AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165520 MtrunA17_Chr7g0269871 92.105 76 6 0 1 76 62 137 1.15e-41 146
Msa1165520 MtrunA17_Chr1g0194841 80.263 76 15 0 1 76 57 132 8.21e-36 130
Msa1165520 MtrunA17_Chr2g0294751 72.368 76 21 0 1 76 61 136 7.34e-31 116
Msa1165520 MtrunA17_Chr1g0207281 61.111 72 28 0 1 72 74 145 3.73e-24 97.1
Msa1165520 MtrunA17_Chr4g0050591 62.500 72 27 0 1 72 74 145 5.21e-24 96.7
Msa1165520 MtrunA17_Chr2g0278761 64.789 71 25 0 1 71 75 145 6.70e-24 96.3
Msa1165520 MtrunA17_Chr5g0425471 56.000 75 33 0 1 75 70 144 2.89e-23 94.4
Msa1165520 MtrunA17_Chr3g0115601 57.333 75 32 0 1 75 64 138 8.72e-23 93.2
Msa1165520 MtrunA17_Chr5g0425431 54.667 75 34 0 1 75 68 142 8.16e-22 90.5
Msa1165520 MtrunA17_Chr5g0425451 57.333 75 32 0 1 75 70 144 9.18e-22 90.1
Msa1165520 MtrunA17_Chr5g0425531 46.078 102 39 2 1 86 70 171 2.42e-20 86.3
Msa1165520 MtrunA17_Chr5g0411571 50.667 75 37 0 1 75 62 136 4.49e-20 85.5
Msa1165520 MtrunA17_Chr8g0368761 65.854 41 14 0 75 115 608 648 1.76e-11 60.8
Msa1165520 MtrunA17_Chr1g0179081 63.415 41 15 0 75 115 596 636 5.72e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165520 AT1G02640.1 76.389 72 17 0 1 72 64 135 1.08e-32 121
Msa1165520 AT5G49360.1 73.684 76 20 0 1 76 69 144 1.63e-32 121
Msa1165520 AT5G64570.1 63.889 72 26 0 1 72 79 150 5.38e-25 99.8
Msa1165520 AT5G64570.3 63.889 72 26 0 1 72 79 150 5.46e-25 99.8
Msa1165520 AT3G19620.1 63.889 72 26 0 1 72 61 132 1.07e-24 99.0
Msa1165520 AT5G09730.1 63.889 72 26 0 1 72 69 140 1.67e-24 98.6
Msa1165520 AT1G78060.1 56.944 72 31 0 1 72 58 129 4.44e-22 91.7
Msa1165520 AT5G10560.1 54.930 71 32 0 1 71 62 132 2.52e-20 86.7

Find 43 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTTGGTGGTTTGTTTCC+TGG 0.264252 7_4:+57482912 Msa1165520:CDS
GCCTGTAGAGGACAACTCTT+AGG 0.312720 7_4:+57485388 Msa1165520:intron
GCTTCTTTGTGGGAGGCTAT+TGG 0.324022 7_4:+57482981 Msa1165520:CDS
AATAATGCTCCGGCGGTTCC+TGG 0.341172 7_4:+57482819 Msa1165520:CDS
GGCAAACAAATTCATAAGAT+TGG 0.384625 7_4:+57484744 Msa1165520:CDS
CCGGGGTGGGACAAACAAAC+TGG 0.410782 7_4:-57485424 None:intergenic
GTGGGACCTGGTACTAGATT+TGG 0.418956 7_4:+57482897 Msa1165520:CDS
GTAGCAGACGTGGAGGAATC+TGG 0.429247 7_4:+57484807 Msa1165520:CDS
CCCTAAGAGTTGTCCTCTAC+AGG 0.431074 7_4:-57485389 None:intergenic
TGGTGGTCGGAGGCACTTCA+TGG 0.462301 7_4:+57482864 Msa1165520:CDS
CGGTTGCTTTAAACCGACTC+CGG 0.476303 7_4:-57485443 None:intergenic
AATATTGCATGCTTTGTAGC+TGG 0.484095 7_4:+57484723 Msa1165520:CDS
