Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0432930 | XP_003603440.1 | 98.307 | 709 | 11 | 1 | 1 | 709 | 1 | 708 | 0.0 | 1436 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0432930 | sp|O78328|DXS_CAPAN | 61.985 | 655 | 243 | 4 | 58 | 707 | 65 | 718 | 0.0 | 811 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0432930 | G7JBM5 | 98.307 | 709 | 11 | 1 | 1 | 709 | 1 | 708 | 0.0 | 1436 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011250 | Msa0432930 | 0.800584 | 1.346049e-48 | -8.615850e-47 |
Msa0030180 | Msa0432930 | 0.809204 | 2.124372e-50 | -8.615850e-47 |
Msa0031360 | Msa0432930 | 0.817697 | 2.882251e-52 | -8.615850e-47 |
Msa0076670 | Msa0432930 | 0.808626 | 2.824360e-50 | -8.615850e-47 |
Msa0079400 | Msa0432930 | 0.811775 | 5.912859e-51 | -8.615850e-47 |
Msa0105070 | Msa0432930 | 0.812899 | 3.360541e-51 | -8.615850e-47 |
Msa0116770 | Msa0432930 | 0.802261 | 6.099912e-49 | -8.615850e-47 |
Msa0165210 | Msa0432930 | 0.805159 | 1.526808e-49 | -8.615850e-47 |
Msa0171300 | Msa0432930 | 0.828759 | 7.518878e-55 | -8.615850e-47 |
Msa0193890 | Msa0432930 | 0.817867 | 2.638505e-52 | -8.615850e-47 |
Msa0226890 | Msa0432930 | 0.804066 | 2.581569e-49 | -8.615850e-47 |
Msa0237310 | Msa0432930 | 0.801384 | 9.237799e-49 | -8.615850e-47 |
Msa0382870 | Msa0432930 | 0.987771 | 1.783750e-171 | -8.615850e-47 |
Msa0387250 | Msa0432930 | 0.802205 | 6.264814e-49 | -8.615850e-47 |
Msa0388960 | Msa0432930 | 0.815807 | 7.650865e-52 | -8.615850e-47 |
Msa0422500 | Msa0432930 | 0.818264 | 2.146164e-52 | -8.615850e-47 |
Msa0432930 | Msa0439970 | 0.806090 | 9.737368e-50 | -8.615850e-47 |
Msa0432930 | Msa0450350 | 0.822015 | 2.969705e-53 | -8.615850e-47 |
Msa0432930 | Msa0477020 | 0.983331 | 1.877004e-157 | -8.615850e-47 |
Msa0432930 | Msa0484780 | 0.808238 | 3.415922e-50 | -8.615850e-47 |
Msa0432930 | Msa0511250 | 0.809549 | 1.791401e-50 | -8.615850e-47 |
Msa0432930 | Msa0523940 | 0.804284 | 2.325583e-49 | -8.615850e-47 |
Msa0432930 | Msa0535320 | 0.805289 | 1.434695e-49 | -8.615850e-47 |
Msa0432930 | Msa0626280 | 0.832146 | 1.116544e-55 | -8.615850e-47 |
Msa0432930 | Msa0663250 | 0.806090 | 9.737368e-50 | -8.615850e-47 |
Msa0432930 | Msa0664570 | 0.814386 | 1.581693e-51 | -8.615850e-47 |
Msa0432930 | Msa0689760 | 0.805458 | 1.322064e-49 | -8.615850e-47 |
Msa0432930 | Msa0702350 | 0.800168 | 1.635433e-48 | -8.615850e-47 |
Msa0432930 | Msa0740640 | 0.803930 | 2.755236e-49 | -8.615850e-47 |
Msa0432930 | Msa0760130 | 0.801520 | 8.661244e-49 | -8.615850e-47 |
Msa0432930 | Msa0828660 | 0.836988 | 6.773566e-57 | -8.615850e-47 |
Msa0432930 | Msa0832090 | 0.803530 | 3.335707e-49 | -8.615850e-47 |
Msa0432930 | Msa0908050 | 0.810077 | 1.379078e-50 | -8.615850e-47 |
Msa0432930 | Msa1000880 | 0.802213 | 6.240581e-49 | -8.615850e-47 |
Msa0432930 | Msa1000940 | 0.801359 | 9.344513e-49 | -8.615850e-47 |
Msa0432930 | Msa1028270 | 0.813964 | 1.960138e-51 | -8.615850e-47 |
Msa0432930 | Msa1030970 | 0.809651 | 1.702678e-50 | -8.615850e-47 |
Msa0432930 | Msa1046300 | 0.801174 | 1.019625e-48 | -8.615850e-47 |
Msa0432930 | Msa1082500 | 0.806525 | 7.884330e-50 | -8.615850e-47 |
Msa0432930 | Msa1097060 | 0.800500 | 1.400218e-48 | -8.615850e-47 |
Msa0432930 | Msa1152950 | 0.807070 | 6.048416e-50 | -8.615850e-47 |
Msa0432930 | Msa1165520 | 0.830374 | 3.044598e-55 | -8.615850e-47 |
Msa0432930 | Msa1179940 | 0.825925 | 3.592153e-54 | -8.615850e-47 |
Msa0432930 | Msa1179970 | 0.830197 | 3.362236e-55 | -8.615850e-47 |
Msa0432930 | Msa1224830 | 0.811194 | 7.910577e-51 | -8.615850e-47 |
Msa0432930 | Msa1229600 | 0.833221 | 6.038694e-56 | -8.615850e-47 |
Msa0432930 | Msa1239530 | 0.807622 | 4.620561e-50 | -8.615850e-47 |
Msa0432930 | Msa1262750 | 0.819112 | 1.378137e-52 | -8.615850e-47 |
Msa0432930 | Msa1282500 | 0.829111 | 6.181058e-55 | -8.615850e-47 |
Msa0432930 | Msa1310210 | 0.818968 | 1.485761e-52 | -8.615850e-47 |
Msa0432930 | Msa1313150 | 0.813794 | 2.137183e-51 | -8.615850e-47 |
Msa0432930 | Msa1332000 | 0.820371 | 7.105301e-53 | -8.615850e-47 |
Msa0432930 | Msa1333730 | 0.810393 | 1.178997e-50 | -8.615850e-47 |
Msa0432930 | Msa1348360 | 0.804453 | 2.144703e-49 | -8.615850e-47 |
Msa0432930 | Msa1371310 | 0.981036 | 1.270696e-151 | -8.615850e-47 |
Msa0432930 | Msa1393410 | 0.832696 | 8.156823e-56 | -8.615850e-47 |
Msa0432930 | Msa1420250 | 0.800748 | 1.246231e-48 | -8.615850e-47 |
Msa0432930 | Msa1423880 | 0.813621 | 2.333593e-51 | -8.615850e-47 |
Msa0432930 | Msa1424680 | 0.807056 | 6.090783e-50 | -8.615850e-47 |
Msa0432930 | Msa1435420 | 0.832644 | 8.405868e-56 | -8.615850e-47 |
Msa0432930 | Msa1466590 | 0.801614 | 8.285722e-49 | -8.615850e-47 |
Msa0274730 | Msa0432930 | 0.802991 | 4.314224e-49 | -8.615850e-47 |
Msa0317510 | Msa0432930 | 0.804227 | 2.390349e-49 | -8.615850e-47 |
Msa0344590 | Msa0432930 | 0.811927 | 5.481402e-51 | -8.615850e-47 |
Msa0350870 | Msa0432930 | 0.801911 | 7.199826e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0432930 | MtrunA17_Chr3g0138171 | 98.307 | 709 | 11 | 1 | 1 | 709 | 1 | 708 | 0.0 | 1436 |
Msa0432930 | MtrunA17_Chr4g0066611 | 61.457 | 659 | 246 | 4 | 55 | 707 | 60 | 716 | 0.0 | 820 |
Msa0432930 | MtrunA17_Chr2g0286641 | 57.589 | 672 | 274 | 6 | 44 | 709 | 50 | 716 | 0.0 | 776 |
Msa0432930 | MtrunA17_Chr8g0367201 | 56.555 | 656 | 275 | 5 | 58 | 706 | 58 | 710 | 0.0 | 753 |
Msa0432930 | MtrunA17_Chr8g0367181 | 56.707 | 656 | 274 | 5 | 58 | 706 | 58 | 710 | 0.0 | 752 |
Msa0432930 | MtrunA17_Chr7g0214101 | 27.468 | 233 | 142 | 8 | 422 | 635 | 66 | 290 | 1.68e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0432930 | AT5G11380.1 | 68.398 | 693 | 192 | 5 | 19 | 707 | 30 | 699 | 0.0 | 959 |
Msa0432930 | AT4G15560.1 | 59.639 | 664 | 257 | 5 | 49 | 704 | 56 | 716 | 0.0 | 797 |
Msa0432930 | AT3G21500.3 | 55.224 | 670 | 260 | 5 | 41 | 704 | 39 | 674 | 0.0 | 733 |
Msa0432930 | AT5G11380.3 | 64.632 | 557 | 170 | 5 | 19 | 571 | 30 | 563 | 0.0 | 723 |
Msa0432930 | AT5G11380.2 | 65.209 | 549 | 164 | 5 | 19 | 563 | 30 | 555 | 0.0 | 720 |
Msa0432930 | AT5G11380.4 | 65.844 | 527 | 153 | 5 | 19 | 541 | 30 | 533 | 0.0 | 692 |
Msa0432930 | AT3G21500.1 | 54.167 | 624 | 247 | 5 | 41 | 659 | 39 | 628 | 0.0 | 667 |
Msa0432930 | AT3G21500.2 | 54.080 | 625 | 247 | 5 | 41 | 659 | 39 | 629 | 0.0 | 667 |
Msa0432930 | AT5G50850.1 | 29.130 | 230 | 142 | 8 | 422 | 635 | 74 | 298 | 5.76e-14 | 74.7 |
Find 193 sgRNAs with CRISPR-Local
Find 607 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATGCTTCGTGTCCTTTC+CGG | 0.206226 | 3_2:+85256463 | Msa0432930:three_prime_UTR |
AAACTTTCGGAAAGATTTAC+TGG | 0.231822 | 3_2:-85250280 | None:intergenic |
TGATTCTGGAAAGGGGAAAT+TGG | 0.233981 | 3_2:-85249229 | None:intergenic |
AGAATGCAAAAGGCTTTATT+AGG | 0.238114 | 3_2:+85256505 | Msa0432930:three_prime_UTR |
GCCGTCACTTAAACTGTTTA+TGG | 0.240402 | 3_2:+85254316 | Msa0432930:CDS |
TCTTCAAGAAGTAGCTTCTT+TGG | 0.252475 | 3_2:+85253047 | Msa0432930:CDS |
TGCCACAGCATTGAGTTTGC+TGG | 0.261355 | 3_2:+85256393 | Msa0432930:CDS |
CACGCTGTCACATTTGCTTC+TGG | 0.266276 | 3_2:+85254383 | Msa0432930:CDS |
GAAAGAACATTTCCATCGTT+TGG | 0.276127 | 3_2:-85248945 | None:intergenic |
CATTCACTTCTTGCAAATCT+TGG | 0.276684 | 3_2:+85255920 | Msa0432930:CDS |
AGGTTACTTGGACTCAAATT+TGG | 0.278392 | 3_2:+85250155 | Msa0432930:CDS |
AGAAGAATACAAGGTGATTC+TGG | 0.295885 | 3_2:-85249243 | None:intergenic |
GCTCAATTTATTGCTCTTGA+TGG | 0.301990 | 3_2:+85256076 | Msa0432930:CDS |
GGTAAAGATGTTGCCTTATT+GGG | 0.306782 | 3_2:+85255863 | Msa0432930:CDS |
GAAGGGTCTATTGGAGGATT+TGG | 0.309133 | 3_2:+85256043 | Msa0432930:CDS |
GGTGCCATGACAATCATATT+TGG | 0.314187 | 3_2:-85255500 | None:intergenic |
GTCATAGGCTCTCTGTAAAA+AGG | 0.315685 | 3_2:-85254450 | None:intergenic |
TCTCTCTAGCTTCACTCCTT+TGG | 0.320738 | 3_2:+85248966 | Msa0432930:five_prime_UTR |
GTCTTTGTCTTTCTCAGCTT+CGG | 0.321151 | 3_2:-85254261 | None:intergenic |
TAGCAGCTTCTCTAAACTTT+CGG | 0.328548 | 3_2:-85250293 | None:intergenic |
AGGTAAAGATGTTGCCTTAT+TGG | 0.329622 | 3_2:+85255862 | Msa0432930:CDS |
AGCAATCCAATCTGCGAGTT+AGG | 0.330179 | 3_2:-85249199 | None:intergenic |
ACTTCTCGACCGAAGAATTA+AGG | 0.337143 | 3_2:+85256099 | Msa0432930:CDS |
ATACTAACATAGGTATAATA+TGG | 0.338315 | 3_2:+85256742 | Msa0432930:three_prime_UTR |
CTACTCTATTTGAAGAGCTT+GGG | 0.339586 | 3_2:+85252971 | Msa0432930:CDS |
AATATTACTGAATCCTAGTA+TGG | 0.348105 | 3_2:+85249457 | Msa0432930:CDS |
CGTTGGTCAATTACCTCAAT+TGG | 0.351062 | 3_2:-85255647 | None:intergenic |
CCAATCTGCGAGTTAGGGTT+TGG | 0.351819 | 3_2:-85249193 | None:intergenic |
TGTTATAACTGATGAAAATC+AGG | 0.353490 | 3_2:+85253095 | Msa0432930:CDS |
GGATTCAATGGGTCCTGTCT+TGG | 0.353501 | 3_2:+85253068 | Msa0432930:CDS |
AGATGCTTCGTGTCCTTTCC+GGG | 0.354269 | 3_2:+85256464 | Msa0432930:three_prime_UTR |
TATCCTAGGGGTGCCTTGGT+TGG | 0.359144 | 3_2:+85255596 | Msa0432930:CDS |
CAGTTTGCTTTCGGTATCCT+AGG | 0.359222 | 3_2:+85255582 | Msa0432930:CDS |
CATTGATCCATATCCCAATA+AGG | 0.366694 | 3_2:-85255876 | None:intergenic |
GCAGTTGCAAGGGATATTAA+AGG | 0.367112 | 3_2:+85250054 | Msa0432930:CDS |
TATGCACATAAGATACTTAC+AGG | 0.367465 | 3_2:+85249692 | Msa0432930:CDS |
GATGTTGCCTTATTGGGATA+TGG | 0.373978 | 3_2:+85255869 | Msa0432930:CDS |
ACAGAAAATTGCAAGTGTTA+AGG | 0.376757 | 3_2:+85256834 | Msa0432930:three_prime_UTR |
AGTAGCTTCTTTGGATTCAA+TGG | 0.378602 | 3_2:+85253056 | Msa0432930:CDS |
CACAATTCACAAACACATAA+AGG | 0.378697 | 3_2:-85256437 | None:intergenic |
TCGATATTGTGTCCATCCAC+TGG | 0.382005 | 3_2:-85253009 | None:intergenic |
AACTAATTACCTTAATTCTT+CGG | 0.383912 | 3_2:-85256108 | None:intergenic |
ACCGTTGAGGAAGGGTCTAT+TGG | 0.384406 | 3_2:+85256034 | Msa0432930:CDS |
