTCCATGTGTCAAT+AGG + chr7_2:19312531-19312550 None:intergenic 35.0%
GTTAGATATGTTGAAGATGG+AGG - chr7_2:19312554-19312573 Msa1051730:CDS 35.0%
TCTTCAGTGGAGATTACTTA+CGG + chr7_2:19312739-19312758 None:intergenic 35.0%
CAAAGAGAAGTTCCATAGCT+TGG + chr7_2:19307677-19307696 None:intergenic 40.0%
CAAGCTATGGAACTTCTCTT+TGG - chr7_2:19307675-19307694 Msa1051730:exon 40.0%
AAATGCAGTGGATGGTTGAT+TGG + chr7_2:19307832-19307851 None:intergenic 40.0%
! GTGACATTTTTACTGGTGAG+TGG - chr7_2:19307901-19307920 Msa1051730:CDS 40.0%
! CCTTGATAGTAGGCAAATCA+TGG + chr7_2:19308153-19308172 None:intergenic 40.0%
! CCATGATTTGCCTACTATCA+AGG - chr7_2:19308150-19308169 Msa1051730:CDS 40.0%
! GAAGTGTTACCCTTGATAGT+AGG + chr7_2:19308163-19308182 None:intergenic 40.0%
GACAACGCATAATATGTGCA+AGG - chr7_2:19308440-19308459 Msa1051730:CDS 40.0%
CATAATATGTGCAAGGTCTC+TGG - chr7_2:19308447-19308466 Msa1051730:CDS 40.0%
!!! CTTGGAACACTGGCTTTTTT+AGG + chr7_2:19308955-19308974 None:intergenic 40.0%
TTGGATCGAATTATGGGCTT+AGG + chr7_2:19309551-19309570 None:intergenic 40.0%
TCTGTTTCACGTGGTAGATA+AGG + chr7_2:19309717-19309736 None:intergenic 40.0%
GGTTCAAATTCTGTTTCACG+TGG + chr7_2:19309726-19309745 None:intergenic 40.0%
TCATGCAACAAATTCACCGT+TGG - chr7_2:19309796-19309815 Msa1051730:intron 40.0%
! GAAGCCTCTTGGCTAATTTT+AGG + chr7_2:19310277-19310296 None:intergenic 40.0%
CGTTAATAGTTGAAGCCTCT+TGG + chr7_2:19310288-19310307 None:intergenic 40.0%
CTTGATGTGACGACTAATGT+TGG - chr7_2:19310407-19310426 Msa1051730:intron 40.0%
CTCCATGCATGTTACAAACT+TGG + chr7_2:19310873-19310892 None:intergenic 40.0%
CAAGTTTGTAACATGCATGG+AGG - chr7_2:19310871-19310890 Msa1051730:intron 40.0%
CACTTGGGAACAGAAAAACA+TGG - chr7_2:19310909-19310928 Msa1051730:intron 40.0%
CAGTACCTAGATTGGGAAAA+AGG - chr7_2:19311040-19311059 Msa1051730:intron 40.0%
!!! GTGGTGTATTTGTTTTGGAG+TGG - chr7_2:19311083-19311102 Msa1051730:intron 40.0%
AAGGAAATGCTTCGGTTGTT+TGG + chr7_2:19311595-19311614 None:intergenic 40.0%
TTGCGAGTGTGATACAACTA+CGG + chr7_2:19311827-19311846 None:intergenic 40.0%
CCCAACCTACAATTTCACAA+TGG - chr7_2:19311873-19311892 Msa1051730:intron 40.0%
GCCATTGTGAAATTGTAGGT+TGG + chr7_2:19311877-19311896 None:intergenic 40.0%
AGAGGCCATTGTGAAATTGT+AGG + chr7_2:19311881-19311900 None:intergenic 40.0%
TTAAAAGGTCCAGGTTCAAC+TGG - chr7_2:19311940-19311959 Msa1051730:intron 40.0%