TGTTTGTCCCACCCCGGAGT+CGG 0.489285 7_4:+57485430 Msa1165520:CDS
AAACAAATTCATAAGATTGG+AGG 0.491683 7_4:+57484747 Msa1165520:CDS
GGTTGCTTTAAACCGACTCC+GGG 0.492322 7_4:-57485442 None:intergenic
GGACCTGGTACTAGATTTGG+TGG 0.516599 7_4:+57482900 Msa1165520:CDS
CCAGTTTGTTTGTCCCACCC+CGG 0.527349 7_4:+57485424 Msa1165520:CDS
CTTTGTGGGAGGCTATTGGA+CGG 0.533160 7_4:+57482985 Msa1165520:CDS
CCTGTAGAGGACAACTCTTA+GGG 0.537100 7_4:+57485389 Msa1165520:CDS
GCTCCGGCGGTTCCTGGAGT+CGG 0.543134 7_4:+57482825 Msa1165520:CDS
CTTTAAACCGACTCCGGGGT+GGG 0.547172 7_4:-57485437 None:intergenic
TTTGTGGGAGGCTATTGGAC+GGG 0.548197 7_4:+57482986 Msa1165520:CDS
GCTTTAAACCGACTCCGGGG+TGG 0.559196 7_4:-57485438 None:intergenic
TCTGTTAGTGAATAATGCTC+CGG 0.566762 7_4:+57482809 Msa1165520:CDS
TTTAAAGCAACCGAGAGCTT+AGG 0.568948 7_4:+57485453 Msa1165520:CDS
ATTCCGACTCCAGGAACCGC+CGG 0.570979 7_4:-57482828 None:intergenic
GGTGTTTCAAACGTGGGACC+TGG 0.594704 7_4:+57482885 Msa1165520:CDS
CTTCATGGTGTTTCAAACGT+GGG 0.603309 7_4:+57482879 Msa1165520:CDS
GCAGCGGTTGTGATAACTTG+AGG 0.604040 7_4:-57482948 None:intergenic
GCTACTTCAACGACTACAGA+AGG 0.610128 7_4:-57484789 None:intergenic
ACTTCATGGTGTTTCAAACG+TGG 0.625609 7_4:+57482878 Msa1165520:CDS
AAACCACCAAATCTAGTACC+AGG 0.637932 7_4:-57482903 None:intergenic
AAGCTATGAGTGGTGGTCGG+AGG 0.643933 7_4:+57482854 Msa1165520:CDS
TGAGGAAAACTAGTAGCACC+AGG 0.644313 7_4:-57482930 None:intergenic
AGAAGCATTAAAAGAAGCAG+CGG 0.655929 7_4:-57482964 None:intergenic
GAATGAAAAGCTATGAGTGG+TGG 0.659564 7_4:+57482847 Msa1165520:CDS
GAAAAGCTATGAGTGGTGGT+CGG 0.659624 7_4:+57482851 Msa1165520:CDS
TGTACATGAATAGCCTGTAG+AGG 0.665102 7_4:+57485376 Msa1165520:intron
AGTCGTTGAAGTAGCAGACG+TGG 0.666126 7_4:+57484797 Msa1165520:CDS
GTTAGTGAATAATGCTCCGG+CGG 0.666592 7_4:+57482812 Msa1165520:CDS
TCGGAATGAAAAGCTATGAG+TGG 0.676044 7_4:+57482844 Msa1165520:CDS
CGTTGAAGTAGCAGACGTGG+AGG 0.685057 7_4:+57484800 Msa1165520:CDS
GTTGCTTTAAACCGACTCCG+GGG 0.705236 7_4:-57485441 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGTTATTGATTTTATA+CGG + chr7_4:57483206-57483225 Msa1165520:intron 10.0%
!! GTAATAAAATTGATTATAAT+AGG + chr7_4:57483771-57483790 Msa1165520:intron 10.0%
!!! TTTTTTGATAGAATTTTTTT+AGG + chr7_4:57483932-57483951 Msa1165520:intron 10.0%
!!! TTTTTGATAGAATTTTTTTA+GGG + chr7_4:57483933-57483952 Msa1165520:intron 10.0%
!!! ATTGATTCAAAAATAAAAAA+GGG - chr7_4:57484215-57484234 None:intergenic 10.0%
!!! TATTGATTCAAAAATAAAAA+AGG - chr7_4:57484216-57484235 None:intergenic 10.0%