ATGATCAACCAGTTTGCTTT+CGG | 0.387179 | 3_2:+85255573 | Msa0432930:CDS |
GAAGAAGGTATAATGCAAAA+TGG | 0.389504 | 3_2:-85254428 | None:intergenic |
TTTGAAGATTTGAGTAATGA+TGG | 0.391316 | 3_2:+85249127 | Msa0432930:exon |
GCTTGGTTAAGCTGTTGATT+TGG | 0.391371 | 3_2:-85256346 | None:intergenic |
CTTGAAGAACCTTTCTCAGC+AGG | 0.397023 | 3_2:+85249373 | Msa0432930:CDS |
GATTCTGGAAAGGGGAAATT+GGG | 0.398441 | 3_2:-85249228 | None:intergenic |
ACTTTCGTTAACACTGTGTT+TGG | 0.402572 | 3_2:-85249001 | None:intergenic |
ATCCTAGGGGTGCCTTGGTT+GGG | 0.404456 | 3_2:+85255597 | Msa0432930:CDS |
TCTACTCTATTTGAAGAGCT+TGG | 0.406045 | 3_2:+85252970 | Msa0432930:CDS |
TTAGTTCTGATTTGCATGTC+TGG | 0.406158 | 3_2:+85256559 | Msa0432930:three_prime_UTR |
CCAAACCCTAACTCGCAGAT+TGG | 0.406186 | 3_2:+85249193 | Msa0432930:CDS |
CGAGTGATCAAAACAGATTA+TGG | 0.410982 | 3_2:+85249035 | Msa0432930:five_prime_UTR |
CTGATATTGATGATTTCTAC+TGG | 0.411312 | 3_2:+85249303 | Msa0432930:CDS |
TCCCACAATATCTTGTCAAC+TGG | 0.413014 | 3_2:-85249524 | None:intergenic |
ATAAGTATGAACCTGGTCAT+AGG | 0.419660 | 3_2:-85254465 | None:intergenic |
GACATTGTGGTTGTTCATGC+AGG | 0.429229 | 3_2:+85254281 | Msa0432930:CDS |
TGATTGCTTTGTGGAGAGTT+TGG | 0.431702 | 3_2:+85254235 | Msa0432930:CDS |
GTTTCAACTCCTGCTGAGAA+AGG | 0.438184 | 3_2:-85249382 | None:intergenic |
GAGAGTGAATACGATGCATT+TGG | 0.440095 | 3_2:+85249779 | Msa0432930:CDS |
AATGAGCAATGCAGGTTACT+TGG | 0.443326 | 3_2:+85250143 | Msa0432930:CDS |
TAACTGTCTGGTAAAACAAT+TGG | 0.443341 | 3_2:-85256307 | None:intergenic |
CTTATTGGGATATGGATCAA+TGG | 0.444909 | 3_2:+85255877 | Msa0432930:CDS |
CTTAACCAAGCAGGGTTGAC+TGG | 0.445093 | 3_2:+85256358 | Msa0432930:CDS |
TCGGTATCCTAGGGGTGCCT+TGG | 0.446965 | 3_2:+85255592 | Msa0432930:CDS |
ATACAAGGTGATTCTGGAAA+GGG | 0.448453 | 3_2:-85249237 | None:intergenic |
CAATCTGCGAGTTAGGGTTT+GGG | 0.451051 | 3_2:-85249192 | None:intergenic |
TACTGGATTGGAGCCTGCTA+AGG | 0.451075 | 3_2:-85250263 | None:intergenic |
GAATGGAAAGGGATCACAAA+TGG | 0.451871 | 3_2:-85249170 | None:intergenic |
AGGTCCACCACAGCCATACT+AGG | 0.452040 | 3_2:-85249470 | None:intergenic |
CAGTAGAAATCATCAATATC+AGG | 0.455874 | 3_2:-85249302 | None:intergenic |
AAAAGAGTGTCAAATAGAAA+GGG | 0.457000 | 3_2:+85256620 | Msa0432930:three_prime_UTR |
TTCGGAAAGATTTACTGGAT+TGG | 0.457275 | 3_2:-85250275 | None:intergenic |
GAAAAGAGTGTCAAATAGAA+AGG | 0.459905 | 3_2:+85256619 | Msa0432930:three_prime_UTR |
TCTTGCAAATCTTGGCATTG+AGG | 0.460171 | 3_2:+85255928 | Msa0432930:CDS |
GCATTCTCAATTTACGAGAC+TGG | 0.461722 | 3_2:-85256703 | None:intergenic |
TAGTTGCAGTTATCAGCAAT+TGG | 0.468844 | 3_2:+85250091 | Msa0432930:CDS |
GTAGCTTCTTTGGATTCAAT+GGG | 0.476127 | 3_2:+85253057 | Msa0432930:CDS |
GCAATCCAATCTGCGAGTTA+GGG | 0.477857 | 3_2:-85249198 | None:intergenic |
AAATAGAAGACAACTCTAAA+CGG | 0.479369 | 3_2:-85249421 | None:intergenic |
GCTGGTCGGCTTCAAACATA+TGG | 0.480453 | 3_2:+85254212 | Msa0432930:CDS |
GCCACAGCATTGAGTTTGCT+GGG | 0.483694 | 3_2:+85256394 | Msa0432930:CDS |
CTAGGATACCGAAAGCAAAC+TGG | 0.484097 | 3_2:-85255581 | None:intergenic |
TTAGGGTTTGGGAATGGAAA+GGG | 0.485075 | 3_2:-85249181 | None:intergenic |
AAGGGAAGAATTCTTGTTGA+AGG | 0.485127 | 3_2:+85255842 | Msa0432930:CDS |
AGTTTGCTTTCGGTATCCTA+GGG | 0.492401 | 3_2:+85255583 | Msa0432930:CDS |
TCTGATTTGTTAGACAATGC+TGG | 0.494059 | 3_2:+85254194 | Msa0432930:CDS |
TGTCATTACAAGTGCAGGAT+TGG | 0.494629 | 3_2:+85255418 | Msa0432930:CDS |
AGCAATTGGACAACTATGTC+TGG | 0.495383 | 3_2:+85250105 | Msa0432930:CDS |
GCCTCAGAAGCTCGATGTCA+AGG | 0.495419 | 3_2:-85255982 | None:intergenic |
AACATATGGTGATTGCTTTG+TGG | 0.497898 | 3_2:+85254226 | Msa0432930:CDS |
AGGATAGAGCTTCACGAGTA+CGG | 0.499924 | 3_2:-85256417 | None:intergenic |
CAGTTGCAAGGGATATTAAA+GGG | 0.501421 | 3_2:+85250055 | Msa0432930:CDS |
TGAATATGCTCGTGGTATGA+TGG | 0.502051 | 3_2:+85252936 | Msa0432930:CDS |
GGTCAATTTGTCGTCTCATA+CGG | 0.503022 | 3_2:+85249056 | Msa0432930:five_prime_UTR |
CAACGGTAATTAGAAAAGAA+TGG | 0.504355 | 3_2:-85256018 | None:intergenic |
AAGAGAACCAAGAATGCAAA+AGG | 0.509689 | 3_2:+85256495 | Msa0432930:three_prime_UTR |
TTGAAGATTTGAGTAATGAT+GGG | 0.518387 | 3_2:+85249128 | Msa0432930:exon |
ATTCATACACAGATTGGAAA+GGG | 0.519161 | 3_2:+85255824 | Msa0432930:intron |
GGATGCAACAGTATATCTGC+TGG | 0.522802 | 3_2:+85249812 | Msa0432930:CDS |
TTCAGGAATGGCAGTTGCAA+GGG | 0.523513 | 3_2:+85250044 | Msa0432930:intron |
TTACTTGGACTCAAATTTGG+TGG | 0.523809 | 3_2:+85250158 | Msa0432930:CDS |
TGCGAGTTAGGGTTTGGGAA+TGG | 0.525876 | 3_2:-85249187 | None:intergenic |
TTTCTAATTACCGTTGAGGA+AGG | 0.526295 | 3_2:+85256025 | Msa0432930:CDS |
CTCTATCTAGTACCCTTAGC+AGG | 0.526339 | 3_2:+85250250 | Msa0432930:CDS |
TTGGACAACTATGTCTGGCC+AGG | 0.526907 | 3_2:+85250110 | Msa0432930:CDS |
AATGGAAAGGGATCACAAAT+GGG | 0.527413 | 3_2:-85249169 | None:intergenic |
CGATATTGTGTCCATCCACT+GGG | 0.527659 | 3_2:-85253008 | None:intergenic |
CGTGGTATGATGGGTCCACC+AGG | 0.528974 | 3_2:+85252946 | Msa0432930:CDS |
GATGCATTTGGTGCAGGTCA+TGG | 0.529726 | 3_2:+85249791 | Msa0432930:CDS |
CTCCAGTTGACAAGATATTG+TGG | 0.529849 | 3_2:+85249522 | Msa0432930:CDS |
TGGTTCTCTTATGCACATCC+CGG | 0.530981 | 3_2:-85256482 | None:intergenic |
ATTACAAGTGCAGGATTGGT+AGG | 0.531830 | 3_2:+85255422 | Msa0432930:CDS |
AAAGGTTCTTCAAGCAAAGA+GGG | 0.533111 | 3_2:-85249364 | None:intergenic |
AATCAACAGCTTAACCAAGC+AGG | 0.533615 | 3_2:+85256349 | Msa0432930:CDS |
CCTCAGAAGCTCGATGTCAA+GGG | 0.536808 | 3_2:-85255981 | None:intergenic |
TTTCAGGAATGGCAGTTGCA+AGG | 0.538184 | 3_2:+85250043 | Msa0432930:intron |
TATGAGGCAATGAGCAATGC+AGG | 0.539433 | 3_2:+85250135 | Msa0432930:CDS |
GTTATAACATGAACCAAGAC+AGG | 0.540223 | 3_2:-85253081 | None:intergenic |
GCATGTTCAATATAACTGTC+TGG | 0.540461 | 3_2:-85256319 | None:intergenic |
TCTAGAAGAAGAAGAATACA+AGG | 0.540511 | 3_2:-85249252 | None:intergenic |
CAGGGTGTTACAAAACGTAT+TGG | 0.541232 | 3_2:+85252880 | Msa0432930:intron |
TGCTCATTGCCTCATAGACC+TGG | 0.542521 | 3_2:-85250128 | None:intergenic |
CCCTTGACATCGAGCTTCTG+AGG | 0.543920 | 3_2:+85255981 | Msa0432930:CDS |
AACAGTATATCTGCTGGACT+TGG | 0.544844 | 3_2:+85249818 | Msa0432930:CDS |
AATGGTTCAGAACTGTCTAA+AGG | 0.546738 | 3_2:+85255895 | Msa0432930:CDS |
GTTGAGGAAGGGTCTATTGG+AGG | 0.546973 | 3_2:+85256037 | Msa0432930:CDS |
ATCAAATGCTCCACACTGGA+GGG | 0.547141 | 3_2:-85255456 | None:intergenic |
CAAATGCACGCTAAATCACT+TGG | 0.547266 | 3_2:-85256883 | None:intergenic |
GAATACGATGCATTTGGTGC+AGG | 0.548872 | 3_2:+85249785 | Msa0432930:CDS |
TTGAACATTGTTCCAAACGA+TGG | 0.549914 | 3_2:+85248933 | None:intergenic |
GAGCAATAAATTGAGCAACA+TGG | 0.551323 | 3_2:-85256069 | None:intergenic |
AGCAATAAATTGAGCAACAT+GGG | 0.552047 | 3_2:-85256068 | None:intergenic |
TCCATAAACAGTTTAAGTGA+CGG | 0.557677 | 3_2:-85254317 | None:intergenic |
AAAGTTTAGAGAAGCTGCTA+AGG | 0.557892 | 3_2:+85250296 | Msa0432930:CDS |
GCTTCTGGTTTATCATGTGG+TGG | 0.559580 | 3_2:+85254398 | Msa0432930:CDS |
TATTCATACACAGATTGGAA+AGG | 0.566531 | 3_2:+85255823 | Msa0432930:intron |
GCAGGATTGGTAGGTTCAGA+TGG | 0.569526 | 3_2:+85255431 | Msa0432930:CDS |
GAGCTTGGGTTGTATTACAT+AGG | 0.570421 | 3_2:+85252985 | Msa0432930:CDS |
GAATATGCTCGTGGTATGAT+GGG | 0.571731 | 3_2:+85252937 | Msa0432930:CDS |
TTCTAATTACCGTTGAGGAA+GGG | 0.573324 | 3_2:+85256026 | Msa0432930:CDS |
ATCAACAGCTTAACCAAGCA+GGG | 0.577584 | 3_2:+85256350 | Msa0432930:CDS |
ATACATAACTGACAAGCAGC+AGG | 0.578705 | 3_2:+85253140 | Msa0432930:CDS |
TGATATTGATGATTTCTACT+GGG | 0.582897 | 3_2:+85249304 | Msa0432930:CDS |
AATACAAGGTGATTCTGGAA+AGG | 0.583871 | 3_2:-85249238 | None:intergenic |
CTTGTAATGACAAAACGCAC+TGG | 0.585950 | 3_2:-85255407 | None:intergenic |
TCCAATAGACCCTTCCTCAA+CGG | 0.587245 | 3_2:-85256035 | None:intergenic |
TTTGCTTCTGGTTTATCATG+TGG | 0.587877 | 3_2:+85254395 | Msa0432930:CDS |
ACTGGATTGGAGCCTGCTAA+GGG | 0.588415 | 3_2:-85250262 | None:intergenic |
ACATGATGGAATTCCAATTG+AGG | 0.588705 | 3_2:+85255634 | Msa0432930:CDS |
GAAAGGTTCTTCAAGCAAAG+AGG | 0.590345 | 3_2:-85249365 | None:intergenic |
CTCTTATGCACATCCCGGAA+AGG | 0.591436 | 3_2:-85256477 | None:intergenic |
GTTAGGGTTTGGGAATGGAA+AGG | 0.592204 | 3_2:-85249182 | None:intergenic |
AGGTGACTGTTGCTGATGCA+AGG | 0.592702 | 3_2:+85255948 | Msa0432930:CDS |
TATGTCTGGCCAGGTCTATG+AGG | 0.594144 | 3_2:+85250119 | Msa0432930:CDS |
ACAAGTTCAGCCTCATCAGA+TGG | 0.597230 | 3_2:-85255521 | None:intergenic |
AAAGACGAAGCTATACATGA+TGG | 0.597974 | 3_2:+85255620 | Msa0432930:CDS |
ACTGAATCCTAGTATGGCTG+TGG | 0.598944 | 3_2:+85249463 | Msa0432930:CDS |
GAATCCTAGTATGGCTGTGG+TGG | 0.600379 | 3_2:+85249466 | Msa0432930:CDS |
TATTACATAGGCCCAGTGGA+TGG | 0.600676 | 3_2:+85252997 | Msa0432930:CDS |
ATTTGTTAGACAATGCTGGT+CGG | 0.603925 | 3_2:+85254198 | Msa0432930:CDS |
TACAAGGTGATTCTGGAAAG+GGG | 0.607701 | 3_2:-85249236 | None:intergenic |
TATCAAATGCTCCACACTGG+AGG | 0.611958 | 3_2:-85255457 | None:intergenic |
TTCCCAACCAAGGCACCCCT+AGG | 0.612053 | 3_2:-85255599 | None:intergenic |
CTCAGAAGCTCGATGTCAAG+GGG | 0.612883 | 3_2:-85255980 | None:intergenic |
GATGTCCAGTCAACCCTGCT+TGG | 0.614015 | 3_2:-85256363 | None:intergenic |
TCCAGTTGACAAGATATTGT+GGG | 0.614631 | 3_2:+85249523 | Msa0432930:CDS |
TGAGGCTGAACTTGTGCACA+TGG | 0.615311 | 3_2:+85255529 | Msa0432930:CDS |
GTTACAAAACGTATTGGCAG+AGG | 0.616921 | 3_2:+85252886 | Msa0432930:CDS |
TCTTCAAATAGAGTAGAACC+TGG | 0.617072 | 3_2:-85252964 | None:intergenic |
TCAAATGCTCCACACTGGAG+GGG | 0.618009 | 3_2:-85255455 | None:intergenic |
CTTACCAAATATGATTGTCA+TGG | 0.622425 | 3_2:+85255496 | Msa0432930:CDS |