CCATGGTACATGGTTAAATC+AGG + chr7_2:19312129-19312148 None:intergenic 40.0%
CCTGATTTAACCATGTACCA+TGG - chr7_2:19312126-19312145 Msa1051730:intron 40.0%
!! AATGGGTTATGGAATCAAGG+TGG - chr7_2:19312249-19312268 Msa1051730:CDS 40.0%
! ATGGGTTATGGAATCAAGGT+GGG - chr7_2:19312250-19312269 Msa1051730:CDS 40.0%
CAACACAAGCAACAATGTTG+AGG - chr7_2:19312418-19312437 Msa1051730:CDS 40.0%
GGCCAATGTCCATATTTACT+AGG + chr7_2:19312456-19312475 None:intergenic 40.0%
AATCTCCACTGAAGAATCTG+TGG - chr7_2:19312744-19312763 Msa1051730:five_prime_UTR 40.0%
ATCTCCACTGAAGAATCTGT+GGG - chr7_2:19312745-19312764 Msa1051730:five_prime_UTR 40.0%
AGCTAGATGAAAATTCGGCT+GGG + chr7_2:19312796-19312815 None:intergenic 40.0%
AAGCTAGATGAAAATTCGGC+TGG + chr7_2:19312797-19312816 None:intergenic 40.0%
ATAGGAAGGTCACAGCCATT+TGG + chr7_2:19308044-19308063 None:intergenic 45.0%
! GCTTTTGTTGGAGACTCAGT+CGG - chr7_2:19308110-19308129 Msa1051730:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr7_2:19308418-19308437 Msa1051730:CDS 45.0%
TTGCCATCTTCCTAATGGCA+TGG - chr7_2:19309517-19309536 Msa1051730:intron 45.0%
CAACCATGCCATTAGGAAGA+TGG + chr7_2:19309523-19309542 None:intergenic 45.0%
CATCTTCCTAATGGCATGGT+TGG - chr7_2:19309521-19309540 Msa1051730:intron 45.0%
!! TGTGATGGGCACACTTATCA+GGG + chr7_2:19309665-19309684 None:intergenic 45.0%
!! ATGTGATGGGCACACTTATC+AGG + chr7_2:19309666-19309685 None:intergenic 45.0%
GAATCCTAGATGAGACGTGA+GGG - chr7_2:19310718-19310737 Msa1051730:intron 45.0%
AATCCTAGATGAGACGTGAG+GGG - chr7_2:19310719-19310738 Msa1051730:intron 45.0%
! AGGTGCTACAGTACCTAGAT+TGG - chr7_2:19311032-19311051 Msa1051730:intron 45.0%
! GGTGCTACAGTACCTAGATT+GGG - chr7_2:19311033-19311052 Msa1051730:intron 45.0%
! GCTCTCCTTTTTCCCAATCT+AGG + chr7_2:19311048-19311067 None:intergenic 45.0%
TGCGAGTGTGATACAACTAC+GGG + chr7_2:19311826-19311845 None:intergenic 45.0%
! CAAATGGGGTGTCCAAAAAG+AGG + chr7_2:19311899-19311918 None:intergenic 45.0%
! CTCTTTTTGGACACCCCATT+TGG - chr7_2:19311897-19311916 Msa1051730:intron 45.0%
CAACAATGTTGAGGCCAGAT+GGG - chr7_2:19312427-19312446 Msa1051730:CDS 45.0%
! TATTTACTAGGGTGCCCATC+TGG + chr7_2:19312444-19312463 None:intergenic 45.0%
GATGGGCACCCTAGTAAATA+TGG - chr7_2:19312444-19312463 Msa1051730:CDS 45.0%
TCTCCACTGAAGAATCTGTG+GGG - chr7_2:19312746-19312765 Msa1051730:five_prime_UTR 45.0%