!!! TAATCTAGAAATATTTTAAT+TGG + chr7_4:57484287-57484306 Msa1165520:intron 10.0%
!! AATAAAATAAAAAAAACAGA+AGG - chr7_4:57484843-57484862 None:intergenic 10.0%
!! AAGTAATTAAAAAAAATGAA+AGG + chr7_4:57485189-57485208 Msa1165520:intron 10.0%
!! ATAATAATAAAATGAATAGA+AGG + chr7_4:57485214-57485233 Msa1165520:intron 10.0%
!!! AATTGCAAAATCAATATTTT+TGG + chr7_4:57483113-57483132 Msa1165520:intron 15.0%
!! GTCTATAAAAAAATATATGT+TGG + chr7_4:57483265-57483284 Msa1165520:intron 15.0%
!! TCAAATTATTAGTACATAAT+GGG - chr7_4:57484049-57484068 None:intergenic 15.0%
!! ATCAAATTATTAGTACATAA+TGG - chr7_4:57484050-57484069 None:intergenic 15.0%
!!! AAAATATTTCTAGATTAATC+CGG - chr7_4:57484284-57484303 None:intergenic 15.0%
!! AGAAAAAAAAAATTGAATGA+GGG - chr7_4:57484503-57484522 None:intergenic 15.0%
!! AAGAAAAAAAAAATTGAATG+AGG - chr7_4:57484504-57484523 None:intergenic 15.0%
!! AAGTAATTTGAAAAAATGAA+AGG - chr7_4:57484875-57484894 None:intergenic 15.0%
!!! AAGATTCTTAAATAGACTTT+TGG - chr7_4:57483699-57483718 None:intergenic 20.0%
!!! AATCATATCCTATTTTCAAA+TGG - chr7_4:57483803-57483822 None:intergenic 20.0%
!! ATTTGAAAATAGGATATGAT+TGG + chr7_4:57483802-57483821 Msa1165520:intron 20.0%
!!! ATGTTAATCTACTTTGAAAA+CGG - chr7_4:57484158-57484177 None:intergenic 20.0%
!! ATTCAAAAATAAAAAAGGGT+GGG - chr7_4:57484211-57484230 None:intergenic 20.0%
!! CATTAACATTTATCAATCAT+AGG - chr7_4:57484255-57484274 None:intergenic 20.0%
!! TTCTTTTAATGCTTCTTTGT+GGG + chr7_4:57482971-57482990 Msa1165520:CDS 25.0%
! TGTAGAAAATTAGCATAATG+TGG + chr7_4:57483314-57483333 Msa1165520:intron 25.0%
!!! TATTTAAAACTTGTTGCAGA+AGG - chr7_4:57483496-57483515 None:intergenic 25.0%
!!! ACAAGTTTTAAATAGAACTC+TGG + chr7_4:57483502-57483521 Msa1165520:intron 25.0%
!! TTCATCTTGAAATAACGTTT+TGG + chr7_4:57483535-57483554 Msa1165520:intron 25.0%
! ATATCCTTTCAATCTTTGAA+AGG + chr7_4:57483576-57483595 Msa1165520:intron 25.0%
!! ATCTTTGAAAGGTTTGATAT+TGG + chr7_4:57483587-57483606 Msa1165520:intron 25.0%
! ATCCAGTCTTCATAAAAAAT+GGG - chr7_4:57483729-57483748 None:intergenic 25.0%
! TATCCAGTCTTCATAAAAAA+TGG - chr7_4:57483730-57483749 None:intergenic 25.0%
!!! TTTTTTATGAAGACTGGATA+TGG + chr7_4:57483730-57483749 Msa1165520:intron 25.0%
! GGAAATAACCATTTGAAAAT+AGG + chr7_4:57483792-57483811 Msa1165520:intron 25.0%
! TGACAAATTGAAGATTTGAT+TGG + chr7_4:57483831-57483850 Msa1165520:intron 25.0%
!!! GATAGAATTTTTTTAGAGTG+AGG + chr7_4:57484067-57484086 Msa1165520:intron 25.0%
!! GTTTTCAAAGTAGATTAACA+TGG + chr7_4:57484157-57484176 Msa1165520:intron 25.0%
