AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231060 MtrunA17_Chr2g0277351 92.470 332 10 2 1 317 1 332 0.0 616
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231060 AT4G06676.1 60.645 310 104 3 13 307 10 316 1.19e-127 367
Msa0231060 AT4G06676.2 61.204 299 98 3 13 296 10 305 4.59e-125 360

Find 89 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATAGATTATGCTTAATTT+TGG 0.199228 2_2:+3270423 Msa0231060:three_prime_UTR
TCTCTCCTCTTGTGAGTTAT+GGG 0.222121 2_2:+3268640 Msa0231060:CDS
TTCTCTCCTCTTGTGAGTTA+TGG 0.223399 2_2:+3268639 Msa0231060:CDS
CAGTTTGTTCTAACTGCAAC+TGG 0.237576 2_2:+3269024 Msa0231060:intron
TACAATGACATTGCCAAGTA+TGG 0.237590 2_2:+3267458 Msa0231060:CDS
ACTATGCTAAACACATATAA+TGG 0.247054 2_2:-3266320 None:intergenic
TCTTGTGAGTTATGGGATTA+TGG 0.262600 2_2:+3268647 Msa0231060:CDS
ATTCAGGTGCAGAAGATTAA+AGG 0.279805 2_2:+3270313 Msa0231060:three_prime_UTR
TTGTCTTCCTGCAGGCTCTT+TGG 0.304054 2_2:+3266291 Msa0231060:intron
TGGACTACTTTGAATCTTAC+TGG 0.317091 2_2:+3268074 Msa0231060:CDS
TACAGGAAGTCCTTGCGTTT+TGG 0.331181 2_2:+3268605 Msa0231060:intron
TAATCTTCTGCACCTGAATT+CGG 0.338853 2_2:-3270309 None:intergenic
GCATCCGGTCCCGTTTCTCC+AGG 0.342776 2_2:-3270023 None:intergenic
ATAATTGTAGTCAAAGATTC+TGG 0.354930 2_2:+3270067 Msa0231060:three_prime_UTR
TTATCTGCAACATAAAATAT+TGG 0.364672 2_2:-3269114 None:intergenic
GCATAGTTACTGTGTTGTTT+TGG 0.367503 2_2:-3267529 None:intergenic
CAGGGATGACAACCGAGTTT+AGG 0.373904 2_2:-3265787 None:intergenic
TGAAGTCCGGTGGTATTCTA+TGG 0.382713 2_2:+3265379 Msa0231060:CDS
GTGGATATTACCTGATCAAC+TGG 0.389173 2_2:+3265817 Msa0231060:CDS
AGCGTTGATGCGATGCGATC+AGG 0.391083 2_2:+3265345 Msa0231060:exon
TTGAGCACCTTTCCTATGTA+TGG 0.392195 2_2:-3267888 None:intergenic
TATTTGCAGGTTTATGCAAC+TGG 0.395959 2_2:+3267858 Msa0231060:intron
TCTCATAAACTGTGTGCCTT+AGG 0.396410 2_2:+3265842 Msa0231060:CDS
ACTACACAATTTCCGAATTC+AGG 0.400257 2_2:+3270297 Msa0231060:three_prime_UTR
GTACAGAAACATTGATTCTC+AGG 0.412055 2_2:+3265305 None:intergenic
TAACATGGTTGACTTAGTTC+CGG 0.420859 2_2:-3270356 None:intergenic
TCAATTTCTTACTTCTTTCG+TGG 0.422816 2_2:+3267907 Msa0231060:CDS
TTATGAGAACCCAGTTGATC+AGG 0.428042 2_2:-3265827 None:intergenic
AGTTCGGAGCAAAAGAGGTT+TGG 0.432296 2_2:-3265460 None:intergenic
CATAATCTATACAATGTAGA+AGG 0.432581 2_2:-3270412 None:intergenic
CATTGCGGCATACCCATACT+TGG 0.436101 2_2:-3267471 None:intergenic
GCTTAACCCAGGGTCATGAT+TGG 0.437236 2_2:+3267699 Msa0231060:intron
CTATGCTAAACACATATAAT+GGG 0.439884 2_2:-3266319 None:intergenic
CGGTTGTCATCCCTGCTTTG+TGG 0.440189 2_2:+3265795 Msa0231060:CDS
GGTAATATCCACCACAAAGC+AGG 0.447433 2_2:-3265806 None:intergenic
ATTCTGGCATAACTGACAAC+TGG 0.462155 2_2:+3270083 Msa0231060:three_prime_UTR
CCCAGGGTCATGATTGGAAT+AGG 0.463682 2_2:+3267705 Msa0231060:intron
TTTGCATAATATATTGATGA+GGG 0.466672 2_2:-3270486 None:intergenic
GTGTTGTTATTCTCTGTCTC+AGG 0.469803 2_2:+3265436 Msa0231060:CDS
AAAAGACCATCTGGCCTTGG+AGG 0.482213 2_2:+3267569 Msa0231060:CDS
CAAGAAAGAAAACACTCAAA+AGG 0.494816 2_2:-3267749 None:intergenic
CATCCGGTCCCGTTTCTCCA+GGG 0.494914 2_2:-3270022 None:intergenic
CAAGTATGGGTATGCCGCAA+TGG 0.495138 2_2:+3267472 Msa0231060:CDS
TGATGCGATGCGATCAGGAA+TGG 0.503353 2_2:+3265350 Msa0231060:exon
TTTACTGTGGATAGCAGCTC+CGG 0.517229 2_2:+3267506 Msa0231060:CDS
GCATAGTTCTAAGCACCCTC+TGG 0.519745 2_2:+3266336 Msa0231060:CDS
AAGTATGGGTATGCCGCAAT+GGG 0.520028 2_2:+3267473 Msa0231060:CDS
TGTCCAGTTCGGAGCAAAAG+AGG 0.527477 2_2:-3265465 None:intergenic
GGAGGAAACACTGTCCAGTT+CGG 0.528459 2_2:-3265476 None:intergenic
AGTGGCTCTTGACAGAAGGC+TGG 0.541829 2_2:+3268054 Msa0231060:CDS
GGTGGTATTCTATGGTTGGA+AGG 0.543813 2_2:+3265387 Msa0231060:CDS
CATAAACTGTGTGCCTTAGG+TGG 0.544823 2_2:+3265845 Msa0231060:CDS
TACCCCTGGAGAAACGGGAC+CGG 0.546054 2_2:+3270019 Msa0231060:CDS
CATGATTGGAATAGGAGAGC+AGG 0.550285 2_2:+3267713 Msa0231060:CDS
GTCCGGTGGTATTCTATGGT+TGG 0.550929 2_2:+3265383 Msa0231060:CDS
ATAGAGAATTTCTACTGTGT+AGG 0.552899 2_2:+3270378 Msa0231060:three_prime_UTR
GGAATGGAAAGGTTGAAGTC+CGG 0.561024 2_2:+3265366 Msa0231060:CDS
CAGTATATTCCTCCTAAACT+CGG 0.561685 2_2:+3265775 Msa0231060:intron
ATCCGGTCCCGTTTCTCCAG+GGG 0.569964 2_2:-3270021 None:intergenic
TTAAAGCTACAAACTGCTGC+CGG 0.570926 2_2:+3270337 Msa0231060:three_prime_UTR
AAATTTCAAAGTTCCACCTA+AGG 0.573726 2_2:-3265858 None:intergenic
CCTAACCCTCCAAGGCCAGA+TGG 0.576170 2_2:-3267575 None:intergenic