AAGAATCTGTGGGGCATACA+TGG - chr7_2:19312755-19312774 Msa1051730:five_prime_UTR 45.0%
!! AATAATTTAAAAATACAAAA+AGG - chr7_2:19308582-19308601 Msa1051730:intron 5.0%
!! ATAATTTAAAAATACAAAAA+GGG - chr7_2:19308583-19308602 Msa1051730:intron 5.0%
!!! AGTAATAAATATATTTTTTT+AGG - chr7_2:19309896-19309915 Msa1051730:intron 5.0%
!!! GTAATAAATATATTTTTTTA+GGG - chr7_2:19309897-19309916 Msa1051730:intron 5.0%
!!! ATTAAATTTCTTATATTTTT+TGG + chr7_2:19310605-19310624 None:intergenic 5.0%
!!! TAAACTATAATTTTTTAATT+AGG - chr7_2:19311258-19311277 Msa1051730:intron 5.0%
!!! AAACTATAATTTTTTAATTA+GGG - chr7_2:19311259-19311278 Msa1051730:intron 5.0%
GCATAGGGGATGAAGACTTG+TGG + chr7_2:19307614-19307633 None:intergenic 50.0%
CCAACTGAGCTAAGCTCATG+AGG + chr7_2:19308416-19308435 None:intergenic 50.0%
CCTCATGAGCTTAGCTCAGT+TGG - chr7_2:19308413-19308432 Msa1051730:CDS 50.0%
GGTGAACCAACCATGCCATT+AGG + chr7_2:19309530-19309549 None:intergenic 50.0%
AGATAAGGACGTGGAGGACA+GGG + chr7_2:19309702-19309721 None:intergenic 50.0%
TAGATAAGGACGTGGAGGAC+AGG + chr7_2:19309703-19309722 None:intergenic 50.0%
TCACGTGGTAGATAAGGACG+TGG + chr7_2:19309711-19309730 None:intergenic 50.0%
GGAATCCTAGATGAGACGTG+AGG - chr7_2:19310717-19310736 Msa1051730:intron 50.0%
TCGAAGAGTCCAGTTGAACC+TGG + chr7_2:19311952-19311971 None:intergenic 50.0%
GCAACAATGTTGAGGCCAGA+TGG - chr7_2:19312426-19312445 Msa1051730:CDS 50.0%
TGCCTGGACCTATTGACACA+TGG - chr7_2:19312520-19312539 Msa1051730:CDS 50.0%
CTCCATGTGTCAATAGGTCC+AGG + chr7_2:19312525-19312544 None:intergenic 50.0%
GGAGATTACTTACGGCTGGA+CGG + chr7_2:19312731-19312750 None:intergenic 50.0%
CAGTGGAGATTACTTACGGC+TGG + chr7_2:19312735-19312754 None:intergenic 50.0%
ATGCCCCACAGATTCTTCAG+TGG + chr7_2:19312752-19312771 None:intergenic 50.0%
!! GGTCTCTGGGATTCGAATCC+CGG - chr7_2:19308461-19308480 Msa1051730:CDS 55.0%
CGTGGTAGATAAGGACGTGG+AGG + chr7_2:19309708-19309727 None:intergenic 55.0%
! TGTGTGCATTGGTGCTTGCC+TGG - chr7_2:19312504-19312523 Msa1051730:CDS 55.0%
GGTCCCCTCACGTCTCATCT+AGG + chr7_2:19310725-19310744 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 19307404 19312907 19307404 ID=Msa1051730;Name=Msa1051730
chr7_2 mRNA 19307404 19312907 19307404 ID=Msa1051730-mRNA-1;Parent=Msa1051730;Name=Msa1051730-mRNA-1;_AED=0.17;_eAED=0.17;_QI=262|1|1|1|1|1|2|284|438
chr7_2 exon 19307404 19308497 19307404 ID=Msa1051730-mRNA-1:exon:4245;Parent=Msa1051730-mRNA-1