! GATTCAAAAATAAAAAAGGG+TGG - chr7_4:57484212-57484231 None:intergenic 25.0%
! ATAAATGTTAATGATCAAGC+CGG + chr7_4:57484262-57484281 Msa1165520:intron 25.0%
! TCGAAATAAACTACTTTCAT+TGG + chr7_4:57484417-57484436 Msa1165520:intron 25.0%
! AAATAAACTACTTTCATTGG+AGG + chr7_4:57484420-57484439 Msa1165520:intron 25.0%
! AATAAACTACTTTCATTGGA+GGG + chr7_4:57484421-57484440 Msa1165520:intron 25.0%
! GCAAAAGAAAACATATCATA+AGG - chr7_4:57484539-57484558 None:intergenic 25.0%
! AAACAAATTCATAAGATTGG+AGG + chr7_4:57484747-57484766 Msa1165520:CDS 25.0%
! TCATTCATAGAAGTAGTATA+CGG - chr7_4:57484915-57484934 None:intergenic 25.0%
! AATTCAAATGGTACATACAT+TGG - chr7_4:57484994-57485013 None:intergenic 25.0%
! AATGTATGTACCATTTGAAT+TGG + chr7_4:57484993-57485012 Msa1165520:intron 25.0%
! ATATCAAACGAAATCTTACA+GGG - chr7_4:57485121-57485140 None:intergenic 25.0%
! CTTCTTTTAATGCTTCTTTG+TGG + chr7_4:57482970-57482989 Msa1165520:CDS 30.0%
CAAACCTTTCAAAGATTGAA+AGG - chr7_4:57483583-57483602 None:intergenic 30.0%
!!! TACCCATTTTTTATGAAGAC+TGG + chr7_4:57483724-57483743 Msa1165520:intron 30.0%
ATGGAAGGAAAAGAAAGAAA+AGG + chr7_4:57483749-57483768 Msa1165520:intron 30.0%
!!! TAGAATTTTTTTAGGGTGAG+AGG + chr7_4:57483940-57483959 Msa1165520:intron 30.0%
! TAGTACATAATGGGAAAACT+GGG - chr7_4:57484040-57484059 None:intergenic 30.0%
! TTAGTACATAATGGGAAAAC+TGG - chr7_4:57484041-57484060 None:intergenic 30.0%
TAGTGCCTTAGTCTAAATTA+AGG + chr7_4:57484093-57484112 Msa1165520:intron 30.0%
TCTAAATTAAGGAACGCTTT+AGG + chr7_4:57484104-57484123 Msa1165520:intron 30.0%
! ATTGGCGTTACAACTATTTT+CGG + chr7_4:57484305-57484324 Msa1165520:intron 30.0%
TATTGTAGATGTTGGAAGTT+GGG - chr7_4:57484342-57484361 None:intergenic 30.0%
TCTTTCAGTCTATCCAATAT+TGG - chr7_4:57484373-57484392 None:intergenic 30.0%
ATAGACTGAAAGAAGTTTCT+TGG + chr7_4:57484380-57484399 Msa1165520:intron 30.0%
AGTAGTTTATTTCGATGATG+AGG - chr7_4:57484412-57484431 None:intergenic 30.0%
CCGAAGAGTTTAGAAAAAAT+GGG - chr7_4:57484606-57484625 None:intergenic 30.0%
!!! CCCATTTTTTCTAAACTCTT+CGG + chr7_4:57484603-57484622 Msa1165520:intron 30.0%
ACCGAAGAGTTTAGAAAAAA+TGG - chr7_4:57484607-57484626 None:intergenic 30.0%
GGCAAACAAATTCATAAGAT+TGG + chr7_4:57484744-57484763 Msa1165520:CDS 30.0%
GACATCAAACTGTATCTTAT+CGG + chr7_4:57484939-57484958 Msa1165520:intron 30.0%
ACATCAAACTGTATCTTATC+GGG + chr7_4:57484940-57484959 Msa1165520:intron 30.0%
TACAAGCTTGATCCAAAAAT+TGG + chr7_4:57485067-57485086 Msa1165520:intron 30.0%
