AlfalfaGEDB | Msa1098210

M. sativa cultivar zhongmu-4 / Msa1098210

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098210	KAG4922742.1	57.394	284	77	7	5	271	92	348	1.16e-91	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098210	sp\|Q3E8W4\|ANX2_ARATH	35.789	285	120	6	2	254	553	806	8.72e-40	150

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098210	A0A4D6NFN5	56.250	288	82	8	1	271	78	338	6.22e-91	282

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0760130	Msa1098210	0.801015	1.098880e-48	-8.615850e-47
Msa1098210	Msa1420490	0.801804	7.573542e-49	-8.615850e-47
Msa1098210	Msa1423390	0.801979	6.972478e-49	-8.615850e-47
Msa1098210	Msa1440370	0.803239	3.833468e-49	-8.615850e-47
Msa1098210	Msa1440810	0.803071	4.153314e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098210	MtrunA17_Chr7g0220711	44.295	298	93	8	1	253	66	335	3.63e-65	206
Msa1098210	MtrunA17_Chr7g0219841	41.613	310	94	6	1	268	66	330	5.81e-64	203
Msa1098210	MtrunA17_Chr7g0219831	42.857	287	100	6	11	256	86	349	6.54e-59	191
Msa1098210	MtrunA17_Chr7g0219871	40.803	299	92	9	11	250	82	354	2.07e-53	177
Msa1098210	MtrunA17_Chr7g0245131	35.689	283	123	7	2	254	568	821	5.14e-42	153
Msa1098210	MtrunA17_Chr1g0190581	34.722	288	127	7	2	257	554	812	6.46e-39	144
Msa1098210	MtrunA17_Chr2g0292501	34.767	279	117	7	2	247	553	799	7.09e-39	144
Msa1098210	MtrunA17_Chr2g0318301	33.453	278	122	7	2	247	534	780	1.01e-37	140
Msa1098210	MtrunA17_Chr7g0274261	33.916	286	128	8	2	255	559	815	1.47e-37	140
Msa1098210	MtrunA17_Chr8g0352381	33.455	275	125	5	2	247	563	808	1.68e-36	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098210	AT5G28680.1	35.789	285	120	6	2	254	553	806	8.87e-41	150
Msa1098210	AT5G28680.2	35.789	285	120	6	2	254	553	806	8.87e-41	150
Msa1098210	AT3G04690.1	34.708	291	127	6	2	260	549	808	7.28e-40	147
Msa1098210	AT4G39110.1	35.145	276	119	7	2	247	558	803	6.12e-39	145
Msa1098210	AT3G51550.1	34.875	281	120	8	2	250	569	818	1.14e-38	144
Msa1098210	AT2G21480.1	33.696	276	123	6	2	247	557	802	1.69e-37	140
Msa1098210	AT5G54380.1	33.094	278	123	7	2	247	542	788	2.98e-37	140
Msa1098210	AT1G30570.1	33.094	278	123	6	2	247	552	798	2.68e-36	137
Msa1098210	AT3G46290.1	32.971	276	126	6	2	247	517	763	4.65e-36	136
Msa1098210	AT5G39000.1	34.146	287	129	7	4	258	553	811	1.98e-35	134