TCAGATGGTCCCCTCCAGTG+TGG | 0.622752 | 3_2:+85255446 | Msa0432930:CDS |
TGAGAAAGACAAAGACATTG+TGG | 0.627386 | 3_2:+85254268 | Msa0432930:CDS |
AGCTTCGTCTTTCCCAACCA+AGG | 0.630651 | 3_2:-85255609 | None:intergenic |
TTTACAGAGAGCCTATGACC+AGG | 0.633765 | 3_2:+85254454 | Msa0432930:CDS |
CACATAAGATACTTACAGGA+CGG | 0.634565 | 3_2:+85249696 | Msa0432930:CDS |
TTATATCAAATGCTCCACAC+TGG | 0.640253 | 3_2:-85255460 | None:intergenic |
GCCCAGCAAACTCAATGCTG+TGG | 0.647181 | 3_2:-85256395 | None:intergenic |
AAAGAGTGTCAAATAGAAAG+GGG | 0.648956 | 3_2:+85256621 | Msa0432930:three_prime_UTR |
GACAAGATATTGTGGGATGT+CGG | 0.651340 | 3_2:+85249530 | Msa0432930:CDS |
GTTTGCTTTCGGTATCCTAG+GGG | 0.655988 | 3_2:+85255584 | Msa0432930:CDS |
TCAAATAGAGTAGAACCTGG+TGG | 0.656357 | 3_2:-85252961 | None:intergenic |
ACTGTGTCAAGAATGGGTGT+TGG | 0.665774 | 3_2:-85249335 | None:intergenic |
AAAGTTGATGAATATGCTCG+TGG | 0.672546 | 3_2:+85252928 | Msa0432930:CDS |
TGTCATGGCACCATCTGATG+AGG | 0.674548 | 3_2:+85255511 | Msa0432930:CDS |
ATAACTGACAAGCAGCAGGA+TGG | 0.691219 | 3_2:+85253144 | Msa0432930:CDS |
GTTGTATTACATAGGCCCAG+TGG | 0.704282 | 3_2:+85252993 | Msa0432930:CDS |
ACTAGATAGAGCATTGACAG+AGG | 0.707471 | 3_2:-85250238 | None:intergenic |
CATGATGTATTGCAACTGTG+AGG | 0.764353 | 3_2:-85249490 | None:intergenic |
GGCTGAACTTGTGCACATGG+TGG | 0.765179 | 3_2:+85255532 | Msa0432930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAATAAATAAATAAAT+CGG | + | chr3_2:85252622-85252641 | Msa0432930:intron | 0.0% |
!! | TAATATAATGTTATGAAATA+AGG | - | chr3_2:85249861-85249880 | None:intergenic | 10.0% |
!!! | AAAGTAATGTATATTTTTAA+AGG | - | chr3_2:85250811-85250830 | None:intergenic | 10.0% |
!!! | TTTTCTATATATACTATATT+AGG | - | chr3_2:85252314-85252333 | None:intergenic | 10.0% |
!! | ATATAATTAATATTTCCTAT+AGG | + | chr3_2:85254023-85254042 | Msa0432930:intron | 10.0% |
!!! | ACAATTTAATTTTATAAAGT+GGG | - | chr3_2:85254616-85254635 | None:intergenic | 10.0% |
!!! | AACAATTTAATTTTATAAAG+TGG | - | chr3_2:85254617-85254636 | None:intergenic | 10.0% |
!! | AATAAAAATATAAAAACATG+AGG | - | chr3_2:85255014-85255033 | None:intergenic | 10.0% |
!!! | ATAACATTATATTAGTTTCT+TGG | + | chr3_2:85249867-85249886 | Msa0432930:intron | 15.0% |
!!! | CATTTTGAAACAAATTTTTT+TGG | - | chr3_2:85250558-85250577 | None:intergenic | 15.0% |
!!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr3_2:85250661-85250680 | None:intergenic | 15.0% |
!! | AAATTATCCTTATTAACTAT+TGG | - | chr3_2:85250685-85250704 | None:intergenic | 15.0% |
!! | AATAGTTAATAAGGATAATT+TGG | + | chr3_2:85250684-85250703 | Msa0432930:intron | 15.0% |
!! | AATTGAATTAAAATTTGAGA+AGG | + | chr3_2:85251335-85251354 | Msa0432930:intron | 15.0% |
!! | TATAAATGTCAATTCAATTT+CGG | - | chr3_2:85251918-85251937 | None:intergenic | 15.0% |
!! | ACTATGAAATATATATGAAA+CGG | + | chr3_2:85252059-85252078 | Msa0432930:intron | 15.0% |
!!! | TTATTTTGAATGATAAAACA+TGG | - | chr3_2:85252776-85252795 | None:intergenic | 15.0% |
!!! | ATTTTGTTACATGTTTAAAA+TGG | + | chr3_2:85253322-85253341 | Msa0432930:intron | 15.0% |
!!! | TAAATGGTTTTACTAAAATT+TGG | - | chr3_2:85253848-85253867 | None:intergenic | 15.0% |
!!! | TTCAAATTTTCAAAATAATG+AGG | - | chr3_2:85254108-85254127 | None:intergenic | 15.0% |
!!! | AATTTAATTTTATAAAGTGG+GGG | - | chr3_2:85254614-85254633 | None:intergenic | 15.0% |
!!! | CAATTTAATTTTATAAAGTG+GGG | - | chr3_2:85254615-85254634 | None:intergenic | 15.0% |
!!! | TCTTTTGCTAAAAAAAAAAT+AGG | + | chr3_2:85254650-85254669 | Msa0432930:intron | 15.0% |
!! | GAACTAAAAAAATTTATTAG+AGG | - | chr3_2:85255060-85255079 | None:intergenic | 15.0% |
!! | AAGACAATAAGAAAAAAGAA+TGG | + | chr3_2:85249731-85249750 | Msa0432930:CDS | 20.0% |
!! | TGAACTGATGAAATTATTAT+AGG | + | chr3_2:85249978-85249997 | Msa0432930:intron | 20.0% |
!! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3_2:85250598-85250617 | None:intergenic | 20.0% |
!! | AAACTAACCAATAGTTAATA+AGG | + | chr3_2:85250675-85250694 | Msa0432930:intron | 20.0% |
!! | AATGATTAAAAGAAAGAGAA+TGG | - | chr3_2:85250718-85250737 | None:intergenic | 20.0% |
!! | GGTTAAAGAAATAAAAAGAA+GGG | - | chr3_2:85250919-85250938 | None:intergenic | 20.0% |
!! | AGGTTAAAGAAATAAAAAGA+AGG | - | chr3_2:85250920-85250939 | None:intergenic | 20.0% |
!! | CAATTTCAAAAATTGATAAG+AGG | + | chr3_2:85251287-85251306 | Msa0432930:intron | 20.0% |
!! | GTAAAAGGAATAAAAAATAG+AGG | + | chr3_2:85251535-85251554 | Msa0432930:intron | 20.0% |
!! | ATATATATTTCATAGTGGTT+TGG | - | chr3_2:85252055-85252074 | None:intergenic | 20.0% |
!! | GTTTCATATATATTTCATAG+TGG | - | chr3_2:85252060-85252079 | None:intergenic | 20.0% |
!! | AAATAGAAAAAATCATTACC+TGG | + | chr3_2:85252089-85252108 | Msa0432930:intron | 20.0% |
!! | ATTCAAAAAAACATGTTTGT+GGG | - | chr3_2:85252165-85252184 | None:intergenic | 20.0% |
!! | TATTCAAAAAAACATGTTTG+TGG | - | chr3_2:85252166-85252185 | None:intergenic | 20.0% |
!! | AGAAATATGTAAAAAGAAGA+TGG | + | chr3_2:85252205-85252224 | Msa0432930:intron | 20.0% |
!! | ATAGTATATATAGAAAACCT+AGG | + | chr3_2:85252317-85252336 | Msa0432930:intron | 20.0% |
!! | TAGTATATATAGAAAACCTA+GGG | + | chr3_2:85252318-85252337 | Msa0432930:intron | 20.0% |
!! | AAATTCACTGTATCTATTAA+AGG | + | chr3_2:85252442-85252461 | Msa0432930:intron | 20.0% |
!! | TAATAATGATGATCCTTATT+TGG | + | chr3_2:85252813-85252832 | Msa0432930:intron | 20.0% |
!! | ATAAAATGAGATTACAGTTT+AGG | + | chr3_2:85253254-85253273 | Msa0432930:intron | 20.0% |
!!! | ATAGAGGAAAATGAATATTT+TGG | - | chr3_2:85253447-85253466 | None:intergenic | 20.0% |
!! | ATAAACATTACACAGTAAAA+AGG | + | chr3_2:85253491-85253510 | Msa0432930:intron | 20.0% |
!! | GTATCATGATTATTATTGTT+TGG | - | chr3_2:85253565-85253584 | None:intergenic | 20.0% |
!! | TAATCAATAAATGAAGTGAT+TGG | - | chr3_2:85253711-85253730 | None:intergenic | 20.0% |
!!! | AAAATTTGGTGTTTTGATAA+TGG | - | chr3_2:85253834-85253853 | None:intergenic | 20.0% |
!! | AACAGTTTATTTATACAAGA+GGG | - | chr3_2:85254678-85254697 | None:intergenic | 20.0% |
!! | TAACAGTTTATTTATACAAG+AGG | - | chr3_2:85254679-85254698 | None:intergenic | 20.0% |
!! | AATCTCAGTAAATTAAATGA+GGG | - | chr3_2:85254758-85254777 | None:intergenic | 20.0% |
!! | AAATCTCAGTAAATTAAATG+AGG | - | chr3_2:85254759-85254778 | None:intergenic | 20.0% |
!!! | TCCTTTTTTAGTTAAAATGA+AGG | + | chr3_2:85254830-85254849 | Msa0432930:intron | 20.0% |
!!! | TCCTTCATTTTAACTAAAAA+AGG | - | chr3_2:85254834-85254853 | None:intergenic | 20.0% |
!! | CTAAAAAAATTTATTAGAGG+AGG | - | chr3_2:85255057-85255076 | None:intergenic | 20.0% |
!! | TAAAAAAATCCTCCAAATTT+GGG | - | chr3_2:85255084-85255103 | None:intergenic | 20.0% |
!! | GATCGCAAATTAAAATAAAA+CGG | - | chr3_2:85255240-85255259 | None:intergenic | 20.0% |
!! | GTAAACTAATTTCAAACTTA+AGG | + | chr3_2:85255721-85255740 | Msa0432930:intron | 20.0% |
!! | TAATTTATTCATACACAGAT+TGG | + | chr3_2:85255818-85255837 | Msa0432930:intron | 20.0% |
!! | AACTAATTACCTTAATTCTT+CGG | - | chr3_2:85256111-85256130 | None:intergenic | 20.0% |
!!! | TTTTTGCTTTCAAGAATATT+TGG | + | chr3_2:85256155-85256174 | Msa0432930:intron | 20.0% |
!!! | TTTTGCTTTCAAGAATATTT+GGG | + | chr3_2:85256156-85256175 | Msa0432930:intron | 20.0% |
!!! | AAATTTTGTTTTTCTTGTGT+TGG | + | chr3_2:85256234-85256253 | Msa0432930:intron | 20.0% |
!!! | TCTTTTCTGTACAATTAAAA+TGG | - | chr3_2:85256606-85256625 | None:intergenic | 20.0% |
!! | ATACTAACATAGGTATAATA+TGG | + | chr3_2:85256742-85256761 | Msa0432930:three_prime_UTR | 20.0% |
!!! | TGCAATTTTCTGTTAATTAA+AGG | - | chr3_2:85256827-85256846 | None:intergenic | 20.0% |
! | TTTGAAGATTTGAGTAATGA+TGG | + | chr3_2:85249127-85249146 | Msa0432930:exon | 25.0% |
! | TTGAAGATTTGAGTAATGAT+GGG | + | chr3_2:85249128-85249147 | Msa0432930:exon | 25.0% |
!! | TGATATTGATGATTTCTACT+GGG | + | chr3_2:85249304-85249323 | Msa0432930:CDS | 25.0% |
! | AAATAGAAGACAACTCTAAA+CGG | - | chr3_2:85249424-85249443 | None:intergenic | 25.0% |
! | AATATTACTGAATCCTAGTA+TGG | + | chr3_2:85249457-85249476 | Msa0432930:CDS | 25.0% |
! | TTTCATCAGTTCATTTAAGA+AGG | - | chr3_2:85249971-85249990 | None:intergenic | 25.0% |
!!! | TATGGAGTATATTTTGTTTC+AGG | + | chr3_2:85250027-85250046 | Msa0432930:intron | 25.0% |
!!! | AGTATATTTTGTTTCAGGAA+TGG | + | chr3_2:85250032-85250051 | Msa0432930:intron | 25.0% |
!! | TCATTTAAAGTTGAATGATG+TGG | - | chr3_2:85250425-85250444 | None:intergenic | 25.0% |
!!! | CTTTCCATTTTGATTTAATG+TGG | + | chr3_2:85250827-85250846 | Msa0432930:intron | 25.0% |
! | TTCTCCACATTAAATCAAAA+TGG | - | chr3_2:85250834-85250853 | None:intergenic | 25.0% |
! | ATCGGCAAAAAAAAAAAATC+TGG | - | chr3_2:85251016-85251035 | None:intergenic | 25.0% |
!!! | AGATTTTTTTTTTTTGCCGA+TGG | + | chr3_2:85251015-85251034 | Msa0432930:intron | 25.0% |
! | AATTGAAGCAAATCAGAAAT+GGG | - | chr3_2:85251106-85251125 | None:intergenic | 25.0% |
! | AAATTGAAGCAAATCAGAAA+TGG | - | chr3_2:85251107-85251126 | None:intergenic | 25.0% |
! | AACATGTATATTGGAATCAT+GGG | - | chr3_2:85251222-85251241 | None:intergenic | 25.0% |
! | AAACATGTATATTGGAATCA+TGG | - | chr3_2:85251223-85251242 | None:intergenic | 25.0% |
! | ATGAAAGAAAAAGATGAATC+TGG | - | chr3_2:85251263-85251282 | None:intergenic | 25.0% |
! | TGAATTAAAATTTGAGAAGG+AGG | + | chr3_2:85251338-85251357 | Msa0432930:intron | 25.0% |
! | GAATTAAAATTTGAGAAGGA+GGG | + | chr3_2:85251339-85251358 | Msa0432930:intron | 25.0% |
! | AATAAAAAATAGAGGTGATG+TGG | + | chr3_2:85251543-85251562 | Msa0432930:intron | 25.0% |
!! | ACGTTAACTACAATTTCTTT+TGG | - | chr3_2:85251963-85251982 | None:intergenic | 25.0% |
!! | CGGATCTTGATTAAATTTTT+GGG | + | chr3_2:85252025-85252044 | Msa0432930:intron | 25.0% |