! CCAAGTTATGTACCAATTTT+TGG - chr7_4:57485082-57485101 None:intergenic 30.0%
CCAAAAATTGGTACATAACT+TGG + chr7_4:57485079-57485098 Msa1165520:intron 30.0%
GATATCAAACGAAATCTTAC+AGG - chr7_4:57485122-57485141 None:intergenic 30.0%
TGCAAACAACTTCATAAGAT+TGG - chr7_4:57485313-57485332 None:intergenic 30.0%
TCTGTTAGTGAATAATGCTC+CGG + chr7_4:57482809-57482828 Msa1165520:CDS 35.0%
!! AGAAGCATTAAAAGAAGCAG+CGG - chr7_4:57482967-57482986 None:intergenic 35.0%
! TTTTAATGCTTCTTTGTGGG+AGG + chr7_4:57482974-57482993 Msa1165520:CDS 35.0%
TGCAAAGAAGAACAATGACA+AGG - chr7_4:57483636-57483655 None:intergenic 35.0%
TTATGAAGACTGGATATGGA+AGG + chr7_4:57483734-57483753 Msa1165520:intron 35.0%
GCGTTCCTTAATTTAGACTA+AGG - chr7_4:57484101-57484120 None:intergenic 35.0%
! TTGGCGTTACAACTATTTTC+GGG + chr7_4:57484306-57484325 Msa1165520:intron 35.0%
GTATTGTAGATGTTGGAAGT+TGG - chr7_4:57484343-57484362 None:intergenic 35.0%
TTCAGTCTATCCAATATTGG+AGG - chr7_4:57484370-57484389 None:intergenic 35.0%
AGCATAACTATTGTGCAGAT+TGG + chr7_4:57484463-57484482 Msa1165520:intron 35.0%
CAAATATGTTTGTCACACCT+CGG - chr7_4:57484637-57484656 None:intergenic 35.0%
TTCTCCATAAGCTATGTACA+GGG + chr7_4:57484681-57484700 Msa1165520:intron 35.0%
AATATTGCATGCTTTGTAGC+TGG + chr7_4:57484723-57484742 Msa1165520:CDS 35.0%
! GTTGTTTGTTGCTCATCATA+TGG - chr7_4:57484972-57484991 None:intergenic 35.0%
ACACGATTCACCAATTCAAA+TGG - chr7_4:57485006-57485025 None:intergenic 35.0%
TGAATCGTGTATCAAACAAC+AGG + chr7_4:57485016-57485035 Msa1165520:intron 35.0%
AATCTTACAGGGAATGAATG+AGG - chr7_4:57485110-57485129 None:intergenic 35.0%
TCGGAATGAAAAGCTATGAG+TGG + chr7_4:57482844-57482863 Msa1165520:CDS 40.0%
GAATGAAAAGCTATGAGTGG+TGG + chr7_4:57482847-57482866 Msa1165520:CDS 40.0%
ACTTCATGGTGTTTCAAACG+TGG + chr7_4:57482878-57482897 Msa1165520:CDS 40.0%
CTTCATGGTGTTTCAAACGT+GGG + chr7_4:57482879-57482898 Msa1165520:CDS 40.0%
AAACCACCAAATCTAGTACC+AGG - chr7_4:57482906-57482925 None:intergenic 40.0%
!! AGATTTGGTGGTTTGTTTCC+TGG + chr7_4:57482912-57482931 Msa1165520:CDS 40.0%
TCTATAAAGACGAACCACCA+AGG - chr7_4:57483666-57483685 None:intergenic 40.0%
GGGATGTGATTGAAGACAAA+TGG - chr7_4:57484020-57484039 None:intergenic 40.0%
AGGAGTCGTATTGTAGATGT+TGG - chr7_4:57484350-57484369 None:intergenic 40.0%
CAATACGACTCCTCCAATAT+TGG + chr7_4:57484357-57484376 Msa1165520:intron 40.0%
GCTTATGGAGAACAACTGTT+AGG - chr7_4:57484673-57484692 None:intergenic 40.0%
GTTCTCCATAAGCTATGTAC+AGG + chr7_4:57484680-57484699 Msa1165520:intron 40.0%