ACGAAGTGGCTCTTGACAGA+AGG 0.577785 2_2:+3268050 Msa0231060:CDS
TAAATGGAGAGCTGCAGGAG+TGG 0.581355 2_2:+3269083 Msa0231060:CDS
GGATGACAACCGAGTTTAGG+AGG 0.581383 2_2:-3265784 None:intergenic
CTATACAATGTAGAAGGTAG+CGG 0.581866 2_2:-3270406 None:intergenic
ACAATGACATTGCCAAGTAT+GGG 0.582382 2_2:+3267459 Msa0231060:CDS
TAAATGGAATTTCAACGAAG+TGG 0.584963 2_2:+3268036 Msa0231060:CDS
TGTTCTAACTGCAACTGGGT+CGG 0.587604 2_2:+3269029 Msa0231060:CDS
ATTTATTTAACAAGCTGATG+CGG 0.588740 2_2:+3270262 Msa0231060:three_prime_UTR
TTGTCATCCCTGCTTTGTGG+TGG 0.592504 2_2:+3265798 Msa0231060:CDS
AGTTTGTTCTAACTGCAACT+GGG 0.594800 2_2:+3269025 Msa0231060:intron
TTCCAACCATAGAATACCAC+CGG 0.602334 2_2:-3265385 None:intergenic
GTAATATCCACCACAAAGCA+GGG 0.603027 2_2:-3265805 None:intergenic
AGTTAGAACCTAACCCTCCA+AGG 0.604053 2_2:-3267583 None:intergenic
GGAGAGCTGCAGGAGTGGAA+AGG 0.606045 2_2:+3269088 Msa0231060:CDS
ACTGGTTTCATACCATACAT+AGG 0.607086 2_2:+3267876 Msa0231060:CDS
AAAGACCATCTGGCCTTGGA+GGG 0.614769 2_2:+3267570 Msa0231060:CDS
CGATGCGATCAGGAATGGAA+AGG 0.629047 2_2:+3265355 Msa0231060:exon
AAGAATATAGCCAAAACGCA+AGG 0.630017 2_2:-3268615 None:intergenic
TCTAACTGCAACTGGGTCGG+AGG 0.632359 2_2:+3269032 Msa0231060:CDS
TTTCATACCATACATAGGAA+AGG 0.636242 2_2:+3267881 Msa0231060:CDS
ATAATCCCATAACTCACAAG+AGG 0.642377 2_2:-3268645 None:intergenic
AAACTTAGATCTTCCCATTG+CGG 0.646070 2_2:-3267486 None:intergenic
ATGGAAAGGTTGAAGTCCGG+TGG 0.664819 2_2:+3265369 Msa0231060:CDS
GGGAAGATCTAAGTTTACTG+TGG 0.668273 2_2:+3267493 Msa0231060:CDS
TACAATGTAGAAGGTAGCGG+CGG 0.671918 2_2:-3270403 None:intergenic
TGGATATTACCTGATCAACT+GGG 0.675011 2_2:+3265818 Msa0231060:CDS
AGTAGAAATTCTCTATAACA+TGG 0.690292 2_2:-3270371 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTATTTTAAAGAAAA+AGG - chr2_2:3268132-3268151 None:intergenic 10.0%
!! GTAATAAAAATTAAAATAAC+CGG + chr2_2:3268304-3268323 Msa0231060:intron 10.0%
!! TATTAAATTATTAACCTTAT+AGG + chr2_2:3268807-3268826 Msa0231060:intron 10.0%
!! ATTAAATTATTAACCTTATA+GGG + chr2_2:3268808-3268827 Msa0231060:intron 10.0%
!!! TTTTCATTTATGATATATTT+TGG + chr2_2:3269746-3269765 Msa0231060:intron 10.0%
!! AACAAGTATTCAATAATAAT+TGG + chr2_2:3265630-3265649 Msa0231060:intron 15.0%
!! AAATATGAAATAACTTAACA+GGG - chr2_2:3266440-3266459 None:intergenic 15.0%
!!! CTTTTTGTTATCTAAAATAT+TGG + chr2_2:3267086-3267105 Msa0231060:intron 15.0%
!! ATAAATATACTATCTGATAA+AGG - chr2_2:3267405-3267424 None:intergenic 15.0%
!!! TTAAAGTATACTTTTTGATT+AGG + chr2_2:3268011-3268030 Msa0231060:intron 15.0%
!!! TATCCTTTGAAAAAAATAAA+TGG + chr2_2:3269067-3269086 Msa0231060:CDS 15.0%
!! GTTTAATAAAAATATACACA+CGG + chr2_2:3269481-3269500 Msa0231060:intron 15.0%
!! ACTAATAAGTAATTCTAAAT+TGG + chr2_2:3269807-3269826 Msa0231060:intron 15.0%
!!! TCTTATTCAGATTTTTAATT+AGG + chr2_2:3269843-3269862 Msa0231060:intron 15.0%
!!! CTTATTCAGATTTTTAATTA+GGG + chr2_2:3269844-3269863 Msa0231060:intron 15.0%
!!! TATTATAAATAAAGTACCTA+TGG + chr2_2:3269931-3269950 Msa0231060:intron 15.0%
!! TTTAATATGCTATATCTATT+GGG + chr2_2:3270165-3270184 Msa0231060:intron 15.0%
!! TTGAAACTTAAACTTCTATT+AGG - chr2_2:3266120-3266139 None:intergenic 20.0%
!! GAAATATGAAATAACTTAAC+AGG - chr2_2:3266441-3266460 None:intergenic 20.0%
!!! ACTTTTATTGATGATACAAT+AGG + chr2_2:3266532-3266551 Msa0231060:intron 20.0%
!!! TTTTATTTGGAACTGAATAT+TGG - chr2_2:3266645-3266664 None:intergenic 20.0%
!! ATATTCAGTTCCAAATAAAA+TGG + chr2_2:3266645-3266664 Msa0231060:intron 20.0%
!! AAGAAGTTATTGAATAAACA+GGG - chr2_2:3266693-3266712 None:intergenic 20.0%
!! TAAGAAGTTATTGAATAAAC+AGG - chr2_2:3266694-3266713 None:intergenic 20.0%
!! TTGTAATACTTCATTAGATA+TGG - chr2_2:3267038-3267057 None:intergenic 20.0%
!!! TCTAATGAAGTATTACAAAA+TGG + chr2_2:3267040-3267059 Msa0231060:intron 20.0%
!! AAAATATTGGATTGTAGTAA+AGG + chr2_2:3267099-3267118 Msa0231060:intron 20.0%
!! TAGAAAATGAATCTGTTATA+AGG + chr2_2:3267223-3267242 Msa0231060:intron 20.0%
!!! ATATTCAGTAAACTTGATTT+TGG + chr2_2:3267788-3267807 Msa0231060:intron 20.0%
!! ATGACTTTAAACAACTATAA+AGG - chr2_2:3267824-3267843 None:intergenic 20.0%
!!! ACTTTTTGATTAGGTATAAA+TGG + chr2_2:3268020-3268039 Msa0231060:intron 20.0%
!!! ATTTTTTTAGTGAAACAAAC+CGG - chr2_2:3268180-3268199 None:intergenic 20.0%
!! AGGAAAAAACACTAAATTAT+AGG - chr2_2:3268450-3268469 None:intergenic 20.0%
!!! ATAATTTAGTGTTTTTTCCT+AGG + chr2_2:3268450-3268469 Msa0231060:intron 20.0%