!! | GGATCTTGATTAAATTTTTG+GGG | + | chr3_2:85252026-85252045 | Msa0432930:intron | 25.0% |
!!! | GATCTTGATTAAATTTTTGG+GGG | + | chr3_2:85252027-85252046 | Msa0432930:intron | 25.0% |
! | AATATATATGAAACGGTTTC+AGG | + | chr3_2:85252066-85252085 | Msa0432930:intron | 25.0% |
! | TTCAAAAAAACATGTTTGTG+GGG | - | chr3_2:85252164-85252183 | None:intergenic | 25.0% |
! | AGTATATATAGAAAACCTAG+GGG | + | chr3_2:85252319-85252338 | Msa0432930:intron | 25.0% |
!! | TTTAATTGATAGTTGATCAG+TGG | - | chr3_2:85252380-85252399 | None:intergenic | 25.0% |
! | TGTTATAACTGATGAAAATC+AGG | + | chr3_2:85253095-85253114 | Msa0432930:CDS | 25.0% |
!!! | TACTGATTTAGTTAAAAACG+AGG | + | chr3_2:85253281-85253300 | Msa0432930:intron | 25.0% |
! | TAGACAATACAAACAATGTA+AGG | - | chr3_2:85253535-85253554 | None:intergenic | 25.0% |
! | TCATGATTATTATTGTTTGG+TGG | - | chr3_2:85253562-85253581 | None:intergenic | 25.0% |
! | GAGTAAACTATATGGATAAA+TGG | + | chr3_2:85253805-85253824 | Msa0432930:intron | 25.0% |
! | TTTAGTAAAACCATTTACAC+TGG | + | chr3_2:85253851-85253870 | Msa0432930:intron | 25.0% |
! | TTAGTAAAACCATTTACACT+GGG | + | chr3_2:85253852-85253871 | Msa0432930:intron | 25.0% |
! | TAAAAAATACCCAGTGTAAA+TGG | - | chr3_2:85253864-85253883 | None:intergenic | 25.0% |
!!! | TTTACACTGGGTATTTTTTA+AGG | + | chr3_2:85253864-85253883 | Msa0432930:intron | 25.0% |
!! | TTTTCTCTCAATGTTTTCTT+AGG | + | chr3_2:85253887-85253906 | Msa0432930:intron | 25.0% |
!! | GTATGTTAACTTTTCAGAAT+TGG | + | chr3_2:85254166-85254185 | Msa0432930:intron | 25.0% |
! | TTATGGAAAAATTTCCAGAT+AGG | + | chr3_2:85254333-85254352 | Msa0432930:CDS | 25.0% |
! | ATCTCAGTAAATTAAATGAG+GGG | - | chr3_2:85254757-85254776 | None:intergenic | 25.0% |
!!! | TCCCTTTTTAAGTTTGTTTT+AGG | + | chr3_2:85254786-85254805 | Msa0432930:intron | 25.0% |
! | GCCTAAAACAAACTTAAAAA+GGG | - | chr3_2:85254790-85254809 | None:intergenic | 25.0% |
!! | TTTTAGGCCTAGATATATAT+TGG | + | chr3_2:85254802-85254821 | Msa0432930:intron | 25.0% |
! | TTTAGGCCTAGATATATATT+GGG | + | chr3_2:85254803-85254822 | Msa0432930:intron | 25.0% |
! | ATTGTACTTTATGAACCTTA+AGG | + | chr3_2:85254907-85254926 | Msa0432930:intron | 25.0% |
! | AAAAAAATCCTCCAAATTTG+GGG | - | chr3_2:85255083-85255102 | None:intergenic | 25.0% |
! | GTAAAAAAATCCTCCAAATT+TGG | - | chr3_2:85255085-85255104 | None:intergenic | 25.0% |
! | ACTTTCATGAGAAAGTAATT+AGG | + | chr3_2:85255196-85255215 | Msa0432930:intron | 25.0% |
! | TAACACCTATTACTTTGTAA+AGG | + | chr3_2:85255698-85255717 | Msa0432930:intron | 25.0% |
! | AACACCTATTACTTTGTAAA+GGG | + | chr3_2:85255699-85255718 | Msa0432930:intron | 25.0% |
! | TTTACCCTTTACAAAGTAAT+AGG | - | chr3_2:85255706-85255725 | None:intergenic | 25.0% |
! | TACGATACTATGACAATATT+GGG | - | chr3_2:85255770-85255789 | None:intergenic | 25.0% |
! | ATACGATACTATGACAATAT+TGG | - | chr3_2:85255771-85255790 | None:intergenic | 25.0% |
! | TATTCTTGAAAGCAAAAAAC+AGG | - | chr3_2:85256153-85256172 | None:intergenic | 25.0% |
!!! | GGGTTTTATGAATGTATTAT+TGG | + | chr3_2:85256176-85256195 | Msa0432930:intron | 25.0% |
!!! | AAAAGAGTGTCAAATAGAAA+GGG | + | chr3_2:85256620-85256639 | Msa0432930:three_prime_UTR | 25.0% |
TTGGTTCACAAAAAAACCAA+AGG | - | chr3_2:85248985-85249004 | None:intergenic | 30.0% | |
! | CGTTTTCTAACAATTCGTAT+TGG | + | chr3_2:85249089-85249108 | Msa0432930:five_prime_UTR | 30.0% |
TCTAGAAGAAGAAGAATACA+AGG | - | chr3_2:85249255-85249274 | None:intergenic | 30.0% | |
CAGTAGAAATCATCAATATC+AGG | - | chr3_2:85249305-85249324 | None:intergenic | 30.0% | |
! | CTGATATTGATGATTTCTAC+TGG | + | chr3_2:85249303-85249322 | Msa0432930:CDS | 30.0% |
! | TTTTGAACTGTGTCAAGAAT+GGG | - | chr3_2:85249344-85249363 | None:intergenic | 30.0% |
! | AGAGTTGTCTTCTATTTTGT+CGG | + | chr3_2:85249427-85249446 | Msa0432930:CDS | 30.0% |
! | CAAAATTTGAAATGAGAAGC+AGG | - | chr3_2:85249573-85249592 | None:intergenic | 30.0% |
CAGACAAATAACAAACAAGT+TGG | - | chr3_2:85249666-85249685 | None:intergenic | 30.0% | |
TATGCACATAAGATACTTAC+AGG | + | chr3_2:85249692-85249711 | Msa0432930:CDS | 30.0% | |
AGAAAAAAGAATGGTCTTTC+TGG | + | chr3_2:85249740-85249759 | Msa0432930:CDS | 30.0% | |
CAAATGTTCTCAAAGTCATA+TGG | + | chr3_2:85250009-85250028 | Msa0432930:intron | 30.0% | |
AAACTTTCGGAAAGATTTAC+TGG | - | chr3_2:85250283-85250302 | None:intergenic | 30.0% | |
!!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr3_2:85250766-85250785 | None:intergenic | 30.0% |
!! | AAACGACACTCATTTTGAAA+CGG | + | chr3_2:85250767-85250786 | Msa0432930:intron | 30.0% |
ATTTAATGTGGAGAATTGCT+AGG | + | chr3_2:85250839-85250858 | Msa0432930:intron | 30.0% | |
TTTAATGTGGAGAATTGCTA+GGG | + | chr3_2:85250840-85250859 | Msa0432930:intron | 30.0% | |
! | AGTGTGTTAAAAGTGTGTTA+GGG | - | chr3_2:85250873-85250892 | None:intergenic | 30.0% |
!!! | ATGATGTGGCTAGTTTTTAT+TGG | - | chr3_2:85250896-85250915 | None:intergenic | 30.0% |
AATAAAAAGAAGGGATGATG+TGG | - | chr3_2:85250910-85250929 | None:intergenic | 30.0% | |
! | TTATTTCTTTAACCTGCAAC+CGG | + | chr3_2:85250925-85250944 | Msa0432930:intron | 30.0% |
!! | AAGTACTTTGTTGTTTGTAC+CGG | - | chr3_2:85250947-85250966 | None:intergenic | 30.0% |
AAAAAAAATCTGGAGGAAGA+TGG | - | chr3_2:85251006-85251025 | None:intergenic | 30.0% | |
GGCAAAAAAAAAAAATCTGG+AGG | - | chr3_2:85251013-85251032 | None:intergenic | 30.0% | |
TTCTCCTCCTTCAAAAATAA+CGG | + | chr3_2:85251064-85251083 | Msa0432930:intron | 30.0% | |
!! | TTCTGATTTGCTTCAATTTG+TGG | + | chr3_2:85251108-85251127 | Msa0432930:intron | 30.0% |
! | TTTTCATGGATCTTCAATGA+AGG | - | chr3_2:85251176-85251195 | None:intergenic | 30.0% |
!! | GAGCATTGAAACATGTATAT+TGG | - | chr3_2:85251231-85251250 | None:intergenic | 30.0% |
! | TTATTCCTTTTACCTGTTAC+AGG | - | chr3_2:85251528-85251547 | None:intergenic | 30.0% |
!! | GTGATGTGGCTAATTTTAAT+TGG | + | chr3_2:85251557-85251576 | Msa0432930:intron | 30.0% |
CACATTAAAGAGAAATGCTA+GGG | - | chr3_2:85251615-85251634 | None:intergenic | 30.0% | |
TCACATTAAAGAGAAATGCT+AGG | - | chr3_2:85251616-85251635 | None:intergenic | 30.0% | |
!! | AACCAAGCATTTCTGTTTTT+GGG | - | chr3_2:85251698-85251717 | None:intergenic | 30.0% |
GTAGTTAACGTACAATTGAA+CGG | + | chr3_2:85251972-85251991 | Msa0432930:intron | 30.0% | |
TAGTTAACGTACAATTGAAC+GGG | + | chr3_2:85251973-85251992 | Msa0432930:intron | 30.0% | |
GTTAAATGTATCAACTACAG+TGG | + | chr3_2:85252002-85252021 | Msa0432930:intron | 30.0% | |
! | GCGGATCTTGATTAAATTTT+TGG | + | chr3_2:85252024-85252043 | Msa0432930:intron | 30.0% |
TTCAAACAAGTTAAACCACT+AGG | - | chr3_2:85252115-85252134 | None:intergenic | 30.0% | |
TCTATTAAAGGAATGAGAAG+AGG | + | chr3_2:85252454-85252473 | Msa0432930:intron | 30.0% | |
!!! | AAGGAGGGGAAATTTTTTAT+TGG | + | chr3_2:85252501-85252520 | Msa0432930:intron | 30.0% |
! | TTCATGGGTTGTATATCTTA+AGG | + | chr3_2:85252730-85252749 | Msa0432930:intron | 30.0% |
! | TCATGGGTTGTATATCTTAA+GGG | + | chr3_2:85252731-85252750 | Msa0432930:intron | 30.0% |
CAACAAGAAATAGCACATAA+TGG | - | chr3_2:85253214-85253233 | None:intergenic | 30.0% | |
!! | TGCTATTTCTTGTTGTAGAA+TGG | + | chr3_2:85253219-85253238 | Msa0432930:intron | 30.0% |
TTTAGTTAAAAACGAGGAAC+TGG | + | chr3_2:85253287-85253306 | Msa0432930:intron | 30.0% | |
ATAGAACAAATGTAGAAGTG+TGG | + | chr3_2:85253352-85253371 | Msa0432930:intron | 30.0% | |
AAACATTGCAACACATATAG+AGG | - | chr3_2:85253463-85253482 | None:intergenic | 30.0% | |
ATGAAACAAATTCAACAAGG+GGG | - | chr3_2:85253664-85253683 | None:intergenic | 30.0% | |
CATGAAACAAATTCAACAAG+GGG | - | chr3_2:85253665-85253684 | None:intergenic | 30.0% | |
GCATGAAACAAATTCAACAA+GGG | - | chr3_2:85253666-85253685 | None:intergenic | 30.0% | |
AGCATGAAACAAATTCAACA+AGG | - | chr3_2:85253667-85253686 | None:intergenic | 30.0% | |
!!! | GATTGGTTTCATTTTCTGAA+AGG | - | chr3_2:85253694-85253713 | None:intergenic | 30.0% |
AGAGTTAGAGTTTATCTGTA+AGG | - | chr3_2:85253734-85253753 | None:intergenic | 30.0% | |
GCTTGGGAAGAATATTTAAA+TGG | - | chr3_2:85253924-85253943 | None:intergenic | 30.0% | |
AAACCAACACTGCATTTATT+TGG | + | chr3_2:85253978-85253997 | Msa0432930:intron | 30.0% | |
GAAACTAAGCTATAATTTCC+TGG | - | chr3_2:85254070-85254089 | None:intergenic | 30.0% | |
TTTCCCAATCACTTTCTAAT+TGG | + | chr3_2:85254139-85254158 | Msa0432930:intron | 30.0% | |
CAACCAATTAGAAAGTGATT+GGG | - | chr3_2:85254145-85254164 | None:intergenic | 30.0% | |
ACAACCAATTAGAAAGTGAT+TGG | - | chr3_2:85254146-85254165 | None:intergenic | 30.0% | |
TCCATAAACAGTTTAAGTGA+CGG | - | chr3_2:85254320-85254339 | None:intergenic | 30.0% | |
! | TCCAGATAGGATTTTTAATG+TGG | + | chr3_2:85254346-85254365 | Msa0432930:CDS | 30.0% |
! | CCAGATAGGATTTTTAATGT+GGG | + | chr3_2:85254347-85254366 | Msa0432930:CDS | 30.0% |
! | GAAGAAGGTATAATGCAAAA+TGG | - | chr3_2:85254431-85254450 | None:intergenic | 30.0% |
TCATGATAACCACTATATGT+AGG | + | chr3_2:85254502-85254521 | Msa0432930:intron | 30.0% | |
GGTCTTTACTAGGAAATAAA+AGG | - | chr3_2:85254736-85254755 | None:intergenic | 30.0% | |
GGCCTAAAACAAACTTAAAA+AGG | - | chr3_2:85254791-85254810 | None:intergenic | 30.0% | |
! | TATTAGAGGAGGATTTTAGA+GGG | - | chr3_2:85255046-85255065 | None:intergenic | 30.0% |
! | TTATTAGAGGAGGATTTTAG+AGG | - | chr3_2:85255047-85255066 | None:intergenic | 30.0% |
!!! | TTTTTTAGTTCCCCCAAATT+TGG | + | chr3_2:85255069-85255088 | Msa0432930:intron | 30.0% |
AAAAAATCCTCCAAATTTGG+GGG | - | chr3_2:85255082-85255101 | None:intergenic | 30.0% | |
AACTCTTGCACATTACATAA+TGG | + | chr3_2:85255311-85255330 | Msa0432930:intron | 30.0% | |
CTTACCAAATATGATTGTCA+TGG | + | chr3_2:85255496-85255515 | Msa0432930:CDS | 30.0% | |