CCATTCATAGACGTAGTAGA+CGG + chr7_4:57485146-57485165 Msa1165520:intron 40.0%
GCTTCTTCAACGACTATAGA+AGG + chr7_4:57485265-57485284 Msa1165520:intron 40.0%
CTACAGGCTATTCATGTACA+GGG - chr7_4:57485376-57485395 None:intergenic 40.0%
TCTACAGGCTATTCATGTAC+AGG - chr7_4:57485377-57485396 None:intergenic 40.0%
TGTACATGAATAGCCTGTAG+AGG + chr7_4:57485376-57485395 Msa1165520:intron 40.0%
GTTAGTGAATAATGCTCCGG+CGG + chr7_4:57482812-57482831 Msa1165520:CDS 45.0%
! TAGCTTTTCATTCCGACTCC+AGG - chr7_4:57482840-57482859 None:intergenic 45.0%
GAAAAGCTATGAGTGGTGGT+CGG + chr7_4:57482851-57482870 Msa1165520:CDS 45.0%
TGAGGAAAACTAGTAGCACC+AGG - chr7_4:57482933-57482952 None:intergenic 45.0%
!!! CATTGGAGGGTTTTGAGCAA+AGG + chr7_4:57484434-57484453 Msa1165520:intron 45.0%
GCTACTTCAACGACTACAGA+AGG - chr7_4:57484792-57484811 None:intergenic 45.0%
CCGTCTACTACGTCTATGAA+TGG - chr7_4:57485149-57485168 None:intergenic 45.0%
CCTGTAGAGGACAACTCTTA+GGG + chr7_4:57485389-57485408 Msa1165520:CDS 45.0%
GTGGGACCTGGTACTAGATT+TGG + chr7_4:57482897-57482916 Msa1165520:CDS 50.0%
GGACCTGGTACTAGATTTGG+TGG + chr7_4:57482900-57482919 Msa1165520:CDS 50.0%
GCAGCGGTTGTGATAACTTG+AGG - chr7_4:57482951-57482970 None:intergenic 50.0%
GCTTCTTTGTGGGAGGCTAT+TGG + chr7_4:57482981-57483000 Msa1165520:CDS 50.0%
CTTTGTGGGAGGCTATTGGA+CGG + chr7_4:57482985-57483004 Msa1165520:CDS 50.0%
TTTGTGGGAGGCTATTGGAC+GGG + chr7_4:57482986-57483005 Msa1165520:CDS 50.0%
CTTCTTTGCAGCGTGATCCT+TGG + chr7_4:57483646-57483665 Msa1165520:intron 50.0%
GTCGCCCTGTACATAGCTTA+TGG - chr7_4:57484688-57484707 None:intergenic 50.0%
AGTCGTTGAAGTAGCAGACG+TGG + chr7_4:57484797-57484816 Msa1165520:CDS 50.0%
GAAGCAGACGTGGAGGAATT+TGG - chr7_4:57485250-57485269 None:intergenic 50.0%
AGTCGTTGAAGAAGCAGACG+TGG - chr7_4:57485260-57485279 None:intergenic 50.0%
GCCTGTAGAGGACAACTCTT+AGG + chr7_4:57485388-57485407 Msa1165520:intron 50.0%
CCCTAAGAGTTGTCCTCTAC+AGG - chr7_4:57485392-57485411 None:intergenic 50.0%
! GTTGCTTTAAACCGACTCCG+GGG - chr7_4:57485444-57485463 None:intergenic 50.0%
! GGTTGCTTTAAACCGACTCC+GGG - chr7_4:57485445-57485464 None:intergenic 50.0%
! CGGTTGCTTTAAACCGACTC+CGG - chr7_4:57485446-57485465 None:intergenic 50.0%
AATAATGCTCCGGCGGTTCC+TGG + chr7_4:57482819-57482838 Msa1165520:CDS 55.0%
AAGCTATGAGTGGTGGTCGG+AGG + chr7_4:57482854-57482873 Msa1165520:CDS 55.0%
GGTGTTTCAAACGTGGGACC+TGG + chr7_4:57482885-57482904 Msa1165520:CDS 55.0%
CTTTGCAGCGTGATCCTTGG+TGG + chr7_4:57483649-57483668 Msa1165520:intron 55.0%
!! ACTCTTCGGTACTGACTCCG+AGG + chr7_4:57484617-57484636 Msa1165520:intron 55.0%