!! AATATTCTTCAACAAGAAAA+TGG - chr2_2:3268509-3268528 None:intergenic 20.0%
!!! TTTTTTTATTAGCTATCCTA+TGG + chr2_2:3268544-3268563 Msa0231060:intron 20.0%
!! TATAAAGTCAAATTCAATGT+GGG - chr2_2:3268905-3268924 None:intergenic 20.0%
!! ATATAAAGTCAAATTCAATG+TGG - chr2_2:3268906-3268925 None:intergenic 20.0%
!!! TCTCCATTTATTTTTTTCAA+AGG - chr2_2:3269073-3269092 None:intergenic 20.0%
!! TTATCTGCAACATAAAATAT+TGG - chr2_2:3269117-3269136 None:intergenic 20.0%
!!! GTAATTATTTGACAATTTTG+AGG + chr2_2:3269340-3269359 Msa0231060:intron 20.0%
!! AGTATAAAATAAAGAAGGAA+AGG - chr2_2:3269616-3269635 None:intergenic 20.0%
!!! ACAGAAGTATAAAATAAAGA+AGG - chr2_2:3269621-3269640 None:intergenic 20.0%
!!! ATTTTGGTGATTAAATTATC+TGG + chr2_2:3269762-3269781 Msa0231060:intron 20.0%
!! TAAAATGATAATAACTCCAT+AGG - chr2_2:3269950-3269969 None:intergenic 20.0%
!! CTTTAATATGCTATATCTAT+TGG + chr2_2:3270164-3270183 Msa0231060:intron 20.0%
!!! TTAATTTGTTTTGTTCAATG+CGG + chr2_2:3270231-3270250 Msa0231060:three_prime_UTR 20.0%
!!! GTATAGATTATGCTTAATTT+TGG + chr2_2:3270423-3270442 Msa0231060:three_prime_UTR 20.0%
! ACTACTACTACTTATTTCAT+TGG + chr2_2:3265548-3265567 Msa0231060:intron 25.0%
! CTACTACTACTTATTTCATT+GGG + chr2_2:3265549-3265568 Msa0231060:intron 25.0%
! ATACTTGTTTGATTAAGCTT+TGG - chr2_2:3265619-3265638 None:intergenic 25.0%
!! AAGCAACAAAAGGATTTTTA+AGG - chr2_2:3265964-3265983 None:intergenic 25.0%
! AAAGAATAACAAGCAACAAA+AGG - chr2_2:3265974-3265993 None:intergenic 25.0%
!! TGCTTTTCTAAATCAATGTA+TGG - chr2_2:3266090-3266109 None:intergenic 25.0%
!!! TACATTGATTTAGAAAAGCA+TGG + chr2_2:3266090-3266109 Msa0231060:intron 25.0%
!! GTTTTCAAACTAATGTTTTC+TGG + chr2_2:3266268-3266287 Msa0231060:intron 25.0%
! CTATGCTAAACACATATAAT+GGG - chr2_2:3266322-3266341 None:intergenic 25.0%
! ACTATGCTAAACACATATAA+TGG - chr2_2:3266323-3266342 None:intergenic 25.0%
! AAAAAGTGAAAATTACCAGA+GGG - chr2_2:3266354-3266373 None:intergenic 25.0%
! TAAAAAGTGAAAATTACCAG+AGG - chr2_2:3266355-3266374 None:intergenic 25.0%
! CCAACATGATAAAAAAGATT+AGG - chr2_2:3266387-3266406 None:intergenic 25.0%
!!! CCTAATCTTTTTTATCATGT+TGG + chr2_2:3266384-3266403 Msa0231060:intron 25.0%
!!! CTATTATTTTACCTGCTTTA+CGG - chr2_2:3266494-3266513 None:intergenic 25.0%
! TGATGATACAATAGGAATAT+AGG + chr2_2:3266540-3266559 Msa0231060:intron 25.0%
!!! AAATCAGTAGCCATTTTATT+TGG - chr2_2:3266658-3266677 None:intergenic 25.0%
! CATCTGACTATTATGTTATT+AGG - chr2_2:3266730-3266749 None:intergenic 25.0%
!! ATGCTGAATTGAAATTCTTT+TGG + chr2_2:3266873-3266892 Msa0231060:intron 25.0%
!! AAACGAAGTATTATTGAGTT+TGG + chr2_2:3267008-3267027 Msa0231060:intron 25.0%
!! GAAGTATTACAAAATGGTTA+TGG + chr2_2:3267046-3267065 Msa0231060:intron 25.0%
! AAAATGAATCTGTTATAAGG+AGG + chr2_2:3267226-3267245 Msa0231060:intron 25.0%
! AAATGAATCTGTTATAAGGA+GGG + chr2_2:3267227-3267246 Msa0231060:intron 25.0%
! TATTCCTACAATAAGTGATA+AGG + chr2_2:3267422-3267441 Msa0231060:intron 25.0%
! ATTCCTACAATAAGTGATAA+GGG + chr2_2:3267423-3267442 Msa0231060:intron 25.0%
!!! CTTTAAAACTTGAATCCAAT+TGG - chr2_2:3267997-3268016 None:intergenic 25.0%
!! AGTAATTTTCTTAAGAATGC+CGG + chr2_2:3268158-3268177 Msa0231060:intron 25.0%
!!! ATAAGTTGTTTTTATCTGAG+AGG - chr2_2:3268238-3268257 None:intergenic 25.0%
!!! CAACTTATTTTACAAACCTT+CGG + chr2_2:3268250-3268269 Msa0231060:intron 25.0%
! TCAGAAAATATGTTAAGAAC+CGG - chr2_2:3268326-3268345 None:intergenic 25.0%
! TGTTGAAGAATATTGAACTA+TGG + chr2_2:3268515-3268534 Msa0231060:intron 25.0%
! GTATTGTGAATCTTTAACAT+TGG + chr2_2:3268862-3268881 Msa0231060:intron 25.0%
! GAGCAATGATTAATATCTAA+TGG + chr2_2:3269239-3269258 Msa0231060:intron 25.0%
!! TTGATCTTTCATTTGAAACT+AGG - chr2_2:3269678-3269697 None:intergenic 25.0%
!!! GACAAGTAATTCTAAGATAT+TGG + chr2_2:3269709-3269728 Msa0231060:intron 25.0%
! TTATTAGTTATGAGAGATAG+CGG - chr2_2:3269795-3269814 None:intergenic 25.0%
! ATAATTGTAGTCAAAGATTC+TGG + chr2_2:3270067-3270086 Msa0231060:three_prime_UTR 25.0%
! ACAGTAAAAGATAAAGTAGT+GGG - chr2_2:3270204-3270223 None:intergenic 25.0%
! TACAGTAAAAGATAAAGTAG+TGG - chr2_2:3270205-3270224 None:intergenic 25.0%
!! ACTACTTTATCTTTTACTGT+AGG + chr2_2:3270204-3270223 Msa0231060:intron 25.0%
! ATTTATTTAACAAGCTGATG+CGG + chr2_2:3270262-3270281 Msa0231060:three_prime_UTR 25.0%
! AGTAGAAATTCTCTATAACA+TGG - chr2_2:3270374-3270393 None:intergenic 25.0%
! CATAATCTATACAATGTAGA+AGG - chr2_2:3270415-3270434 None:intergenic 25.0%