ACGATACTATGACAATATTG+GGG | - | chr3_2:85255769-85255788 | None:intergenic | 30.0% | |
TATTCATACACAGATTGGAA+AGG | + | chr3_2:85255823-85255842 | Msa0432930:intron | 30.0% | |
ATTCATACACAGATTGGAAA+GGG | + | chr3_2:85255824-85255843 | Msa0432930:intron | 30.0% | |
CAACGGTAATTAGAAAAGAA+TGG | - | chr3_2:85256021-85256040 | None:intergenic | 30.0% | |
! | TTCTTTTCTAATTACCGTTG+AGG | + | chr3_2:85256021-85256040 | Msa0432930:CDS | 30.0% |
AGCAATAAATTGAGCAACAT+GGG | - | chr3_2:85256071-85256090 | None:intergenic | 30.0% | |
! | TAATTAGTTTAAGCGTGAGA+AGG | + | chr3_2:85256122-85256141 | Msa0432930:intron | 30.0% |
!! | AACAAAATTTAGTCTTGCCT+TGG | - | chr3_2:85256224-85256243 | None:intergenic | 30.0% |
TAACTGTCTGGTAAAACAAT+TGG | - | chr3_2:85256310-85256329 | None:intergenic | 30.0% | |
CACAATTCACAAACACATAA+AGG | - | chr3_2:85256440-85256459 | None:intergenic | 30.0% | |
! | AATAAAGCCTTTTGCATTCT+TGG | - | chr3_2:85256505-85256524 | None:intergenic | 30.0% |
!! | AGAATGCAAAAGGCTTTATT+AGG | + | chr3_2:85256505-85256524 | Msa0432930:three_prime_UTR | 30.0% |
!! | GAAAAGAGTGTCAAATAGAA+AGG | + | chr3_2:85256619-85256638 | Msa0432930:three_prime_UTR | 30.0% |
!! | AAAGAGTGTCAAATAGAAAG+GGG | + | chr3_2:85256621-85256640 | Msa0432930:three_prime_UTR | 30.0% |
!!! | AGAATGCAATACTTGTTTTG+AGG | + | chr3_2:85256719-85256738 | Msa0432930:three_prime_UTR | 30.0% |
!!! | TGTTTTGAGGATACTAACAT+AGG | + | chr3_2:85256732-85256751 | Msa0432930:three_prime_UTR | 30.0% |
ACAGAAAATTGCAAGTGTTA+AGG | + | chr3_2:85256834-85256853 | Msa0432930:three_prime_UTR | 30.0% | |
GAAAGAACATTTCCATCGTT+TGG | - | chr3_2:85248948-85248967 | None:intergenic | 35.0% | |
ACTTTCGTTAACACTGTGTT+TGG | - | chr3_2:85249004-85249023 | None:intergenic | 35.0% | |
CGAGTGATCAAAACAGATTA+TGG | + | chr3_2:85249035-85249054 | Msa0432930:five_prime_UTR | 35.0% | |
AATGGAAAGGGATCACAAAT+GGG | - | chr3_2:85249172-85249191 | None:intergenic | 35.0% | |
! | ATACAAGGTGATTCTGGAAA+GGG | - | chr3_2:85249240-85249259 | None:intergenic | 35.0% |
! | AATACAAGGTGATTCTGGAA+AGG | - | chr3_2:85249241-85249260 | None:intergenic | 35.0% |
AGAAGAATACAAGGTGATTC+TGG | - | chr3_2:85249246-85249265 | None:intergenic | 35.0% | |
!! | GTTTTGAACTGTGTCAAGAA+TGG | - | chr3_2:85249345-85249364 | None:intergenic | 35.0% |
AAAGGTTCTTCAAGCAAAGA+GGG | - | chr3_2:85249367-85249386 | None:intergenic | 35.0% | |
! | GAGTTGTCTTCTATTTTGTC+GGG | + | chr3_2:85249428-85249447 | Msa0432930:CDS | 35.0% |
TCCAGTTGACAAGATATTGT+GGG | + | chr3_2:85249523-85249542 | Msa0432930:CDS | 35.0% | |
! | TCAAATTTTGCCCTTTGTAG+TGG | + | chr3_2:85249583-85249602 | Msa0432930:intron | 35.0% |
GCATAACTTTCCACTACAAA+GGG | - | chr3_2:85249596-85249615 | None:intergenic | 35.0% | |
TGCATAACTTTCCACTACAA+AGG | - | chr3_2:85249597-85249616 | None:intergenic | 35.0% | |
CACATAAGATACTTACAGGA+CGG | + | chr3_2:85249696-85249715 | Msa0432930:CDS | 35.0% | |
ATGTTCCGATCATATGTATG+TGG | + | chr3_2:85249920-85249939 | Msa0432930:intron | 35.0% | |
TGTTCCGATCATATGTATGT+GGG | + | chr3_2:85249921-85249940 | Msa0432930:intron | 35.0% | |
TCAACCCACATACATATGAT+CGG | - | chr3_2:85249928-85249947 | None:intergenic | 35.0% | |
CAGTTGCAAGGGATATTAAA+GGG | + | chr3_2:85250055-85250074 | Msa0432930:CDS | 35.0% | |
TAGTTGCAGTTATCAGCAAT+TGG | + | chr3_2:85250091-85250110 | Msa0432930:CDS | 35.0% | |
AGGTTACTTGGACTCAAATT+TGG | + | chr3_2:85250155-85250174 | Msa0432930:CDS | 35.0% | |
TTACTTGGACTCAAATTTGG+TGG | + | chr3_2:85250158-85250177 | Msa0432930:CDS | 35.0% | |
!! | CAATTTTTGGGAGTAAAGAG+TGG | - | chr3_2:85250203-85250222 | None:intergenic | 35.0% |
CTCTTTACTCCCAAAAATTG+AGG | + | chr3_2:85250203-85250222 | Msa0432930:CDS | 35.0% | |
TTTACTCCCAAAAATTGAGG+AGG | + | chr3_2:85250206-85250225 | Msa0432930:CDS | 35.0% | |
TTACTCCCAAAAATTGAGGA+GGG | + | chr3_2:85250207-85250226 | Msa0432930:CDS | 35.0% | |
TTCGGAAAGATTTACTGGAT+TGG | - | chr3_2:85250278-85250297 | None:intergenic | 35.0% | |
TAGCAGCTTCTCTAAACTTT+CGG | - | chr3_2:85250296-85250315 | None:intergenic | 35.0% | |
AAAGTTTAGAGAAGCTGCTA+AGG | + | chr3_2:85250296-85250315 | Msa0432930:CDS | 35.0% | |
! | ATCTTGCATTTTCTCTGCAA+AGG | - | chr3_2:85250340-85250359 | None:intergenic | 35.0% |
GTTGTTAGCAATAGCATACA+TGG | + | chr3_2:85250385-85250404 | Msa0432930:intron | 35.0% | |
TGCTAAGTAAGCACTTCAAA+AGG | + | chr3_2:85250470-85250489 | Msa0432930:intron | 35.0% | |
GCTAAGTAAGCACTTCAAAA+GGG | + | chr3_2:85250471-85250490 | Msa0432930:intron | 35.0% | |
!! | AAGCGACACTCATTTTGAAA+CGG | - | chr3_2:85250532-85250551 | None:intergenic | 35.0% |
! | TGTGCAGAGTATTAATTGGA+GGG | - | chr3_2:85250632-85250651 | None:intergenic | 35.0% |
! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr3_2:85250636-85250655 | None:intergenic | 35.0% |
! | GAGTGTGTTAAAAGTGTGTT+AGG | - | chr3_2:85250874-85250893 | None:intergenic | 35.0% |
!!! | TATGGTGCCGTTATTTTTGA+AGG | - | chr3_2:85251074-85251093 | None:intergenic | 35.0% |
TTCTTGAAAAGGGATGTACA+GGG | - | chr3_2:85251136-85251155 | None:intergenic | 35.0% | |
CAATGAAGGAAATATCAGCA+CGG | - | chr3_2:85251162-85251181 | None:intergenic | 35.0% | |
AAATGTCACCATCCTCAATT+TGG | + | chr3_2:85251194-85251213 | Msa0432930:intron | 35.0% | |
AAAAGATGAATCTGGTGTGA+AGG | - | chr3_2:85251255-85251274 | None:intergenic | 35.0% | |
ATTGAAATTGAGAGGGAGAA+TGG | + | chr3_2:85251363-85251382 | Msa0432930:intron | 35.0% | |
TTGAAATTGAGAGGGAGAAT+GGG | + | chr3_2:85251364-85251383 | Msa0432930:intron | 35.0% | |
TAGAGATTGTCACAGTAGAA+AGG | + | chr3_2:85251448-85251467 | Msa0432930:intron | 35.0% | |
AGAGATTGTCACAGTAGAAA+GGG | + | chr3_2:85251449-85251468 | Msa0432930:intron | 35.0% | |
!! | TGTGAAAAGAGAGTGTTAGA+GGG | + | chr3_2:85251584-85251603 | Msa0432930:intron | 35.0% |
!!! | ACCAAGCATTTCTGTTTTTG+GGG | - | chr3_2:85251697-85251716 | None:intergenic | 35.0% |
! | CAACCAAGCATTTCTGTTTT+TGG | - | chr3_2:85251699-85251718 | None:intergenic | 35.0% |
TGGTTGTATACAATGAAGCA+TGG | + | chr3_2:85251713-85251732 | Msa0432930:intron | 35.0% | |
CGTCGTTCATTGAAAAACAT+AGG | + | chr3_2:85251781-85251800 | Msa0432930:intron | 35.0% | |
AAATGTATCAACTACAGTGG+CGG | + | chr3_2:85252005-85252024 | Msa0432930:intron | 35.0% | |
!! | TAACTTGTTTGAAAGCAGCA+AGG | + | chr3_2:85252122-85252141 | Msa0432930:intron | 35.0% |
! | AACTTGTTTGAAAGCAGCAA+GGG | + | chr3_2:85252123-85252142 | Msa0432930:intron | 35.0% |
GTAGTCTAAAAATCTCCCAA+TGG | - | chr3_2:85252251-85252270 | None:intergenic | 35.0% | |
! | AATTGATAGTTGATCAGTGG+CGG | - | chr3_2:85252377-85252396 | None:intergenic | 35.0% |
GAATGAGAAGAGGTAACTAA+AGG | + | chr3_2:85252464-85252483 | Msa0432930:intron | 35.0% | |
GATCATTACGATATAGAGAC+TGG | - | chr3_2:85252842-85252861 | None:intergenic | 35.0% | |
!! | AAAGTTGATGAATATGCTCG+TGG | + | chr3_2:85252928-85252947 | Msa0432930:CDS | 35.0% |
TCTTCAAATAGAGTAGAACC+TGG | - | chr3_2:85252967-85252986 | None:intergenic | 35.0% | |
TCTACTCTATTTGAAGAGCT+TGG | + | chr3_2:85252970-85252989 | Msa0432930:CDS | 35.0% | |
CTACTCTATTTGAAGAGCTT+GGG | + | chr3_2:85252971-85252990 | Msa0432930:CDS | 35.0% | |
TCTTCAAGAAGTAGCTTCTT+TGG | + | chr3_2:85253047-85253066 | Msa0432930:CDS | 35.0% | |
AGTAGCTTCTTTGGATTCAA+TGG | + | chr3_2:85253056-85253075 | Msa0432930:CDS | 35.0% | |
GTAGCTTCTTTGGATTCAAT+GGG | + | chr3_2:85253057-85253076 | Msa0432930:CDS | 35.0% | |
GTTATAACATGAACCAAGAC+AGG | - | chr3_2:85253084-85253103 | None:intergenic | 35.0% | |
! | ACAAATGTAGAAGTGTGGTA+CGG | + | chr3_2:85253357-85253376 | Msa0432930:intron | 35.0% |
TATGTGTTGCAATGTTTAGC+AGG | + | chr3_2:85253466-85253485 | Msa0432930:intron | 35.0% | |
! | TACTTTTAATGTGCCTGAGT+GGG | + | chr3_2:85253616-85253635 | Msa0432930:intron | 35.0% |
TGAAACAAATTCAACAAGGG+GGG | - | chr3_2:85253663-85253682 | None:intergenic | 35.0% | |
TTTACTCCAACCAGTAGATT+GGG | - | chr3_2:85253792-85253811 | None:intergenic | 35.0% | |
ACTGGTTGGAGTAAACTATA+TGG | + | chr3_2:85253797-85253816 | Msa0432930:intron | 35.0% | |
TTTCAGCTCATATCAGGAAA+TGG | - | chr3_2:85253961-85253980 | None:intergenic | 35.0% | |
AAGCCAAATAAATGCAGTGT+TGG | - | chr3_2:85253984-85254003 | None:intergenic | 35.0% | |
ATTTCCTGGTTTCAAAAGCA+TGG | - | chr3_2:85254056-85254075 | None:intergenic | 35.0% | |
!! | TCTGATTTGTTAGACAATGC+TGG | + | chr3_2:85254194-85254213 | Msa0432930:CDS | 35.0% |
! | ATTTGTTAGACAATGCTGGT+CGG | + | chr3_2:85254198-85254217 | Msa0432930:CDS | 35.0% |
AACATATGGTGATTGCTTTG+TGG | + | chr3_2:85254226-85254245 | Msa0432930:CDS | 35.0% | |
TGAGAAAGACAAAGACATTG+TGG | + | chr3_2:85254268-85254287 | Msa0432930:CDS | 35.0% | |
CCCACATTAAAAATCCTATC+TGG | - | chr3_2:85254350-85254369 | None:intergenic | 35.0% | |
!! | TTTGCTTCTGGTTTATCATG+TGG | + | chr3_2:85254395-85254414 | Msa0432930:CDS | 35.0% |
ATAAGTATGAACCTGGTCAT+AGG | - | chr3_2:85254468-85254487 | None:intergenic | 35.0% | |
AGCTGAAATAAGTATGAACC+TGG | - | chr3_2:85254475-85254494 | None:intergenic | 35.0% | |
TGTCTGTTACCTACATATAG+TGG | - | chr3_2:85254514-85254533 | None:intergenic | 35.0% | |
! | AGAACATCCTATCTTTTGTC+AGG | + | chr3_2:85254549-85254568 | Msa0432930:intron | 35.0% |
! | GAACATCCTATCTTTTGTCA+GGG | + | chr3_2:85254550-85254569 | Msa0432930:intron | 35.0% |
TAAAGTGGGGGTCTAAAAAA+AGG | - | chr3_2:85254602-85254621 | None:intergenic | 35.0% | |
TTAAATGAGGGGTCTTTACT+AGG | - | chr3_2:85254746-85254765 | None:intergenic | 35.0% | |
TGCTTACAATTTGGCAGTTA+AGG | - | chr3_2:85254878-85254897 | None:intergenic | 35.0% | |
TGCCAAATTGTAAGCAATGA+AGG | + | chr3_2:85254882-85254901 | Msa0432930:intron | 35.0% | |
GCCAAATTGTAAGCAATGAA+GGG | + | chr3_2:85254883-85254902 | Msa0432930:intron | 35.0% | |