chr7_2 exon 19312139 19312907 19312139 ID=Msa1051730-mRNA-1:exon:4244;Parent=Msa1051730-mRNA-1
chr7_2 five_prime_UTR 19312646 19312907 19312646 ID=Msa1051730-mRNA-1:five_prime_utr;Parent=Msa1051730-mRNA-1
chr7_2 CDS 19312139 19312645 19312139 ID=Msa1051730-mRNA-1:cds;Parent=Msa1051730-mRNA-1
chr7_2 CDS 19307688 19308497 19307688 ID=Msa1051730-mRNA-1:cds;Parent=Msa1051730-mRNA-1
chr7_2 three_prime_UTR 19307404 19307687 19307404 ID=Msa1051730-mRNA-1:three_prime_utr;Parent=Msa1051730-mRNA-1
Gene Sequence

>Msa1051730

ATGAAGTTCCAAGCTATGGAACTTCTCTTTGGTAAAAACACACCAAAACAAATGATTCCAAAAGTAACATTACTAGCAATTTTTGCAATACTTGTCTTCACTGTCACACCACTATCCTACCCTTTATTTAGAAATCCTTCATCCTTGAAAAACATTAAAAAAACCAATCAACCATCCACTGCATTTGATGATTTAAATGAATCAGCAAGTTTGCCTTCAACTTCTATAAAAAGGTGTGACATTTTTACTGGTGAGTGGGTTCCAAATCCAAAAGCACCATATTACACAAACAAAACATGTTGGGCAATACATGAACACCAAAATTGTATGAAGTATGGAAGACCAGATTCTGATTACTTGAAATGGAAATGGAAACCAAATGGCTGTGACCTTCCTATATTCAATCCTTTTCAGTTTCTTGAAATTGTGAGGGGAAAATCTATGGCTTTTGTTGGAGACTCAGTCGGTAGAAATCAGATGCAGTCCATGATTTGCCTACTATCAAGGGTGGAATGGCCCGTAGTTGTATCACACTCGCAAAATGATTATTTCATGACGTGGCACTACCCAACCTACAATTTCACAATGGCCTCTTTTTGGACACCCCATTTGGTAAGATCAAAAGAATCAGATTTAAAAGGTCCAGGTTCAACTGGACTCTTCGATCTTTACATTGATGAGCCAGATGAAAAATGGATAACTCAAATTGAAGATTTCGATTATGTTATTCTCAATGGAGGACATTGGTTTACAAGATCAATGGTATTCTACGAGAAACAAAAAATTGTTGGATGTCATTATTGTCTCTTAGAAAATGTCCCTGATTTAACCATGTACCATGGTTATAGAAGAGCATTTAGGACTGCATTTAAAGCCATAAATAATTTAAGGAATTTTAAGGGCATAACATTTCTTAGGACATTTTCACCATCACATTTTGAAAATGGGTTATGGAATCAAGGTGGGAATTGTGTTAGAACTAAGCCATTTAGAAGCAATGAAACACAATTAGAGGGATTTAATTTAGAGTTTTATATGATTCAATTGGAGGAGTTCAAAATTGCTGAAAAGGAAGCAAGAAAAAAGGGTTTGAAATTTAGGTTATATGATACAACACAAGCAACAATGTTGAGGCCAGATGGGCACCCTAGTAAATATGGACATTGGCCTAATGAGAATGTGACATTGTATAATGATTGTGTGCATTGGTGCTTGCCTGGACCTATTGACACATGGAGTGATTTCTTGTTAGATATGTTGAAGATGGAGGGTGTGAGATCAGCAGAAGAAAGAAGACTTCATTTGCACACAAATTGA
Protein sequence

>Msa1051730

MKFQAMELLFGKNTPKQMIPKVTLLAIFAILVFTVTPLSYPLFRNPSSLKNIKKTNQPSTAFDDLNESASLPSTSIKRCDIFTGEWVPNPKAPYYTNKTCWAIHEHQNCMKYGRPDSDYLKWKWKPNGCDLPIFNPFQFLEIVRGKSMAFVGDSVGRNQMQSMICLLSRVEWPVVVSHSQNDYFMTWHYPTYNFTMASFWTPHLVRSKESDLKGPGSTGLFDLYIDEPDEKWITQIEDFDYVILNGGHWFTRSMVFYEKQKIVGCHYCLLENVPDLTMYHGYRRAFRTAFKAINNLRNFKGITFLRTFSPSHFENGLWNQGGNCVRTKPFRSNETQLEGFNLEFYMIQLEEFKIAEKEARKKGLKFRLYDTTQATMLRPDGHPSKYGHWPNENVTLYNDCVHWCLPGPIDTWSDFLLDMLKMEGVRSAEERRLHLHTN*