CTAAGAAAATGAAACCATTG+AGG - chr2_2:3265500-3265519 None:intergenic 30.0%
! CTCAATGGTTTCATTTTCTT+AGG + chr2_2:3265498-3265517 Msa0231060:intron 30.0%
! ATGGTTTCATTTTCTTAGGA+AGG + chr2_2:3265502-3265521 Msa0231060:intron 30.0%
CTGAATTAACTGTAATGTGT+TGG - chr2_2:3265594-3265613 None:intergenic 30.0%
GGAAAATAAGGGTTAAATGA+TGG - chr2_2:3265695-3265714 None:intergenic 30.0%
GAATATACTGCACAAAATGT+TGG - chr2_2:3265765-3265784 None:intergenic 30.0%
AAATTTCAAAGTTCCACCTA+AGG - chr2_2:3265861-3265880 None:intergenic 30.0%
TAGCATGTAGAGCAATTTAT+TGG - chr2_2:3266040-3266059 None:intergenic 30.0%
! GAAGTTTAAGTTTCAAAAGC+CGG + chr2_2:3266124-3266143 Msa0231060:intron 30.0%
TAGTTGCATAATTGTATTCG+AGG + chr2_2:3266159-3266178 Msa0231060:intron 30.0%
TCTAGATATAGAATGACATC+TGG - chr2_2:3266216-3266235 None:intergenic 30.0%
AAATAACTTAACAGGGAGAA+TGG - chr2_2:3266433-3266452 None:intergenic 30.0%
AGGAATATAGGATTACACAA+TGG + chr2_2:3266552-3266571 Msa0231060:intron 30.0%
GGAATATAGGATTACACAAT+GGG + chr2_2:3266553-3266572 Msa0231060:intron 30.0%
!! TTGGAACTGAATATTGGTTT+GGG - chr2_2:3266639-3266658 None:intergenic 30.0%
! TTTGGAACTGAATATTGGTT+TGG - chr2_2:3266640-3266659 None:intergenic 30.0%
ACTATTATGTTATTAGGCAG+CGG - chr2_2:3266724-3266743 None:intergenic 30.0%
AAGTAGATTCATGATATAGC+TGG + chr2_2:3266775-3266794 Msa0231060:intron 30.0%
TTGCATACATGGATACAAAA+CGG - chr2_2:3266807-3266826 None:intergenic 30.0%
CAATATTGCCAAATAGTGTT+AGG + chr2_2:3266936-3266955 Msa0231060:intron 30.0%
! TGAAAGTATGATAGTTTCGA+GGG + chr2_2:3267181-3267200 Msa0231060:intron 30.0%
ATACCCTTATCACTTATTGT+AGG - chr2_2:3267429-3267448 None:intergenic 30.0%
!! AGTGATAAGGGTATGTTTTT+AGG + chr2_2:3267435-3267454 Msa0231060:intron 30.0%
CTGAGTTAATCAGAACTAAA+AGG + chr2_2:3267660-3267679 Msa0231060:intron 30.0%
CAAGAAAGAAAACACTCAAA+AGG - chr2_2:3267752-3267771 None:intergenic 30.0%
! TTTGAGTGTTTTCTTTCTTG+AGG + chr2_2:3267752-3267771 Msa0231060:CDS 30.0%
! CGATTTCTTATGTTATTTGC+AGG + chr2_2:3267845-3267864 Msa0231060:intron 30.0%
TTTCATACCATACATAGGAA+AGG + chr2_2:3267881-3267900 Msa0231060:CDS 30.0%
TCAATTTCTTACTTCTTTCG+TGG + chr2_2:3267907-3267926 Msa0231060:CDS 30.0%
! AGATTAAGCAAAGGTGTATT+TGG - chr2_2:3267965-3267984 None:intergenic 30.0%
TAAATGGAATTTCAACGAAG+TGG + chr2_2:3268036-3268055 Msa0231060:CDS 30.0%
TTACCAAAACCAGCAAAAAA+TGG - chr2_2:3268100-3268119 None:intergenic 30.0%
! TTTCTGAGAGACAATATTAC+TGG + chr2_2:3268339-3268358 Msa0231060:intron 30.0%
! ATATTACTGGTTGTTGTGAA+AGG + chr2_2:3268352-3268371 Msa0231060:intron 30.0%
TTGTTGTGAAAGGATAGATT+GGG + chr2_2:3268362-3268381 Msa0231060:intron 30.0%
!!! ATTTAGTGTTTTTTCCTAGG+AGG + chr2_2:3268453-3268472 Msa0231060:intron 30.0%
! CTTATTAGTCTCAAATACGA+AGG - chr2_2:3268572-3268591 None:intergenic 30.0%
GGAGGGAAAAAGAAATATAA+GGG - chr2_2:3268715-3268734 None:intergenic 30.0%
AGGAGGGAAAAAGAAATATA+AGG - chr2_2:3268716-3268735 None:intergenic 30.0%
! TTCTTTTTCCCTCCTTTATT+TGG + chr2_2:3268721-3268740 Msa0231060:intron 30.0%
ACATCAGAGAATCCAAATAA+AGG - chr2_2:3268736-3268755 None:intergenic 30.0%
AATATATGAAAGGAGAGAGA+TGG - chr2_2:3268791-3268810 None:intergenic 30.0%
GATACAAATTTCACATGACA+CGG + chr2_2:3268840-3268859 Msa0231060:intron 30.0%
AAATTCAATGTGGGAAGAAT+AGG - chr2_2:3268896-3268915 None:intergenic 30.0%
! GTTGTTTCAATAAAGAAGCA+CGG + chr2_2:3269306-3269325 Msa0231060:intron 30.0%
! GTAGCAATTTTCAACAATAG+TGG - chr2_2:3269511-3269530 None:intergenic 30.0%
!! TCAGATTTTTAATTAGGGTG+AGG + chr2_2:3269849-3269868 Msa0231060:intron 30.0%
TTATGTACTTAGCATAGCAA+TGG + chr2_2:3269888-3269907 Msa0231060:intron 30.0%
TATGTACTTAGCATAGCAAT+GGG + chr2_2:3269889-3269908 Msa0231060:intron 30.0%
! TTAACCAAATGCTTCGATTT+TGG + chr2_2:3269967-3269986 Msa0231060:intron 30.0%
! TAAACCAAAATCGAAGCATT+TGG - chr2_2:3269974-3269993 None:intergenic 30.0%
!!! ATTTTGGTTTATGTAGGATG+TGG + chr2_2:3269983-3270002 Msa0231060:intron 30.0%
CTGTAAGTGAAAAATAGACA+TGG - chr2_2:3270142-3270161 None:intergenic 30.0%
! TAAAAGATAAAGTAGTGGGA+AGG - chr2_2:3270200-3270219 None:intergenic 30.0%
! CTTTATCTTTTACTGTAGGT+TGG + chr2_2:3270208-3270227 Msa0231060:intron 30.0%
ATAGAGAATTTCTACTGTGT+AGG + chr2_2:3270378-3270397 Msa0231060:three_prime_UTR 30.0%
AGAAAATGAAACCATTGAGG+AGG - chr2_2:3265497-3265516 None:intergenic 35.0%
AGAGAGAATTGTTCCAATCT+TGG - chr2_2:3265730-3265749 None:intergenic 35.0%
CAGTATATTCCTCCTAAACT+CGG + chr2_2:3265775-3265794 Msa0231060:intron 35.0%