CGTTGAAGTAGCAGACGTGG+AGG + chr7_4:57484800-57484819 Msa1165520:CDS 55.0%
GTAGCAGACGTGGAGGAATC+TGG + chr7_4:57484807-57484826 Msa1165520:CDS 55.0%
CGTTGAAGAAGCAGACGTGG+AGG - chr7_4:57485257-57485276 None:intergenic 55.0%
! CCAGTTTGTTTGTCCCACCC+CGG + chr7_4:57485424-57485443 Msa1165520:CDS 55.0%
! CTTTAAACCGACTCCGGGGT+GGG - chr7_4:57485440-57485459 None:intergenic 55.0%
ATTCCGACTCCAGGAACCGC+CGG - chr7_4:57482831-57482850 None:intergenic 60.0%
!! TGGTGGTCGGAGGCACTTCA+TGG + chr7_4:57482864-57482883 Msa1165520:CDS 60.0%
CCGGGGTGGGACAAACAAAC+TGG - chr7_4:57485427-57485446 None:intergenic 60.0%
TGTTTGTCCCACCCCGGAGT+CGG + chr7_4:57485430-57485449 Msa1165520:CDS 60.0%
! GCTTTAAACCGACTCCGGGG+TGG - chr7_4:57485441-57485460 None:intergenic 60.0%
GCTCCGGCGGTTCCTGGAGT+CGG + chr7_4:57482825-57482844 Msa1165520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57482792 57485474 57482792 ID=Msa1165520;Name=Msa1165520
chr7_4 mRNA 57482792 57485474 57482792 ID=Msa1165520-mRNA-1;Parent=Msa1165520;Name=Msa1165520-mRNA-1;_AED=0.70;_eAED=1.00;_QI=0|0|0|0.5|0.33|0.75|4|0|144
chr7_4 exon 57482792 57483007 57482792 ID=Msa1165520-mRNA-1:exon:17437;Parent=Msa1165520-mRNA-1
chr7_4 exon 57484083 57484088 57484083 ID=Msa1165520-mRNA-1:exon:17438;Parent=Msa1165520-mRNA-1
chr7_4 exon 57484702 57484828 57484702 ID=Msa1165520-mRNA-1:exon:17439;Parent=Msa1165520-mRNA-1
chr7_4 exon 57485389 57485474 57485389 ID=Msa1165520-mRNA-1:exon:17440;Parent=Msa1165520-mRNA-1
chr7_4 CDS 57482792 57483007 57482792 ID=Msa1165520-mRNA-1:cds;Parent=Msa1165520-mRNA-1
chr7_4 CDS 57484083 57484088 57484083 ID=Msa1165520-mRNA-1:cds;Parent=Msa1165520-mRNA-1
chr7_4 CDS 57484702 57484828 57484702 ID=Msa1165520-mRNA-1:cds;Parent=Msa1165520-mRNA-1
chr7_4 CDS 57485389 57485474 57485389 ID=Msa1165520-mRNA-1:cds;Parent=Msa1165520-mRNA-1
Gene Sequence

>Msa1165520

ATGCAAGAGAAAGTTAATCTGTTAGTGAATAATGCTCCGGCGGTTCCTGGAGTCGGAATGAAAAGCTATGAGTGGTGGTCGGAGGCACTTCATGGTGTTTCAAACGTGGGACCTGGTACTAGATTTGGTGGTTTGTTTCCTGGTGCTACTAGTTTTCCTCAAGTTATCACAACCGCTGCTTCTTTTAATGCTTCTTTGTGGGAGGCTATTGGACGGAGTGAGGGCGACACAAAGTTCTTAAAGAATATTGCATGCTTTGTAGCTGGCAAACAAATTCATAAGATTGGAGGTTTGAGAGATAATCTCGTTCCTTCTGTAGTCGTTGAAGTAGCAGACGTGGAGGAATCTGCCTGTAGAGGACAACTCTTAGGGAGATACAATGTTCCAGTTTGTTTGTCCCACCCCGGAGTCGGTTTAAAGCAACCGAGAGCTTAG

Protein sequence

>Msa1165520

MQEKVNLLVNNAPAVPGVGMKSYEWWSEALHGVSNVGPGTRFGGLFPGATSFPQVITTAASFNASLWEAIGRSEGDTKFLKNIACFVAGKQIHKIGGLRDNLVPSVVVEVADVEESACRGQLLGRYNVPVCLSHPGVGLKQPRA*