CCAAATTGTAAGCAATGAAG+GGG | + | chr3_2:85254884-85254903 | Msa0432930:intron | 35.0% | |
TCAATTCCCATACTTCCTTA+GGG | - | chr3_2:85255160-85255179 | None:intergenic | 35.0% | |
!! | TTAATTTGCGATCTGTGAGT+TGG | + | chr3_2:85255247-85255266 | Msa0432930:intron | 35.0% |
ATTCTGTTCTGCATACAAGT+AGG | - | chr3_2:85255287-85255306 | None:intergenic | 35.0% | |
TTATATCAAATGCTCCACAC+TGG | - | chr3_2:85255463-85255482 | None:intergenic | 35.0% | |
! | ATGATCAACCAGTTTGCTTT+CGG | + | chr3_2:85255573-85255592 | Msa0432930:CDS | 35.0% |
AAAGACGAAGCTATACATGA+TGG | + | chr3_2:85255620-85255639 | Msa0432930:CDS | 35.0% | |
! | ACATGATGGAATTCCAATTG+AGG | + | chr3_2:85255634-85255653 | Msa0432930:CDS | 35.0% |
GTTTATCAAGAAAACAGCGT+TGG | - | chr3_2:85255667-85255686 | None:intergenic | 35.0% | |
TACTATGACAATATTGGGGA+AGG | - | chr3_2:85255765-85255784 | None:intergenic | 35.0% | |
TACCACTCCTAAGTTAAAGA+GGG | - | chr3_2:85255797-85255816 | None:intergenic | 35.0% | |
AAGGGAAGAATTCTTGTTGA+AGG | + | chr3_2:85255842-85255861 | Msa0432930:CDS | 35.0% | |
AGGTAAAGATGTTGCCTTAT+TGG | + | chr3_2:85255862-85255881 | Msa0432930:CDS | 35.0% | |
! | GGTAAAGATGTTGCCTTATT+GGG | + | chr3_2:85255863-85255882 | Msa0432930:CDS | 35.0% |
CATTGATCCATATCCCAATA+AGG | - | chr3_2:85255879-85255898 | None:intergenic | 35.0% | |
CTTATTGGGATATGGATCAA+TGG | + | chr3_2:85255877-85255896 | Msa0432930:CDS | 35.0% | |
AATGGTTCAGAACTGTCTAA+AGG | + | chr3_2:85255895-85255914 | Msa0432930:CDS | 35.0% | |
CATTCACTTCTTGCAAATCT+TGG | + | chr3_2:85255920-85255939 | Msa0432930:CDS | 35.0% | |
TTTCTAATTACCGTTGAGGA+AGG | + | chr3_2:85256025-85256044 | Msa0432930:CDS | 35.0% | |
TTCTAATTACCGTTGAGGAA+GGG | + | chr3_2:85256026-85256045 | Msa0432930:CDS | 35.0% | |
GAGCAATAAATTGAGCAACA+TGG | - | chr3_2:85256072-85256091 | None:intergenic | 35.0% | |
GCTCAATTTATTGCTCTTGA+TGG | + | chr3_2:85256076-85256095 | Msa0432930:CDS | 35.0% | |
GCATGTTCAATATAACTGTC+TGG | - | chr3_2:85256322-85256341 | None:intergenic | 35.0% | |
AAGAGAACCAAGAATGCAAA+AGG | + | chr3_2:85256495-85256514 | Msa0432930:three_prime_UTR | 35.0% | |
!! | TTAGTTCTGATTTGCATGTC+TGG | + | chr3_2:85256559-85256578 | Msa0432930:three_prime_UTR | 35.0% |
TCTGGTGAAAAAAGAGATCA+TGG | + | chr3_2:85256577-85256596 | Msa0432930:three_prime_UTR | 35.0% | |
CTGGTGAAAAAAGAGATCAT+GGG | + | chr3_2:85256578-85256597 | Msa0432930:three_prime_UTR | 35.0% | |
!!! | CTTCAACTTATTTTGCTGTG+AGG | + | chr3_2:85256776-85256795 | Msa0432930:three_prime_UTR | 35.0% |
GGTCAATTTGTCGTCTCATA+CGG | + | chr3_2:85249056-85249075 | Msa0432930:five_prime_UTR | 40.0% | |
GAATGGAAAGGGATCACAAA+TGG | - | chr3_2:85249173-85249192 | None:intergenic | 40.0% | |
TTAGGGTTTGGGAATGGAAA+GGG | - | chr3_2:85249184-85249203 | None:intergenic | 40.0% | |
! | GATTCTGGAAAGGGGAAATT+GGG | - | chr3_2:85249231-85249250 | None:intergenic | 40.0% |
! | TGATTCTGGAAAGGGGAAAT+TGG | - | chr3_2:85249232-85249251 | None:intergenic | 40.0% |
! | TACAAGGTGATTCTGGAAAG+GGG | - | chr3_2:85249239-85249258 | None:intergenic | 40.0% |
GAAAGGTTCTTCAAGCAAAG+AGG | - | chr3_2:85249368-85249387 | None:intergenic | 40.0% | |
CATGATGTATTGCAACTGTG+AGG | - | chr3_2:85249493-85249512 | None:intergenic | 40.0% | |
CTCCAGTTGACAAGATATTG+TGG | + | chr3_2:85249522-85249541 | Msa0432930:CDS | 40.0% | |
TCCCACAATATCTTGTCAAC+TGG | - | chr3_2:85249527-85249546 | None:intergenic | 40.0% | |
GACAAGATATTGTGGGATGT+CGG | + | chr3_2:85249530-85249549 | Msa0432930:CDS | 40.0% | |
GAGAGTGAATACGATGCATT+TGG | + | chr3_2:85249779-85249798 | Msa0432930:CDS | 40.0% | |
AACAGTATATCTGCTGGACT+TGG | + | chr3_2:85249818-85249837 | Msa0432930:CDS | 40.0% | |
GCAGTTGCAAGGGATATTAA+AGG | + | chr3_2:85250054-85250073 | Msa0432930:CDS | 40.0% | |
AGCAATTGGACAACTATGTC+TGG | + | chr3_2:85250105-85250124 | Msa0432930:CDS | 40.0% | |
AATGAGCAATGCAGGTTACT+TGG | + | chr3_2:85250143-85250162 | Msa0432930:CDS | 40.0% | |
!! | TTTTTGGGAGTAAAGAGTGG+CGG | - | chr3_2:85250200-85250219 | None:intergenic | 40.0% |
!! | ACTAGATAGAGCATTGACAG+AGG | - | chr3_2:85250241-85250260 | None:intergenic | 40.0% |
! | TTGCATTTTCTCTGCAAAGG+AGG | - | chr3_2:85250337-85250356 | None:intergenic | 40.0% |
!!! | GACACTCATTTTGAAACGGA+GGG | - | chr3_2:85250771-85250790 | None:intergenic | 40.0% |
! | GTGTGCAGAGTATTAATTGG+AGG | - | chr3_2:85250633-85250652 | None:intergenic | 40.0% |
!!! | GACACTCATTTTGAAACGGA+GGG | + | chr3_2:85250771-85250790 | Msa0432930:intron | 40.0% |
! | AACGGAGGGAGTAACTTTTA+AGG | + | chr3_2:85250785-85250804 | Msa0432930:intron | 40.0% |
!!! | TTTTTTTTTGCCGATGGCCA+TGG | + | chr3_2:85251021-85251040 | Msa0432930:intron | 40.0% |
AAATCAGAAATGGGTCCTCT+TGG | - | chr3_2:85251097-85251116 | None:intergenic | 40.0% | |
TCTTGAAAAGGGATGTACAG+GGG | - | chr3_2:85251135-85251154 | None:intergenic | 40.0% | |
CTTCTTGAAAAGGGATGTAC+AGG | - | chr3_2:85251137-85251156 | None:intergenic | 40.0% | |
! | GAGGATGGTGACATTTTTCA+TGG | - | chr3_2:85251190-85251209 | None:intergenic | 40.0% |
GAATCATGGGTACCAAATTG+AGG | - | chr3_2:85251209-85251228 | None:intergenic | 40.0% | |
!! | AGGAGGGTATTGAAATTGAG+AGG | + | chr3_2:85251355-85251374 | Msa0432930:intron | 40.0% |
!! | GGAGGGTATTGAAATTGAGA+GGG | + | chr3_2:85251356-85251375 | Msa0432930:intron | 40.0% |
TGAAATTGAGAGGGAGAATG+GGG | + | chr3_2:85251365-85251384 | Msa0432930:intron | 40.0% | |
AATGGAGATGGAACGATGAA+AGG | + | chr3_2:85251392-85251411 | Msa0432930:intron | 40.0% | |
TAACTTGAACAGCCTGTAAC+AGG | + | chr3_2:85251513-85251532 | Msa0432930:intron | 40.0% | |
AACAGCCTGTAACAGGTAAA+AGG | + | chr3_2:85251520-85251539 | Msa0432930:intron | 40.0% | |
!! | GTGTGAAAAGAGAGTGTTAG+AGG | + | chr3_2:85251583-85251602 | Msa0432930:intron | 40.0% |
!!! | ATTTCTGTTTTTGGGGTTGG+GGG | - | chr3_2:85251690-85251709 | None:intergenic | 40.0% |
!!! | CATTTCTGTTTTTGGGGTTG+GGG | - | chr3_2:85251691-85251710 | None:intergenic | 40.0% |
!!! | GCATTTCTGTTTTTGGGGTT+GGG | - | chr3_2:85251692-85251711 | None:intergenic | 40.0% |
!!! | AGCATTTCTGTTTTTGGGGT+TGG | - | chr3_2:85251693-85251712 | None:intergenic | 40.0% |
ACCCCAAAAACAGAAATGCT+TGG | + | chr3_2:85251693-85251712 | Msa0432930:intron | 40.0% | |
AAAATCATTACCTGGCCTAG+TGG | + | chr3_2:85252097-85252116 | Msa0432930:intron | 40.0% | |
ACTTGTTTGAAAGCAGCAAG+GGG | + | chr3_2:85252124-85252143 | Msa0432930:intron | 40.0% | |
GGATCTTAGTATAGACCCAT+GGG | - | chr3_2:85252356-85252375 | None:intergenic | 40.0% | |
GAGGTAACTAAAGGAGAGAT+CGG | + | chr3_2:85252473-85252492 | Msa0432930:intron | 40.0% | |
AAAGGAGAGATCGGAAACTA+AGG | + | chr3_2:85252482-85252501 | Msa0432930:intron | 40.0% | |
!!! | CGGTAGCTATTTTGACGTAT+CGG | + | chr3_2:85252704-85252723 | Msa0432930:intron | 40.0% |
CATTACGATATAGAGACTGG+AGG | - | chr3_2:85252839-85252858 | None:intergenic | 40.0% | |
! | ATACGTTTTGTAACACCCTG+TGG | - | chr3_2:85252880-85252899 | None:intergenic | 40.0% |
! | CAGGGTGTTACAAAACGTAT+TGG | + | chr3_2:85252880-85252899 | Msa0432930:intron | 40.0% |
! | GTTACAAAACGTATTGGCAG+AGG | + | chr3_2:85252886-85252905 | Msa0432930:CDS | 40.0% |
TGAATATGCTCGTGGTATGA+TGG | + | chr3_2:85252936-85252955 | Msa0432930:CDS | 40.0% | |
GAATATGCTCGTGGTATGAT+GGG | + | chr3_2:85252937-85252956 | Msa0432930:CDS | 40.0% | |
TCAAATAGAGTAGAACCTGG+TGG | - | chr3_2:85252964-85252983 | None:intergenic | 40.0% | |
! | GAGCTTGGGTTGTATTACAT+AGG | + | chr3_2:85252985-85253004 | Msa0432930:CDS | 40.0% |
ATACATAACTGACAAGCAGC+AGG | + | chr3_2:85253140-85253159 | Msa0432930:CDS | 40.0% | |
! | GTGCTTAGACTCAACTGTTT+TGG | + | chr3_2:85253591-85253610 | Msa0432930:intron | 40.0% |
CACTCAGGCACATTAAAAGT+AGG | - | chr3_2:85253617-85253636 | None:intergenic | 40.0% | |
!! | CTACTTTTAATGTGCCTGAG+TGG | + | chr3_2:85253615-85253634 | Msa0432930:intron | 40.0% |
GTTTACTCCAACCAGTAGAT+TGG | - | chr3_2:85253793-85253812 | None:intergenic | 40.0% | |
!! | TGTTGGTTTCAGCTCATATC+AGG | - | chr3_2:85253967-85253986 | None:intergenic | 40.0% |
AAGCATGGTACTACACCTAT+AGG | - | chr3_2:85254041-85254060 | None:intergenic | 40.0% | |
!!! | AGTACCATGCTTTTGAAACC+AGG | + | chr3_2:85254049-85254068 | Msa0432930:intron | 40.0% |
TGATTGCTTTGTGGAGAGTT+TGG | + | chr3_2:85254235-85254254 | Msa0432930:CDS | 40.0% | |
GTCTTTGTCTTTCTCAGCTT+CGG | - | chr3_2:85254264-85254283 | None:intergenic | 40.0% | |
GCCGTCACTTAAACTGTTTA+TGG | + | chr3_2:85254316-85254335 | Msa0432930:CDS | 40.0% | |
GCTCTCTGTAAAAAGGAAGA+AGG | - | chr3_2:85254446-85254465 | None:intergenic | 40.0% | |
GTCATAGGCTCTCTGTAAAA+AGG | - | chr3_2:85254453-85254472 | None:intergenic | 40.0% | |
GACCTGCCCAATATATATCT+AGG | - | chr3_2:85254812-85254831 | None:intergenic | 40.0% | |
CCCCTTCATTGCTTACAATT+TGG | - | chr3_2:85254887-85254906 | None:intergenic | 40.0% | |
ATGAACCTTAAGGCTTCGTT+TGG | + | chr3_2:85254917-85254936 | Msa0432930:intron | 40.0% | |
TGAACCTTAAGGCTTCGTTT+GGG | + | chr3_2:85254918-85254937 | Msa0432930:intron | 40.0% | |
! | TTTAGTTCCCCCAAATTTGG+AGG | + | chr3_2:85255072-85255091 | Msa0432930:intron | 40.0% |
TACTTCCTTAGGGTCTGTTT+GGG | - | chr3_2:85255150-85255169 | None:intergenic | 40.0% | |
ATACTTCCTTAGGGTCTGTT+TGG | - | chr3_2:85255151-85255170 | None:intergenic | 40.0% | |
AAACAGACCCTAAGGAAGTA+TGG | + | chr3_2:85255150-85255169 | Msa0432930:intron | 40.0% | |
! | AACAGACCCTAAGGAAGTAT+GGG | + | chr3_2:85255151-85255170 | Msa0432930:intron | 40.0% |
CTCAATTCCCATACTTCCTT+AGG | - | chr3_2:85255161-85255180 | None:intergenic | 40.0% | |
! | CTAAGGAAGTATGGGAATTG+AGG | + | chr3_2:85255159-85255178 | Msa0432930:intron | 40.0% |
GTATGGGAATTGAGGATATC+TGG | + | chr3_2:85255167-85255186 | Msa0432930:intron | 40.0% | |
CTTGTAATGACAAAACGCAC+TGG | - | chr3_2:85255410-85255429 | None:intergenic | 40.0% | |