TGGATATTACCTGATCAACT+GGG + chr2_2:3265818-3265837 Msa0231060:CDS 35.0%
GAAATGAAATTCCGTAAAGC+AGG + chr2_2:3266480-3266499 Msa0231060:intron 35.0%
CAAGGACTCTCAAATTTCTA+GGG - chr2_2:3266581-3266600 None:intergenic 35.0%
TGCATACATGGATACAAAAC+GGG - chr2_2:3266806-3266825 None:intergenic 35.0%
CTATGAAGCCTAACACTATT+TGG - chr2_2:3266947-3266966 None:intergenic 35.0%
CAAATAGTGTTAGGCTTCAT+AGG + chr2_2:3266945-3266964 Msa0231060:intron 35.0%
AGTAAAGGATCCAAAAGCTA+TGG + chr2_2:3267114-3267133 Msa0231060:intron 35.0%
! CTGAAAGTATGATAGTTTCG+AGG + chr2_2:3267180-3267199 Msa0231060:intron 35.0%
TACAATGACATTGCCAAGTA+TGG + chr2_2:3267458-3267477 Msa0231060:CDS 35.0%
ACAATGACATTGCCAAGTAT+GGG + chr2_2:3267459-3267478 Msa0231060:CDS 35.0%
AAACTTAGATCTTCCCATTG+CGG - chr2_2:3267489-3267508 None:intergenic 35.0%
!!! GCATAGTTACTGTGTTGTTT+TGG - chr2_2:3267532-3267551 None:intergenic 35.0%
TATCAAGCAAAAAGACCATC+TGG + chr2_2:3267560-3267579 Msa0231060:CDS 35.0%
TATTTGCAGGTTTATGCAAC+TGG + chr2_2:3267858-3267877 Msa0231060:intron 35.0%
! ACTGGTTTCATACCATACAT+AGG + chr2_2:3267876-3267895 Msa0231060:CDS 35.0%
ATATTACTGCTTCGAGTATG+TGG + chr2_2:3267938-3267957 Msa0231060:intron 35.0%
AACTTGAATCCAATTGGTGA+AGG - chr2_2:3267991-3268010 None:intergenic 35.0%
TGGACTACTTTGAATCTTAC+TGG + chr2_2:3268074-3268093 Msa0231060:CDS 35.0%
!!! CTTATTTTACAAACCTTCGG+AGG + chr2_2:3268253-3268272 Msa0231060:intron 35.0%
GTTGTTGTGAAAGGATAGAT+TGG + chr2_2:3268361-3268380 Msa0231060:intron 35.0%
AAAGGATAGATTGGGTGTAT+GGG + chr2_2:3268370-3268389 Msa0231060:intron 35.0%
! TAAGAGATTTGTGCCATTAC+AGG + chr2_2:3268588-3268607 Msa0231060:intron 35.0%
AAGAATATAGCCAAAACGCA+AGG - chr2_2:3268618-3268637 None:intergenic 35.0%
ATAATCCCATAACTCACAAG+AGG - chr2_2:3268648-3268667 None:intergenic 35.0%
TCTTGTGAGTTATGGGATTA+TGG + chr2_2:3268647-3268666 Msa0231060:CDS 35.0%
!!! TATGGCTATACTTTTTCCAC+TGG + chr2_2:3268665-3268684 Msa0231060:CDS 35.0%
AACAAAGTCATACATACCAG+TGG - chr2_2:3268684-3268703 None:intergenic 35.0%
ACTGGTATGTATGACTTTGT+TGG + chr2_2:3268683-3268702 Msa0231060:intron 35.0%
CAGAGAATCCAAATAAAGGA+GGG - chr2_2:3268732-3268751 None:intergenic 35.0%
TCAGAGAATCCAAATAAAGG+AGG - chr2_2:3268733-3268752 None:intergenic 35.0%
TATCTTTCTCTCTCCCTATA+AGG - chr2_2:3268824-3268843 None:intergenic 35.0%
! AGTTTGTTCTAACTGCAACT+GGG + chr2_2:3269025-3269044 Msa0231060:intron 35.0%
AAAAATAAATGGAGAGCTGC+AGG + chr2_2:3269078-3269097 Msa0231060:CDS 35.0%
! TAAGTCGAAGCATTTAGAGA+CGG - chr2_2:3269422-3269441 None:intergenic 35.0%
TTAGCATAGCAATGGGTAAT+GGG + chr2_2:3269896-3269915 Msa0231060:intron 35.0%
!!! GCTTCGATTTTGGTTTATGT+AGG + chr2_2:3269977-3269996 Msa0231060:intron 35.0%
! GATTTTATCTCTTTTACCCC+TGG + chr2_2:3270005-3270024 Msa0231060:CDS 35.0%
GTGAAAAATAGACATGGCTT+CGG - chr2_2:3270136-3270155 None:intergenic 35.0%
!!! TTTGTTTTGTTCAATGCGGT+AGG + chr2_2:3270235-3270254 Msa0231060:three_prime_UTR 35.0%
ACTACACAATTTCCGAATTC+AGG + chr2_2:3270297-3270316 Msa0231060:three_prime_UTR 35.0%
TAATCTTCTGCACCTGAATT+CGG - chr2_2:3270312-3270331 None:intergenic 35.0%
ATTCAGGTGCAGAAGATTAA+AGG + chr2_2:3270313-3270332 Msa0231060:three_prime_UTR 35.0%
! TAACATGGTTGACTTAGTTC+CGG - chr2_2:3270359-3270378 None:intergenic 35.0%
CTATACAATGTAGAAGGTAG+CGG - chr2_2:3270409-3270428 None:intergenic 35.0%
TTCCAACCATAGAATACCAC+CGG - chr2_2:3265388-3265407 None:intergenic 40.0%
! GTGTTGTTATTCTCTGTCTC+AGG + chr2_2:3265436-3265455 Msa0231060:CDS 40.0%
GGTTTGGGAGAGGAAAATAA+GGG - chr2_2:3265706-3265725 None:intergenic 40.0%
! TGGTTTGGGAGAGGAAAATA+AGG - chr2_2:3265707-3265726 None:intergenic 40.0%
! TGTTCCAATCTTGGTGGTTT+GGG - chr2_2:3265721-3265740 None:intergenic 40.0%
! TTGTTCCAATCTTGGTGGTT+TGG - chr2_2:3265722-3265741 None:intergenic 40.0%
GAGAATTGTTCCAATCTTGG+TGG - chr2_2:3265727-3265746 None:intergenic 40.0%
GTAATATCCACCACAAAGCA+GGG - chr2_2:3265808-3265827 None:intergenic 40.0%
GTGGATATTACCTGATCAAC+TGG + chr2_2:3265817-3265836 Msa0231060:CDS 40.0%
TTATGAGAACCCAGTTGATC+AGG - chr2_2:3265830-3265849 None:intergenic 40.0%
TCTCATAAACTGTGTGCCTT+AGG + chr2_2:3265842-3265861 Msa0231060:CDS 40.0%
AAAGCTTTCGATGATGAGCT+TGG + chr2_2:3266246-3266265 Msa0231060:intron 40.0%
CCAAGGACTCTCAAATTTCT+AGG - chr2_2:3266582-3266601 None:intergenic 40.0%
CCTAGAAATTTGAGAGTCCT+TGG + chr2_2:3266579-3266598 Msa0231060:intron 40.0%
GTTAGGTAGGATTGCATACA+TGG - chr2_2:3266818-3266837 None:intergenic 40.0%