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Find 42 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCATTGCACCAAAATGTT+GGG	0.485988	7_3:-24935526	Msa1098210:CDS
AAGTGTGACGTTTACTCCTT+TGG	0.389570	7_3:-24935645	Msa1098210:CDS
AATATTGATGAGTATCTCAA+AGG	0.595878	7_3:-24935549	Msa1098210:CDS
ACAAATACTTCCCAACATTT+TGG	0.207105	7_3:+24935516	None:intergenic
ACCAACAATGGGTGAAGTGG+AGG	0.617875	7_3:-24935451	Msa1098210:CDS
ACCAACAATGGGTGAAGTTG+AGG	0.556621	7_3:-24937830	Msa1098210:CDS
ACCTCAACTTCACCCATTGT+TGG	0.429207	7_3:+24937829	None:intergenic
ACCTCCACTTCACCCATTGT+TGG	0.416363	7_3:+24935450	None:intergenic
ACGACCAACAATGGGTGAAG+TGG	0.585706	7_3:-24935454	Msa1098210:CDS
AGTAAACAAAGGTCCTTGCA+AGG	0.618432	7_3:+24939324	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAAATTAGGATGATTAAGT+TGG	+	chr7_3:24935403-24935422	None:intergenic	30.0%
CCAACTTAATCATCCTAATT+TGG	-	chr7_3:24935400-24935419	Msa1098210:CDS	30.0%
CCTAGTAAATTGACCAAATT+AGG	+	chr7_3:24935416-24935435	None:intergenic	30.0%
CCTAATTTGGTCAATTTACT+AGG	-	chr7_3:24935413-24935432	Msa1098210:CDS	30.0%
CAATAATCTTCTCATCTTTG+TGG	+	chr7_3:24935448-24935467	None:intergenic	30.0%
ATGATTATAGAGAGAACCAT+TGG	+	chr7_3:24935486-24935505	None:intergenic	30.0%
TGAAAATTGAACCTCTTACA+TGG	-	chr7_3:24935531-24935550	Msa1098210:CDS	30.0%
AGTATTTGTTTCCATGTAAG+AGG	+	chr7_3:24935545-24935564	None:intergenic	30.0%
TTGAATGTCACAATGAAAGA+TGG	+	chr7_3:24935627-24935646	None:intergenic	30.0%
GACATTGAATCAGTAAACAA+AGG	+	chr7_3:24935719-24935738	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	24935344	24939707	24935344	ID=Msa1098210;Name=Msa1098210
chr7_3	mRNA	24935344	24939707	24935344	ID=Msa1098210-mRNA-1;Parent=Msa1098210;Name=Msa1098210-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0\|0\|0\|1\|0\|0\|4\|0\|272
chr7_3	exon	24939583	24939707	24939583	ID=Msa1098210-mRNA-1:exon:5427;Parent=Msa1098210-mRNA-1
chr7_3	exon	24939278	24939525	24939278	ID=Msa1098210-mRNA-1:exon:5426;Parent=Msa1098210-mRNA-1
chr7_3	exon	24937771	24937892	24937771	ID=Msa1098210-mRNA-1:exon:5425;Parent=Msa1098210-mRNA-1
chr7_3	exon	24935344	24935664	24935344	ID=Msa1098210-mRNA-1:exon:5424;Parent=Msa1098210-mRNA-1
chr7_3	CDS	24939583	24939707	24939583	ID=Msa1098210-mRNA-1:cds;Parent=Msa1098210-mRNA-1
chr7_3	CDS	24939278	24939525	24939278	ID=Msa1098210-mRNA-1:cds;Parent=Msa1098210-mRNA-1
chr7_3	CDS	24937771	24937892	24937771	ID=Msa1098210-mRNA-1:cds;Parent=Msa1098210-mRNA-1
chr7_3	CDS	24935344	24935664	24935344	ID=Msa1098210-mRNA-1:cds;Parent=Msa1098210-mRNA-1

Gene Sequence

>Msa1098210

TATCCAATTACGGACAAAAAATTAAGAGAGTTTAAGAATGAAATTGAGTTGCTATGCCAACTTAATCATCCTAATTTGGTCAATTTACTAGGATATTGTGACCACAAAGATGAGAAGATTATTGTTGGCATGAAAATTGAACCTCTTACATGGAAACAAATACTAAAAATTTGCATAGGATCAGCATGTGGACTACACTACCTTCACACAGGAACAAAACGTACCATCTTTCATTGTGACATTCAACCTCATAAAATTTTATTGGATAGCAACATGGTGCCTAAGCTCTCAGATTTTTGGAGTTCCTTGCAAGGACCTTTGTTTACTGATTCAATGTCGAAACCAAAGTCCATATTAAGTGATAACATTGTAGACGTGACAAAAAGATGTTTGCAGTATGATCCAAATGAACGACCAACAATGGGTGAAGTTGAGGTGCAACTAGAGCTTGCTCTTTTACTTCAGGAAAAAGAAGATTGTAGCAAAAACACCAATTGTGACGTTTACTCCTTTGGTAATATTCTACTAGAAGTGGTATGCTTGGGTAAGTTAGAAAATGTTAAGAGAGAGAGGCTTCCAATGGAGGAGAATATTGATGAGTATCTCAAAGGAAGCATTGCACCAAAATGTTGGGAAGTATTTGTAGATGTGACAAAAAGATGTTTGCAGTATGATCCAAATGAACGACCAACAATGGGTGAAGTGGAGGTGCAACTTGAGCTTGCTCTTTTACTTCAGGAAAATCCAGATTGTAGCAAAAACACCAATGTTGATGATGGTCATTATAAACTATTATCTACAACCATTATTGATGAC

Protein sequence

>Msa1098210

YPITDKKLREFKNEIELLCQLNHPNLVNLLGYCDHKDEKIIVGMKIEPLTWKQILKICIGSACGLHYLHTGTKRTIFHCDIQPHKILLDSNMVPKLSDFWSSLQGPLFTDSMSKPKSILSDNIVDVTKRCLQYDPNERPTMGEVEVQLELALLLQEKEDCSKNTNCDVYSFGNILLEVVCLGKLENVKRERLPMEENIDEYLKGSIAPKCWEVFVDVTKRCLQYDPNERPTMGEVEVQLELALLLQENPDCSKNTNVDDGHYKLLSTTIIDD