! | CGTTTTGTCATTACAAGTGC+AGG | + | chr3_2:85255413-85255432 | Msa0432930:CDS | 40.0% |
TGTCATTACAAGTGCAGGAT+TGG | + | chr3_2:85255418-85255437 | Msa0432930:CDS | 40.0% | |
! | ATTACAAGTGCAGGATTGGT+AGG | + | chr3_2:85255422-85255441 | Msa0432930:CDS | 40.0% |
! | GGTGCCATGACAATCATATT+TGG | - | chr3_2:85255503-85255522 | None:intergenic | 40.0% |
! | AGTTTGCTTTCGGTATCCTA+GGG | + | chr3_2:85255583-85255602 | Msa0432930:CDS | 40.0% |
CGTTGGTCAATTACCTCAAT+TGG | - | chr3_2:85255650-85255669 | None:intergenic | 40.0% | |
! | GTATCTCCCCTCTTTAACTT+AGG | + | chr3_2:85255787-85255806 | Msa0432930:intron | 40.0% |
ACCACTCCTAAGTTAAAGAG+GGG | - | chr3_2:85255796-85255815 | None:intergenic | 40.0% | |
CTACCACTCCTAAGTTAAAG+AGG | - | chr3_2:85255798-85255817 | None:intergenic | 40.0% | |
! | GATGTTGCCTTATTGGGATA+TGG | + | chr3_2:85255869-85255888 | Msa0432930:CDS | 40.0% |
TCTTGCAAATCTTGGCATTG+AGG | + | chr3_2:85255928-85255947 | Msa0432930:CDS | 40.0% | |
ACTTCTCGACCGAAGAATTA+AGG | + | chr3_2:85256099-85256118 | Msa0432930:CDS | 40.0% | |
TTGACATATCTTGTGTGCCA+AGG | + | chr3_2:85256204-85256223 | Msa0432930:intron | 40.0% | |
TTCTTGATCAACTCTTCCAG+TGG | + | chr3_2:85256281-85256300 | Msa0432930:intron | 40.0% | |
! | GCTTGGTTAAGCTGTTGATT+TGG | - | chr3_2:85256349-85256368 | None:intergenic | 40.0% |
AATCAACAGCTTAACCAAGC+AGG | + | chr3_2:85256349-85256368 | Msa0432930:CDS | 40.0% | |
ATCAACAGCTTAACCAAGCA+GGG | + | chr3_2:85256350-85256369 | Msa0432930:CDS | 40.0% | |
GCATTCTCAATTTACGAGAC+TGG | - | chr3_2:85256706-85256725 | None:intergenic | 40.0% | |
!! | ATTTTGCTGTGAGGTGATTG+TGG | + | chr3_2:85256785-85256804 | Msa0432930:three_prime_UTR | 40.0% |
!! | TTTTGCTGTGAGGTGATTGT+GGG | + | chr3_2:85256786-85256805 | Msa0432930:three_prime_UTR | 40.0% |
! | TCTCTCTAGCTTCACTCCTT+TGG | + | chr3_2:85248966-85248985 | Msa0432930:five_prime_UTR | 45.0% |
GTTAGGGTTTGGGAATGGAA+AGG | - | chr3_2:85249185-85249204 | None:intergenic | 45.0% | |
CAATCTGCGAGTTAGGGTTT+GGG | - | chr3_2:85249195-85249214 | None:intergenic | 45.0% | |
GCAATCCAATCTGCGAGTTA+GGG | - | chr3_2:85249201-85249220 | None:intergenic | 45.0% | |
AGCAATCCAATCTGCGAGTT+AGG | - | chr3_2:85249202-85249221 | None:intergenic | 45.0% | |
ACTGTGTCAAGAATGGGTGT+TGG | - | chr3_2:85249338-85249357 | None:intergenic | 45.0% | |
CTTGAAGAACCTTTCTCAGC+AGG | + | chr3_2:85249373-85249392 | Msa0432930:CDS | 45.0% | |
GTTTCAACTCCTGCTGAGAA+AGG | - | chr3_2:85249385-85249404 | None:intergenic | 45.0% | |
ACTGAATCCTAGTATGGCTG+TGG | + | chr3_2:85249463-85249482 | Msa0432930:CDS | 45.0% | |
!! | GAATACGATGCATTTGGTGC+AGG | + | chr3_2:85249785-85249804 | Msa0432930:CDS | 45.0% |
GGATGCAACAGTATATCTGC+TGG | + | chr3_2:85249812-85249831 | Msa0432930:CDS | 45.0% | |
TTTCAGGAATGGCAGTTGCA+AGG | + | chr3_2:85250043-85250062 | Msa0432930:intron | 45.0% | |
TTCAGGAATGGCAGTTGCAA+GGG | + | chr3_2:85250044-85250063 | Msa0432930:intron | 45.0% | |
TATGAGGCAATGAGCAATGC+AGG | + | chr3_2:85250135-85250154 | Msa0432930:CDS | 45.0% | |
! | TCGAGCCCTCCTCAATTTTT+GGG | - | chr3_2:85250215-85250234 | None:intergenic | 45.0% |
! | TTCGAGCCCTCCTCAATTTT+TGG | - | chr3_2:85250216-85250235 | None:intergenic | 45.0% |
CTCTATCTAGTACCCTTAGC+AGG | + | chr3_2:85250250-85250269 | Msa0432930:CDS | 45.0% | |
!!! | CGACACTCATTTTGAAACGG+AGG | - | chr3_2:85250770-85250789 | None:intergenic | 45.0% |
!!! | CGACACTCATTTTGAAACGG+AGG | + | chr3_2:85250770-85250789 | Msa0432930:intron | 45.0% |
!! | TTGTTGTTTGTACCGGTTGC+AGG | - | chr3_2:85250940-85250959 | None:intergenic | 45.0% |
TGTTGATGTCTCTAGCACCA+TGG | - | chr3_2:85251041-85251060 | None:intergenic | 45.0% | |
!!! | GGTGCCGTTATTTTTGAAGG+AGG | - | chr3_2:85251071-85251090 | None:intergenic | 45.0% |
AATAACGGCACCATACCAAG+AGG | + | chr3_2:85251079-85251098 | Msa0432930:intron | 45.0% | |
AGAAATGGGTCCTCTTGGTA+TGG | - | chr3_2:85251092-85251111 | None:intergenic | 45.0% | |
AGCACGGCTCTTCTTGAAAA+GGG | - | chr3_2:85251146-85251165 | None:intergenic | 45.0% | |
CATGGGTACCAAATTGAGGA+TGG | - | chr3_2:85251205-85251224 | None:intergenic | 45.0% | |
GAAATTGAGAGGGAGAATGG+GGG | + | chr3_2:85251366-85251385 | Msa0432930:intron | 45.0% | |
AGCTCGTCTTTGTGAGCATT+AGG | + | chr3_2:85251642-85251661 | Msa0432930:intron | 45.0% | |
CATGGACACGATACGAGTAT+CGG | + | chr3_2:85251731-85251750 | Msa0432930:intron | 45.0% | |
ACAAGTTAAACCACTAGGCC+AGG | - | chr3_2:85252110-85252129 | None:intergenic | 45.0% | |
CTTGTTTGAAAGCAGCAAGG+GGG | + | chr3_2:85252125-85252144 | Msa0432930:intron | 45.0% | |
!! | TTAGTTTTCAGCTGTCGCAG+TGG | - | chr3_2:85252278-85252297 | None:intergenic | 45.0% |
CGGATCTTAGTATAGACCCA+TGG | - | chr3_2:85252357-85252376 | None:intergenic | 45.0% | |
GAGAGATCGGAAACTAAGGA+GGG | + | chr3_2:85252486-85252505 | Msa0432930:intron | 45.0% | |
AGAGATCGGAAACTAAGGAG+GGG | + | chr3_2:85252487-85252506 | Msa0432930:intron | 45.0% | |
TTTGATACGTCGTCGATACG+CGG | - | chr3_2:85252589-85252608 | None:intergenic | 45.0% | |
! | GACAGAGTATCAGAGCGTAT+CGG | + | chr3_2:85252665-85252684 | Msa0432930:intron | 45.0% |
! | ATCAGAGCGTATCGGCATAT+CGG | + | chr3_2:85252673-85252692 | Msa0432930:intron | 45.0% |
TCGGCATATCGGATACGATA+CGG | + | chr3_2:85252684-85252703 | Msa0432930:intron | 45.0% | |
! | TTTGACGTATCGGTGCTTCA+TGG | + | chr3_2:85252714-85252733 | Msa0432930:intron | 45.0% |
! | TTGACGTATCGGTGCTTCAT+GGG | + | chr3_2:85252715-85252734 | Msa0432930:intron | 45.0% |
TAGAGACTGGAGGCCAAATA+AGG | - | chr3_2:85252829-85252848 | None:intergenic | 45.0% | |
GTTGTATTACATAGGCCCAG+TGG | + | chr3_2:85252993-85253012 | Msa0432930:CDS | 45.0% | |
TATTACATAGGCCCAGTGGA+TGG | + | chr3_2:85252997-85253016 | Msa0432930:CDS | 45.0% | |
CGATATTGTGTCCATCCACT+GGG | - | chr3_2:85253011-85253030 | None:intergenic | 45.0% | |
TCGATATTGTGTCCATCCAC+TGG | - | chr3_2:85253012-85253031 | None:intergenic | 45.0% | |
ATAACTGACAAGCAGCAGGA+TGG | + | chr3_2:85253144-85253163 | Msa0432930:CDS | 45.0% | |
GTGGTACGGAAAGAAACTCT+AGG | + | chr3_2:85253371-85253390 | Msa0432930:intron | 45.0% | |
TTCAACAAGGGGGGAAATCT+AGG | - | chr3_2:85253654-85253673 | None:intergenic | 45.0% | |
ACAAACCAAGCCCAATCTAC+TGG | + | chr3_2:85253779-85253798 | Msa0432930:intron | 45.0% | |
! | TTGGCTTCTTAGCTTGACTC+TGG | + | chr3_2:85253997-85254016 | Msa0432930:intron | 45.0% |
GACATTGTGGTTGTTCATGC+AGG | + | chr3_2:85254281-85254300 | Msa0432930:CDS | 45.0% | |
!! | GCTTCTGGTTTATCATGTGG+TGG | + | chr3_2:85254398-85254417 | Msa0432930:CDS | 45.0% |
TTTACAGAGAGCCTATGACC+AGG | + | chr3_2:85254454-85254473 | Msa0432930:CDS | 45.0% | |
! | ATCCTATCTTTTGTCAGGGC+AGG | + | chr3_2:85254554-85254573 | Msa0432930:intron | 45.0% |
GGCCTAGATATATATTGGGC+AGG | + | chr3_2:85254807-85254826 | Msa0432930:intron | 45.0% | |
GAACCTTAAGGCTTCGTTTG+GGG | + | chr3_2:85254919-85254938 | Msa0432930:intron | 45.0% | |
AACCTTAAGGCTTCGTTTGG+GGG | + | chr3_2:85254920-85254939 | Msa0432930:intron | 45.0% | |
TTTGAGGGGACAGAAAGAGA+GGG | + | chr3_2:85254968-85254987 | Msa0432930:intron | 45.0% | |
TTTAGGAGGGGATGACTTTG+GGG | - | chr3_2:85255125-85255144 | None:intergenic | 45.0% | |
GTTTAGGAGGGGATGACTTT+GGG | - | chr3_2:85255126-85255145 | None:intergenic | 45.0% | |
AGTTTAGGAGGGGATGACTT+TGG | - | chr3_2:85255127-85255146 | None:intergenic | 45.0% | |
TCTGTTTGGGAGTTTAGGAG+GGG | - | chr3_2:85255137-85255156 | None:intergenic | 45.0% | |
GTCTGTTTGGGAGTTTAGGA+GGG | - | chr3_2:85255138-85255157 | None:intergenic | 45.0% | |
TAGGGTCTGTTTGGGAGTTT+AGG | - | chr3_2:85255142-85255161 | None:intergenic | 45.0% | |
AAACTCCCAAACAGACCCTA+AGG | + | chr3_2:85255142-85255161 | Msa0432930:intron | 45.0% | |
GGAATTGAGGATATCTGGTC+TGG | + | chr3_2:85255172-85255191 | Msa0432930:intron | 45.0% | |
! | ATTTGCGATCTGTGAGTTGG+TGG | + | chr3_2:85255250-85255269 | Msa0432930:intron | 45.0% |
!! | TTTGCGATCTGTGAGTTGGT+GGG | + | chr3_2:85255251-85255270 | Msa0432930:intron | 45.0% |
TGTTCTGCATACAAGTAGGC+AGG | - | chr3_2:85255283-85255302 | None:intergenic | 45.0% | |
ACATGTTACGTGTCATGTCC+AGG | + | chr3_2:85255355-85255374 | Msa0432930:intron | 45.0% | |
ATCAAATGCTCCACACTGGA+GGG | - | chr3_2:85255459-85255478 | None:intergenic | 45.0% | |
TATCAAATGCTCCACACTGG+AGG | - | chr3_2:85255460-85255479 | None:intergenic | 45.0% | |
ACAAGTTCAGCCTCATCAGA+TGG | - | chr3_2:85255524-85255543 | None:intergenic | 45.0% | |
CTAGGATACCGAAAGCAAAC+TGG | - | chr3_2:85255584-85255603 | None:intergenic | 45.0% | |
! | CAGTTTGCTTTCGGTATCCT+AGG | + | chr3_2:85255582-85255601 | Msa0432930:CDS | 45.0% |
GTTTGCTTTCGGTATCCTAG+GGG | + | chr3_2:85255584-85255603 | Msa0432930:CDS | 45.0% | |
! | TCCCCTCTTTAACTTAGGAG+TGG | + | chr3_2:85255792-85255811 | Msa0432930:intron | 45.0% |
TCCAATAGACCCTTCCTCAA+CGG | - | chr3_2:85256038-85256057 | None:intergenic | 45.0% | |
GAAGGGTCTATTGGAGGATT+TGG | + | chr3_2:85256043-85256062 | Msa0432930:CDS | 45.0% | |
GTAAAACAATTGGTCGCCAC+TGG | - | chr3_2:85256300-85256319 | None:intergenic | 45.0% | |
AGGATAGAGCTTCACGAGTA+CGG | - | chr3_2:85256420-85256439 | None:intergenic | 45.0% | |
AAGATGCTTCGTGTCCTTTC+CGG | + | chr3_2:85256463-85256482 | Msa0432930:three_prime_UTR | 45.0% | |
TGGTTCTCTTATGCACATCC+CGG | - | chr3_2:85256485-85256504 | None:intergenic | 45.0% | |
!!! | AAAAAAATAATGTTTTTTTA+AGG | - | chr3_2:85250973-85250992 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTTTAAAGAT+AGG | + | chr3_2:85254710-85254729 | Msa0432930:intron | 5.0% |
TGCGAGTTAGGGTTTGGGAA+TGG | - | chr3_2:85249190-85249209 | None:intergenic | 50.0% | |
CCAATCTGCGAGTTAGGGTT+TGG | - | chr3_2:85249196-85249215 | None:intergenic | 50.0% | |