GTCGAAAATACTCGTTAGGT+AGG - chr2_2:3266831-3266850 None:intergenic 40.0%
AGCAGTCGAAAATACTCGTT+AGG - chr2_2:3266835-3266854 None:intergenic 40.0%
TAGCTTATGACTCCCAACAT+AGG + chr2_2:3266901-3266920 Msa0231060:intron 40.0%
ATGTGCTTGACACCTATGTT+GGG - chr2_2:3266916-3266935 None:intergenic 40.0%
GTCTACAGAATAAACCCACA+GGG - chr2_2:3267140-3267159 None:intergenic 40.0%
AGTCTACAGAATAAACCCAC+AGG - chr2_2:3267141-3267160 None:intergenic 40.0%
ACTATCTGATAAAGGCAGAG+TGG - chr2_2:3267397-3267416 None:intergenic 40.0%
GGGAAGATCTAAGTTTACTG+TGG + chr2_2:3267493-3267512 Msa0231060:CDS 40.0%
!!! AGTTACTGTGTTGTTTTGGC+CGG - chr2_2:3267528-3267547 None:intergenic 40.0%
TACTGTGTTTGCTTAACCCA+GGG + chr2_2:3267689-3267708 Msa0231060:intron 40.0%
TTGAGCACCTTTCCTATGTA+TGG - chr2_2:3267891-3267910 None:intergenic 40.0%
TGAAGGAGGAGATTAAGCAA+AGG - chr2_2:3267974-3267993 None:intergenic 40.0%
TAATCTCCTCCTTCACCAAT+TGG + chr2_2:3267979-3267998 Msa0231060:intron 40.0%
TTGAATCCAATTGGTGAAGG+AGG - chr2_2:3267988-3268007 None:intergenic 40.0%
!!! TCTTACTGGCCATTTTTTGC+TGG + chr2_2:3268088-3268107 Msa0231060:CDS 40.0%
!!! TGGCCATTTTTTGCTGGTTT+TGG + chr2_2:3268094-3268113 Msa0231060:CDS 40.0%
GAAAGGATAGATTGGGTGTA+TGG + chr2_2:3268369-3268388 Msa0231060:intron 40.0%
GCACACTTTCCAAAGTAGAA+AGG - chr2_2:3268410-3268429 None:intergenic 40.0%
CTCAAATACGAAGGAACCAT+AGG - chr2_2:3268563-3268582 None:intergenic 40.0%
TTCTCTCCTCTTGTGAGTTA+TGG + chr2_2:3268639-3268658 Msa0231060:CDS 40.0%
TCTCTCCTCTTGTGAGTTAT+GGG + chr2_2:3268640-3268659 Msa0231060:CDS 40.0%
CAATGTGGGAAGAATAGGTT+TGG - chr2_2:3268891-3268910 None:intergenic 40.0%
TGCTATGCTATAGTGTCATG+AGG + chr2_2:3268969-3268988 Msa0231060:intron 40.0%
GCTATGCTATAGTGTCATGA+GGG + chr2_2:3268970-3268989 Msa0231060:intron 40.0%
! CAGTTTGTTCTAACTGCAAC+TGG + chr2_2:3269024-3269043 Msa0231060:intron 40.0%
! CTGTCTAGAGTATAGAGTGA+AGG - chr2_2:3269167-3269186 None:intergenic 40.0%
TACTAAGCAAGTGACCCAAA+AGG + chr2_2:3269210-3269229 Msa0231060:intron 40.0%
ACTAAGCAAGTGACCCAAAA+GGG + chr2_2:3269211-3269230 Msa0231060:intron 40.0%
! CATTGCTCAAGTACCCTTTT+GGG - chr2_2:3269227-3269246 None:intergenic 40.0%
! TCATTGCTCAAGTACCCTTT+TGG - chr2_2:3269228-3269247 None:intergenic 40.0%
GAAACAACTTGCACTTACAG+TGG - chr2_2:3269294-3269313 None:intergenic 40.0%
CATTTAGAGACGGCAATAAG+AGG - chr2_2:3269412-3269431 None:intergenic 40.0%
CTTAGCATAGCAATGGGTAA+TGG + chr2_2:3269895-3269914 Msa0231060:intron 40.0%
ATTCTGGCATAACTGACAAC+TGG + chr2_2:3270083-3270102 Msa0231060:three_prime_UTR 40.0%
AAAAATAGACATGGCTTCGG+TGG - chr2_2:3270133-3270152 None:intergenic 40.0%
TTAAAGCTACAAACTGCTGC+CGG + chr2_2:3270337-3270356 Msa0231060:three_prime_UTR 40.0%
GGAATGGAAAGGTTGAAGTC+CGG + chr2_2:3265366-3265385 Msa0231060:CDS 45.0%
TGAAGTCCGGTGGTATTCTA+TGG + chr2_2:3265379-3265398 Msa0231060:CDS 45.0%
GGTGGTATTCTATGGTTGGA+AGG + chr2_2:3265387-3265406 Msa0231060:CDS 45.0%
AGTTCGGAGCAAAAGAGGTT+TGG - chr2_2:3265463-3265482 None:intergenic 45.0%
! AAACCTCTTTTGCTCCGAAC+TGG + chr2_2:3265462-3265481 Msa0231060:CDS 45.0%
GGTAATATCCACCACAAAGC+AGG - chr2_2:3265809-3265828 None:intergenic 45.0%
CATAAACTGTGTGCCTTAGG+TGG + chr2_2:3265845-3265864 Msa0231060:CDS 45.0%
AAGTTTCAAAAGCCGGTGCT+TGG + chr2_2:3266131-3266150 Msa0231060:intron 45.0%
!!! TTTTCTGGTTGTCTTCCTGC+AGG + chr2_2:3266283-3266302 Msa0231060:intron 45.0%
ACAGGGAGAATGGCTATCAA+GGG - chr2_2:3266423-3266442 None:intergenic 45.0%
AACAGGGAGAATGGCTATCA+AGG - chr2_2:3266424-3266443 None:intergenic 45.0%
CAAGCTCTCGAGTTCTTGAA+GGG - chr2_2:3266610-3266629 None:intergenic 45.0%
GATGTGCTTGACACCTATGT+TGG - chr2_2:3266917-3266936 None:intergenic 45.0%
! TTTTCTCTCGCTGAGAGACT+AGG + chr2_2:3267296-3267315 Msa0231060:intron 45.0%
TTTCTCTCGCTGAGAGACTA+GGG + chr2_2:3267297-3267316 Msa0231060:intron 45.0%
AGAGCAAGAGTTCGAAGAAG+TGG - chr2_2:3267336-3267355 None:intergenic 45.0%
AAGTATGGGTATGCCGCAAT+GGG + chr2_2:3267473-3267492 Msa0231060:CDS 45.0%
TTTACTGTGGATAGCAGCTC+CGG + chr2_2:3267506-3267525 Msa0231060:CDS 45.0%
AGTTAGAACCTAACCCTCCA+AGG - chr2_2:3267586-3267605 None:intergenic 45.0%
CTACTGTGTTTGCTTAACCC+AGG + chr2_2:3267688-3267707 Msa0231060:intron 45.0%
CCTATTCCAATCATGACCCT+GGG - chr2_2:3267708-3267727 None:intergenic 45.0%
TCCTATTCCAATCATGACCC+TGG - chr2_2:3267709-3267728 None:intergenic 45.0%
CATGATTGGAATAGGAGAGC+AGG + chr2_2:3267713-3267732 Msa0231060:CDS 45.0%
AAGAACTGTACTTCCTCCGA+AGG - chr2_2:3268269-3268288 None:intergenic 45.0%
AGATTGGGTGTATGGGAATG+AGG + chr2_2:3268377-3268396 Msa0231060:intron 45.0%
GTGTATGGGAATGAGGATTG+AGG + chr2_2:3268384-3268403 Msa0231060:intron 45.0%
GGATTGAGGCCTTTCTACTT+TGG + chr2_2:3268398-3268417 Msa0231060:intron 45.0%
AAATCTCACACAAGCCTCCT+AGG - chr2_2:3268470-3268489 None:intergenic 45.0%
AACGCAAGGACTTCCTGTAA+TGG - chr2_2:3268604-3268623 None:intergenic 45.0%
! TACAGGAAGTCCTTGCGTTT+TGG + chr2_2:3268605-3268624 Msa0231060:intron 45.0%
TGTTCTAACTGCAACTGGGT+CGG + chr2_2:3269029-3269048 Msa0231060:CDS 45.0%
ATAAGAGGAGGGTCAAATGG+TGG - chr2_2:3269397-3269416 None:intergenic 45.0%
GCAATAAGAGGAGGGTCAAA+TGG - chr2_2:3269400-3269419 None:intergenic 45.0%
TAGAGACGGCAATAAGAGGA+GGG - chr2_2:3269408-3269427 None:intergenic 45.0%
TTAGAGACGGCAATAAGAGG+AGG - chr2_2:3269409-3269428 None:intergenic 45.0%
! CTCTTTTACCCCTGGAGAAA+CGG + chr2_2:3270013-3270032 Msa0231060:CDS 45.0%
! TCTTTTACCCCTGGAGAAAC+GGG + chr2_2:3270014-3270033 Msa0231060:CDS 45.0%
! TACAATGTAGAAGGTAGCGG+CGG - chr2_2:3270406-3270425 None:intergenic 45.0%
!! TTAATAATTTAATATATGAA+AGG - chr2_2:3268801-3268820 None:intergenic 5.0%
TGATGCGATGCGATCAGGAA+TGG + chr2_2:3265350-3265369 Msa0231060:exon 50.0%
CGATGCGATCAGGAATGGAA+AGG + chr2_2:3265355-3265374 Msa0231060:exon 50.0%
ATGGAAAGGTTGAAGTCCGG+TGG + chr2_2:3265369-3265388 Msa0231060:CDS 50.0%
GTCCGGTGGTATTCTATGGT+TGG + chr2_2:3265383-3265402 Msa0231060:CDS 50.0%
TGTCCAGTTCGGAGCAAAAG+AGG - chr2_2:3265468-3265487 None:intergenic 50.0%
GGAGGAAACACTGTCCAGTT+CGG - chr2_2:3265479-3265498 None:intergenic 50.0%
GGACAGTGTTTCCTCCTCAA+TGG + chr2_2:3265483-3265502 Msa0231060:intron 50.0%
! CAATCTTGGTGGTTTGGGAG+AGG - chr2_2:3265716-3265735 None:intergenic 50.0%
CTCTCCCAAACCACCAAGAT+TGG + chr2_2:3265714-3265733 Msa0231060:intron 50.0%
GGATGACAACCGAGTTTAGG+AGG - chr2_2:3265787-3265806 None:intergenic 50.0%
CAGGGATGACAACCGAGTTT+AGG - chr2_2:3265790-3265809 None:intergenic 50.0%
TTGTCATCCCTGCTTTGTGG+TGG + chr2_2:3265798-3265817 Msa0231060:CDS 50.0%
GCAACTATCTTGCCAAGCAC+CGG - chr2_2:3266146-3266165 None:intergenic 50.0%
TTGTCTTCCTGCAGGCTCTT+TGG + chr2_2:3266291-3266310 Msa0231060:intron 50.0%
GGTAAAACCAAAGAGCCTGC+AGG - chr2_2:3266301-3266320 None:intergenic 50.0%
!! GCATAGTTCTAAGCACCCTC+TGG + chr2_2:3266336-3266355 Msa0231060:CDS 50.0%
GTTCTTGAAGGGAGAGACCA+AGG - chr2_2:3266599-3266618 None:intergenic 50.0%
CCAAGCTCTCGAGTTCTTGA+AGG - chr2_2:3266611-3266630 None:intergenic 50.0%
CCTTCAAGAACTCGAGAGCT+TGG + chr2_2:3266608-3266627 Msa0231060:intron 50.0%
ATCCAAAAGCTATGGCCCTG+TGG + chr2_2:3267122-3267141 Msa0231060:intron 50.0%
TCCAAAAGCTATGGCCCTGT+GGG + chr2_2:3267123-3267142 Msa0231060:intron 50.0%
! TCGAGGGAGTCGTCTTTTAG+AGG + chr2_2:3267197-3267216 Msa0231060:intron 50.0%
AGGAGGGTGAATCACTGAGA+TGG + chr2_2:3267243-3267262 Msa0231060:intron 50.0%
GGAGGGTGAATCACTGAGAT+GGG + chr2_2:3267244-3267263 Msa0231060:intron 50.0%
TGAATCACTGAGATGGGAGG+AGG + chr2_2:3267250-3267269 Msa0231060:intron 50.0%
GAATCACTGAGATGGGAGGA+GGG + chr2_2:3267251-3267270 Msa0231060:intron 50.0%
CATTGCGGCATACCCATACT+TGG - chr2_2:3267474-3267493 None:intergenic 50.0%
CAAGTATGGGTATGCCGCAA+TGG + chr2_2:3267472-3267491 Msa0231060:CDS 50.0%
GCAAAAAGACCATCTGGCCT+TGG + chr2_2:3267566-3267585 Msa0231060:CDS 50.0%
!! AAAAGACCATCTGGCCTTGG+AGG + chr2_2:3267569-3267588 Msa0231060:CDS 50.0%
!! AAAGACCATCTGGCCTTGGA+GGG + chr2_2:3267570-3267589 Msa0231060:CDS 50.0%
GCTTAACCCAGGGTCATGAT+TGG + chr2_2:3267699-3267718 Msa0231060:intron 50.0%
CCCAGGGTCATGATTGGAAT+AGG + chr2_2:3267705-3267724 Msa0231060:intron 50.0%
ACGAAGTGGCTCTTGACAGA+AGG + chr2_2:3268050-3268069 Msa0231060:CDS 50.0%
TAAATGGAGAGCTGCAGGAG+TGG + chr2_2:3269083-3269102 Msa0231060:CDS 50.0%
GGGTCACTTGCTTAGTAGCT+AGG - chr2_2:3269207-3269226 None:intergenic 50.0%
!! CATAGCAATGGGTAATGGGC+TGG + chr2_2:3269900-3269919 Msa0231060:intron 50.0%
! GCGCTTTTCTGTCTTGCATC+CGG - chr2_2:3270041-3270060 None:intergenic 50.0%
!! AGCGTTGATGCGATGCGATC+AGG + chr2_2:3265345-3265364 Msa0231060:exon 55.0%
CGGTTGTCATCCCTGCTTTG+TGG + chr2_2:3265795-3265814 Msa0231060:CDS 55.0%
! ACCCACAGGGCCATAGCTTT+TGG - chr2_2:3267127-3267146 None:intergenic 55.0%
GGGTGAATCACTGAGATGGG+AGG + chr2_2:3267247-3267266 Msa0231060:intron 55.0%
CTCGCTGAGAGACTAGGGTT+AGG + chr2_2:3267302-3267321 Msa0231060:intron 55.0%