CCAAACCCTAACTCGCAGAT+TGG | + | chr3_2:85249193-85249212 | Msa0432930:CDS | 50.0% | |
GAATCCTAGTATGGCTGTGG+TGG | + | chr3_2:85249466-85249485 | Msa0432930:CDS | 50.0% | |
!! | GATGCATTTGGTGCAGGTCA+TGG | + | chr3_2:85249791-85249810 | Msa0432930:CDS | 50.0% |
TTGGACAACTATGTCTGGCC+AGG | + | chr3_2:85250110-85250129 | Msa0432930:CDS | 50.0% | |
TATGTCTGGCCAGGTCTATG+AGG | + | chr3_2:85250119-85250138 | Msa0432930:CDS | 50.0% | |
TGCTCATTGCCTCATAGACC+TGG | - | chr3_2:85250131-85250150 | None:intergenic | 50.0% | |
! | ACTGGATTGGAGCCTGCTAA+GGG | - | chr3_2:85250265-85250284 | None:intergenic | 50.0% |
! | TACTGGATTGGAGCCTGCTA+AGG | - | chr3_2:85250266-85250285 | None:intergenic | 50.0% |
CAGCACGGCTCTTCTTGAAA+AGG | - | chr3_2:85251147-85251166 | None:intergenic | 50.0% | |
GAATGGGGGAGAAATGGAGA+TGG | + | chr3_2:85251380-85251399 | Msa0432930:intron | 50.0% | |
GATACGACGCGTATCCGATA+CGG | + | chr3_2:85251753-85251772 | Msa0432930:intron | 50.0% | |
TGAACGACGTATCGCCGTAT+CGG | - | chr3_2:85251770-85251789 | None:intergenic | 50.0% | |
TTTCAGCTGTCGCAGTGGAA+AGG | - | chr3_2:85252273-85252292 | None:intergenic | 50.0% | |
AGAAAACCTAGGGGATGCCA+TGG | + | chr3_2:85252328-85252347 | Msa0432930:intron | 50.0% | |
GGAGAGATCGGAAACTAAGG+AGG | + | chr3_2:85252485-85252504 | Msa0432930:intron | 50.0% | |
AGATGAACCAGCCGTATCAG+TGG | + | chr3_2:85252544-85252563 | Msa0432930:intron | 50.0% | |
GGATTCAATGGGTCCTGTCT+TGG | + | chr3_2:85253068-85253087 | Msa0432930:CDS | 50.0% | |
ACCAAGCCCAATCTACTGGT+TGG | + | chr3_2:85253783-85253802 | Msa0432930:intron | 50.0% | |
TCCAACCAGTAGATTGGGCT+TGG | - | chr3_2:85253787-85253806 | None:intergenic | 50.0% | |
! | GCTTCTTAGCTTGACTCTGG+TGG | + | chr3_2:85254000-85254019 | Msa0432930:intron | 50.0% |
! | GCTGGTCGGCTTCAAACATA+TGG | + | chr3_2:85254212-85254231 | Msa0432930:CDS | 50.0% |
CACGCTGTCACATTTGCTTC+TGG | + | chr3_2:85254383-85254402 | Msa0432930:CDS | 50.0% | |
GACCTGCCCTGACAAAAGAT+AGG | - | chr3_2:85254559-85254578 | None:intergenic | 50.0% | |
AACCCCCAAACGAAGCCTTA+AGG | - | chr3_2:85254925-85254944 | None:intergenic | 50.0% | |
TAAGGCTTCGTTTGGGGGTT+TGG | + | chr3_2:85254925-85254944 | Msa0432930:intron | 50.0% | |
AGGGAATGGCAGGACTTTGA+GGG | + | chr3_2:85254953-85254972 | Msa0432930:intron | 50.0% | |
! | CTTTGAGGGGACAGAAAGAG+AGG | + | chr3_2:85254967-85254986 | Msa0432930:intron | 50.0% |
GGTCTGTTTGGGAGTTTAGG+AGG | - | chr3_2:85255139-85255158 | None:intergenic | 50.0% | |
TGTTACGTGTCATGTCCAGG+TGG | + | chr3_2:85255358-85255377 | Msa0432930:intron | 50.0% | |
GATCAACATCGTGAACCACC+TGG | - | chr3_2:85255376-85255395 | None:intergenic | 50.0% | |
! | GCAGGATTGGTAGGTTCAGA+TGG | + | chr3_2:85255431-85255450 | Msa0432930:CDS | 50.0% |
TCAAATGCTCCACACTGGAG+GGG | - | chr3_2:85255458-85255477 | None:intergenic | 50.0% | |
TGTCATGGCACCATCTGATG+AGG | + | chr3_2:85255511-85255530 | Msa0432930:CDS | 50.0% | |
TGAGGCTGAACTTGTGCACA+TGG | + | chr3_2:85255529-85255548 | Msa0432930:CDS | 50.0% | |
AGCTTCGTCTTTCCCAACCA+AGG | - | chr3_2:85255612-85255631 | None:intergenic | 50.0% | |
AGGTGACTGTTGCTGATGCA+AGG | + | chr3_2:85255948-85255967 | Msa0432930:CDS | 50.0% | |
CTCAGAAGCTCGATGTCAAG+GGG | - | chr3_2:85255983-85256002 | None:intergenic | 50.0% | |
CCTCAGAAGCTCGATGTCAA+GGG | - | chr3_2:85255984-85256003 | None:intergenic | 50.0% | |
ACCGTTGAGGAAGGGTCTAT+TGG | + | chr3_2:85256034-85256053 | Msa0432930:CDS | 50.0% | |
GTTGAGGAAGGGTCTATTGG+AGG | + | chr3_2:85256037-85256056 | Msa0432930:CDS | 50.0% | |
CTTAACCAAGCAGGGTTGAC+TGG | + | chr3_2:85256358-85256377 | Msa0432930:CDS | 50.0% | |
! | TGCCACAGCATTGAGTTTGC+TGG | + | chr3_2:85256393-85256412 | Msa0432930:CDS | 50.0% |
! | GCCACAGCATTGAGTTTGCT+GGG | + | chr3_2:85256394-85256413 | Msa0432930:CDS | 50.0% |
AGATGCTTCGTGTCCTTTCC+GGG | + | chr3_2:85256464-85256483 | Msa0432930:three_prime_UTR | 50.0% | |
CTCTTATGCACATCCCGGAA+AGG | - | chr3_2:85256480-85256499 | None:intergenic | 50.0% | |
AGGTCCACCACAGCCATACT+AGG | - | chr3_2:85249473-85249492 | None:intergenic | 55.0% | |
GTCTCTAGCACCATGGCCAT+CGG | - | chr3_2:85251034-85251053 | None:intergenic | 55.0% | |
GAGGGAGAATGGGGGAGAAA+TGG | + | chr3_2:85251374-85251393 | Msa0432930:intron | 55.0% | |
CGTACAATTGAACGGGCAGC+TGG | + | chr3_2:85251980-85251999 | Msa0432930:intron | 55.0% | |
! | TGAAAGCAGCAAGGGGGTGT+AGG | + | chr3_2:85252131-85252150 | Msa0432930:intron | 55.0% |
! | AGTGTCGAACTCGCGACCAT+TGG | + | chr3_2:85252232-85252251 | Msa0432930:intron | 55.0% |
GTGTCGAACTCGCGACCATT+GGG | + | chr3_2:85252233-85252252 | Msa0432930:intron | 55.0% | |
GTATAGACCCATGGGAGCCA+TGG | - | chr3_2:85252348-85252367 | None:intergenic | 55.0% | |
CCTCGGATACGCCACTGATA+CGG | - | chr3_2:85252558-85252577 | None:intergenic | 55.0% | |
CCTGTGGCAAAGCAGAAGTG+GGG | - | chr3_2:85252864-85252883 | None:intergenic | 55.0% | |
CCCTGTGGCAAAGCAGAAGT+GGG | - | chr3_2:85252865-85252884 | None:intergenic | 55.0% | |
CCCACTTCTGCTTTGCCACA+GGG | + | chr3_2:85252862-85252881 | Msa0432930:intron | 55.0% | |
ACCCTGTGGCAAAGCAGAAG+TGG | - | chr3_2:85252866-85252885 | None:intergenic | 55.0% | |
GACGCATTTGATGCCCACTC+AGG | - | chr3_2:85253632-85253651 | None:intergenic | 55.0% | |
CTTCGTTTGGGGGTTTGGAG+AGG | + | chr3_2:85254930-85254949 | Msa0432930:intron | 55.0% | |
GTTTGGGGGTTTGGAGAGGA+GGG | + | chr3_2:85254934-85254953 | Msa0432930:intron | 55.0% | |
TTTGGAGAGGAGGGAATGGC+AGG | + | chr3_2:85254943-85254962 | Msa0432930:intron | 55.0% | |
GAGGGAATGGCAGGACTTTG+AGG | + | chr3_2:85254952-85254971 | Msa0432930:intron | 55.0% | |
GGGAATGGCAGGACTTTGAG+GGG | + | chr3_2:85254954-85254973 | Msa0432930:intron | 55.0% | |
GGCTGAACTTGTGCACATGG+TGG | + | chr3_2:85255532-85255551 | Msa0432930:CDS | 55.0% | |
!! | TATCCTAGGGGTGCCTTGGT+TGG | + | chr3_2:85255596-85255615 | Msa0432930:CDS | 55.0% |
!! | ATCCTAGGGGTGCCTTGGTT+GGG | + | chr3_2:85255597-85255616 | Msa0432930:CDS | 55.0% |
CCCTTGACATCGAGCTTCTG+AGG | + | chr3_2:85255981-85256000 | Msa0432930:CDS | 55.0% | |
GCCTCAGAAGCTCGATGTCA+AGG | - | chr3_2:85255985-85256004 | None:intergenic | 55.0% | |
GATGTCCAGTCAACCCTGCT+TGG | - | chr3_2:85256366-85256385 | None:intergenic | 55.0% | |
GCCCAGCAAACTCAATGCTG+TGG | - | chr3_2:85256398-85256417 | None:intergenic | 55.0% | |
GGATACGCCACTGATACGGC+TGG | - | chr3_2:85252554-85252573 | None:intergenic | 60.0% | |
CCGTATCAGTGGCGTATCCG+AGG | + | chr3_2:85252555-85252574 | Msa0432930:intron | 60.0% | |
GTGGCGTATCCGAGGCATGT+CGG | + | chr3_2:85252563-85252582 | Msa0432930:intron | 60.0% | |
CCCCACTTCTGCTTTGCCAC+AGG | + | chr3_2:85252861-85252880 | Msa0432930:intron | 60.0% | |
!! | CGTGGTATGATGGGTCCACC+AGG | + | chr3_2:85252946-85252965 | Msa0432930:CDS | 60.0% |
CGTTTGGGGGTTTGGAGAGG+AGG | + | chr3_2:85254933-85254952 | Msa0432930:intron | 60.0% | |
GGGGTTTGGAGAGGAGGGAA+TGG | + | chr3_2:85254939-85254958 | Msa0432930:intron | 60.0% | |
TCAGATGGTCCCCTCCAGTG+TGG | + | chr3_2:85255446-85255465 | Msa0432930:CDS | 60.0% | |
!! | TCGGTATCCTAGGGGTGCCT+TGG | + | chr3_2:85255592-85255611 | Msa0432930:CDS | 60.0% |
! | TTCCCAACCAAGGCACCCCT+AGG | - | chr3_2:85255602-85255621 | None:intergenic | 60.0% |
TGGGAGCCATGGCATCCCCT+AGG | - | chr3_2:85252337-85252356 | None:intergenic | 65.0% | |
AGGGGATGCCATGGCTCCCA+TGG | + | chr3_2:85252337-85252356 | Msa0432930:intron | 65.0% | |
GGGGATGCCATGGCTCCCAT+GGG | + | chr3_2:85252338-85252357 | Msa0432930:intron | 65.0% | |
GATACGCGGCCGACATGCCT+CGG | - | chr3_2:85252575-85252594 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 85248945 | 85256896 | 85248945 | ID=Msa0432930;Name=Msa0432930 |
chr3_2 | mRNA | 85248945 | 85256896 | 85248945 | ID=Msa0432930-mRNA-1;Parent=Msa0432930;Name=Msa0432930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=198|1|1|1|1|1|8|443|709 |
chr3_2 | exon | 85248945 | 85249559 | 85248945 | ID=Msa0432930-mRNA-1:exon:24283;Parent=Msa0432930-mRNA-1 |
chr3_2 | exon | 85249689 | 85249839 | 85249689 | ID=Msa0432930-mRNA-1:exon:24284;Parent=Msa0432930-mRNA-1 |
chr3_2 | exon | 85250049 | 85250317 | 85250049 | ID=Msa0432930-mRNA-1:exon:24285;Parent=Msa0432930-mRNA-1 |
chr3_2 | exon | 85252883 | 85253165 | 85252883 | ID=Msa0432930-mRNA-1:exon:24286;Parent=Msa0432930-mRNA-1 |
chr3_2 | exon | 85254183 | 85254475 | 85254183 | ID=Msa0432930-mRNA-1:exon:24287;Parent=Msa0432930-mRNA-1 |
chr3_2 | exon | 85255377 | 85255655 | 85255377 | ID=Msa0432930-mRNA-1:exon:24288;Parent=Msa0432930-mRNA-1 |
chr3_2 | exon | 85255836 | 85256120 | 85255836 | ID=Msa0432930-mRNA-1:exon:24289;Parent=Msa0432930-mRNA-1 |
chr3_2 | exon | 85256301 | 85256896 | 85256301 | ID=Msa0432930-mRNA-1:exon:24290;Parent=Msa0432930-mRNA-1 |
chr3_2 | five_prime_UTR | 85248945 | 85249142 | 85248945 | ID=Msa0432930-mRNA-1:five_prime_utr;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85249143 | 85249559 | 85249143 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85249689 | 85249839 | 85249689 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85250049 | 85250317 | 85250049 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85252883 | 85253165 | 85252883 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85254183 | 85254475 | 85254183 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85255377 | 85255655 | 85255377 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85255836 | 85256120 | 85255836 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | CDS | 85256301 | 85256453 | 85256301 | ID=Msa0432930-mRNA-1:cds;Parent=Msa0432930-mRNA-1 |
chr3_2 | three_prime_UTR | 85256454 | 85256896 | 85256454 | ID=Msa0432930-mRNA-1:three_prime_utr;Parent=Msa0432930-mRNA-1 |
Gene Sequence |
Protein sequence |