AGTGGCTCTTGACAGAAGGC+TGG + chr2_2:3268054-3268073 Msa0231060:CDS 55.0%
TCTAACTGCAACTGGGTCGG+AGG + chr2_2:3269032-3269051 Msa0231060:CDS 55.0%
CCTAACCCTCCAAGGCCAGA+TGG - chr2_2:3267578-3267597 None:intergenic 60.0%
!! CCATCTGGCCTTGGAGGGTT+AGG + chr2_2:3267575-3267594 Msa0231060:intron 60.0%
GGAGAGCTGCAGGAGTGGAA+AGG + chr2_2:3269088-3269107 Msa0231060:CDS 60.0%
TACCCCTGGAGAAACGGGAC+CGG + chr2_2:3270019-3270038 Msa0231060:CDS 60.0%
ATCCGGTCCCGTTTCTCCAG+GGG - chr2_2:3270024-3270043 None:intergenic 60.0%
CATCCGGTCCCGTTTCTCCA+GGG - chr2_2:3270025-3270044 None:intergenic 60.0%
GCATCCGGTCCCGTTTCTCC+AGG - chr2_2:3270026-3270045 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 3265311 3270493 3265311 ID=Msa0231060;Name=Msa0231060
chr2_2 mRNA 3265311 3270493 3265311 ID=Msa0231060-mRNA-1;Parent=Msa0231060;Name=Msa0231060-mRNA-1;_AED=0.12;_eAED=0.15;_QI=46|0.9|0.90|1|0.7|0.72|11|307|317
chr2_2 exon 3265311 3265487 3265311 ID=Msa0231060-mRNA-1:exon:1186;Parent=Msa0231060-mRNA-1
chr2_2 exon 3265778 3265919 3265778 ID=Msa0231060-mRNA-1:exon:1187;Parent=Msa0231060-mRNA-1
chr2_2 exon 3266305 3266357 3266305 ID=Msa0231060-mRNA-1:exon:1188;Parent=Msa0231060-mRNA-1
chr2_2 exon 3267457 3267591 3267457 ID=Msa0231060-mRNA-1:exon:1189;Parent=Msa0231060-mRNA-1
chr2_2 exon 3267710 3267773 3267710 ID=Msa0231060-mRNA-1:exon:1190;Parent=Msa0231060-mRNA-1
chr2_2 exon 3267867 3267952 3267867 ID=Msa0231060-mRNA-1:exon:1191;Parent=Msa0231060-mRNA-1
chr2_2 exon 3268033 3268115 3268033 ID=Msa0231060-mRNA-1:exon:1192;Parent=Msa0231060-mRNA-1
chr2_2 exon 3268610 3268686 3268610 ID=Msa0231060-mRNA-1:exon:1193;Parent=Msa0231060-mRNA-1
chr2_2 exon 3269027 3269142 3269027 ID=Msa0231060-mRNA-1:exon:1194;Parent=Msa0231060-mRNA-1
chr2_2 exon 3269999 3270104 3269999 ID=Msa0231060-mRNA-1:exon:1195;Parent=Msa0231060-mRNA-1
chr2_2 exon 3270226 3270493 3270226 ID=Msa0231060-mRNA-1:exon:1196;Parent=Msa0231060-mRNA-1
chr2_2 five_prime_UTR 3265311 3265356 3265311 ID=Msa0231060-mRNA-1:five_prime_utr;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3265357 3265487 3265357 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3265778 3265919 3265778 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3266305 3266357 3266305 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3267457 3267591 3267457 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3267710 3267773 3267710 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3267867 3267952 3267867 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3268033 3268115 3268033 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3268610 3268686 3268610 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3269027 3269142 3269027 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 CDS 3269999 3270065 3269999 ID=Msa0231060-mRNA-1:cds;Parent=Msa0231060-mRNA-1
chr2_2 three_prime_UTR 3270066 3270104 3270066 ID=Msa0231060-mRNA-1:three_prime_utr;Parent=Msa0231060-mRNA-1
chr2_2 three_prime_UTR 3270226 3270493 3270226 ID=Msa0231060-mRNA-1:three_prime_utr;Parent=Msa0231060-mRNA-1
Gene Sequence

>Msa0231060

ATGCGATCAGGAATGGAAAGGTTGAAGTCCGGTGGTATTCTATGGTTGGAAGGTTTGAAAGAAGCGTGCTGTCTTCATCGTGTTGTTATTCTCTGTCTCAGGTCCAAACCTCTTTTGCTCCGAACTGGACATATATTCCTCCTAAACTCGGTTGTCATCCCTGCTTTGTGGTGGATATTACCTGATCAACTGGGTTCTCATAAACTGTGTGCCTTAGGTGGAACTTTGAAATTTTATTCTTTCTTACGTCTTGTGCTCATTCAGCTCTTTTATGCTCTTTGGTTTTACCCATTATATGTGTTTAGCATAGTTCTAAGCACCCTCTGGTACAATGACATTGCCAAGTATGGGTATGCCGCAATGGGAAGATCTAAGTTTACTGTGGATAGCAGCTCCGGCCAAAACAACACAGTAACTATGCAAAATGCTTATCAAGCAAAAAGACCATCTGGCCTTGGAGGGGTCATGATTGGAATAGGAGAGCAGGTGTACTCGATACTCCTTTTGAGTGTTTTCTTTCTTGAGGTTTATGCAACTGGTTTCATACCATACATAGGAAAGGTGCTCAATTTCTTACTTCTTTCGTGGATGTATGCATATTACTGCTTCGAGTATAAATGGAATTTCAACGAAGTGGCTCTTGACAGAAGGCTGGACTACTTTGAATCTTACTGGCCATTTTTTGCTGGTTTTGGAAGTCCTTGCGTTTTGGCTATATTCTTTTTCTCTCCTCTTGTGAGTTATGGGATTATGGCTATACTTTTTCCACTGTTTGTTCTAACTGCAACTGGGTCGGAGGCTGAACAAGAAATATCCTTTGAAAAAAATAAATGGAGAGCTGCAGGAGTGGAAAGGCTTCCAATATTTTATGTTGCAGATAATGTGTCGATGTGGATTTTATCTCTTTTACCCCTGGAGAAACGGGACCGGATGCAAGACAGAAAAGCGCAATAA

Protein sequence

>Msa0231060

MRSGMERLKSGGILWLEGLKEACCLHRVVILCLRSKPLLLRTGHIFLLNSVVIPALWWILPDQLGSHKLCALGGTLKFYSFLRLVLIQLFYALWFYPLYVFSIVLSTLWYNDIAKYGYAAMGRSKFTVDSSSGQNNTVTMQNAYQAKRPSGLGGVMIGIGEQVYSILLLSVFFLEVYATGFIPYIGKVLNFLLLSWMYAYYCFEYKWNFNEVALDRRLDYFESYWPFFAGFGSPCVLAIFFFSPLVSYGIMAILFPLFVLTATGSEAEQEISFEKNKWRAAGVERLPIFYVADNVSMWILSLLPLEKRDRMQDRKAQ*